From: M. Madhu (madhu7_at_hotmail.com)
Date: Tue Feb 07 2006 - 15:56:47 CST
Hi Gumbart,
Thank you very much for your reply. I got both top_*.inp and par_*.inp
files.
Madhu
>From: JC Gumbart <gumbart_at_ks.uiuc.edu>
>To: "M. Madhu" <madhu7_at_hotmail.com>
>CC: namd-l_at_ks.uiuc.edu
>Subject: Re: namd-l: Topology file for Building Gramicidin A (tutorial)
>Date: Tue, 7 Feb 2006 13:20:06 -0600
>
>I think they should have been downloaded by VMD in the running of the
>tutorial, but in any case, they are located here:
>
>http://www.ks.uiuc.edu/Research/namd/tutorial/NCSA2002/hands-on/
>top_all27_prot_lipid.inp
>
>http://www.ks.uiuc.edu/Research/namd/tutorial/NCSA2002/hands-on/
>par_all27_prot_lipid.inp
>
>On Feb 7, 2006, at 11:37 AM, M. Madhu wrote:
>
>>Dear NAMD users,
>>
>>I am a new NAMD user. I am trying to do the tutorial for Gramicidin in
>>explicit
>>membrane. In the begining of the tutorail it was mentioned that new
>>entries
>>were made for formyl and ethanolamide groups in the topology file
>>(toppar/top_all27_prot_lipid.inp). I could not find the topology file
>>with these
>>two groups. I would appreciate if someone can tell me the exact location
>>of
>>this file (downloadable) or send me the correct topology & parameter
>>files
>>for doing this tutorial.
>>
>>Thank you very much.
>>
>>Madhu
>>
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