Anton Arkhipov

Theoretical and Computational Biophysics Group
Beckman Institute, Room 3115
University of Illinois at Urbana-Champaign
405 N. Mathews
Urbana, IL 61801

Telephone: (217) 244-5883

Fax: (217) 244-6078

Email: anton@ks.uiuc.edu

Home Department: Physics

My CV:

cv.pdf ( 186k )

Education:

B.S. with Honors in Physics, Moscow Institute of Physics and Technology, 2002
M.S. with Honors in Physics, Moscow Institute of Physics and Technology, 2004

Research Interests:

CG Viruses flagellum
Coarse-grained models Structure and dynamics
of viruses		 Structure and function
of bacterial flagellum

AND

  • New representations and simulation techniques to describe the dynamics of quantum systems

Publications:

    Publications Database
  1. Four-scale description of membrane sculpting by BAR domains. Anton Arkhipov, Ying Yin, and Klaus Schulten. Biophysical Journal, 95, 2008. (September 1, 2008 issue).
  2. Using VMD - an introductory tutorial. Jen Hsin, Anton Arkhipov, Ying Yin, John E. Stone, Aleksei Aksimentiev, Jordi Cohen, John Eargle, Fatemeh Khalili-Araghi, Zaida Luthey-Schulten, Marcos Sotomayor, Emad Tajkhorshid, Elizabeth Villa, Yi Wang, David Wells, Dan Wright, and Klaus Schulten. Current Protocols - Bioinformatics, 2008. In press.
  3. Application of residue-based and shape-based coarse graining to biomolecular simulations. Peter L. Freddolino, Anton Arkhipov, Amy Y. Shih, Ying Yin, Zhongzhou Chen, and Klaus Schulten. In Gregory A. Voth, editor, Coarse-Graining of Condensed Phase and Biomolecular Systems. Chapman and Hall/CRC Press, Taylor and Francis Group, 2008. In press.
  4. Molecular modeling of the structural properties and formation of high-density lipoprotein particles. Amy Y. Shih, Peter L. Freddolino, Anton Arkhipov, Stephen G. Sligar, and Klaus Schulten. In Scott Feller, editor, Current Topics in Membranes: Computational Modeling of Membrane Bilayers. Elsevier, 2008. In press.
  5. Continuous fluorescence microphotolysis and correlation spectroscopy using 4Pi microscopy. Anton Arkhipov, Jana Hüve, Martin Kahms, Reiner Peters, and Klaus Schulten. Biophysical Journal, 93:4006-4017, 2007.
  6. Assembly of lipids and proteins into lipoprotein particles. Amy Y. Shih, Anton Arkhipov, Peter L. Freddolino, Stephen G. Sligar, and Klaus Schulten. Journal of Physical Chemistry B, 111:11095-11104, 2007.
  7. Assembly of lipoprotein particles revealed by coarse-grained molecular dynamics simulations. Amy Y. Shih, Peter L. Freddolino, Anton Arkhipov, and Klaus Schulten. Journal of Structural Biology, 157:579-592, 2007.
  8. Stability and dynamics of virus capsids described by coarse-grained modeling. Anton Arkhipov, Peter L. Freddolino, and Klaus Schulten. Structure, 14:1767-1777, 2006.
  9. Coarse-grained molecular dynamics simulations of a rotating bacterial flagellum. Anton Arkhipov, Peter L. Freddolino, Katsumi Imada, Keiichi Namba, and Klaus Schulten. Biophysical Journal, 91:4589-4597, 2006.
  10. Imaging the migration pathways for O2, CO, NO, and Xe inside myoglobin. Jordi Cohen, Anton Arkhipov, Rosemary Braun, and Klaus Schulten. Biophysical Journal, 91:1844-1857, 2006.
  11. The role of molecular modeling in bionanotechnology. Deyu Lu, Aleksei Aksimentiev, Amy Y. Shih, Eduardo Cruz-Chu, Peter L. Freddolino, Anton Arkhipov, and Klaus Schulten. Physical Biology, 3:S40-S53, 2006.
  12. Molecular dynamics simulations of the complete satellite tobacco mosaic virus. Peter L. Freddolino, Anton S. Arkhipov, Steven B. Larson, Alexander McPherson, and Klaus Schulten. Structure, 14:437-449, 2006.
  13. Coarse grained protein-lipid model with application to lipoprotein particles. Amy Y. Shih, Anton Arkhipov, Peter L. Freddolino, and Klaus Schulten. Journal of Physical Chemistry B, 110:3674-3684, 2006.

List of publications before joining the Theoretical and Computational Biophysics Group: here.

Awards

  • Jordan S. Asketh Fellowship (2008)
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