From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Thu Nov 10 2005 - 10:27:14 CST
Dear Uma,
this can be done using the coorfile open and coorfile read commands; you
can see a good example of this at
http://www.ks.uiuc.edu/Research/namd/current/ug/node40.html in the last
config file. There will also be a GUI for setting up such analysis runs
included in VMD 1.8.4.
Peter
Uma Mahankali wrote:
>Dear all,
>
>I am trying to analyze trajectories obtained using different timesteps
>to calculate the pair interaction energies. As such, I was wondering
>if there is a way I can do this in one analysis file itself by
>adjusting the timestep everytime I read a new dcd file or is it better
>to just run separate analyses.
>
>Thanks,
>Uma
>
>--
>Uma Mahankali,
>Graduate Student,
>Department of Chemistry,
>University of Cincinnati,
>Ohio-45219
>USA
>
>
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