Here is a list of all class members with links to the classes they belong to:
- l -
- l
: cr_sortop_distance
, CudaDihedral
- LALT
: PDBAtom
- lambda_table
: ComputeNonbondedUtil
- langevin_param()
: Molecule
- langevin_useBAOAB
: SimParameters
- langevinDamping
: SimParameters
- langevinHydrogen
: SimParameters
- langevinOn
: SimParameters
- langevinOnAtStartup
: SimParameters
- langevinParam
: FullAtom
- langevinPiston()
: Sequencer
- langevinPiston1()
: Controller
- langevinPiston2()
: Controller
- langevinPiston_origStrainRate
: Controller
- langevinPiston_strainRate
: ControllerState
- langevinPistonBarrier
: SimParameters
- langevinPistonDecay
: SimParameters
- langevinPistonOn
: SimParameters
- langevinPistonPeriod
: SimParameters
- langevinPistonTarget
: SimParameters
- langevinPistonTemp
: SimParameters
- langevinTemp
: SimParameters
- langevinVelocities()
: Sequencer
- langevinVelocitiesBBK1()
: Sequencer
- langevinVelocitiesBBK2()
: Sequencer
- lastAtomsForcedBegin
: GlobalMaster
- lastAtomsForcedEnd
: GlobalMaster
- lastForcesBegin
: GlobalMaster
- lastLdbStep
: SimParameters
- lastPe
: CollectLoadsMsg
- lastResid
: ResidueLookupElem
- lat
: ComputeGlobalDataMsg
- latqueue
: CollectionMaster::CollectVectorSequence
- Lattice()
: Lattice
- lattice
: CollectionMaster::CollectVectorInstance
, ExtCoordMsg
, FmmSerialCoordMsg
, ComputeMsmMgr
, MsmSerialCoordMsg
, ComputeNonbondedCUDA
, ComputeNonbondedMIC
, PmeGridMsg
, PmeTransMsg
, ComputePmeMgr::cuda_submit_charges_args
, PmePencil< T >
, PmeAtomMsg
, PmeAtomPencilMsg
, Controller::checkpoint
, GlobalMaster
, HomePatch::checkpoint_t
, Patch
, SetLatticeMsg
, CheckpointAtomsMsg
, ExchangeAtomsMsg
, Flags
, PmeRunMsg
, PmeBlockMsg
, PmePencilXYZ
, PmePencilXY
, PmePencilX
, PmePencilY
, PmePencilZ
, SimParameters
- launchWork()
: CudaComputeNonbonded
- LCHAIN
: PDBAtom
- LCOOR
: PDBAtom
- LCOORPREC
: PDBAtom
- LCPONeighborList()
: LCPONeighborList
- LCPOOn
: SimParameters
- lcpoType
: ComputeLCPO
, Patch
- lcpoTypeBox
: ComputeLCPO
, Patch
- lcpoTypeBoxClosed()
: Patch
- lcpoTypeComputeList
: Patch
- lcpoTypeList
: ProxyDataMsg
- ldBalancer
: SimParameters
- ldBarrierHandle
: LdbCoordinator
- ldbBackgroundScaling
: SimParameters
- LdbCoordinator()
: LdbCoordinator
- ldbCoordinator
: BOCgroup
, Node
- ldbCycleNum
: LdbCoordinator
- ldbHomeBackgroundScaling
: SimParameters
- ldbPeriod
: SimParameters
- ldbPMEBackgroundScaling
: SimParameters
- ldbRelativeGrainsize
: SimParameters
- ldbStatsFP
: LdbCoordinator
- ldbSteps
: Controller
, Sequencer
- ldbStrategy
: SimParameters
- ldbUnloadOne
: SimParameters
- ldbUnloadOutputPEs
: SimParameters
- ldbUnloadPME
: SimParameters
- ldbUnloadZero
: SimParameters
- ldObjHandle
: Compute
, HomePatch
- ldObjPtr
: SimpleBroadcastObject< T >
- left
: bond_params
, angle_params
, vdw_params
, indexed_vdw_pair
, indexed_nbthole_pair
, indexed_table_pair
- LELEMENT
: PDBAtom
- len
: PmeGridMsg
, StreamMessage
, msm::Array< T >
- length
: IMDheader
, MoveInputAtomsMsg
, AtomsCntPerPatchMsg
, Vector
- Length
: PDBAtom
- length2()
: Vector
- lesFactor
: ComputeNonbondedUtil
, ComputePmeUtil
, SimParameters
- lesOn
: ComputeNonbondedUtil
, ComputePmeUtil
, SimParameters
- lesReduceMass
: SimParameters
- lesReduceTemp
: SimParameters
- lesScaling
: ComputeNonbondedUtil
- level
: msm::BlockIndex
- LFOOT
: PDBAtom
- limitDist
: SimParameters
- line
: eABF
- linear_interpolate()
: GridforceLiteGrid
- linenumber
: FileStack
- LINSERT
: PDBAtom
- List()
: AGroup
- listNode()
: listNode
- LJ14ACoefficients
: AmberParm7Reader::Ambertoppar
- LJ14BCoefficients
: AmberParm7Reader::Ambertoppar
- LJcorrection
: SimParameters
- ljEnergy
: Controller
- ljEnergy_f
: Controller
- ljEnergy_f_left
: Controller
- ljEnergy_ti_1
: Controller
- ljEnergy_ti_2
: Controller
- LJTable()
: LJTable
- ljTable
: ComputeNonbondedUtil
- lk_maxgridpts
: NL_Msm_t
- lk_maxlevels
: NL_Msm_t
- lk_maxwts
: NL_Msm_t
- lk_nlevels
: NL_Msm_t
- lk_padding
: NL_Msm_t
- lk_srad
: NL_Msm_t
- LNAME
: PDBAtom
- load()
: UniqueSet< Elem >
, SplitComputesMsg
, ScriptTcl
, SortedArray< Type >
, UniqueSetRaw< Elem >
, InfoRecord
- load_atoms()
: colvarproxy_namd
- load_coords()
: colvarproxy_namd
- loadComputeMap()
: ComputeMap
, SimParameters
- loadI()
: GBISInput< 1 >
, GBISInput< 2 >
, GBISInput< 3 >
- loadJ()
: GBISInput< 1 >
, GBISInput< 2 >
, GBISInput< 3 >
- loadmatrix()
: Matrix4
- loadStructure()
: NamdState
- loadTuples()
: ComputeHomeTuples< T, S, P >
- localActivePatches
: ComputeNonbondedCUDA
, ComputeNonbondedMIC
- localComputeRecords
: ComputeNonbondedCUDA
, ComputeNonbondedMIC
- localHostedPatches
: ComputeNonbondedCUDA
, ComputeNonbondedMIC
- localID()
: AtomMap
- localIndex
: DihedralElem
, GromacsPairElem
, ComputeNonbondedMIC::patch_record
, AnisoElem
, AngleElem
, CrosstermElem
, ComputeNonbondedCUDA::patch_record
, BondElem
, ImproperElem
, TholeElem
, ExclElem
- LocalLBInfoMsg()
: LocalLBInfoMsg
- LOCALMOD()
: datastream
- localStart
: ComputeNonbondedCUDA::patch_record
, ComputeNonbondedMIC::patch_record
- localWorkMsg
: Compute
- localWorkMsg2
: ComputeNonbondedCUDA
, ComputeNonbondedMIC
- LOCC
: PDBAtom
- LOCCPREC
: PDBAtom
- lock
: PmeSharedUntransMsg
, PmeSharedTransMsg
- loffsetXYZ
: CudaDihedral
- log()
: colvarproxy_namd
- lonepairs
: SimParameters
- longSplitting
: SimParameters
- lookat()
: Matrix4
- lookup()
: ResidueLookupElem
- lookupCstPool()
: HashPool< T >
- loop
: DataExchanger
- low
: netint
- loweAndersenCutoff
: SimParameters
- loweAndersenFinish()
: HomePatch
- loweAndersenOn
: SimParameters
- loweAndersenRate
: SimParameters
- loweAndersenTemp
: SimParameters
- loweAndersenVelocities()
: HomePatch
- lower()
: msm::IndexRange
- lowerboundary
: eABF
- lowest
: netint
- LRESNAME
: PDBAtom
- LRESSEQ
: PDBAtom
- LSEGNAME
: PDBAtom
- LSERIAL
: PDBAtom
- lssDat
: QMForceMsg
- LSSDataStr()
: LSSDataStr
- lssDistSort()
: lssDistSort
- LSSSubsDat()
: LSSSubsDat
- LTEMPF
: PDBAtom
- LTEMPFPREC
: PDBAtom
- LTYPE
: PDBAtom
- lyzd
: NL_Msm_t
- lyzd_f
: NL_Msm_t
- lzd
: NL_Msm_t
- lzd_f
: NL_Msm_t