Minimization after a MD simulation

From: valesrdp (
Date: Tue May 03 2005 - 04:48:14 CDT


I obtained the output files of a MD simulation with NAMD.
I tried to minimize some frames of my MD with NAMD and I always observe a
problem with hydrogen atom bound to the indolic nitrogen atom of TRP residues:
this hydrogen is never planar with the residue.
Can anyone help me? Is there anybody using NAMD for the minimization after a MD



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