Difference for ug/ug_colvars.tex from version 1.29 to 1.30

version 1.29version 1.30
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 } }
  
  
 \paragraph*{Usage for multiple--replica eABF.} \paragraph{Usage for multiple--replica eABF.}
 The eABF algorithm can be associated with a multiple--walker strategy \cite{Minoukadeh2010,Comer2014c} (\ref{sec:mw-ABF}). The eABF algorithm can be associated with a multiple--walker strategy \cite{Minoukadeh2010,Comer2014c} (\ref{sec:mw-ABF}).
 To run a multiple--replica eABF simulation, start a multiple-replica  To run a multiple--replica eABF simulation, start a multiple-replica 
 NAMD run (option \texttt{+replicas}) and set {\tt shared on} in the Colvars config file to enable  NAMD run (option \texttt{+replicas}) and set {\tt shared on} in the Colvars config file to enable 
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 \item \dupkey{outputEnergy}{\texttt{histogramRestraint}}{sec:colvarbias}{biasing and analysis methods} \item \dupkey{outputEnergy}{\texttt{histogramRestraint}}{sec:colvarbias}{biasing and analysis methods}
  
 \item % \item %
   \key %   \key 
     {lowerBoundary}{%     {lowerBoundary}{%
     \texttt{histogramRestraint}}{%     \texttt{histogramRestraint}}{%
     Lower boundary of the colvar grid}{%     Lower boundary of the colvar grid}{%
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   \simkey{upperBoundary}{\texttt{histogramRestraint}}{lowerBoundary}   \simkey{upperBoundary}{\texttt{histogramRestraint}}{lowerBoundary}
  
 \item % \item %
   \key %   \key
   {width}{%   {width}{%
     \texttt{histogramRestraint}}{%     \texttt{histogramRestraint}}{%
     Width of the colvar grid}{%     Width of the colvar grid}{%
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   }   }
  
 \item % \item %
   \keydef%   \keydef
   {gaussianSigma}{%   {gaussianSigma}{%
     \texttt{histogramRestraint}}{%     \texttt{histogramRestraint}}{%
     Standard deviation of the approximating Gaussian}{%     Standard deviation of the approximating Gaussian}{%
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   }   }
  
 \item % \item %
   \key%   \key
   {refHistogram}{%   {refHistogram}{%
     \texttt{histogramRestraint}}{%     \texttt{histogramRestraint}}{%
     Reference histogram $h_{0}(\xi)$}{%     Reference histogram $h_{0}(\xi)$}{%
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   }   }
  
 \item % \item %
   \key%   \key
   {refHistogramFile}{%   {refHistogramFile}{%
     \texttt{histogramRestraint}}{%     \texttt{histogramRestraint}}{%
     Reference histogram $h_{0}(\xi)$}{%     Reference histogram $h_{0}(\xi)$}{%


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