Atab (defined in Step_t) | Step_t | |
cleanup_force (defined in Step_t) | Step_t | |
cleanup_vel (defined in Step_t) | Step_t | |
coef (defined in Step_t) | Step_t | |
compute (defined in Step_t) | Step_t | |
dif_beta (defined in Step_t) | Step_t | |
dif_p (defined in Step_t) | Step_t | |
dif_q (defined in Step_t) | Step_t | |
doFixedAtoms (defined in Step_t) | Step_t | |
done (defined in Step_t) | Step_t | |
doRigidWaters (defined in Step_t) | Step_t | |
drudeBond (defined in Step_t) | Step_t | |
dt_over_qmass (defined in Step_t) | Step_t | |
dt_over_qmass_com (defined in Step_t) | Step_t | |
dt_over_qmass_dbond (defined in Step_t) | Step_t | |
dt_tau (defined in Step_t) | Step_t | |
errmsg (defined in Step_t) | Step_t | |
eta (defined in Step_t) | Step_t | |
eta_com (defined in Step_t) | Step_t | |
eta_dbond (defined in Step_t) | Step_t | |
f_com (defined in Step_t) | Step_t | |
f_dbond (defined in Step_t) | Step_t | |
fdf (defined in Step_t) | Step_t | |
h_mass (defined in Step_t) | Step_t | |
half_vel (defined in Step_t) | Step_t | |
is_drude (defined in Step_t) | Step_t | |
mass_com (defined in Step_t) | Step_t | |
mass_dbond (defined in Step_t) | Step_t | |
nh_qmass (defined in Step_t) | Step_t | |
nonPolarized (defined in Step_t) | Step_t | |
num_com (defined in Step_t) | Step_t | |
num_dbond (defined in Step_t) | Step_t | |
num_drudeBond (defined in Step_t) | Step_t | |
num_nonPolarized (defined in Step_t) | Step_t | |
o_mass (defined in Step_t) | Step_t | |
old_f (defined in Step_t) | Step_t | |
orderk (defined in Step_t) | Step_t | |
param (defined in Step_t) | Step_t | |
pos_com (defined in Step_t) | Step_t | |
pos_dbond (defined in Step_t) | Step_t | |
qmass_com (defined in Step_t) | Step_t | |
qmass_dbond (defined in Step_t) | Step_t | |
ra (defined in Step_t) | Step_t | |
random (defined in Step_t) | Step_t | |
rb (defined in Step_t) | Step_t | |
rc (defined in Step_t) | Step_t | |
refpos (defined in Step_t) | Step_t | |
scal_inv_mass (defined in Step_t) | Step_t | |
scal_inv_mass_com (defined in Step_t) | Step_t | |
scal_inv_mass_dbond (defined in Step_t) | Step_t | |
search_direction (defined in Step_t) | Step_t | |
sham (defined in Step_t) | Step_t | |
starting_position (defined in Step_t) | Step_t | |
system (defined in Step_t) | Step_t | |
tempkonst (defined in Step_t) | Step_t | |
tempkonst_com (defined in Step_t) | Step_t | |
tempkonst_dbond (defined in Step_t) | Step_t | |
twice_desired_ke (defined in Step_t) | Step_t | |
twice_desired_ke_com (defined in Step_t) | Step_t | |
twice_desired_ke_dbond (defined in Step_t) | Step_t | |
twoke (defined in Step_t) | Step_t | |
twoke_bath (defined in Step_t) | Step_t | |
twoke_com (defined in Step_t) | Step_t | |
twoke_dbond (defined in Step_t) | Step_t | |
u (defined in Step_t) | Step_t | |
vel_com (defined in Step_t) | Step_t | |
vel_dbond (defined in Step_t) | Step_t | |
xi (defined in Step_t) | Step_t | |
xi_com (defined in Step_t) | Step_t | |
xi_dbond (defined in Step_t) | Step_t |