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NAMD
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This is the complete list of members for Sequencer, including all inherited members.
| adaptTempT | Sequencer | protected |
| adaptTempUpdate(int) | Sequencer | protected |
| addForceToMomentum(BigReal, const int ftag=Results::normal, const int useSaved=0) | Sequencer | protected |
| addForceToMomentum3(const BigReal timestep1, const int ftag1, const int useSaved1, const BigReal timestep2, const int ftag2, const int useSaved2, const BigReal timestep3, const int ftag3, const int useSaved3) | Sequencer | protected |
| addMovDragToPosition(BigReal) | Sequencer | protected |
| addRotDragToPosition(BigReal) | Sequencer | protected |
| addVelocityToPosition(BigReal) | Sequencer | protected |
| algorithm(void) | Sequencer | protectedvirtual |
| awaken(void) | Sequencer | inline |
| berendsenPressure(int) | Sequencer | protected |
| berendsenPressure_count | Sequencer | protected |
| broadcast | Sequencer | protected |
| calcFixVirial(Tensor &fixVirialNormal, Tensor &fixVirialNbond, Tensor &fixVirialSlow, Vector &fixForceNormal, Vector &fixForceNbond, Vector &fixForceSlow) | Sequencer | protected |
| calcKineticEnergy() | Sequencer | protected |
| checkpoint_berendsenPressure_count | Sequencer | protected |
| collection | Sequencer | protected |
| correctMomentum(int step, BigReal drifttime) | Sequencer | protected |
| cycleBarrier(int, int) | Sequencer | protected |
| doKineticEnergy | Sequencer | protected |
| doMomenta | Sequencer | protected |
| hardWallDrude(BigReal, int) | Sequencer | protected |
| HomePatch class | Sequencer | friend |
| integrate(int) | Sequencer | protected |
| langevinPiston(int) | Sequencer | protected |
| langevinVelocities(BigReal) | Sequencer | protected |
| langevinVelocitiesBBK1(BigReal) | Sequencer | protected |
| langevinVelocitiesBBK2(BigReal) | Sequencer | protected |
| ldbSteps | Sequencer | protected |
| maximumMove(BigReal) | Sequencer | protected |
| min_reduction | Sequencer | protected |
| minimizationQuenchVelocity(void) | Sequencer | protected |
| minimize() | Sequencer | protected |
| minimizeMoveDownhill(BigReal fmax2) | Sequencer | protected |
| multigratorPressure(int step, int callNumber) | Sequencer | protected |
| multigratorReduction | Sequencer | protected |
| multigratorTemperature(int step, int callNumber) | Sequencer | protected |
| newMinimizeDirection(BigReal) | Sequencer | protected |
| newMinimizePosition(BigReal) | Sequencer | protected |
| newtonianVelocities(BigReal, const BigReal, const BigReal, const BigReal, const int, const int, const int) | Sequencer | protected |
| pairlistsAge | Sequencer | protected |
| pairlistsAreValid | Sequencer | protected |
| patch | Sequencer | protected |
| pressureProfileReduction | Sequencer | protected |
| quenchVelocities() | Sequencer | protected |
| random | Sequencer | protected |
| rattle1(BigReal, int) | Sequencer | protected |
| reassignVelocities(BigReal, int) | Sequencer | protected |
| rebalanceLoad(int timestep) | Sequencer | protected |
| reduction | Sequencer | protected |
| reinitVelocities(void) | Sequencer | protected |
| reloadCharges() | Sequencer | protected |
| rescaleaccelMD(int, int, int) | Sequencer | protected |
| rescaleSoluteCharges(BigReal) | Sequencer | protected |
| rescaleVelocities(int) | Sequencer | protected |
| rescaleVelocities_numTemps | Sequencer | protected |
| rescaleVelocitiesByFactor(BigReal) | Sequencer | protected |
| run(void) | Sequencer | |
| runComputeObjects(int migration=1, int pairlists=0, int pressureStep=0) | Sequencer | protected |
| saveForce(const int ftag=Results::normal) | Sequencer | protected |
| scalePositionsVelocities(const Tensor &posScale, const Tensor &velScale) | Sequencer | protected |
| scaleVelocities(const BigReal velScale) | Sequencer | protected |
| Sequencer(HomePatch *p) | Sequencer | |
| simParams | Sequencer | protected |
| slowFreq | Sequencer | protected |
| stochRescale_count | Sequencer | protected |
| stochRescaleVelocities(BigReal, int) | Sequencer | protected |
| submitCollections(int step, int zeroVel=0) | Sequencer | protected |
| submitHalfstep(int) | Sequencer | protected |
| submitMinimizeReductions(int, BigReal fmax2) | Sequencer | protected |
| submitMomentum(int step) | Sequencer | protected |
| submitReductions(int) | Sequencer | protected |
| suspend(void) | Sequencer | |
| tcoupleVelocities(BigReal, int) | Sequencer | protected |
| terminate(void) | Sequencer | protected |
| traceBarrier(int) | Sequencer | protected |
| ~Sequencer(void) | Sequencer | virtual |
1.8.5