NAMD
ExclElem Member List

This is the complete list of members for ExclElem, including all inherited members.

A12_fComputeNonbondedUtilstatic
A6_fComputeNonbondedUtilstatic
accelMDOnComputeNonbondedUtilstatic
alchDecoupleComputeNonbondedUtilstatic
alchFepOnComputeNonbondedUtilstatic
alchThermIntOnComputeNonbondedUtilstatic
alchVdwShiftCoeffComputeNonbondedUtilstatic
alchWCAOnComputeNonbondedUtilstatic
atomIDExclElem
B12_fComputeNonbondedUtilstatic
B6_fComputeNonbondedUtilstatic
c0ComputeNonbondedUtilstatic
c1ComputeNonbondedUtilstatic
C12_fComputeNonbondedUtilstatic
c3ComputeNonbondedUtilstatic
c5ComputeNonbondedUtilstatic
c6ComputeNonbondedUtilstatic
C6_fComputeNonbondedUtilstatic
c7ComputeNonbondedUtilstatic
c8ComputeNonbondedUtilstatic
calc_error(nonbonded *)ComputeNonbondedUtilstatic
calc_pair(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_fep(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_fullelect(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_fullelect_fep(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_fullelect_go(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_fullelect_int(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_fullelect_les(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_fullelect_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_fullelect_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_fullelect_ti(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_go(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_int(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_les(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_merge_fullelect(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_merge_fullelect_fep(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_merge_fullelect_go(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_merge_fullelect_int(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_merge_fullelect_les(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_merge_fullelect_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_merge_fullelect_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_merge_fullelect_ti(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_slow_fullelect(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_slow_fullelect_fep(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_slow_fullelect_go(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_slow_fullelect_les(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_slow_fullelect_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_slow_fullelect_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_slow_fullelect_ti(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_energy_ti(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_fullelect(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_fullelect_go(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_fullelect_les(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_fullelect_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_fullelect_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_fullelect_ti(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_go(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_les(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_merge_fullelect(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_merge_fullelect_go(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_merge_fullelect_les(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_merge_fullelect_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_merge_fullelect_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_merge_fullelect_ti(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_slow_fullelect(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_slow_fullelect_go(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_slow_fullelect_les(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_slow_fullelect_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_slow_fullelect_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_slow_fullelect_ti(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_pair_ti(nonbonded *)ComputeNonbondedUtilstatic
calc_self(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_fep(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_fullelect(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_fullelect_fep(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_fullelect_go(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_fullelect_int(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_fullelect_les(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_fullelect_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_fullelect_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_fullelect_ti(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_go(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_int(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_les(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_merge_fullelect(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_merge_fullelect_fep(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_merge_fullelect_go(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_merge_fullelect_int(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_merge_fullelect_les(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_merge_fullelect_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_merge_fullelect_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_merge_fullelect_ti(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_slow_fullelect(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_slow_fullelect_fep(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_slow_fullelect_go(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_slow_fullelect_les(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_slow_fullelect_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_slow_fullelect_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_slow_fullelect_ti(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_self_energy_ti(nonbonded *)ComputeNonbondedUtilstatic
calc_self_fullelect(nonbonded *)ComputeNonbondedUtilstatic
calc_self_fullelect_go(nonbonded *)ComputeNonbondedUtilstatic
calc_self_fullelect_les(nonbonded *)ComputeNonbondedUtilstatic
calc_self_fullelect_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_self_fullelect_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_self_fullelect_ti(nonbonded *)ComputeNonbondedUtilstatic
calc_self_go(nonbonded *)ComputeNonbondedUtilstatic
calc_self_les(nonbonded *)ComputeNonbondedUtilstatic
calc_self_merge_fullelect(nonbonded *)ComputeNonbondedUtilstatic
calc_self_merge_fullelect_go(nonbonded *)ComputeNonbondedUtilstatic
calc_self_merge_fullelect_les(nonbonded *)ComputeNonbondedUtilstatic
calc_self_merge_fullelect_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_self_merge_fullelect_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_self_merge_fullelect_ti(nonbonded *)ComputeNonbondedUtilstatic
calc_self_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_self_slow_fullelect(nonbonded *)ComputeNonbondedUtilstatic
calc_self_slow_fullelect_go(nonbonded *)ComputeNonbondedUtilstatic
calc_self_slow_fullelect_les(nonbonded *)ComputeNonbondedUtilstatic
calc_self_slow_fullelect_pprof(nonbonded *)ComputeNonbondedUtilstatic
calc_self_slow_fullelect_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_self_slow_fullelect_ti(nonbonded *)ComputeNonbondedUtilstatic
calc_self_tabener(nonbonded *)ComputeNonbondedUtilstatic
calc_self_ti(nonbonded *)ComputeNonbondedUtilstatic
calcFullPairComputeNonbondedUtilstatic
calcFullPairEnergyComputeNonbondedUtilstatic
calcFullSelfComputeNonbondedUtilstatic
calcFullSelfEnergyComputeNonbondedUtilstatic
calcGBIS(nonbonded *params, GBISParamStruct *gbisParams)ComputeNonbondedUtil
calcMergePairComputeNonbondedUtilstatic
calcMergePairEnergyComputeNonbondedUtilstatic
calcMergeSelfComputeNonbondedUtilstatic
calcMergeSelfEnergyComputeNonbondedUtilstatic
calcPairComputeNonbondedUtilstatic
calcPairEnergyComputeNonbondedUtilstatic
calcSelfComputeNonbondedUtilstatic
calcSelfEnergyComputeNonbondedUtilstatic
calcSlowPairComputeNonbondedUtilstatic
calcSlowPairEnergyComputeNonbondedUtilstatic
calcSlowSelfComputeNonbondedUtilstatic
calcSlowSelfEnergyComputeNonbondedUtilstatic
columnsizeComputeNonbondedUtilstatic
commOnlyComputeNonbondedUtilstatic
computeForce(ExclElem *, int, BigReal *, BigReal *)ExclElemstatic
ComputeNonbondedUtil()ComputeNonbondedUtilinline
corr_tableComputeNonbondedUtilstatic
cutoffComputeNonbondedUtilstatic
cutoff2ComputeNonbondedUtilstatic
cutoff2_fComputeNonbondedUtilstatic
cutoff_3ComputeNonbondedUtilstatic
cutoff_3_fComputeNonbondedUtilstatic
cutoff_6ComputeNonbondedUtilstatic
cutoff_6_fComputeNonbondedUtilstatic
dielectric_1ComputeNonbondedUtilstatic
drudeNbtholeComputeNonbondedUtilstatic
electEnergyIndex enum valueExclElem
electEnergyIndex_s enum valueComputeNonbondedUtil
electEnergyIndex_ti_1 enum valueComputeNonbondedUtil
electEnergyIndex_ti_2 enum valueComputeNonbondedUtil
ewaldcofComputeNonbondedUtilstatic
exclChecksumIndex enum valueComputeNonbondedUtil
ExclElem()ExclEleminline
ExclElem(AtomID atom0, const TupleSignature *sig, const int *v)ExclEleminline
ExclElem(const Exclusion *a, const int *v)ExclEleminline
ExclElem(AtomID atom0, AtomID atom1)ExclEleminline
fast_tableComputeNonbondedUtilstatic
fixedAtomsOnComputeNonbondedUtilstatic
full_tableComputeNonbondedUtilstatic
fullElectEnergyIndex enum valueExclElem
fullElectEnergyIndex_s enum valueComputeNonbondedUtil
fullElectEnergyIndex_ti_1 enum valueComputeNonbondedUtil
fullElectEnergyIndex_ti_2 enum valueComputeNonbondedUtil
getMoleculePointers(Molecule *, int *, int32 ***, Exclusion **)ExclElemstatic
getParameterPointers(Parameters *, const int **)ExclElemstatic
getTupleInfo(ExclusionSignature *sig, int *count, TupleSignature **t)ExclEleminlinestatic
goForcesOnComputeNonbondedUtilstatic
goGroPairComputeNonbondedUtilstatic
goMethodComputeNonbondedUtilstatic
goNativeEnergyIndex enum valueComputeNonbondedUtil
goNonnativeEnergyIndex enum valueComputeNonbondedUtil
groGaussEnergyIndex enum valueComputeNonbondedUtil
groLJEnergyIndex enum valueComputeNonbondedUtil
hash() const ExclEleminline
k_vdwaComputeNonbondedUtilstatic
k_vdwa_fComputeNonbondedUtilstatic
k_vdwbComputeNonbondedUtilstatic
k_vdwb_fComputeNonbondedUtilstatic
lambda_tableComputeNonbondedUtilstatic
lesFactorComputeNonbondedUtilstatic
lesOnComputeNonbondedUtilstatic
lesScalingComputeNonbondedUtilstatic
ljTableComputeNonbondedUtilstatic
localIndexExclElem
modifiedExclElem
molComputeNonbondedUtilstatic
operator<(const ExclElem &a) const ExclEleminline
operator==(const ExclElem &a) const ExclEleminline
pExclElem
pairInteractionOnComputeNonbondedUtilstatic
pairInteractionSelfComputeNonbondedUtilstatic
pairlistWarningIndex enum valueComputeNonbondedUtil
pi_ewaldcofComputeNonbondedUtilstatic
pressureProfileAtomTypesExclElemstatic
pressureProfileMinExclElemstatic
pressureProfileOnComputeNonbondedUtilstatic
pressureProfileSlabsExclElemstatic
pressureProfileThicknessExclElemstatic
qmForcesOnComputeNonbondedUtilstatic
r2_deltaComputeNonbondedUtilstatic
r2_delta_1ComputeNonbondedUtilstatic
r2_delta_expComputeNonbondedUtilstatic
r2_tableComputeNonbondedUtilstatic
reductionChecksumLabel enum valueExclElem
reductionDataSize enum valueExclElem
rowsizeComputeNonbondedUtilstatic
scaleExclElem
scale14ComputeNonbondedUtilstatic
scalingComputeNonbondedUtilstatic
scor_tableComputeNonbondedUtilstatic
select(void)ComputeNonbondedUtilstatic
size enum valueExclElem
slow_tableComputeNonbondedUtilstatic
square(const BigReal &x, const BigReal &y, const BigReal &z)ComputeNonbondedUtilinlinestatic
submitPressureProfileData(BigReal *, SubmitReduction *)ComputeNonbondedUtilstatic
submitReductionData(BigReal *, SubmitReduction *)ExclElemstatic
switchOnComputeNonbondedUtilstatic
switchOn2ComputeNonbondedUtilstatic
switchOn_1ComputeNonbondedUtilstatic
switchOn_fComputeNonbondedUtilstatic
table_allocComputeNonbondedUtilstatic
table_enerComputeNonbondedUtilstatic
table_lengthComputeNonbondedUtilstatic
table_noshortComputeNonbondedUtilstatic
table_shortComputeNonbondedUtilstatic
TENSOR enum valueExclElem
v_vdwaComputeNonbondedUtilstatic
v_vdwa_fComputeNonbondedUtilstatic
v_vdwbComputeNonbondedUtilstatic
v_vdwb_fComputeNonbondedUtilstatic
vdw_switch_modeComputeNonbondedUtilstatic
vdwa_tableComputeNonbondedUtilstatic
vdwb_tableComputeNonbondedUtilstatic
vdwEnergyIndex enum valueExclElem
vdwEnergyIndex_s enum valueComputeNonbondedUtil
vdwEnergyIndex_ti_1 enum valueComputeNonbondedUtil
vdwEnergyIndex_ti_2 enum valueComputeNonbondedUtil
vdwForceSwitchingComputeNonbondedUtilstatic
VECTOR enum valueComputeNonbondedUtil
~ComputeNonbondedUtil()ComputeNonbondedUtilinline
~ExclElem()ExclEleminline