#!/bin/csh  -f

# This is a counter
foreach m (1 2 3 4 5)

/home/nobuyuki/apps/NAMD/NAMD_2.5b1_Linux-i686/charmrun /home/nobuyuki/apps/NAMD/NAMD_2.5b1_Linux-i686/namd2 +p18 md_fep.in > c_l_$m.out
cp temp.fepout c_l_$m.fepout

mv fep_0.dcd c_l_$m.dcd
mv fep_0.xst c_l_$m.xst
mv fep_0.xsc c_l_$m.xsc
mv fep_0.vel c_l_$m.vel
mv fep_0.coor c_l_$m.coor

/home/nobuyuki/apps/NAMD/NAMD_2.5b1_Linux-i686/charmrun /home/nobuyuki/apps/NAMD/NAMD_2.5b1_Linux-i686/namd2 +p18 md_fepb.in > c_l_r_$m.out
cp tempb.fepout c_l_r_$m.fepout

mv fepb_0.dcd c_l_r_$m.dcd
mv fepb_0.xst c_l_r_$m.xst
mv fepb_0.xsc c_l_r_$m.xsc
mv fepb_0.vel c_l_r_$m.vel
mv fepb_0.coor c_l_r_$m.coor

end