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| % $RCSfile: ug_tutorial.tex,v $ | % $RCSfile: ug_tutorial.tex,v $ |
| % $Author: mbach $ $Locker: $ $State: Exp $ | % $Author: mbach $ $Locker: $ $State: Exp $ |
| % $Revision: 1.16 $ $Date: 2002/10/30 23:35:20 $ | % $Revision: 1.17 $ $Date: 2002/11/01 20:49:53 $ |
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| % DESCRIPTION: | % DESCRIPTION: |
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| \section{Rapid Introduction to \JMV} | \section{Rapid Introduction to \JMV} |
| If your computer is not already configured to use Java and Java3D, the first thing you will need to do is install them. See the Installation Guide for details. Once Java and Java3D are installed, you can view \JMV\ in a browser simply by visiting a web page that uses \JMV. Or, to run it as a standalone application, download and extract the \JMV\ applet from the main site \\(\htmladdnormallink{{\tt http://www.ks.uiuc.edu/Research/jmv/}}{http://www.ks.uiuc.edu/Research/jmv/}), | If your computer is not already configured to use Java and Java3D, the first thing you will need to do is install them. See the Installation Guide for details. Once Java and Java3D are installed, you can view \JMV\ in a browser simply by visiting a web page that uses \JMV. Or, to run it as a standalone application, download and extract the \JMV\ applet from the main site \\(\htmladdnormallink{{\tt http://www.ks.uiuc.edu/Research/jmv/}}{http://www.ks.uiuc.edu/Research/jmv/}), |
| go to the directory you extracted it in, and start it with the command ``java -classpath jmv-\JMVVER.jar \JMV''. Here, ``jmv-\JMVVER.jar'' may use a different number in place of ``\JMVVER'' depending on the version. | go to the directory you extracted it in, and start it with the command ``java -classpath jmv-\JMVVER.jar \JMV''. |
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| \section{Viewing a molecule: Titin} | \section{Viewing a molecule: Titin} |
| Once you have \JMV\ started, you can load a molecule by selecting ``Load a file'' from the ``File'' menu. This will bring up a dialog box asking for a file name. Type in ``1TIT'' and click ``Load file''. This will load the molecule Titin from the RCSB, a repository of molecular files. The screen should display ``Loading...'' indicating that it is currently loading the molecule, and then display it. You can move the molecule with the mouse buttons. For more detailed information on mouse movement, see the next chapter: ``User Interface Components''. | Once you have \JMV\ started, you can load a molecule by selecting ``Load a file'' from the ``File'' menu. This will bring up a dialog box asking for a file name. Type in ``1TIT'' and click ``Load file''. This will load the molecule Titin from the RCSB, a repository of molecular files. The screen should display ``Loading...'' indicating that it is currently loading the molecule, and then display it. You can move the molecule with the mouse buttons. For more detailed information on mouse movement, see the next chapter: ``User Interface Components''. |