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Index
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Computer Simulation of Liquids.
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Dihedral angle principal component analysis of molecular dynamics
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P. H. Axelsen and D. Li.
Improved convergence in dual-topology free energy calculations
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A. Barducci, G. Bussi, and M. Parrinello.
Well-tempered metadynamics: A smoothly converging and tunable
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Accelerated molecular dynamics: a promising and efficient simulation
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for a polarizable force field based on the classical drude oscillator.
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Multilevel summation method for electrostatic force evaluation.
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Parametrized models of aqueous free energies of solvation based on
pairwise descreening of solute atomic charges from a dielectric medium.
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Overcoming free energy barriers using unconstrained molecular
dynamics simulations.
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Exploring multidimensional free energy landscapes using
time-dependent biases on collective variables.
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A generic implementation of replica exchange with solute tempering
(REST2) algorithm in NAMD for complex biophysical simulations.
197:304-311, 2015.
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Bridging the gap between thermodynamic integration and umbrella
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Exploring protein native states and large-scale conformational
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