From: Carlos Simoes (caze.mailings_at_gmail.com)
Date: Sat Jan 21 2006 - 11:04:54 CST
Hi,
I intended to do exactly the same, some time ago, and I found this
way, back then:
1- Load your entire trajectory on VMD (psf+dcd);
2- Use the "Save Coordinates" tool (here you can select a part or the
whole system to be saved);
3- Use the attached "splitmultiframepdb2files.tcl" script to split the
single multi-framed pdb file you obtain from the previous step (take a
look to the script to check its usage).
I hope this helps...
carlos
On 1/20/06, Boyang Wang <pkuwangboyang_at_yahoo.com.cn> wrote:
> Hi all, I am wondering what is the best way to save the coordinates of each
> frame into one separate .pdb file from a 100-frame .dcd file.
>
> What I can do now is to save each frame as one pdb file using VMD, and I
> can only do this one frame by one frame. This is very slow.
>
> Thanks for all your time.
>
> Boyang.
>
>
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