| version 1.14 | version 1.15 |
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| % $RCSfile: ug_savestate.tex,v $ | % $RCSfile: ug_savestate.tex,v $ |
| % $Author: mbach $ $Locker: $ $State: Exp $ | % $Author: mbach $ $Locker: $ $State: Exp $ |
| % $Revision: 1.14 $ $Date: 2002/10/18 16:31:05 $ | % $Revision: 1.15 $ $Date: 2002/10/28 21:35:14 $ |
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| % DESCRIPTION: | % DESCRIPTION: |
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| BioCoRE, (\htmladdnormallink{{\tt http://www.ks.uiuc.edu/Research/biocore/}}{http://www.ks.uiuc.edu/Research/biocore/}), also uses JMV files. When in BioCoRE, you can open a PDB file in the Filesystem with JMV by clicking the ``Properties'' link on the right side of the file's entry. From the window that is displayed, select the ``View this molecule in JMV'' link. This will open the PDB file with JMV. To save a session to BioCoRE, select ``Save session to BioCoRE'' from the ``File'' menu. This will save the session to the Filesystem and to your local filesystem. If you selected the ``Save a JPEG of the JMV image?'' box, then a JPEG file of the molecule window will also be saved to the Filesystem and to your local filesystem. You can view saved JMV files in the same way as PDB files, by selecting the ``Properties'' link, and the ``View this molecule in JMV'' link in the pop-up window that is displayed. | BioCoRE, (\htmladdnormallink{{\tt http://www.ks.uiuc.edu/Research/biocore/}}{http://www.ks.uiuc.edu/Research/biocore/}), also uses JMV files. When in BioCoRE, you can open a PDB file in the Filesystem with JMV by clicking the ``Properties'' link on the right side of the file's entry. From the window that is displayed, select the ``View this molecule in JMV'' link. This will open the PDB file with JMV. To save a session to BioCoRE, select ``Save session to BioCoRE'' from the ``File'' menu. This will save the session to the Filesystem and to your local filesystem. If you selected the ``Save a JPEG of the JMV image?'' box, then a JPEG file of the molecule window will also be saved to the Filesystem and to your local filesystem. You can view saved JMV files in the same way as PDB files, by selecting the ``Properties'' link, and the ``View this molecule in JMV'' link in the pop-up window that is displayed. |
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| \section{JMV saved state file format} | \section{JMV saved state file format} |
| The format of the JMV saved-state file, with extension ``.jmv'', follows an XML-style format. The following tags may be used:\\ | The format of the JMV saved-state file, with extension ``.jmv'', follows an XML-style format. The following tags may be used: |
| \begin{itemize} | \begin{itemize} |
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| \BOLDLISTITEM{$<$JMVSAVEDSTATE$>${\em ...}$<$JMVSAVEDSTATE$>$}These are the tags that enclose the entire saved state file. Each of the following tags will be within these tags. | \BOLDLISTITEM{$<$JMVSAVEDSTATE$>${\em ...}$<$JMVSAVEDSTATE$>$}These are the tags that enclose the entire saved state file. Each of the following tags will be within these tags. |
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| \end{itemize} | \end{itemize} |
| \end{itemize} | \end{itemize} |
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| | An example file might look something like this: |
| An example file might look something like this:\\ | |
| \begin{verbatim} | \begin{verbatim} |
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| <?xml version=``1.0'' encoding=``utf-8''?> | <?xml version=``1.0'' encoding=``utf-8''?> |