Controller Member List

This is the complete list of members for Controller, including all inherited members.

accelMDdV	Controller
accelMDdVAverage	Controller	protected
adaptTempAutoDt	Controller	protected
adaptTempBetaMax	Controller	protected
adaptTempBetaMin	Controller	protected
adaptTempBetaN	Controller	protected
adaptTempBin	Controller	protected
adaptTempBins	Controller	protected
adaptTempCg	Controller	protected
adaptTempDBeta	Controller	protected
adaptTempDt	Controller	protected
adaptTempDTave	Controller	protected
adaptTempDTavenum	Controller	protected
adaptTempDtMax	Controller	protected
adaptTempDtMin	Controller	protected
adaptTempInit(int step)	Controller	protected
adaptTempPotEnergyAve	Controller	protected
adaptTempPotEnergyAveDen	Controller	protected
adaptTempPotEnergyAveNum	Controller	protected
adaptTempPotEnergySamples	Controller	protected
adaptTempPotEnergyVar	Controller	protected
adaptTempPotEnergyVarNum	Controller	protected
adaptTempRestartFile	Controller	protected
adaptTempT	Controller	protected
adaptTempUpdate(int step, int minimize=0)	Controller	protected
adaptTempWriteRestart(int step)	Controller	protected
alchWork	Controller	protected
algorithm(void)	Controller	protectedvirtual
amd_reduction	Controller	protected
avg_count	Controller	protected
awaken(void)	Controller	inline
berendsenPressure(int)	Controller	protected
berendsenPressure_avg	ControllerState	protected
berendsenPressure_count	ControllerState	protected
bondedEnergy_ti_1	Controller	protected
bondedEnergy_ti_2	Controller	protected
bondedEnergyDiff_f	Controller	protected
broadcast	Controller	protected
calc_accelMDG_E_k(int iE, int V_n, BigReal sigma0, BigReal Vmax, BigReal Vmin, BigReal Vavg, BigReal sigmaV, BigReal *k0, BigReal *k, BigReal *E, int *iEused, char *warn)	Controller	inlineprotected
calc_accelMDG_force_factor(BigReal k, BigReal E, BigReal testV, Tensor vir_orig, BigReal *dV, BigReal *factor, Tensor *vir)	Controller	inlineprotected
calc_accelMDG_mean_std(BigReal testV, int step_n, BigReal *Vmax, BigReal *Vmin, BigReal *Vavg, BigReal *M2, BigReal *sigmaV)	Controller	inlineprotected
calcPressure(int step, int minimize, const Tensor &virial_normal_in, const Tensor &virial_nbond_in, const Tensor &virial_slow_in, const Tensor &intVirial_normal, const Tensor &intVirial_nbond, const Tensor &intVirial_slow, const Vector &extForce_normal, const Vector &extForce_nbond, const Vector &extForce_slow)	Controller	protected
checkpoint_lattice	Controller	protected
checkpoint_state	Controller	protected
checkpoint_stored	Controller	protected
checkpoint_task	Controller	protected
CheckpointMsg class	Controller	friend
checkpoints	Controller	protected
collection	Controller	protected
compareChecksums(int, int=0)	Controller	protected
computeAlchWork(const int step)	Controller	protected
computeChecksum	Controller	protected
Controller(NamdState *s)	Controller
controlNumDegFreedom	Controller	protected
controlPressure	Controller	protected
controlPressure_nbond	Controller	protected
controlPressure_normal	Controller	protected
controlPressure_slow	Controller	protected
correctMomentum(int step)	Controller	protected
cumAlchWork	Controller	protected
cycleBarrier(int, int)	Controller	protected
dE	Controller	protected
dG	Controller	protected
drudeBondTemp	Controller	protected
drudeBondTempAvg	Controller	protected
electEnergy	Controller	protected
electEnergy_f	Controller	protected
electEnergy_ti_1	Controller	protected
electEnergy_ti_2	Controller	protected
electEnergyPME_ti_1	Controller	protected
electEnergyPME_ti_2	Controller	protected
electEnergySlow	Controller	protected
electEnergySlow_f	Controller	protected
electEnergySlow_ti_1	Controller	protected
electEnergySlow_ti_2	Controller	protected
enqueueCollections(int)	Controller	protected
exp_dE_ByRT	Controller	protected
fepFile	Controller	protected
FepNo	Controller	protected
fepSum	Controller	protected
fflush_count	Controller	protected
goNativeEnergy	Controller	protected
goNonnativeEnergy	Controller	protected
goTotalEnergy	Controller	protected
groGaussEnergy	Controller	protected
groLJEnergy	Controller	protected
groupPressure	Controller	protected
groupPressure_avg	Controller	protected
groupPressure_nbond	Controller	protected
groupPressure_normal	Controller	protected
groupPressure_slow	Controller	protected
groupPressure_tavg	Controller	protected
heat	Controller	protected
integrate(int)	Controller	protected
kineticEnergy	Controller	protected
kineticEnergyCentered	Controller	protected
kineticEnergyHalfstep	Controller	protected
langevinPiston1(int)	Controller	protected
langevinPiston2(int)	Controller	protected
langevinPiston_origStrainRate	Controller	protected
langevinPiston_strainRate	ControllerState	protected
ldbSteps	Controller	protected
ljEnergy	Controller	protected
ljEnergy_f	Controller	protected
ljEnergy_f_left	Controller	protected
ljEnergy_ti_1	Controller	protected
ljEnergy_ti_2	Controller	protected
marginViolations	Controller	protected
min_energy	Controller	protected
min_f_dot_f	Controller	protected
min_f_dot_v	Controller	protected
min_huge_count	Controller	protected
min_reduction	Controller	protected
min_v_dot_v	Controller	protected
minimize()	Controller	protected
momentumSqrSum	Controller	protected
multigatorCalcEnthalpy(BigReal potentialEnergy, int step, int minimize)	Controller	protected
multigratorNu	Controller	protected
multigratorNuT	Controller	protected
multigratorOmega	Controller	protected
multigratorPressure(int step, int callNumber)	Controller	protected
multigratorReduction	Controller	protected
multigratorTemperature(int step, int callNumber)	Controller	protected
multigratorXi	Controller	protected
multigratorXiT	Controller	protected
multigratorZeta	Controller	protected
nbondFreq	Controller	protected
net_dE	Controller	protected
net_dEdl_bond_1	Controller	protected
net_dEdl_bond_2	Controller	protected
net_dEdl_elec_1	Controller	protected
net_dEdl_elec_2	Controller	protected
net_dEdl_lj_1	Controller	protected
net_dEdl_lj_2	Controller	protected
Node class	Controller	friend
numDegFreedom	Controller	protected
origLattice	Controller	protected
outputExtendedSystem(int step)	Controller	protected
outputFepEnergy(int step)	Controller	protected
outputTiEnergy(int step)	Controller	protected
pairlistWarnings	Controller	protected
positionRescaleFactor	Controller	protected
ppbonded	Controller	protected
ppint	Controller	protected
ppnonbonded	Controller	protected
pressure	Controller	protected
pressure_amd	Controller	protected
pressure_avg	Controller	protected
pressure_nbond	Controller	protected
pressure_normal	Controller	protected
pressure_slow	Controller	protected
pressure_tavg	Controller	protected
pressureProfileAverage	Controller	protected
pressureProfileCount	Controller	protected
pressureProfileSlabs	Controller	protected
printDynamicsEnergies(int)	Controller	protected
printEnergies(int step, int minimize)	Controller	protected
printFepMessage(int)	Controller	protected
printMinimizeEnergies(int)	Controller	protected
printTiMessage(int)	Controller	protected
printTiming(int)	Controller	protected
random	Controller	protected
reassignVelocities(int)	Controller	protected
rebalanceLoad(int)	Controller	protected
receivePressure(int step, int minimize=0)	Controller	protected
recent_alchWork	Controller	protected
recent_dEdl_bond_1	Controller	protected
recent_dEdl_bond_2	Controller	protected
recent_dEdl_elec_1	Controller	protected
recent_dEdl_elec_2	Controller	protected
recent_dEdl_lj_1	Controller	protected
recent_dEdl_lj_2	Controller	protected
recent_TiNo	Controller	protected
recvCheckpointAck(checkpoint &cp)	Controller	protected
recvCheckpointReq(const char *key, int task, checkpoint &cp)	Controller	protected
reduction	Controller	protected
rescaleaccelMD(int step, int minimize=0)	Controller	protected
rescaleVelocities(int)	Controller	protected
rescaleVelocities_numTemps	Controller	protected
rescaleVelocities_sumTemps	Controller	protected
resumeAfterTraceBarrier(int)	Controller
run(void)	Controller
ScriptTcl class	Controller	friend
simParams	Controller	protected
slowFreq	Controller	protected
smooth2_avg	ControllerState	protected
smooth2_avg2	Controller	protected
state	Controller	protected
stepInFullRun	Controller	protected
stochRescale_count	Controller	protected
stochRescaleCoefficient()	Controller	protected
stochRescaleTimefactor	Controller	protected
stochRescaleVelocities(int)	Controller	protected
strainRate_old	Controller	protected
submit_reduction	Controller	protected
tavg_count	Controller	protected
tcoupleVelocities(int)	Controller	protected
temp_avg	Controller	protected
temperature	Controller	protected
terminate(void)	Controller	protected
tiFile	Controller	protected
TiNo	Controller	protected
totalEnergy	Controller	protected
totalEnergy0	Controller	protected
traceBarrier(int, int)	Controller	protected
virial_amd	Controller	protected
write_accelMDG_rest_file(int step_n, char type, int V_n, BigReal Vmax, BigReal Vmin, BigReal Vavg, BigReal sigmaV, BigReal M2, BigReal E, BigReal k, bool write_topic, bool lasttime)	Controller	protected
writeExtendedSystemData(int step, ofstream_namd &file)	Controller	protected
writeExtendedSystemLabels(ofstream_namd &file)	Controller	protected
writeFepEnergyData(int step, ofstream_namd &file)	Controller	protected
writeTiEnergyData(int step, ofstream_namd &file)	Controller	protected
xstFile	Controller	protected
~Controller(void)	Controller	virtual