From: Cetin Baloglu (baloglu_at_gmail.com)
Date: Tue May 24 2005 - 20:31:02 CDT
Hi Leonardo,
namddat uses awk to parse the output file, and possibly awk has some
problems with some LANG variables ( echo $LANG ). Try namddat after
changing your console language with en_US or en_EN ( LANG=en_US ;
export $LANG - for bash shell ) .
Cetin Baloglu
On 5/25/05, Leonardo Sepulveda Durán <leonardosepulveda_at_gmail.com> wrote:
> Hello people!!!
>
> I have done some simulations with namd and I wanted to extract basic
> features from it. I Read a suitable way for it is using "namddat". I
> downloaded it from
>
> http://www.ks.uiuc.edu/Research/namd/utilities/namddat.
>
> When I used it on a bash shell it give me the following output
>
> [leonardo_at_rna1 NVT]$ namddat
> Usage: /home/leonardo/LEONARDO/SCRIPTS/NAMD/namddat [zero] [diff]
> [<yfield> [<yfield> ...] [vs <xfield>]] <file>
> [leonardo_at_rna1 NVT]$ namddat TEMP nvt.log
> ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC
> TOTAL TEMP TOTAL2 TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG
> GPRESSAVG
> Calculating average of TEMP
> [leonardo_at_rna1 NVT]$ more data.dat
> TS TEMP
>
> So, the time series is not constructed. Only Headers are printed. Does
> someone knows where the problem is????
>
> Gracias
> ~~~~~~~~~~~~~~~~~~~~~~~~~
> Leonardo Andres Sepúlveda Durán
> Graduado de Bioquimica
> Universidad de Chile
> ~~~~~~~~~~~~~~~~~~~~~~~~~
>
>
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