(Answer) (Category) BioCoRE Collaboratory FAQ : (Category) Using the Collaboratory : (Category) Running VMD Publish and Sync :
VMD WAS working fine through the collaboratory, and then it quit. What happened?
1) When you started Netscape, if you got the warning that "Netscape has detected a lock file which may indicate that another user is running Netscape, etc..." this same warning box also mentions that "You may continue to use Netscape, but you will be unable to user the disk cache, global history, or YOUR PERSONAL CERTIFICATES. The security certificate that you get from us is considered one of your personal certificates, so it won't be in effect for this 'warned' netscape.
2) If you (or anyone with access to the files) have been "messing with" the netscape files, you could have just possibly messed something up in Netscape. Under unix, these files would be located in ~/.netscape and in Windows they are hidden better, but still accessible.
3) Something might have happened to VMD. Try going to a command prompt and typing 'vmd' and see if VMD starts. If not, you have a problem external to the collaboratory.
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