
****************************************
Date:	Wednesday January 15, 1997 @ 14:52
Author:	milind

Update of /Projects/l3/cvsroot/CVSROOT
In directory hamlet:/tmp_mnt/Home/p1/milind/modules

Modified Files:
	modules 
Log Message:
Added namd2 module and namd as an alias to namd2.


===================================================================
File: modules          	Status: Up-to-date

   Working revision:	1.2	Wed Jan 15 20:51:34 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/CVSROOT/modules,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday January 16, 1997 @ 12:29
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2

Modified Files:
	Makefile 
Log Message:
Modified Makefile and dc.pl to work with CVS.  In particular, the
src directory is never touched during compilation.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.30	Thu Jan 16 18:10:24 1997
   Repository revision:	1.30	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday January 16, 1997 @ 12:30
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Modified Files:
	dc.pl 
Log Message:
Modified Makefile and dc.pl to work with CVS.  In particular, the
src directory is never touched during compilation.


===================================================================
File: dc.pl            	Status: Up-to-date

   Working revision:	1.2	Thu Jan 16 17:54:20 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/dc.pl,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday January 16, 1997 @ 12:31
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2

Modified Files:
	Makefile 
Log Message:
Changed make clean and veryclean.  (Minor changing).


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.31	Thu Jan 16 18:31:05 1997
   Repository revision:	1.31	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday January 16, 1997 @ 14:00
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto83000139/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedExcl.C 
	ComputeNonbondedExcl.h ComputeNonbondedPair.C 
	ComputeNonbondedPair.h ComputeNonbondedSelf.C 
	ComputeNonbondedSelf.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h 
Log Message:
Added reduction calls to ComputeNonbondedSelf and ...Pair.
Also moved some code from ...Excl to ...Util.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.10	Thu Jan 16 19:59:56 1997
   Repository revision:	1.10	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.8	Thu Jan 16 18:59:55 1997
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.4	Thu Jan 16 20:00:03 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.10	Thu Jan 16 20:00:06 1997
   Repository revision:	1.10	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.6	Thu Jan 16 20:00:11 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.10	Thu Jan 16 20:00:16 1997
   Repository revision:	1.10	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.6	Thu Jan 16 20:00:21 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.6	Thu Jan 16 20:00:23 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.7	Thu Jan 16 20:00:25 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday January 16, 1997 @ 15:09
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Modified Files:
	ReductionMgr.C ReductionMgr.h 
Log Message:
Modified output of reduction manager to display data on destruction
(currently, it is not destroyed) and removed hard-coded warning
about too many data sends.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.12	Thu Jan 16 21:09:38 1997
   Repository revision:	1.12	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.9	Thu Jan 16 20:56:55 1997
   Repository revision:	1.9	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday January 16, 1997 @ 16:15
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto83000139/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Controller.C 
Log Message:
Now prints out all energies, in a "nice" form (imho).


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.18	Thu Jan 16 22:01:08 1997
   Repository revision:	1.18	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday January 17, 1997 @ 11:17
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Modified Files:
	ReductionMgr.C ReductionMgr.h 
Log Message:
Displays single reduction totals.
(Memory not freed yet since REDUCTION_LONG_RANGE is not used.)


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.13	Fri Jan 17 17:17:52 1997
   Repository revision:	1.13	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.10	Fri Jan 17 17:08:15 1997
   Repository revision:	1.10	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday January 17, 1997 @ 12:17
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeAngles.C 
Log Message:
Fixed bug, now total angle energy matches namd 1.X


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.13	Fri Jan 17 18:11:08 1997
   Repository revision:	1.13	/Projects/l3/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday January 17, 1997 @ 13:22
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Modified Files:
	ReductionMgr.C 
Log Message:
Changed output tags to contain tagstring.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.14	Fri Jan 17 19:22:11 1997
   Repository revision:	1.14	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday January 17, 1997 @ 13:24
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	Migration.h 
Log Message:

Minor changes to Migration.h - adding src,dst PatchID to MigrationElem


===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.2	Fri Jan 17 19:22:29 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Migration.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday January 17, 1997 @ 13:27
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Now energies are reported correctly, electrostatic energy agrees with
namd 1.X but Lennard-Jones is still off.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.11	Fri Jan 17 19:27:00 1997
   Repository revision:	1.11	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday January 17, 1997 @ 13:34
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Revision/Branch: 1.777

Modified Files:
	Makefile 
Log Message:


Internal CVS leveling release.  Start development code work
at 1.777.1.1.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.777	Thu Jan 16 18:31:30 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/Makefile,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday January 17, 1997 @ 13:37
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: 1.777

Modified Files:
	AtomMap.C AtomMap.h BOCgroup.h Box.h CollectionMaster.C 
	CollectionMaster.ci CollectionMaster.h CollectionMgr.C 
	CollectionMgr.ci CollectionMgr.h Communicate.C Communicate.h 
	CommunicateConverse.C CommunicateConverse.h CommunicatePVM.C 
	CommunicatePVM.h Compute.C Compute.ci Compute.h 
	ComputeAngles.C ComputeAngles.h ComputeAngles.inl 
	ComputeBonds.C ComputeBonds.h ComputeBonds.inl 
	ComputeDihedrals.C ComputeDihedrals.h ComputeDihedrals.inl 
	ComputeGeneral.C ComputeGeneral.h ComputeHomeAtoms.h 
	ComputeHomeTuples.C ComputeHomeTuples.h ComputeImpropers.C 
	ComputeImpropers.h ComputeMap.C ComputeMap.h ComputeMgr.C 
	ComputeMgr.ci ComputeMgr.h ComputeNonbondedBase.h 
	ComputeNonbondedExcl.C ComputeNonbondedExcl.h 
	ComputeNonbondedHack.h ComputeNonbondedPair.C 
	ComputeNonbondedPair.h ComputeNonbondedSelf.C 
	ComputeNonbondedSelf.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h ComputePatch.C ComputePatch.h 
	ComputePatchPair.C ComputePatchPair.h ConfigList.C 
	ConfigList.h Controller.C Controller.h Debug.h HBondParam.h 
	HomePatch.C HomePatch.h HomePatchTypes.h InfoStream.C 
	InfoStream.h Inform.C Inform.h IntList.h IntTree.C IntTree.h 
	LJTable.C LJTable.h Lattice.h LintList.h Message.C Message.h 
	MessageManager.C MessageManager.h MessageQueue.C 
	MessageQueue.h Migration.h Molecule.C Molecule.h Namd.C Namd.h 
	NamdState.C NamdState.h NamdTypes.h Node.C Node.ci Node.h 
	PDB.C PDB.h PDBData.C PDBData.h Parameters.C Parameters.h 
	ParseOptions.C ParseOptions.h Patch.C Patch.h PatchMap.C 
	PatchMap.h PatchMgr.C PatchMgr.ci PatchMgr.h ProxyMgr.C 
	ProxyMgr.ci ProxyMgr.h ProxyPatch.C ProxyPatch.h 
	ReductionMgr.C ReductionMgr.ci ReductionMgr.h Sequencer.C 
	Sequencer.h SimParameters.C SimParameters.h Vector.h 
	WorkDistrib.C WorkDistrib.ci WorkDistrib.h alanin 
	alanin.params alanin.pdb alanin.psf common.C common.h dc.pl 
	main.C main.ci main.h strlib.C strlib.h structures.h 
Log Message:


Internal CVS leveling release.  Start development code work
at 1.777.1.1.


===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:17 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/AtomMap.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: AtomMap.h        	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:18 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/AtomMap.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.777	Mon Jan 13 23:03:48 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/BOCgroup.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Box.h            	Status: Up-to-date

   Working revision:	1.777	Tue Sep 10 04:38:07 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Box.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.777	Tue Jan 14 00:09:27 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: CollectionMaster.ci	Status: Up-to-date

   Working revision:	1.777	Mon Jan 13 23:05:25 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/CollectionMaster.ci,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.777	Mon Jan 13 23:05:25 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/CollectionMaster.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.777	Mon Jan 13 23:26:19 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/CollectionMgr.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: CollectionMgr.ci 	Status: Up-to-date

   Working revision:	1.777	Mon Jan 13 19:19:55 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/CollectionMgr.ci,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.777	Mon Jan 13 23:26:19 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/CollectionMgr.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Communicate.C    	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:26 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Communicate.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Communicate.h    	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:27 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Communicate.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: CommunicateConverse.C	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:28 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/CommunicateConverse.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: CommunicateConverse.h	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:29 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/CommunicateConverse.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: CommunicatePVM.C 	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:30 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/CommunicatePVM.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: CommunicatePVM.h 	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:31 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/CommunicatePVM.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:32 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Compute.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Compute.ci       	Status: Up-to-date

   Working revision:	1.777	Wed Oct 16 08:22:39 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Compute.ci,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:33 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Compute.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:03:12 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeAngles.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:35 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeAngles.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeAngles.inl	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:36 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeAngles.inl,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.777	Thu Jan 16 00:55:50 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeBonds.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:37 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeBonds.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeBonds.inl 	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:38 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeBonds.inl,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.777	Thu Jan 16 00:55:53 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:40 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDihedrals.inl	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:41 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.inl,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGeneral.C 	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:41 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGeneral.h 	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:42 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeHomeAtoms.h	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:43 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeHomeAtoms.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.777	Thu Jan 16 00:55:55 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:45 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.777	Thu Jan 16 00:55:57 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:47 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:48 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:49 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:49 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMgr.ci    	Status: Up-to-date

   Working revision:	1.777	Sat Nov 30 00:49:34 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeMgr.ci,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:51 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeMgr.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:52 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.777	Thu Jan 16 19:59:59 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:54 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedHack.h	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:55 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedHack.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:56 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:57 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:58 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:59 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:35:59 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:00 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:01 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:02 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputePatch.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:03 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:04 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:05 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ConfigList.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ConfigList.h     	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:05 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ConfigList.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.777	Thu Jan 16 22:15:39 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Controller.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.777	Sat Jan 11 23:15:23 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Controller.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Debug.h          	Status: Up-to-date

   Working revision:	1.777	Fri Dec 27 20:29:05 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Debug.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: HBondParam.h     	Status: Up-to-date

   Working revision:	1.777	Tue Aug  6 20:38:38 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/HBondParam.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:10 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:10 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: HomePatchTypes.h 	Status: Up-to-date

   Working revision:	1.777	Tue Dec 17 22:12:30 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/HomePatchTypes.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: InfoStream.C     	Status: Up-to-date

   Working revision:	1.777	Wed Nov 13 20:57:22 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/InfoStream.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.777	Wed Dec 18 21:26:11 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/InfoStream.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Inform.C         	Status: Up-to-date

   Working revision:	1.777	Tue Aug  6 20:38:38 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Inform.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Inform.h         	Status: Up-to-date

   Working revision:	1.777	Tue Aug  6 20:38:38 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Inform.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: IntList.h        	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:15 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/IntList.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: IntTree.C        	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:16 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/IntTree.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: IntTree.h        	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:17 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/IntTree.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:18 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/LJTable.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: LJTable.h        	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:18 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/LJTable.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.777	Wed Nov 27 21:56:45 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Lattice.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: LintList.h       	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:20 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/LintList.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Message.C        	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:21 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Message.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Message.h        	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:22 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Message.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: MessageManager.C 	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:23 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/MessageManager.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: MessageManager.h 	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:24 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/MessageManager.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: MessageQueue.C   	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:24 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/MessageQueue.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: MessageQueue.h   	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:26 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/MessageQueue.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:22:29 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Migration.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:28 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Molecule.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:29 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Molecule.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:30 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Namd.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:30 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Namd.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:31 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/NamdState.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:32 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/NamdState.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:33 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/NamdTypes.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:34 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Node.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.777	Fri Dec 20 22:53:27 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Node.ci,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:35 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Node.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:36 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/PDB.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: PDB.h            	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:37 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/PDB.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: PDBData.C        	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:38 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/PDBData.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: PDBData.h        	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:39 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/PDBData.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:40 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Parameters.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:42 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Parameters.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:43 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ParseOptions.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ParseOptions.h   	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:44 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ParseOptions.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:45 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Patch.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:46 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Patch.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:47 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:47 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:48 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: PatchMgr.ci      	Status: Up-to-date

   Working revision:	1.777	Fri Dec 13 08:55:23 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/PatchMgr.ci,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:50 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:52 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ProxyMgr.ci      	Status: Up-to-date

   Working revision:	1.777	Tue Dec 17 23:58:02 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ProxyMgr.ci,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:53 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ProxyMgr.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:54 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ProxyPatch.h     	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:55 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ProxyPatch.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:36:56 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ReductionMgr.ci  	Status: Up-to-date

   Working revision:	1.777	Thu Dec 19 22:03:10 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ReductionMgr.ci,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 17:25:42 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.777	Tue Jan 14 20:21:04 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.777	Wed Jan 15 17:09:43 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Sequencer.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:37:01 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:37:02 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:37:03 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Vector.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:37:04 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.777	Fri Dec 13 08:53:21 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/WorkDistrib.ci,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:37:06 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: alanin           	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:03:13 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/alanin,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: alanin.params    	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:03:13 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/alanin.params,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: alanin.pdb       	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:03:13 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/alanin.pdb,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: alanin.psf       	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:03:14 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/alanin.psf,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:37:10 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/common.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:37:11 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/common.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: dc.pl            	Status: Up-to-date

   Working revision:	1.777	Thu Jan 16 18:30:00 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/dc.pl,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:37:13 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/main.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.777	Mon Jan 13 19:18:37 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/main.ci,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: main.h           	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:37:14 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/main.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: strlib.C         	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:37:15 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/strlib.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: strlib.h         	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:37:16 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/strlib.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: structures.h     	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:37:17 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/structures.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday January 17, 1997 @ 13:37
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src/Templates

Revision/Branch: 1.777

Modified Files:
	Queue.h README ResizeArray.C ResizeArray.h ResizeArrayIter.h 
	ResizeArrayPrimIter.h SortableResizeArray.C 
	SortableResizeArray.h SortedArray.C SortedArray.h 
	UniqueSortedArray.C UniqueSortedArray.h 
Log Message:


Internal CVS leveling release.  Start development code work
at 1.777.1.1.


===================================================================
File: Queue.h          	Status: Up-to-date

   Working revision:	1.777	Thu Dec  5 01:42:24 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Templates/Queue.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: README           	Status: Up-to-date

   Working revision:	1.777	Sun Aug  4 23:40:10 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Templates/README,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ResizeArray.C    	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:37:39 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.777	Fri Jan 17 19:37:40 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ResizeArrayIter.h	Status: Up-to-date

   Working revision:	1.777	Wed Jan 15 17:08:25 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayIter.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: ResizeArrayPrimIter.h	Status: Up-to-date

   Working revision:	1.777	Wed Jan 15 17:08:45 1997
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayPrimIter.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: SortableResizeArray.C	Status: Up-to-date

   Working revision:	1.777	Thu Aug 22 18:55:16 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: SortableResizeArray.h	Status: Up-to-date

   Working revision:	1.777	Thu Aug 22 18:55:16 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: SortedArray.C    	Status: Up-to-date

   Working revision:	1.777	Thu Aug 22 18:55:16 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Templates/SortedArray.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: SortedArray.h    	Status: Up-to-date

   Working revision:	1.777	Tue Sep  3 22:40:45 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Templates/SortedArray.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: UniqueSortedArray.C	Status: Up-to-date

   Working revision:	1.777	Sun Dec  1 02:24:04 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSortedArray.C,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist

===================================================================
File: UniqueSortedArray.h	Status: Up-to-date

   Working revision:	1.777	Thu Aug 22 18:55:16 1996
   Repository revision:	1.777	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSortedArray.h,v
   Sticky Tag:		1.777

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday January 17, 1997 @ 13:55
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: development-0-1

Modified Files:
	AtomMap.C 
Log Message:


Test for development-0-1 branch cvs commit


===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.777.2.1	Fri Jan 17 19:54:47 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/AtomMap.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday January 17, 1997 @ 13:56
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: development-0-1

Modified Files:
	AtomMap.C 
Log Message:


Another Test


===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.777.2.2	Fri Jan 17 19:56:26 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/AtomMap.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday January 17, 1997 @ 14:48
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Fixed Lennard-Jones error, now runs with identical energies for e timesteps.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.777.2.1	Fri Jan 17 20:48:01 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday January 19, 1997 @ 15:45
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ComputeHomeTuples.C Node.C 
Log Message:
Removed some debug messages.


===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.777.2.1	Fri Jan 17 21:09:20 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.777.2.1	Sun Jan 19 21:45:01 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Node.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 21, 1997 @ 10:22
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2

Revision/Branch: development-0-1

Modified Files:
	Makefile 
Log Message:
Makefile updated to use obj/ directory for .o files.



===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.777.2.1	Tue Jan 21 16:18:10 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/Makefile,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 21, 1997 @ 10:22
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ReductionMgr.C dc.pl 
Log Message:
Makefile updated to use obj/ directory for .o files.



===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.777.2.1	Tue Jan 21 16:22:32 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dc.pl            	Status: Up-to-date

   Working revision:	1.777.2.1	Tue Jan 21 16:08:12 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/dc.pl,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 21, 1997 @ 10:31
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2

Revision/Branch: development-0-1

Modified Files:
	Makefile 
Log Message:
Modified "make clean" to support the obj and inc directories.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.777.2.2	Tue Jan 21 16:30:00 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/Makefile,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 21, 1997 @ 10:35
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2

Revision/Branch: development-0-1

Modified Files:
	Makefile 
Log Message:
One final change in "make veryclean" -- the touch now uses $(DEPENDFILE).


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.777.2.3	Tue Jan 21 16:34:18 1997
   Repository revision:	1.777.2.3	/Projects/l3/cvsroot/namd2/Makefile,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 21, 1997 @ 14:52
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ReductionMgr.C ReductionMgr.h 
Log Message:
Renumbered the maxData fields (increasing from 0 rather than decreasing
to zero).  Instantiating the object automagically creates a queue entry
for sequence 0 -- should fix the "seq 0 deleted.  Found seq 1" error.
Removed (deactivated) some debug statements.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.777.2.2	Tue Jan 21 20:52:15 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.777.2.1	Tue Jan 21 19:46:19 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 21, 1997 @ 15:34
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ReductionMgr.C 
Log Message:
Changed queue insertions so sequences are never skipped.
(Hopefully.)


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.777.2.3	Tue Jan 21 21:34:14 1997
   Repository revision:	1.777.2.3	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 21, 1997 @ 16:06
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ReductionMgr.C ReductionMgr.h 
Log Message:
Hey Rocky!  Now for something completely different.  Queue gaps removed.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.777.2.4	Tue Jan 21 22:06:18 1997
   Repository revision:	1.777.2.4	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.777.2.2	Tue Jan 21 21:52:45 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 21, 1997 @ 16:38
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ReductionMgr.C 
Log Message:
More debugging for huge clusters of sparse data.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.777.2.5	Tue Jan 21 22:38:31 1997
   Repository revision:	1.777.2.5	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 21, 1997 @ 16:52
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ReductionMgr.C 
Log Message:
Ok.  All queue problems resolved. :-)  Milind tested and is pleased.
Queue now works for sparse data on large clusters.  Pe(0) removes the
queue elements at the correct time.
Changes made: disabled DebugM comments.



===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.777.2.6	Tue Jan 21 22:52:29 1997
   Repository revision:	1.777.2.6	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 21, 1997 @ 17:04
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: development-0-1

Modified Files:
	Compute.h HomePatch.C HomePatch.h Migration.h Patch.C Patch.h 
	PatchMap.h PatchMgr.C PatchMgr.ci PatchMgr.h 
Log Message:
Basic framework for atom migration placed into code.  - Non
functional since it is not called.  Works currently without
atom migration.


===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.777.2.1	Tue Jan 21 23:04:43 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Compute.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.777.2.1	Tue Jan 21 23:04:44 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.777.2.1	Tue Jan 21 23:04:45 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.777.2.1	Tue Jan 21 20:28:24 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Migration.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.777.2.1	Tue Jan 21 23:04:47 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Patch.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.777.2.1	Tue Jan 21 23:04:47 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Patch.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.777.2.1	Tue Jan 21 23:04:48 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.777.2.1	Tue Jan 21 23:04:49 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.ci      	Status: Up-to-date

   Working revision:	1.777.2.1	Tue Jan 21 00:21:22 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/PatchMgr.ci,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.777.2.1	Tue Jan 21 23:04:51 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 22, 1997 @ 14:24
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ReductionMgr.C 
Log Message:
Removed some debugging.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.777.2.7	Wed Jan 22 20:24:45 1997
   Repository revision:	1.777.2.7	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 22, 1997 @ 14:25
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2

Revision/Branch: development-0-1

Modified Files:
	Makefile 
Log Message:
Removed CXXFILES -- unused.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.777.2.4	Tue Jan 21 16:37:12 1997
   Repository revision:	1.777.2.4	/Projects/l3/cvsroot/namd2/Makefile,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 22, 1997 @ 14:25
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ProxyPatch.C 
Log Message:
Disabled debugging.


===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.777.2.1	Wed Jan 22 20:25:52 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 22, 1997 @ 15:41
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2

Revision/Branch: development-0-1

Modified Files:
	Makefile 
Log Message:
switched -g to -O


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.777.2.5	Wed Jan 22 21:38:23 1997
   Repository revision:	1.777.2.5	/Projects/l3/cvsroot/namd2/Makefile,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 22, 1997 @ 15:42
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ComputeNonbondedBase.h WorkDistrib.C WorkDistrib.h 
Log Message:
Larger patches, no two-away computes, small tweak to inner loop.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.777.2.2	Wed Jan 22 21:42:11 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.777.2.1	Wed Jan 22 21:42:13 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.777.2.1	Wed Jan 22 21:42:15 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 22, 1997 @ 16:04
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ReductionMgr.C 
Log Message:
Simplified the queue in order to find a segmentation fault.
Fault seems to occur when namd2 is run twice, very quickly.
(First run after compilation always works.)


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.777.2.8	Wed Jan 22 22:04:37 1997
   Repository revision:	1.777.2.8	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 22, 1997 @ 22:20
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Converted cutoff check to use register variables.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.777.2.3	Thu Jan 23 04:20:50 1997
   Repository revision:	1.777.2.3	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 22, 1997 @ 23:13
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Added pre-fetching of positions for cutoff check loop.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.777.2.4	Thu Jan 23 05:13:14 1997
   Repository revision:	1.777.2.4	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday January 23, 1997 @ 0:17
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ComputeNonbondedPair.C 
Log Message:
Check for empty patches and swap so larger patch is second.


===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.777.2.1	Thu Jan 23 06:17:34 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday January 23, 1997 @ 11:18
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/test
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/test

Log Message:
Directory /Projects/l3/cvsroot/namd2/test added to the repository
--> Using per-directory sticky tag `development-0-1'


[input file was '-']

****************************************
Date:	Thursday January 23, 1997 @ 11:19
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/test
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/test

Revision/Branch: development-0-1

Added Files:
	alanin alanin.params brH brH.params 
Log Message:
Test file directory


===================================================================
File: alanin           	Status: Up-to-date

   Working revision:	1.1.2.1	Thu Jan 23 17:16:49 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/test/Attic/alanin,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: alanin.params    	Status: Up-to-date

   Working revision:	1.1.2.1	Thu Jan 23 17:14:36 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/test/Attic/alanin.params,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1.2.1	Thu Jan 23 17:15:04 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/test/Attic/brH,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: brH.params       	Status: Up-to-date

   Working revision:	1.1.2.1	Thu Jan 23 17:15:05 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/test/Attic/brH.params,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Thursday January 23, 1997 @ 11:22
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/test
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/test

Revision/Branch: development-0-1

Added Files:
	er-gre nkill nodes 
Log Message:
Added to test suite


===================================================================
File: er-gre           	Status: Up-to-date

   Working revision:	1.1.2.1	Thu Jan 23 17:20:51 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/test/Attic/er-gre,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: nkill            	Status: Up-to-date

   Working revision:	1.1.2.1	Wed Jan 22 20:04:23 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/test/Attic/nkill,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: nodes            	Status: Up-to-date

   Working revision:	1.1.2.1	Wed Jan 22 21:18:14 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/test/Attic/nodes,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Thursday January 23, 1997 @ 11:24
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ReductionMgr.C 
Log Message:
Changed more debugging code.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.777.2.9	Thu Jan 23 17:24:01 1997
   Repository revision:	1.777.2.9	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday January 23, 1997 @ 11:44
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/test
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/test

Revision/Branch: development-0-1

Modified Files:
	brH er-gre 
Log Message:
Tried to make files work for namd2


===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1.2.2	Thu Jan 23 17:44:04 1997
   Repository revision:	1.1.2.2	/Projects/l3/cvsroot/namd2/test/Attic/brH,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: er-gre           	Status: Up-to-date

   Working revision:	1.1.2.2	Thu Jan 23 17:40:19 1997
   Repository revision:	1.1.2.2	/Projects/l3/cvsroot/namd2/test/Attic/er-gre,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Thursday January 23, 1997 @ 18:42
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2

Revision/Branch: development-0-1

Modified Files:
	Makefile 
Log Message:
Cleaned up depends to allow for compiling for K-boxes.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.777.2.6	Fri Jan 24 00:41:39 1997
   Repository revision:	1.777.2.6	/Projects/l3/cvsroot/namd2/Makefile,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday January 23, 1997 @ 20:28
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2

Revision/Branch: development-0-1

Modified Files:
	Makefile 
Log Message:
Added files for hydrogen bond parameter reading.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.777.2.7	Fri Jan 24 02:10:59 1997
   Repository revision:	1.777.2.7	/Projects/l3/cvsroot/namd2/Makefile,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday January 23, 1997 @ 20:30
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2/src

Revision/Branch: development-0-1

Modified Files:
	HBondParam.h NamdState.C Parameters.C Parameters.h 
Added Files:
	HBondPairData.h HBondParam.C VoidTree.C VoidTree.h 
Log Message:
Fixed bug where only first parameter file was read!
Added files for hydrogen bond parameter reading.


===================================================================
File: HBondPairData.h  	Status: Up-to-date

   Working revision:	1.1.2.1	Fri Jan 24 02:29:47 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/src/Attic/HBondPairData.h,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: HBondParam.C     	Status: Up-to-date

   Working revision:	1.1.2.1	Fri Jan 24 02:29:49 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/src/Attic/HBondParam.C,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: VoidTree.C       	Status: Up-to-date

   Working revision:	1.1.2.1	Fri Jan 24 00:44:37 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/src/Attic/VoidTree.C,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: VoidTree.h       	Status: Up-to-date

   Working revision:	1.1.2.1	Fri Jan 24 00:44:37 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/src/Attic/VoidTree.h,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: HBondParam.h     	Status: Up-to-date

   Working revision:	1.777.2.1	Fri Jan 24 02:29:50 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/HBondParam.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.777.2.1	Fri Jan 24 02:29:52 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/NamdState.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.777.2.1	Fri Jan 24 02:29:53 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Parameters.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.777.2.1	Fri Jan 24 02:29:55 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Parameters.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday January 24, 1997 @ 9:12
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/test
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/test

Revision/Branch: development-0-1

Modified Files:
	nkill 
Added Files:
	nkill2 
Log Message:
Scripts to kill undead namd2 processes left by Charm/converse.
nkill works with the old "nodes" file.
nkill2 works with the new "~/.nodelist" file.



===================================================================
File: nkill2           	Status: Up-to-date

   Working revision:	1.1.2.1	Fri Jan 24 15:05:47 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/test/Attic/nkill2,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: nkill            	Status: Up-to-date

   Working revision:	1.1.2.2	Fri Jan 24 14:54:42 1997
   Repository revision:	1.1.2.2	/Projects/l3/cvsroot/namd2/test/Attic/nkill,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Friday January 24, 1997 @ 10:54
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ReductionMgr.C ReductionMgr.h 
Log Message:
Disabled PANIC checking.  Seems to work without error.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.777.2.10	Fri Jan 24 16:54:08 1997
   Repository revision:	1.777.2.10	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.777.2.3	Fri Jan 24 16:37:10 1997
   Repository revision:	1.777.2.3	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday January 24, 1997 @ 11:48
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/test
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/test

Revision/Branch: development-0-1

Added Files:
	nhost nhost2 
Log Message:
Scripts to automagically allow xhost for each node.
(Great for dde!)
  nhost -- uses old nodes file
  nhost2 -- uses new ~/.nodelist file


===================================================================
File: nhost            	Status: Up-to-date

   Working revision:	1.1.2.1	Fri Jan 24 17:30:59 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/test/Attic/nhost,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: nhost2           	Status: Up-to-date

   Working revision:	1.1.2.1	Fri Jan 24 17:31:13 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/test/Attic/nhost2,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Friday January 24, 1997 @ 16:00
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ComputeGeneral.h ComputeHomeTuples.h ComputePatch.h 
	ComputePatchPair.h Namd.h Patch.C Patch.h 
Added Files:
	PositionBox.C PositionBox.h 
Log Message:
Changes for periodic boundary conditions.


===================================================================
File: PositionBox.C    	Status: Up-to-date

   Working revision:	1.1.2.1	Fri Jan 24 21:21:41 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/src/Attic/PositionBox.C,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionBox.h    	Status: Up-to-date

   Working revision:	1.1.2.1	Fri Jan 24 20:35:32 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/src/Attic/PositionBox.h,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeGeneral.h 	Status: Up-to-date

   Working revision:	1.777.2.1	Fri Jan 24 22:00:26 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.777.2.1	Fri Jan 24 22:00:28 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.777.2.1	Fri Jan 24 22:00:29 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputePatch.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.777.2.1	Fri Jan 24 22:00:31 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.777.2.1	Fri Jan 24 22:00:33 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Namd.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.777.2.2	Fri Jan 24 22:00:34 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/Patch.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.777.2.2	Fri Jan 24 22:00:35 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/Patch.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday January 24, 1997 @ 16:08
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2/src

Revision/Branch: development-0-1

Modified Files:
	Lattice.h PositionOwnerBox.C PositionOwnerBox.h 
Log Message:
Changes for periodic boundary conditions.


===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.777.2.1	Fri Jan 24 21:01:11 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Lattice.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PositionOwnerBox.C	Status: Up-to-date

   Working revision:	1.2.2.1	Fri Jan 24 21:16:29 1997
   Repository revision:	1.2.2.1	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.C,v
   Sticky Tag:		development-0-1 (branch: 1.2.2)

   Existing Tags:
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: PositionOwnerBox.h	Status: Up-to-date

   Working revision:	1.2.2.1	Fri Jan 24 20:39:23 1997
   Repository revision:	1.2.2.1	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.h,v
   Sticky Tag:		development-0-1 (branch: 1.2.2)

   Existing Tags:
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)


****************************************
Date:	Monday January 27, 1997 @ 10:52
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Revision/Branch: development-0-1

Modified Files:
	Compute.h 
Log Message:
Removed the hundreds of warnings about an unused variable.



===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 16:52:01 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/Compute.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 27, 1997 @ 14:09
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Revision/Branch: development-0-1

Modified Files:
	ReductionMgr.C 
Log Message:
Fixed reduction manager to work with +p1.



===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.777.2.11	Mon Jan 27 20:09:29 1997
   Repository revision:	1.777.2.11	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 27, 1997 @ 14:09
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/test
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/test

Revision/Branch: development-0-1

Modified Files:
	nodes 
Log Message:
New nodes file...


===================================================================
File: nodes            	Status: Up-to-date

   Working revision:	1.1.2.2	Mon Jan 27 16:57:06 1997
   Repository revision:	1.1.2.2	/Projects/l3/cvsroot/namd2/test/Attic/nodes,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday January 27, 1997 @ 15:11
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2

Revision/Branch: development-0-1

Modified Files:
	Makefile 
Log Message:



===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.777.2.8	Fri Jan 24 04:28:10 1997
   Repository revision:	1.777.2.8	/Projects/l3/cvsroot/namd2/Makefile,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 27, 1997 @ 15:11
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2/src

Revision/Branch: development-0-1

Added Files:
	ComputeDPMTA.C ComputeDPMTA.h ComputeHomePatches.C 
	ComputeHomePatches.h 
Log Message:
test


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1.2.1	Fri Jan 24 04:27:14 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/src/Attic/ComputeDPMTA.C,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1.2.1	Mon Jan 27 21:11:36 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/src/Attic/ComputeDPMTA.h,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.1.2.1	Fri Jan 24 04:40:52 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/src/Attic/ComputeHomePatches.C,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.1.2.1	Mon Jan 27 21:11:40 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/src/Attic/ComputeHomePatches.h,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday January 27, 1997 @ 16:45
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: development-0-1

Modified Files:
	AtomMap.h BOCgroup.h Box.h CollectionMaster.h CollectionMgr.h 
	Communicate.h CommunicateConverse.h CommunicatePVM.h Compute.C 
	Compute.h ComputeAngles.h ComputeBonds.h ComputeDihedrals.h 
	ComputeGeneral.h ComputeHomeAtoms.h ComputeHomeTuples.h 
	ComputeImpropers.h ComputeMap.h ComputeMgr.h 
	ComputeNonbondedBase.h ComputeNonbondedExcl.h 
	ComputeNonbondedHack.h ComputeNonbondedPair.h 
	ComputeNonbondedSelf.h ComputeNonbondedUtil.h ComputePatch.h 
	ComputePatchPair.h ConfigList.h Controller.h Debug.h 
	HBondParam.h HomePatch.C HomePatch.h HomePatchTypes.h 
	InfoStream.h Inform.h IntList.h IntTree.h LJTable.h Lattice.h 
	LintList.h Message.h MessageManager.h MessageQueue.h 
	Migration.h Molecule.h Namd.h NamdState.h NamdTypes.h Node.h 
	PDB.h PDBData.h Parameters.h ParseOptions.h Patch.h PatchMap.h 
	PatchMgr.h PositionOwnerBox.h ProxyMgr.C ProxyMgr.ci 
	ProxyMgr.h ProxyPatch.C ProxyPatch.h ReductionMgr.h 
	Sequencer.h SimParameters.h Vector.h WorkDistrib.h common.h 
	main.h strlib.h structures.h 
Log Message:
Basic Atom Migration Code added.
Added correct magic first line to .h files for xemacs to go to C++ mode.
Compiles and runs without migration turned on.


===================================================================
File: AtomMap.h        	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:44:49 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/AtomMap.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 21:48:23 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/BOCgroup.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Box.h            	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 21:48:24 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Box.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 21:48:25 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/CollectionMaster.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 21:48:33 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/CollectionMgr.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Communicate.h    	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:44:53 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Communicate.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicateConverse.h	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:44:53 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/CommunicateConverse.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicatePVM.h 	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:44:54 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/CommunicatePVM.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:44:55 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Compute.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.777.2.3	Mon Jan 27 22:44:56 1997
   Repository revision:	1.777.2.3	/Projects/l3/cvsroot/namd2/src/Compute.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:44:56 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeAngles.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:44:57 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeBonds.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:44:58 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGeneral.h 	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 22:44:59 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeAtoms.h	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:00 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeHomeAtoms.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 22:45:01 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:01 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:02 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:03 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeMgr.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.777.2.5	Mon Jan 27 22:45:04 1997
   Repository revision:	1.777.2.5	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:05 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedHack.h	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:06 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedHack.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:07 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:07 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:08 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 22:45:09 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/ComputePatch.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 22:45:10 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ConfigList.h     	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:11 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ConfigList.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 21:48:51 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Controller.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Debug.h          	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 21:48:52 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Debug.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HBondParam.h     	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 22:45:13 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/HBondParam.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 22:45:14 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 22:45:15 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatchTypes.h 	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 21:48:55 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/HomePatchTypes.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 21:48:56 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/InfoStream.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Inform.h         	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 21:48:56 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Inform.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IntList.h        	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:18 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/IntList.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IntTree.h        	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:19 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/IntTree.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.h        	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:20 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/LJTable.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 21:48:59 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/Lattice.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LintList.h       	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:21 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/LintList.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Message.h        	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:22 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Message.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MessageManager.h 	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:23 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/MessageManager.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MessageQueue.h   	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:24 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/MessageQueue.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 21:49:03 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/Migration.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:25 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Molecule.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 22:45:26 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/Namd.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:27 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/NamdState.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:28 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/NamdTypes.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:28 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Node.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.h            	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:29 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/PDB.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.h        	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:30 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/PDBData.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 22:45:31 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/Parameters.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.h   	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:32 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ParseOptions.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.777.2.3	Mon Jan 27 22:45:32 1997
   Repository revision:	1.777.2.3	/Projects/l3/cvsroot/namd2/src/Patch.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 22:45:33 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 22:45:34 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PositionOwnerBox.h	Status: Up-to-date

   Working revision:	1.2.2.2	Mon Jan 27 21:49:14 1997
   Repository revision:	1.2.2.2	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.h,v
   Sticky Tag:		development-0-1 (branch: 1.2.2)

   Existing Tags:
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:36 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.ci      	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 20:29:41 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ProxyMgr.ci,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:38 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ProxyMgr.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 22:45:39 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.h     	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:40 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/ProxyPatch.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.777.2.4	Mon Jan 27 21:49:16 1997
   Repository revision:	1.777.2.4	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 21:49:17 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Sequencer.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:42 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:43 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/Vector.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.777.2.2	Mon Jan 27 22:45:44 1997
   Repository revision:	1.777.2.2	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:45 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/common.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.h           	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:46 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/main.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: strlib.h         	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:47 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/strlib.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: structures.h     	Status: Up-to-date

   Working revision:	1.777.2.1	Mon Jan 27 22:45:47 1997
   Repository revision:	1.777.2.1	/Projects/l3/cvsroot/namd2/src/structures.h,v
   Sticky Tag:		development-0-1 (branch: 1.777.2)

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 27, 1997 @ 17:22
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2/src

Revision/Branch: development-0-1

Removed Files:
	PositionBox.h 
Log Message:
Trial Remove


===================================================================
File: no file PositionBox.h		Status: Needs Checkout

   Working revision:	No entry for PositionBox.h
   Repository revision:	1.1.2.2	/Projects/l3/cvsroot/namd2/src/Attic/PositionBox.h,v


****************************************
Date:	Monday January 27, 1997 @ 17:38
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory london:/export/projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: development-0-1

Added Files:
	Trial.h 
Log Message:
Trial add


===================================================================
File: Trial.h          	Status: Up-to-date

   Working revision:	1.1.2.1	Mon Jan 27 23:31:22 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/src/Attic/Trial.h,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday January 27, 1997 @ 17:44
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory london:/export/projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: development-0-1

Modified Files:
	Trial.h 
Log Message:
Added RCS lines


===================================================================
File: Trial.h          	Status: Up-to-date

   Working revision:	1.1.2.2	Mon Jan 27 23:44:42 1997
   Repository revision:	1.1.2.2	/Projects/l3/cvsroot/namd2/src/Attic/Trial.h,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday January 27, 1997 @ 18:01
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: development-0-1

Modified Files:
	VoidTree.C 
Log Message:
Trial


===================================================================
File: VoidTree.C       	Status: Up-to-date

   Working revision:	1.1.2.2	Mon Jan 27 23:59:41 1997
   Repository revision:	1.1.2.2	/Projects/l3/cvsroot/namd2/src/Attic/VoidTree.C,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday January 27, 1997 @ 18:03
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: development-0-1

Modified Files:
	HBondPairData.h PositionBox.h VoidTree.h 
Log Message:
Weird problems getting commit to work.  Part of fix
so far is to have group of files set to namd consistently


===================================================================
File: HBondPairData.h  	Status: Up-to-date

   Working revision:	1.1.2.2	Tue Jan 28 00:03:19 1997
   Repository revision:	1.1.2.2	/Projects/l3/cvsroot/namd2/src/Attic/HBondPairData.h,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionBox.h    	Status: Up-to-date

   Working revision:	1.1.2.3	Tue Jan 28 00:02:46 1997
   Repository revision:	1.1.2.3	/Projects/l3/cvsroot/namd2/src/Attic/PositionBox.h,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: VoidTree.h       	Status: Up-to-date

   Working revision:	1.1.2.2	Mon Jan 27 21:49:19 1997
   Repository revision:	1.1.2.2	/Projects/l3/cvsroot/namd2/src/Attic/VoidTree.h,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday January 27, 1997 @ 18:16
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: development-0-1

Modified Files:
	PositionBox.h 
Log Message:
Trial up rev


===================================================================
File: PositionBox.h    	Status: Up-to-date

   Working revision:	1.1.2.4	Tue Jan 28 00:02:46 1997
   Repository revision:	1.1.2.4	/Projects/l3/cvsroot/namd2/src/Attic/PositionBox.h,v
   Sticky Tag:		development-0-1 (branch: 1.1.2)

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday January 27, 1997 @ 18:29
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Revision/Branch: 1.778

Modified Files:
	Makefile 
Log Message:
internal release uplevel to 1.778


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:03 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/Makefile,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 27, 1997 @ 18:31
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: 1.778

Modified Files:
	AtomMap.C AtomMap.h BOCgroup.h Box.h CollectionMaster.C 
	CollectionMaster.ci CollectionMaster.h CollectionMgr.C 
	CollectionMgr.ci CollectionMgr.h Communicate.C Communicate.h 
	CommunicateConverse.C CommunicateConverse.h CommunicatePVM.C 
	CommunicatePVM.h Compute.C Compute.ci Compute.h 
	ComputeAngles.C ComputeAngles.h ComputeAngles.inl 
	ComputeBonds.C ComputeBonds.h ComputeBonds.inl 
	ComputeDihedrals.C ComputeDihedrals.h ComputeDihedrals.inl 
	ComputeGeneral.C ComputeGeneral.h ComputeHomeAtoms.h 
	ComputeHomeTuples.C ComputeHomeTuples.h ComputeImpropers.C 
	ComputeImpropers.h ComputeMap.C ComputeMap.h ComputeMgr.C 
	ComputeMgr.ci ComputeMgr.h ComputeNonbondedBase.h 
	ComputeNonbondedExcl.C ComputeNonbondedExcl.h 
	ComputeNonbondedHack.h ComputeNonbondedPair.C 
	ComputeNonbondedPair.h ComputeNonbondedSelf.C 
	ComputeNonbondedSelf.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h ComputePatch.C ComputePatch.h 
	ComputePatchPair.C ComputePatchPair.h ConfigList.C 
	ConfigList.h Controller.C Controller.h Debug.h HBondParam.h 
	HomePatch.C HomePatch.h HomePatchTypes.h InfoStream.C 
	InfoStream.h Inform.C Inform.h IntList.h IntTree.C IntTree.h 
	LJTable.C LJTable.h Lattice.h LintList.h Message.C Message.h 
	MessageManager.C MessageManager.h MessageQueue.C 
	MessageQueue.h Migration.h Molecule.C Molecule.h Namd.C Namd.h 
	NamdState.C NamdState.h NamdTypes.h Node.C Node.ci Node.h 
	PDB.C PDB.h PDBData.C PDBData.h Parameters.C Parameters.h 
	ParseOptions.C ParseOptions.h Patch.C Patch.h PatchMap.C 
	PatchMap.h PatchMgr.C PatchMgr.ci PatchMgr.h 
	PositionOwnerBox.C PositionOwnerBox.h ProxyMgr.C ProxyMgr.ci 
	ProxyMgr.h ProxyPatch.C ProxyPatch.h ReductionMgr.C 
	ReductionMgr.ci ReductionMgr.h Sequencer.C Sequencer.h 
	SimParameters.C SimParameters.h Vector.h WorkDistrib.C 
	WorkDistrib.ci WorkDistrib.h alanin alanin.params alanin.pdb 
	alanin.psf common.C common.h main.C main.ci main.h strlib.C 
	strlib.h structures.h 
Log Message:
internal release uplevel to 1.778


===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:29:46 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/AtomMap.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: AtomMap.h        	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:29:47 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/AtomMap.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:06 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/BOCgroup.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Box.h            	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:06 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Box.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:35:21 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.ci	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:35:21 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/CollectionMaster.ci,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:06 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/CollectionMaster.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:35:23 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/CollectionMgr.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.ci 	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:35:24 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/CollectionMgr.ci,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:07 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/CollectionMgr.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Communicate.C    	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:29:54 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Communicate.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Communicate.h    	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:29:54 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Communicate.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicateConverse.C	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:29:55 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/CommunicateConverse.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicateConverse.h	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:29:56 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/CommunicateConverse.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicatePVM.C 	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:29:57 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/CommunicatePVM.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicatePVM.h 	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:29:58 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/CommunicatePVM.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:29:59 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Compute.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.ci       	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:35:32 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Compute.ci,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:00 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Compute.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:35:34 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeAngles.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:02 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeAngles.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.inl	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:03 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeAngles.inl,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:35:36 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeBonds.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:04 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeBonds.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.inl 	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:05 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeBonds.inl,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:35:39 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:07 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.inl	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:08 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.inl,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGeneral.C 	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:08 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGeneral.h 	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:09 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeAtoms.h	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:10 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeHomeAtoms.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:13 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:12 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:35:46 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:14 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:15 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:15 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:16 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.ci    	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:35:50 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeMgr.ci,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:18 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeMgr.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:18 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:35:53 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:20 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedHack.h	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:21 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedHack.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:22 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:23 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:24 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:24 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:25 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:26 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:27 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:28 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputePatch.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:29 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:29 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:30 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ConfigList.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ConfigList.h     	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:31 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ConfigList.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:36:06 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Controller.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:19 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Controller.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Debug.h          	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:20 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Debug.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HBondParam.h     	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:34 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/HBondParam.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:35 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:36 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatchTypes.h 	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:23 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/HomePatchTypes.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.C     	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:36:12 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/InfoStream.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:23 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/InfoStream.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Inform.C         	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:36:14 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Inform.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Inform.h         	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:23 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Inform.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IntList.h        	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:41 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/IntList.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IntTree.C        	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:41 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/IntTree.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IntTree.h        	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:42 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/IntTree.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:43 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/LJTable.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.h        	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:44 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/LJTable.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:25 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Lattice.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LintList.h       	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:45 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/LintList.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Message.C        	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:46 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Message.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Message.h        	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:48 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Message.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MessageManager.C 	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:48 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/MessageManager.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MessageManager.h 	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:49 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/MessageManager.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MessageQueue.C   	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:50 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/MessageQueue.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MessageQueue.h   	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:51 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/MessageQueue.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:27 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Migration.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:53 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Molecule.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:54 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Molecule.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:55 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Namd.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:56 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Namd.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:56 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/NamdState.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:57 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/NamdState.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:58 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/NamdTypes.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:30:59 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Node.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:36:35 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Node.ci,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:00 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Node.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:01 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/PDB.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.h            	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:02 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/PDB.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.C        	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:03 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/PDBData.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.h        	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:04 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/PDBData.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:05 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Parameters.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:06 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Parameters.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:07 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ParseOptions.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.h   	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:08 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ParseOptions.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:09 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Patch.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:10 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Patch.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:10 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:11 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:12 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.ci      	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:35 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/PatchMgr.ci,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:14 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PositionOwnerBox.C	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:37 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: PositionOwnerBox.h	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:38 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:17 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.ci      	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:38 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ProxyMgr.ci,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:18 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ProxyMgr.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:19 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.h     	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:20 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ProxyPatch.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:21 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.ci  	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:36:57 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ReductionMgr.ci,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:41 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:36:59 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:41 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Sequencer.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:26 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:27 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:28 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Vector.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:29 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:05 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/WorkDistrib.ci,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:31 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: alanin           	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:06 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/alanin,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: alanin.params    	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:07 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/alanin.params,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: alanin.pdb       	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:08 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/alanin.pdb,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: alanin.psf       	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:09 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/alanin.psf,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:36 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/common.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:36 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/common.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:37 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/main.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:13 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/main.ci,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.h           	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:39 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/main.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: strlib.C         	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:39 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/strlib.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: strlib.h         	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:40 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/strlib.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: structures.h     	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:31:41 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/structures.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 27, 1997 @ 18:32
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src/Templates

Revision/Branch: 1.778

Modified Files:
	Box.C Box.h OwnerBox.C OwnerBox.h Queue.h README ResizeArray.C 
	ResizeArray.h ResizeArrayIter.h ResizeArrayPrimIter.h 
	SortableResizeArray.C SortableResizeArray.h SortedArray.C 
	SortedArray.h UniqueSortedArray.C UniqueSortedArray.h 
Log Message:
internal release uplevel to 1.778


===================================================================
File: Box.C            	Status: Up-to-date

   Working revision:	1.778	Tue Sep 10 04:28:42 1996
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/Box.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.1.2)
	development-0            	(revision: 1.1)

===================================================================
File: Box.h            	Status: Up-to-date

   Working revision:	1.778	Tue Sep 10 04:28:42 1996
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/Box.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.1.2)
	development-0            	(revision: 1.1)

===================================================================
File: OwnerBox.C       	Status: Up-to-date

   Working revision:	1.778	Sat Nov 30 00:42:02 1996
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/OwnerBox.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: OwnerBox.h       	Status: Up-to-date

   Working revision:	1.778	Tue Sep 10 04:28:53 1996
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/OwnerBox.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.1.2)
	development-0            	(revision: 1.1)

===================================================================
File: Queue.h          	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:37 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/Queue.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: README           	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:38 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/README,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArray.C    	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:32:08 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:32:09 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArrayIter.h	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:41 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayIter.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArrayPrimIter.h	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:41 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayPrimIter.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortableResizeArray.C	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:42 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortableResizeArray.h	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:43 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortedArray.C    	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:44 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/SortedArray.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortedArray.h    	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:45 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/SortedArray.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: UniqueSortedArray.C	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:45 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSortedArray.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: UniqueSortedArray.h	Status: Up-to-date

   Working revision:	1.778	Fri Jan 17 19:37:46 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSortedArray.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 27, 1997 @ 18:35
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: 1.778

Modified Files:
	dc.pl 
Log Message:
uplevel


===================================================================
File: dc.pl            	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:46 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/dc.pl,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 27, 1997 @ 18:51
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Added Files:
	ComputeDPMTA.C ComputeHomePatches.C ComputeHomePatches.h 
	HBondParam.C PositionBox.C PositionBox.h Trial.h VoidTree.C 
	VoidTree.h 
Log Message:
uplevel


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 00:26:10 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 00:26:12 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.C,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 00:51:47 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.h,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: HBondParam.C     	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 00:51:48 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/HBondParam.C,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionBox.C    	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 00:26:36 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/PositionBox.C,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionBox.h    	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 00:26:37 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/PositionBox.h,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: Trial.h          	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 00:51:51 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Trial.h,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: VoidTree.C       	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 00:26:43 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/VoidTree.C,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: VoidTree.h       	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 00:26:44 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/VoidTree.h,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday January 27, 1997 @ 18:54
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Added Files:
	HBondPairData.h 
Log Message:
Trial uplevel


===================================================================
File: HBondPairData.h  	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 00:54:31 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/HBondPairData.h,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday January 27, 1997 @ 18:55
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: 1.778

Modified Files:
	HBondPairData.h 
Log Message:
uplevel


===================================================================
File: HBondPairData.h  	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:55:48 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/HBondPairData.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday January 27, 1997 @ 18:58
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: 1.778

Modified Files:
	ComputeDPMTA.C 
Log Message:
uplevel


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:10 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday January 27, 1997 @ 19:00
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Added Files:
	ComputeDPMTA.h 
Log Message:
Adding This again


===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 01:00:11 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday January 27, 1997 @ 19:00
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: 1.778

Modified Files:
	ComputeDPMTA.h 
Log Message:
uplevel


===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 01:00:33 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v
   Sticky Tag:		1.778

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday January 27, 1997 @ 19:02
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: 1.778

Modified Files:
	VoidTree.C VoidTree.h 
Log Message:
uplevel


===================================================================
File: VoidTree.C       	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:43 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/VoidTree.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: VoidTree.h       	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:44 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/VoidTree.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday January 27, 1997 @ 19:04
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: 1.778

Modified Files:
	ComputeHomePatches.C ComputeHomePatches.h 
Log Message:
uplevel


===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:12 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 01:04:20 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday January 27, 1997 @ 19:04
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: 1.778

Modified Files:
	HBondParam.C PositionBox.C PositionBox.h Trial.h 
Log Message:
uplevel


===================================================================
File: HBondParam.C     	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 01:04:40 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/HBondParam.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionBox.C    	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:36 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/PositionBox.C,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionBox.h    	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 00:26:37 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/PositionBox.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: Trial.h          	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 01:04:42 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/src/Trial.h,v
   Sticky Tag:		1.778

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday January 27, 1997 @ 19:12
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Added Files:
	alanin alanin.params brH brH.params er-gre nhost nhost2 nkill 
	nkill2 nodes 
Log Message:
fix uplevel


===================================================================
File: alanin           	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 01:11:49 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/test/alanin,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: alanin.params    	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 01:11:49 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/test/alanin.params,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 01:11:49 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: brH.params       	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 01:11:50 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/test/brH.params,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: er-gre           	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 01:11:50 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/test/er-gre,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: nhost            	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 01:11:50 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/test/nhost,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: nhost2           	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 01:11:50 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/test/nhost2,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: nkill            	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 01:11:50 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/test/nkill,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: nkill2           	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 01:11:50 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/test/nkill2,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)

===================================================================
File: nodes            	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 01:11:50 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/test/nodes,v

   Existing Tags:
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday January 27, 1997 @ 19:22
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Added Files:
	alanin 
Log Message:
add


===================================================================
File: alanin           	Status: Up-to-date

   Working revision:	1.2	Tue Jan 28 01:20:50 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/test/alanin,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday January 27, 1997 @ 19:22
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Revision/Branch: 1.778

Modified Files:
	alanin 
Log Message:
uplevel


===================================================================
File: alanin           	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 01:20:50 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/test/alanin,v
   Sticky Tag:		1.778

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday January 27, 1997 @ 19:23
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Added Files:
	alanin.params brH brH.params er-gre nhost nhost2 nkill nkill2 
	nodes 
Log Message:
add


===================================================================
File: alanin.params    	Status: Up-to-date

   Working revision:	1.1	Tue Jan 28 01:23:00 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/test/alanin.params,v

   Existing Tags:
	No Tags Exist

===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1	Tue Jan 28 01:23:00 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	No Tags Exist

===================================================================
File: brH.params       	Status: Up-to-date

   Working revision:	1.1	Tue Jan 28 01:23:00 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/test/brH.params,v

   Existing Tags:
	No Tags Exist

===================================================================
File: er-gre           	Status: Up-to-date

   Working revision:	1.1	Tue Jan 28 01:23:00 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/test/er-gre,v

   Existing Tags:
	No Tags Exist

===================================================================
File: nhost            	Status: Up-to-date

   Working revision:	1.1	Tue Jan 28 01:23:00 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/test/nhost,v

   Existing Tags:
	No Tags Exist

===================================================================
File: nhost2           	Status: Up-to-date

   Working revision:	1.1	Tue Jan 28 01:23:00 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/test/nhost2,v

   Existing Tags:
	No Tags Exist

===================================================================
File: nkill            	Status: Up-to-date

   Working revision:	1.1	Tue Jan 28 01:23:01 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/test/nkill,v

   Existing Tags:
	No Tags Exist

===================================================================
File: nkill2           	Status: Up-to-date

   Working revision:	1.1	Tue Jan 28 01:23:01 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/test/nkill2,v

   Existing Tags:
	No Tags Exist

===================================================================
File: nodes            	Status: Up-to-date

   Working revision:	1.1	Tue Jan 28 01:23:01 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/test/nodes,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday January 27, 1997 @ 19:23
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Revision/Branch: 1.778

Modified Files:
	alanin.params brH brH.params er-gre nhost nhost2 nkill nkill2 
	nodes 
Log Message:
uplevel


===================================================================
File: alanin.params    	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 01:23:00 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/test/alanin.params,v
   Sticky Tag:		1.778

   Existing Tags:
	No Tags Exist

===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 01:23:00 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/test/brH,v
   Sticky Tag:		1.778

   Existing Tags:
	No Tags Exist

===================================================================
File: brH.params       	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 01:23:00 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/test/brH.params,v
   Sticky Tag:		1.778

   Existing Tags:
	No Tags Exist

===================================================================
File: er-gre           	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 01:23:00 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/test/er-gre,v
   Sticky Tag:		1.778

   Existing Tags:
	No Tags Exist

===================================================================
File: nhost            	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 01:23:00 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/test/nhost,v
   Sticky Tag:		1.778

   Existing Tags:
	No Tags Exist

===================================================================
File: nhost2           	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 01:23:00 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/test/nhost2,v
   Sticky Tag:		1.778

   Existing Tags:
	No Tags Exist

===================================================================
File: nkill            	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 01:23:01 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/test/nkill,v
   Sticky Tag:		1.778

   Existing Tags:
	No Tags Exist

===================================================================
File: nkill2           	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 01:23:01 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/test/nkill2,v
   Sticky Tag:		1.778

   Existing Tags:
	No Tags Exist

===================================================================
File: nodes            	Status: Up-to-date

   Working revision:	1.778	Tue Jan 28 01:23:01 1997
   Repository revision:	1.778	/Projects/l3/cvsroot/namd2/test/nodes,v
   Sticky Tag:		1.778

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday January 27, 1997 @ 19:54
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: development-1-1

Removed Files:
	Trial.h 
Log Message:
Removing this Trial file


===================================================================
File: no file Trial.h		Status: Needs Checkout

   Working revision:	No entry for Trial.h
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/Trial.h,v


****************************************
Date:	Tuesday January 28, 1997 @ 11:17
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Modified Files:
	ReductionMgr.C ReductionMgr.h 
Log Message:
Modified to count events before being removed.
No change in operating except it is now slightly faster and more efficient.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.779	Tue Jan 28 17:17:03 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.779	Tue Jan 28 17:09:40 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 28, 1997 @ 11:28
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Revision/Branch: development-1-1

Modified Files:
	PatchMap.C PatchMap.h SimParameters.C SimParameters.h 
Log Message:
First top-down changes for periodic boundary conditions, added now to
avoid conflicts with Ari's migration system.


===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.778.2.1	Tue Jan 28 17:28:49 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.778.2.1	Tue Jan 28 17:28:50 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.778.2.1	Tue Jan 28 17:28:51 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.778.2.1	Tue Jan 28 17:28:52 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 28, 1997 @ 12:11
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Home/p1/nealk/namd2/src

Modified Files:
	ReductionMgr.C ReductionMgr.h 
Log Message:
More cleanup.  Moved dataToSend to debugging code only.  No longer
necessary since eventCounter now controls remove.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.780	Tue Jan 28 18:11:05 1997
   Repository revision:	1.780	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.780	Tue Jan 28 18:01:31 1997
   Repository revision:	1.780	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday January 30, 1997 @ 12:42
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Corrected segmentation fault with er-gre.  langForceVals was not initialized
to NULL during instantiation.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.779	Thu Jan 30 18:42:46 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday January 31, 1997 @ 9:32
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Revision/Branch: development-1-1

Modified Files:
	Molecule.C 
Log Message:
Corrected unititialized langForceVals which cause er-gre to core dump.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.778.2.1	Fri Jan 31 15:32:47 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/Molecule.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 5, 1997 @ 16:16
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Revision/Branch: development-1-1

Modified Files:
	Makefile 
Log Message:
Added migration code


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.778.2.1	Tue Jan 28 02:36:04 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/Makefile,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 5, 1997 @ 16:18
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: development-1-1

Modified Files:
	Compute.C Compute.h ComputeAngles.C ComputeAngles.h 
	ComputeBonds.C ComputeBonds.h ComputeDihedrals.C 
	ComputeDihedrals.h ComputeHomePatches.C ComputeHomePatches.h 
	ComputeHomeTuples.C ComputeHomeTuples.h ComputeImpropers.C 
	ComputeImpropers.h ComputeMgr.C ComputeNonbondedExcl.C 
	ComputeNonbondedExcl.h ComputeNonbondedPair.h 
	ComputeNonbondedSelf.h ComputePatch.C ComputePatch.h 
	ComputePatchPair.C ComputePatchPair.h HomePatch.C HomePatch.h 
	Migration.h Node.C Patch.C Patch.h PatchMap.C PatchMap.h 
	PatchMgr.C PatchMgr.h ProxyMgr.C ProxyPatch.C Sequencer.C 
Log Message:
Added migration code - Currently the framework is
there with compiling code.  This version does
crash shortly after migration is complete.
Migration appears to complete, but Patches do
not appear to be left in a correct state.


===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:17:54 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/Compute.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:17:55 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/Compute.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 20:18:39 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeAngles.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:17:57 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeAngles.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 20:18:50 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeBonds.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:17:58 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeBonds.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 20:18:59 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:00 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 20:59:14 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:02 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 21:20:17 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:04 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 20:21:02 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:05 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:06 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 20:20:39 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:08 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:09 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:09 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:10 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:11 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputePatch.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:11 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:12 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:13 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:14 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Jan 29 23:12:12 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/Migration.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:15 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/Node.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:16 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/Patch.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:17 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/Patch.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.778.2.2	Wed Feb  5 22:18:18 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.778.2.2	Wed Feb  5 22:18:19 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:20 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:21 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:21 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 22:18:22 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 21:54:09 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 5, 1997 @ 16:20
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: development-1-1

Added Files:
	HomePatchList.h 
Log Message:
Additional File for migration -
this is along the lines of a clean-up - HomePatchList
is shared among different objects, and this deserves
a file of its own.


===================================================================
File: HomePatchList.h  	Status: Up-to-date

   Working revision:	1.1.2.1	Wed Feb  5 22:20:02 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/src/Attic/HomePatchList.h,v
   Sticky Tag:		development-1-1 (branch: 1.1.2)

   Existing Tags:
	development-1-1          	(branch: 1.1.2)


****************************************
Date:	Wednesday February 5, 1997 @ 19:52
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src/Templates

Revision/Branch: development-1-1

Modified Files:
	SortableResizeArray.C 
Log Message:
Sped up uniq() from O(n^2) to O(n).


===================================================================
File: SortableResizeArray.C	Status: Up-to-date

   Working revision:	1.778.2.1	Thu Feb  6 01:51:23 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 5, 1997 @ 20:21
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2

Revision/Branch: development-1-1

Modified Files:
	Makefile 
Log Message:
Added explicit dependencies for templates.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.778.2.2	Thu Feb  6 02:16:21 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/Makefile,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 5, 1997 @ 20:22
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src/Templates

Revision/Branch: development-1-1

Modified Files:
	SortableResizeArray.C 
Log Message:
Eliminated unnecessary copying from uniq().


===================================================================
File: SortableResizeArray.C	Status: Up-to-date

   Working revision:	1.778.2.2	Thu Feb  6 02:19:22 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 5, 1997 @ 20:35
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Revision/Branch: development-1-1

Modified Files:
	ComputeAngles.C ComputeBonds.C ComputeDihedrals.C 
	ComputeImpropers.C ComputeMap.C ComputeMap.h ComputeMgr.C 
	ComputeNonbondedPair.C ComputeNonbondedPair.h 
	ComputePatchPair.C ComputePatchPair.h Controller.C Lattice.h 
	Molecule.C NamdState.C PDB.C PDB.h Patch.C PatchMap.C 
	PatchMap.h PositionBox.C PositionOwnerBox.C Sequencer.C 
	SimParameters.C WorkDistrib.C 
Log Message:
Implemented periodic boundary conditions - may not work with
atom migration yet, but doesn't seem to alter calculation,
appears to work correctly when turned on.
NamdState chdir's to same directory as config file in argument.


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.778.2.2	Wed Feb  5 23:08:31 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/ComputeAngles.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.778.2.2	Wed Feb  5 23:08:32 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/ComputeBonds.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.778.2.2	Wed Feb  5 23:08:33 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.778.2.2	Wed Feb  5 23:08:35 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.778.2.1	Thu Feb  6 02:35:17 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.778.2.1	Thu Feb  6 02:35:18 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.778.2.2	Thu Feb  6 02:35:18 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.778.2.1	Thu Feb  6 02:35:19 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.778.2.2	Thu Feb  6 02:35:20 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.778.2.2	Thu Feb  6 02:35:21 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.778.2.2	Thu Feb  6 02:35:22 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Jan 29 22:20:06 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/Controller.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Jan 29 01:58:40 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/Lattice.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.778.2.2	Thu Feb  6 02:35:25 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/Molecule.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.778.2.1	Thu Feb  6 02:35:26 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/NamdState.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.778.2.1	Thu Feb  6 02:35:27 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/PDB.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.h            	Status: Up-to-date

   Working revision:	1.778.2.1	Thu Feb  6 02:35:28 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/PDB.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.778.2.2	Thu Feb  6 02:35:29 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/Patch.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.778.2.3	Thu Feb  6 02:35:30 1997
   Repository revision:	1.778.2.3	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.778.2.3	Thu Feb  6 02:35:31 1997
   Repository revision:	1.778.2.3	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PositionBox.C    	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Jan 29 03:08:46 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/PositionBox.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionOwnerBox.C	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Jan 29 03:07:35 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.778.2.2	Wed Feb  5 23:51:31 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.778.2.2	Thu Feb  6 02:35:34 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.778.2.1	Thu Feb  6 02:35:35 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 5, 1997 @ 22:19
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2

Revision/Branch: development-1-1

Modified Files:
	Makefile 
Log Message:
Added ComputeFullDirect.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.778.2.3	Thu Feb  6 03:13:37 1997
   Repository revision:	1.778.2.3	/Projects/l3/cvsroot/namd2/Makefile,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 5, 1997 @ 22:20
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Revision/Branch: development-1-1

Added Files:
	ComputeFullDirect.C ComputeFullDirect.h 
Log Message:
Added ComputeFullDirect.


===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1.2.1	Thu Feb  6 04:07:25 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/src/Attic/ComputeFullDirect.C,v
   Sticky Tag:		development-1-1 (branch: 1.1.2)

   Existing Tags:
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirect.h	Status: Up-to-date

   Working revision:	1.1.2.1	Thu Feb  6 04:20:25 1997
   Repository revision:	1.1.2.1	/Projects/l3/cvsroot/namd2/src/Attic/ComputeFullDirect.h,v
   Sticky Tag:		development-1-1 (branch: 1.1.2)

   Existing Tags:
	development-1-1          	(branch: 1.1.2)


****************************************
Date:	Wednesday February 5, 1997 @ 22:21
Author:	jim

Update of /Projects/l3/cvsroot/namd2/test
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/test

Revision/Branch: development-1-1

Modified Files:
	er-gre 
Log Message:
Commented out langevin dynamics.


===================================================================
File: er-gre           	Status: Up-to-date

   Working revision:	1.778.2.1	Thu Jan 30 20:09:56 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/test/er-gre,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Wednesday February 5, 1997 @ 23:00
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Revision/Branch: development-1-1

Modified Files:
	ComputeMgr.C NamdTypes.h WorkDistrib.C 
Log Message:
Added creation of full electrostatics objects.


===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.778.2.3	Thu Feb  6 05:00:43 1997
   Repository revision:	1.778.2.3	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.778.2.1	Thu Feb  6 05:00:44 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/NamdTypes.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.778.2.2	Thu Feb  6 05:00:45 1997
   Repository revision:	1.778.2.2	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 9:24
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Revision/Branch: development-1-1

Modified Files:
	ReductionMgr.C ReductionMgr.h 
Log Message:
Readded some changes lost when we branched.
Added more debuggging.
CthSuspend will repeat *when* the function fails.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.778.2.1	Thu Feb  6 15:24:45 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.778.2.1	Wed Feb  5 19:29:25 1997
   Repository revision:	1.778.2.1	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 9:30
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Revision/Branch: development-1-1

Modified Files:
	Makefile 
Log Message:
Added PVM and DPMTA



===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.778.2.4	Thu Feb  6 15:29:24 1997
   Repository revision:	1.778.2.4	/Projects/l3/cvsroot/namd2/Makefile,v
   Sticky Tag:		development-1-1 (branch: 1.778.2)

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 9:52
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Modified Files:
	Makefile 
Log Message:
Updating Revision Line, getting rid of branches

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:46:55 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 9:53
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	Compute.C Compute.h ComputeAngles.C ComputeAngles.h 
	ComputeBonds.C ComputeBonds.h ComputeDihedrals.C 
	ComputeDihedrals.h ComputeHomePatches.C ComputeHomePatches.h 
	ComputeHomeTuples.C ComputeHomeTuples.h ComputeImpropers.C 
	ComputeImpropers.h ComputeMap.C ComputeMap.h ComputeMgr.C 
	ComputeNonbondedExcl.C ComputeNonbondedExcl.h 
	ComputeNonbondedPair.C ComputeNonbondedPair.h 
	ComputeNonbondedSelf.h ComputePatch.C ComputePatch.h 
	ComputePatchPair.C ComputePatchPair.h Controller.C HomePatch.C 
	HomePatch.h Lattice.h Migration.h Molecule.C NamdState.C 
	NamdTypes.h Node.C PDB.C PDB.h Patch.C Patch.h PatchMap.C 
	PatchMap.h PatchMgr.C PatchMgr.h PositionBox.C 
	PositionOwnerBox.C ProxyMgr.C ProxyPatch.C ReductionMgr.C 
	ReductionMgr.h Sequencer.C SimParameters.C SimParameters.h 
	Trial.h WorkDistrib.C 
Added Files:
	ComputeFullDirect.C ComputeFullDirect.h HomePatchList.h 
Log Message:
Updating Revision Line, getting rid of branches

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.2	Thu Feb  6 15:47:00 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirect.h	Status: Up-to-date

   Working revision:	1.2	Thu Feb  6 15:52:55 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.h,v

   Existing Tags:
	development-1-1          	(branch: 1.1.2)

===================================================================
File: HomePatchList.h  	Status: Up-to-date

   Working revision:	1.2	Thu Feb  6 15:53:13 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/HomePatchList.h,v

   Existing Tags:
	development-1-1          	(branch: 1.1.2)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:52:48 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:52:48 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:46:58 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:52:50 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:46:58 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:52:51 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:46:59 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:52:53 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:47:02 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:52:56 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:47:03 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:52:58 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:47:04 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:52:59 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:00 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:02 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:03 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:47:06 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:04 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:05 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:06 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:07 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:07 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:08 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputePatch.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:09 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:10 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:47:10 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:11 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:12 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:47:12 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:47:13 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/Migration.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.780	Thu Feb  6 15:53:15 1997
   Repository revision:	1.780	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:16 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:17 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:18 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:18 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.h            	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:19 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/PDB.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:20 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:21 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:22 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:22 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:23 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:24 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PositionBox.C    	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:47:20 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/PositionBox.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionOwnerBox.C	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:47:20 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:26 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:27 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.781	Thu Feb  6 15:53:27 1997
   Repository revision:	1.781	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.781	Thu Feb  6 15:52:30 1997
   Repository revision:	1.781	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:47:23 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:30 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:31 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Trial.h          	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:32 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/Trial.h,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:53:32 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 9:53
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src/Templates

Modified Files:
	SortableResizeArray.C 
Log Message:
Updating Revision Line, getting rid of branches

===================================================================
File: SortableResizeArray.C	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:47:27 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.C,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 9:53
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Modified Files:
	er-gre 
Log Message:
Updating Revision Line, getting rid of branches

===================================================================
File: er-gre           	Status: Up-to-date

   Working revision:	1.779	Thu Feb  6 15:47:28 1997
   Repository revision:	1.779	/Projects/l3/cvsroot/namd2/test/er-gre,v

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Thursday February 6, 1997 @ 9:57
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Revision/Branch: 1.1000

Modified Files:
	Makefile 
Log Message:
Resetting CVS to merge branches back into the main trunk.
We will stick to main trunk development as suggested by CVS manual.
We will set up tags to track fixed points of development/release
as suggested by CVS manual - all praise the CVS manual.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:46:55 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/Makefile,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 9:59
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Revision/Branch: 1.1000

Modified Files:
	AtomMap.C AtomMap.h BOCgroup.h Box.h CollectionMaster.C 
	CollectionMaster.ci CollectionMaster.h CollectionMgr.C 
	CollectionMgr.ci CollectionMgr.h Communicate.C Communicate.h 
	CommunicateConverse.C CommunicateConverse.h CommunicatePVM.C 
	CommunicatePVM.h Compute.C Compute.ci Compute.h 
	ComputeAngles.C ComputeAngles.h ComputeAngles.inl 
	ComputeBonds.C ComputeBonds.h ComputeBonds.inl ComputeDPMTA.C 
	ComputeDPMTA.h ComputeDihedrals.C ComputeDihedrals.h 
	ComputeDihedrals.inl ComputeFullDirect.C ComputeFullDirect.h 
	ComputeGeneral.C ComputeGeneral.h ComputeHomeAtoms.h 
	ComputeHomePatches.C ComputeHomePatches.h ComputeHomeTuples.C 
	ComputeHomeTuples.h ComputeImpropers.C ComputeImpropers.h 
	ComputeMap.C ComputeMap.h ComputeMgr.C ComputeMgr.ci 
	ComputeMgr.h ComputeNonbondedBase.h ComputeNonbondedExcl.C 
	ComputeNonbondedExcl.h ComputeNonbondedHack.h 
	ComputeNonbondedPair.C ComputeNonbondedPair.h 
	ComputeNonbondedSelf.C ComputeNonbondedSelf.h 
	ComputeNonbondedUtil.C ComputeNonbondedUtil.h ComputePatch.C 
	ComputePatch.h ComputePatchPair.C ComputePatchPair.h 
	ConfigList.C ConfigList.h Controller.C Controller.h Debug.h 
	HBondPairData.h HBondParam.C HBondParam.h HomePatch.C 
	HomePatch.h HomePatchList.h HomePatchTypes.h InfoStream.C 
	InfoStream.h Inform.C Inform.h IntList.h IntTree.C IntTree.h 
	LJTable.C LJTable.h Lattice.h LintList.h Message.C Message.h 
	MessageManager.C MessageManager.h MessageQueue.C 
	MessageQueue.h Migration.h Molecule.C Molecule.h Namd.C Namd.h 
	NamdState.C NamdState.h NamdTypes.h Node.C Node.ci Node.h 
	PDB.C PDB.h PDBData.C PDBData.h Parameters.C Parameters.h 
	ParseOptions.C ParseOptions.h Patch.C Patch.h PatchMap.C 
	PatchMap.h PatchMgr.C PatchMgr.ci PatchMgr.h PositionBox.C 
	PositionBox.h PositionOwnerBox.C PositionOwnerBox.h ProxyMgr.C 
	ProxyMgr.ci ProxyMgr.h ProxyPatch.C ProxyPatch.h 
	ReductionMgr.C ReductionMgr.ci ReductionMgr.h Sequencer.C 
	Sequencer.h SimParameters.C SimParameters.h Trial.h Vector.h 
	VoidTree.C VoidTree.h WorkDistrib.C WorkDistrib.ci 
	WorkDistrib.h alanin alanin.params alanin.pdb alanin.psf 
	common.C common.h dc.pl main.C main.ci main.h strlib.C 
	strlib.h structures.h 
Log Message:
Resetting CVS to merge branches back into the main trunk.
We will stick to main trunk development as suggested by CVS manual.
We will set up tags to track fixed points of development/release
as suggested by CVS manual - all praise the CVS manual.


===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:27 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/AtomMap.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: AtomMap.h        	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:28 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/AtomMap.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:29:47 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/BOCgroup.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Box.h            	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:29:48 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Box.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:29:49 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.ci	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:29:50 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/CollectionMaster.ci,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:29:50 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/CollectionMaster.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:29:51 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/CollectionMgr.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.ci 	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:29:52 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/CollectionMgr.ci,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:29:53 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/CollectionMgr.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Communicate.C    	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:35 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Communicate.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Communicate.h    	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:36 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Communicate.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicateConverse.C	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:37 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/CommunicateConverse.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicateConverse.h	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:38 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/CommunicateConverse.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicatePVM.C 	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:39 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/CommunicatePVM.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicatePVM.h 	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:40 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/CommunicatePVM.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:41 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Compute.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.ci       	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:30:00 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Compute.ci,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:42 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Compute.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:46:58 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeAngles.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:44 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeAngles.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.inl	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:45 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeAngles.inl,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:46:58 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeBonds.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:47 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeBonds.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.inl 	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:48 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeBonds.inl,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:57:54 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:49 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:46:59 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:51 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.inl	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:52 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.inl,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:47:00 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirect.h	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:54 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeGeneral.C 	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:55 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGeneral.h 	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:56 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeAtoms.h	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:56 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeHomeAtoms.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:47:02 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:57:58 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:47:03 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:00 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:47:04 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:02 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:02 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:03 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:04 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.ci    	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:30:17 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeMgr.ci,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:05 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeMgr.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:06 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:47:06 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:08 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedHack.h	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:09 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedHack.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:10 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:11 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:12 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:13 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:13 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:14 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:15 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:16 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputePatch.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:17 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:18 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:19 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ConfigList.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ConfigList.h     	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:20 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ConfigList.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:47:10 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Controller.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:30:33 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Controller.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Debug.h          	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:30:33 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Debug.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HBondPairData.h  	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:23 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/HBondPairData.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: HBondParam.C     	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:24 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/HBondParam.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: HBondParam.h     	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:25 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/HBondParam.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:26 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:27 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatchList.h  	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:27 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/HomePatchList.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.1.2)

===================================================================
File: HomePatchTypes.h 	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:30:37 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/HomePatchTypes.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.C     	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:30:38 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/InfoStream.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:30:38 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/InfoStream.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Inform.C         	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:30:39 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Inform.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Inform.h         	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:30:40 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Inform.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IntList.h        	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:32 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/IntList.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IntTree.C        	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:33 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/IntTree.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IntTree.h        	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:34 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/IntTree.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:35 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/LJTable.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.h        	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:36 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/LJTable.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:47:12 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Lattice.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LintList.h       	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:37 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/LintList.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Message.C        	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:38 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Message.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Message.h        	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:39 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Message.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MessageManager.C 	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:40 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/MessageManager.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MessageManager.h 	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:40 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/MessageManager.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MessageQueue.C   	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:41 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/MessageQueue.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MessageQueue.h   	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:42 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/MessageQueue.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:47:13 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Migration.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:44 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Molecule.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:45 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Molecule.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:46 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Namd.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:47 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Namd.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:48 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/NamdState.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:48 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/NamdState.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:49 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/NamdTypes.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:50 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Node.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:31:00 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Node.ci,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:52 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Node.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:53 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/PDB.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.h            	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:54 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/PDB.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.C        	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:55 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/PDBData.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.h        	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:55 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/PDBData.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:57 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Parameters.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:58:59 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Parameters.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:00 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ParseOptions.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.h   	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:01 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ParseOptions.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:01 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Patch.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:02 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Patch.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:03 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:04 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:05 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.ci      	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:31:13 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/PatchMgr.ci,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:07 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PositionBox.C    	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:47:20 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/PositionBox.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionBox.h    	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 01:04:42 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/PositionBox.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionOwnerBox.C	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:47:20 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: PositionOwnerBox.h	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:31:16 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:11 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.ci      	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:31:18 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ProxyMgr.ci,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:13 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ProxyMgr.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:13 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.h     	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:14 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ProxyPatch.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:15 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.ci  	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:31:22 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ReductionMgr.ci,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:52:30 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:47:23 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:31:24 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Sequencer.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:20 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:21 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Trial.h          	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:22 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Trial.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:23 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Vector.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: VoidTree.C       	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 01:02:02 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/VoidTree.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: VoidTree.h       	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 01:02:03 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/VoidTree.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:26 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:31:30 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/WorkDistrib.ci,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:28 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: alanin           	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:31:32 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/alanin,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: alanin.params    	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:31:32 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/alanin.params,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: alanin.pdb       	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:31:33 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/alanin.pdb,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: alanin.psf       	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:31:34 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/alanin.psf,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:33 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/common.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:33 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/common.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dc.pl            	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:35:06 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/dc.pl,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:35 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/main.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:31:38 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/main.ci,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.h           	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:37 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/main.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: strlib.C         	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:38 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/strlib.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: strlib.h         	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:39 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/strlib.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: structures.h     	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:59:39 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/structures.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 10:00
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src/Templates

Revision/Branch: 1.1000

Modified Files:
	Box.C Box.h OwnerBox.C OwnerBox.h Queue.h README ResizeArray.C 
	ResizeArray.h ResizeArrayIter.h ResizeArrayPrimIter.h 
	SortableResizeArray.C SortableResizeArray.h SortedArray.C 
	SortedArray.h UniqueSortedArray.C UniqueSortedArray.h 
Log Message:
Resetting CVS to merge branches back into the main trunk.
We will stick to main trunk development as suggested by CVS manual.
We will set up tags to track fixed points of development/release
as suggested by CVS manual - all praise the CVS manual.


===================================================================
File: Box.C            	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:32:03 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/Box.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)
	development-0            	(revision: 1.1)

===================================================================
File: Box.h            	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:32:04 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/Box.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)
	development-0            	(revision: 1.1)

===================================================================
File: OwnerBox.C       	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:32:05 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/OwnerBox.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: OwnerBox.h       	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:32:06 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/OwnerBox.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)
	development-0            	(revision: 1.1)

===================================================================
File: Queue.h          	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:32:07 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/Queue.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: README           	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:32:07 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/README,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArray.C    	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 16:00:37 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 16:00:38 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArrayIter.h	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:32:10 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayIter.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArrayPrimIter.h	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:32:10 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayPrimIter.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortableResizeArray.C	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:47:27 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortableResizeArray.h	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:32:12 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortedArray.C    	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:32:13 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/SortedArray.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortedArray.h    	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:32:14 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/SortedArray.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: UniqueSortedArray.C	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:32:14 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSortedArray.C,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: UniqueSortedArray.h	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 00:32:15 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSortedArray.h,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 10:00
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Revision/Branch: 1.1000

Modified Files:
	alanin alanin.params brH brH.params er-gre nhost nhost2 nkill 
	nkill2 nodes 
Log Message:
Resetting CVS to merge branches back into the main trunk.
We will stick to main trunk development as suggested by CVS manual.
We will set up tags to track fixed points of development/release
as suggested by CVS manual - all praise the CVS manual.


===================================================================
File: alanin           	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 01:22:16 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/test/alanin,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: alanin.params    	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 01:23:43 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/test/alanin.params,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 01:23:43 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/test/brH,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: brH.params       	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 01:23:44 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/test/brH.params,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: er-gre           	Status: Up-to-date

   Working revision:	1.1000	Thu Feb  6 15:47:28 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/test/er-gre,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: nhost            	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 01:23:45 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/test/nhost,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: nhost2           	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 01:23:46 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/test/nhost2,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: nkill            	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 01:23:47 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/test/nkill,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: nkill2           	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 01:23:47 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/test/nkill2,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: nodes            	Status: Up-to-date

   Working revision:	1.1000	Tue Jan 28 01:23:48 1997
   Repository revision:	1.1000	/Projects/l3/cvsroot/namd2/test/nodes,v
   Sticky Tag:		1.1000

   Existing Tags:
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Thursday February 6, 1997 @ 10:53
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Modified Files:
	Makefile 
Log Message:
Minor tweek for compiling - left out DPMTA also


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1001	Thu Feb  6 16:25:43 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 10:53
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	ComputeMgr.C ReductionMgr.C 
Log Message:
Minor tweek for compiling - some inconsistent lines on merge


===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1001	Thu Feb  6 16:53:34 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1001	Thu Feb  6 16:53:35 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 11:25
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta

Log Message:
Directory /Projects/l3/cvsroot/namd2/dpmta added to the repository


[input file was '-']

****************************************
Date:	Thursday February 6, 1997 @ 11:26
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Modified Files:
	Makefile 
Log Message:
Now includes DPMTA directory.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1002	Thu Feb  6 17:25:19 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 11:27
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta

Added Files:
	Makefile Makefile.cray README dpmta.h dpmta_cell.h 
	dpmta_direct.c dpmta_error.c dpmta_mastiface.c 
	dpmta_mastinit.c dpmta_mastiter.c dpmta_pvm.h dpmta_slave.c 
	dpmta_slave.h dpmta_slvclean.c dpmta_slvcomm.c 
	dpmta_slvcompute.c dpmta_slvmacro.c dpmta_slvmcalc.c 
	dpmta_slvmisc.c dpmta_slvmkcell.c dpmta_slvmkhl.c 
	dpmta_slvmkiil.c dpmta_slvmkil.c dpmta_slvmkil.h 
	dpmta_slvpcalc.c dpmta_slvscale.c dpmta_slvstart.c 
	dpmta_t3dlib.c dpmta_test.c dpmta_test2.c dpmta_test2b.c 
	dpmta_test3.c dpmta_test4.c dpmta_testdump.c dpmta_timer.h 
	dpmta_version.h 
Log Message:
Adding dpmta directory.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:03 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile.cray    	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:04 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/Makefile.cray,v

   Existing Tags:
	No Tags Exist

===================================================================
File: README           	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:04 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/README,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta.h          	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:06 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_cell.h     	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:07 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_cell.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_direct.c   	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:08 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_direct.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_error.c    	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:10 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_error.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastiface.c	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:11 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_mastiface.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastinit.c 	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:12 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_mastinit.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastiter.c 	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:13 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_mastiter.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_pvm.h      	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:14 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_pvm.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slave.c    	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:15 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slave.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slave.h    	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:16 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slave.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvclean.c 	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:17 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slvclean.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvcomm.c  	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slvcomm.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvcompute.c	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:22 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slvcompute.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmacro.c 	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:25 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slvmacro.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmcalc.c 	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:27 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slvmcalc.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmisc.c  	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:29 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slvmisc.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkcell.c	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:30 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slvmkcell.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkhl.c  	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:31 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slvmkhl.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkiil.c 	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:33 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slvmkiil.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkil.c  	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:34 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slvmkil.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkil.h  	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:36 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slvmkil.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvpcalc.c 	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:38 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slvpcalc.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvscale.c 	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:39 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slvscale.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvstart.c 	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:40 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_slvstart.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_t3dlib.c   	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:41 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_t3dlib.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test.c     	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:42 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_test.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test2.c    	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:43 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_test2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test2b.c   	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:44 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_test2b.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test3.c    	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:45 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_test3.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test4.c    	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:47 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_test4.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_testdump.c 	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:48 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_testdump.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_timer.h    	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:48 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_timer.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_version.h  	Status: Up-to-date

   Working revision:	1.1	Thu Feb  6 17:27:50 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta/dpmta_version.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday February 6, 1997 @ 12:05
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	HomePatch.C Patch.C ReductionMgr.C 
Log Message:
Modified (added some, turned off others) debug statements.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1001	Thu Feb  6 18:05:28 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1001	Thu Feb  6 18:05:29 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1002	Thu Feb  6 18:05:29 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 15:20
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Patch.C HomePatch.C 
Log Message:
Fixed a couple of atom migration bugs.


===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1002	Thu Feb  6 21:20:49 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1002	Thu Feb  6 21:20:50 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 15:46
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Removed Files:
	Box.h 
Log Message:
Old code (garbage) removed.


===================================================================
File: no file Box.h		Status: Needs Checkout

   Working revision:	No entry for Box.h
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Attic/Box.h,v


****************************************
Date:	Thursday February 6, 1997 @ 15:56
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeHomeTuples.C ProxyMgr.C 
Log Message:
Fixed bugs.


===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1001	Thu Feb  6 21:36:18 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1001	Thu Feb  6 21:56:34 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 17:25
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Patch.C HomePatch.C 
Log Message:
Fixed bugs.


===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1003	Thu Feb  6 23:25:06 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1003	Thu Feb  6 23:25:07 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 1997 @ 23:42
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	AtomMap.C AtomMap.h HomePatch.C Patch.C Patch.h ProxyPatch.C 
	Sequencer.C 
Log Message:
Some bug fixing - atom migration on one node works
Atom migration on multiple nodes gets SIGSEGV


===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 05:42:28 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/AtomMap.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: AtomMap.h        	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 05:42:29 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/AtomMap.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1004	Fri Feb  7 05:42:30 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1004	Fri Feb  7 05:42:30 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 05:42:31 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 05:42:32 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 04:16:42 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 7, 1997 @ 1:50
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	PatchMgr.C ComputePatchPair.C 
Log Message:
Removed debug messages.


===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 07:50:22 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 07:50:23 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 7, 1997 @ 1:51
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
pInit aliases p, leading to problems.  I commented out any add or del
involving it.  Now seems to integrate correctly.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1005	Fri Feb  7 07:51:42 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 7, 1997 @ 10:49
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	AtomMap.C Patch.C ProxyPatch.C 
Log Message:
Fixing bugs that affect parallel atom migration.


===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1002	Fri Feb  7 16:49:26 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/AtomMap.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1005	Fri Feb  7 16:49:28 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1002	Fri Feb  7 16:49:29 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 7, 1997 @ 10:56
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	PatchMap.C PatchMap.h 
Log Message:
Added Origin() to return origin.


===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 16:56:50 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 16:56:52 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 7, 1997 @ 11:30
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeFullDirect.C 
Log Message:
Made implicit register int variables into BigReal.


===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 17:28:42 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)


****************************************
Date:	Friday February 7, 1997 @ 11:39
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	ComputeHomeTuples.C ComputeMgr.C ComputeMgr.h 
	ComputeNonbondedSelf.h HomePatch.C Migration.h PatchMap.C 
	ProxyMgr.C ProxyPatch.C WorkDistrib.C 
Log Message:
More debugging for atomMigration.
Using -w on CC got us some minor fixes
using purify got us a major memory problem due to bad sizing of dummy force


===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1002	Fri Feb  7 17:21:32 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1002	Fri Feb  7 17:39:36 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 17:39:37 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 17:39:37 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1006	Fri Feb  7 17:39:38 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 17:09:02 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Migration.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1002	Fri Feb  7 17:39:40 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1002	Fri Feb  7 17:39:40 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1003	Fri Feb  7 17:39:41 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 17:39:42 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 7, 1997 @ 16:27
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedExcl.C 
Log Message:
Initialized dummy array to keep Purify happy.


===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 22:22:34 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 7, 1997 @ 16:52
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeMap.C ComputeMap.h PatchMap.C 
Log Message:
Eliminated use of nAtomBased and uninitialized memory reads.


===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 22:52:14 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1001	Fri Feb  7 22:52:15 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1003	Fri Feb  7 22:52:16 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 10, 1997 @ 2:14
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	structures.h Molecule.h Molecule.C 
Log Message:
Fixed problem with exclusions where both modified and unmodified
versions of the same exclusion could be placed in the list, causing
one to be selected more or less randomly.  Also caused different
results on different numbers of processors.


===================================================================
File: structures.h     	Status: Up-to-date

   Working revision:	1.1001	Mon Feb 10 08:14:35 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/structures.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1001	Mon Feb 10 08:14:36 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1001	Mon Feb 10 08:14:37 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 10, 1997 @ 2:17
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	HomePatch.C HomePatch.h 
Log Message:
Commented out sending and allocation of unused data.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1007	Mon Feb 10 08:17:30 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1001	Mon Feb 10 08:17:30 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 10, 1997 @ 2:26
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ProxyPatch.C 
Log Message:
Turned off debugging.


===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1004	Mon Feb 10 08:26:03 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 10, 1997 @ 2:30
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedExcl.C 
Log Message:
Now handles periodic boundaries correctly (I forgot this when I was
changing Bonds, Angles, etc.) but a bit of a hack, needs cleaning up.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1001	Mon Feb 10 08:30:28 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1002	Mon Feb 10 08:28:46 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 10, 1997 @ 13:36
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeDPMTA.h 
Log Message:
Added DPMTA stuff.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1001	Mon Feb 10 15:33:14 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1001	Mon Feb 10 19:36:37 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Monday February 10, 1997 @ 13:43
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Added migration flag for easy switching.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1002	Mon Feb 10 19:43:24 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 10, 1997 @ 13:44
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	Controller.C HomePatch.C ReductionMgr.C 
Log Message:
More debugging code.  Corrected HomePatch/Sequencer awaken/suspend bug.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1001	Thu Feb  6 19:40:32 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1008	Mon Feb 10 19:44:29 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1003	Mon Feb 10 19:44:30 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 11, 1997 @ 10:31
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	HomePatch.C Sequencer.C Sequencer.h 
Log Message:
Using a flag to determine suspend/awaken in sequencer.
Migration turned off (for now).


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1009	Tue Feb 11 16:31:48 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1003	Tue Feb 11 16:30:01 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 11 16:02:00 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 11, 1997 @ 11:15
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	PositionOwnerBox.C PositionOwnerBox.h 
Log Message:
Fixed problems with isOpen() (not used anyway).


===================================================================
File: PositionOwnerBox.C	Status: Up-to-date

   Working revision:	1.1001	Mon Feb 10 17:07:28 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: PositionOwnerBox.h	Status: Up-to-date

   Working revision:	1.1001	Mon Feb 10 17:07:08 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)


****************************************
Date:	Tuesday February 11, 1997 @ 11:18
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src/Templates

Modified Files:
	OwnerBox.C OwnerBox.h 
Log Message:
Fixed problems with isOpen() (not used anyway).


===================================================================
File: OwnerBox.C       	Status: Up-to-date

   Working revision:	1.1001	Mon Feb 10 17:06:32 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/OwnerBox.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: OwnerBox.h       	Status: Up-to-date

   Working revision:	1.1001	Mon Feb 10 17:07:12 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/OwnerBox.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)
	development-0            	(revision: 1.1)


****************************************
Date:	Tuesday February 11, 1997 @ 12:52
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	Compute.C ComputeDPMTA.C ComputeDPMTA.h ComputeMap.C 
	ComputeMap.h ComputeMgr.C ComputeNonbondedPair.h 
	ComputePatch.C ComputePatchPair.C HomePatch.C HomePatch.h 
	NamdState.C NamdState.h NamdTypes.h ParseOptions.C Patch.C 
	Patch.h ProxyMgr.C ReductionMgr.C WorkDistrib.C common.C 
Log Message:
Modified with #ifdef DPMTA to safely eliminate DPMTA codes
fixed non-buffering of migration msgs
Migration works on multiple processors


===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 11 18:51:39 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1002	Tue Feb 11 15:40:17 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1002	Tue Feb 11 18:51:41 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1002	Tue Feb 11 18:51:41 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1002	Tue Feb 11 18:51:42 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1003	Tue Feb 11 18:51:43 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 11 18:51:44 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 11 18:51:44 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1002	Tue Feb 11 18:51:45 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1010	Tue Feb 11 18:51:46 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1002	Tue Feb 11 18:51:47 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 11 18:51:48 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 11 18:51:49 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 11 18:51:49 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 11 18:51:51 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1006	Tue Feb 11 18:51:52 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1002	Tue Feb 11 18:51:54 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1003	Tue Feb 11 18:51:55 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1004	Tue Feb 11 18:51:57 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1002	Tue Feb 11 18:51:58 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 11 18:52:00 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/common.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 11, 1997 @ 13:55
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	Controller.h ReductionMgr.C Sequencer.h 
Log Message:
Tracking the +p4 bug.  Node 3 seems to hang on submit causing Node 0
to hang causing system to hang.


===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 11 16:51:48 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1005	Tue Feb 11 19:55:45 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1002	Tue Feb 11 16:50:07 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 11, 1997 @ 14:25
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory lyon:/private/auto94000130/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ReductionMgr.C 
Log Message:
Added missing #if PANIC > 0


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1006	Tue Feb 11 20:25:47 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 11, 1997 @ 15:12
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Modified Files:
	Makefile 
Log Message:
Ari - attempting to get makefile committed


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1003	Thu Feb  6 17:36:50 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 11, 1997 @ 16:55
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2

Modified Files:
	Makefile 
Log Message:
Added dcd file objects.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1004	Tue Feb 11 22:55:36 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 11, 1997 @ 16:56
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	CollectionMaster.C Node.C Node.h Sequencer.C 
Added Files:
	Output.C Output.h dcdlib.C dcdlib.h 
Log Message:
Added dcd file writing.


===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.1	Tue Feb 11 22:56:15 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Output.h         	Status: Up-to-date

   Working revision:	1.1	Tue Feb 11 22:56:16 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Output.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.1	Tue Feb 11 22:56:18 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dcdlib.h         	Status: Up-to-date

   Working revision:	1.1	Tue Feb 11 22:56:18 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/dcdlib.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 11 20:39:16 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 11 22:56:13 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 11 22:56:14 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1004	Tue Feb 11 21:00:35 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 11, 1997 @ 16:56
Author:	jim

Update of /Projects/l3/cvsroot/namd2/test
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/test

Modified Files:
	brH 
Log Message:
Turned on dcd file writing.


===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 11 20:47:39 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Wednesday February 12, 1997 @ 13:16
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ReductionMgr.C ReductionMgr.h Sequencer.C 
Log Message:
More +p4 debugging.
Added submit(seq,tag) to ReductionMgr in case a node wants to mark
data as submitted without sending data (i.e. "skip this sequence").


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1007	Wed Feb 12 19:16:06 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1001	Wed Feb 12 17:06:23 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1005	Wed Feb 12 18:50:07 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 12, 1997 @ 22:43
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	CollectionMaster.C HomePatch.C Node.C PatchMap.C PatchMap.h 
	PatchMgr.C PatchMgr.h ProxyMgr.C ProxyMgr.h ReductionMgr.C 
	Sequencer.C WorkDistrib.C 
Log Message:
Fixed initial hanging (bug in PatchMap, but it still shouldn't have
happened) and saved migration messages in the buffer from being
deleted, but migration still dies (even on one node).


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1002	Thu Feb 13 02:59:14 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1011	Thu Feb 13 04:43:09 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1002	Thu Feb 13 04:43:10 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1004	Thu Feb 13 04:43:11 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1002	Thu Feb 13 04:43:12 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1002	Thu Feb 13 04:43:12 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1001	Thu Feb 13 04:43:13 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1004	Thu Feb 13 04:43:14 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1001	Thu Feb 13 04:43:15 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1008	Thu Feb 13 04:43:16 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1006	Thu Feb 13 04:34:29 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1003	Thu Feb 13 04:43:17 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 12, 1997 @ 22:44
Author:	jim

Update of /Projects/l3/cvsroot/namd2/test
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/test

Modified Files:
	brH 
Log Message:
Turned off dcd output.


===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1002	Thu Feb 13 00:43:33 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Thursday February 13, 1997 @ 10:17
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Modified Files:
	Makefile 
Log Message:
Intermediate debuging commit - working to fix deep bug in migration"?



===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1005	Wed Feb 12 20:30:46 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 13, 1997 @ 10:17
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	AtomMap.C AtomMap.h CollectionMaster.C Compute.C ComputeMap.C 
	Controller.h HomePatch.C Namd.h NamdTypes.h Node.C Node.ci 
	Node.h ProxyMgr.C ProxyPatch.C ReductionMgr.C Sequencer.C 
	Sequencer.h common.C 
Log Message:
Intermediate debuging commit - working to fix deep bug in migration?


===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1003	Thu Feb 13 16:17:09 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/AtomMap.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: AtomMap.h        	Status: Up-to-date

   Working revision:	1.1002	Thu Feb 13 16:17:10 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/AtomMap.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1003	Thu Feb 13 15:34:47 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1002	Thu Feb 13 16:17:11 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1003	Thu Feb 13 16:17:12 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1002	Tue Feb 11 23:07:45 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1012	Thu Feb 13 16:17:13 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.1001	Thu Feb 13 16:17:14 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Namd.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1002	Thu Feb 13 16:17:15 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1003	Thu Feb 13 16:17:16 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 11 20:10:52 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1002	Thu Feb 13 16:17:17 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1005	Thu Feb 13 16:17:18 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1005	Thu Feb 13 16:17:19 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1009	Thu Feb 13 16:17:20 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1007	Thu Feb 13 16:17:20 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1003	Wed Feb 12 00:33:01 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1002	Thu Feb 13 16:17:22 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/common.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 13, 1997 @ 10:17
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Modified Files:
	alanin brH 
Log Message:
Intermediate debuging commit - working to fix deep bug in migration?


===================================================================
File: alanin           	Status: Up-to-date

   Working revision:	1.1001	Wed Feb 12 01:12:33 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/test/alanin,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1003	Thu Feb 13 15:34:56 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Thursday February 13, 1997 @ 11:05
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory prospero:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2

Modified Files:
	Makefile 
Log Message:
Small change to avoid PVMLIBDIR conflict with shell when commented out.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1006	Thu Feb 13 16:35:03 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 13, 1997 @ 11:06
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory prospero:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	AtomMap.C HomePatch.C 
Log Message:
Turned off debugging.


===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1004	Thu Feb 13 17:06:19 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/AtomMap.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1013	Thu Feb 13 17:06:22 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 13, 1997 @ 11:17
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ReductionMgr.C 
Log Message:
Removed compilation messages about unused variables.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1010	Thu Feb 13 17:16:58 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 13, 1997 @ 16:27
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	WorkDistrib.C common.C common.h 
Log Message:
Added inital velocity code from NAMD 1.
Reading velocity pdb file appears to work.
Reading binary velociy file should work but is untested.
Random velocites appears to work but differs from NAMD 1.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1004	Thu Feb 13 22:27:04 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1003	Thu Feb 13 22:27:05 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/common.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1001	Thu Feb 13 22:27:05 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 13, 1997 @ 17:17
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedPair.C 
	ComputePatchPair.C HomePatch.C Namd.h ProxyMgr.C ProxyPatch.C 
Log Message:
Fixed a final bug in AtomMigration - numatoms in ComputePatchPair.C not
set correctly in atomUpdate()


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1002	Thu Feb 13 23:17:15 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1001	Thu Feb 13 23:17:16 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1003	Thu Feb 13 23:17:17 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1014	Thu Feb 13 23:17:17 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.1002	Thu Feb 13 23:17:18 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Namd.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1006	Thu Feb 13 23:17:19 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1006	Thu Feb 13 23:17:20 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 13, 1997 @ 17:17
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src/Templates

Modified Files:
	ResizeArray.C 
Log Message:
Small ?mistake in delete usage


===================================================================
File: ResizeArray.C    	Status: Up-to-date

   Working revision:	1.1001	Thu Feb 13 23:17:45 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 13, 1997 @ 17:18
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Modified Files:
	alanin brH 
Log Message:
Setup for testing runs


===================================================================
File: alanin           	Status: Up-to-date

   Working revision:	1.1002	Thu Feb 13 22:10:09 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/test/alanin,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1004	Thu Feb 13 22:57:08 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Thursday February 13, 1997 @ 23:53
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	CollectionMaster.C Sequencer.C 
Log Message:
Position and velocity output should now work.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1004	Fri Feb 14 05:27:41 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1008	Fri Feb 14 05:53:04 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 14, 1997 @ 13:07
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	AtomMap.C ComputeDPMTA.C ComputeFullDirect.C 
	ComputeHomeTuples.C ComputeMap.C ComputeMgr.h LJTable.C 
	WorkDistrib.h 
Log Message:
Added new/delete comments.
Played with DPMTA.


===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1005	Fri Feb 14 19:07:27 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/AtomMap.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1003	Fri Feb 14 18:15:26 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1002	Fri Feb 14 18:41:30 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1003	Fri Feb 14 18:44:58 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1004	Fri Feb 14 19:07:30 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1002	Fri Feb 14 19:07:31 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 14 19:07:31 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/LJTable.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 14 19:07:32 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 14, 1997 @ 13:18
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeMap.C ComputeMgr.C 
Log Message:
More new/delete commenting.


===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1005	Fri Feb 14 19:18:37 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1004	Fri Feb 14 19:18:38 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 14, 1997 @ 14:25
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto91000139/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	WorkDistrib.C WorkDistrib.h 
Log Message:
Patches are now sized according to config file.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1005	Fri Feb 14 20:24:57 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1002	Fri Feb 14 20:24:58 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 17, 1997 @ 14:36
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2

Log Message:
Directory /Projects/l3/cvsroot/namd2/dpmta2 added to the repository


[input file was '-']

****************************************
Date:	Monday February 17, 1997 @ 14:36
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Log Message:
Directory /Projects/l3/cvsroot/namd2/pvm3 added to the repository


[input file was '-']

****************************************
Date:	Monday February 17, 1997 @ 14:37
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Added Files:
	Makefile benchrun.txt conv-host list.dvi list.log nodes 
	nodes.atm pvm3.h pvmc.h pvmc_buf.c pvmc_comm.c pvmc_conv.c 
	pvmc_main.c pvmc_pack.c pvmctest.c 
Log Message:
New pvm3 stuff for Converse


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 17:55:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: benchrun.txt     	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 17:47:38 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/benchrun.txt,v

   Existing Tags:
	No Tags Exist

===================================================================
File: conv-host        	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:36:57 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/conv-host,v

   Existing Tags:
	No Tags Exist

===================================================================
File: list.dvi         	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 17:47:38 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/list.dvi,v

   Existing Tags:
	No Tags Exist

===================================================================
File: list.log         	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 17:47:39 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/list.log,v

   Existing Tags:
	No Tags Exist

===================================================================
File: nodes            	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 17:55:54 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/nodes,v

   Existing Tags:
	No Tags Exist

===================================================================
File: nodes.atm        	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 17:47:39 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/nodes.atm,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pvm3.h           	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 17:47:39 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/pvm3.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pvmc.h           	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 17:47:39 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/pvmc.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pvmc_buf.c       	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:13:26 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/pvmc_buf.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pvmc_comm.c      	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 17:47:39 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/pvmc_comm.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pvmc_conv.c      	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 17:47:39 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/pvmc_conv.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pvmc_main.c      	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 17:47:39 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/pvmc_main.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pvmc_pack.c      	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 17:47:39 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/pvmc_pack.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pvmctest.c       	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 17:47:40 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/pvmctest.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday February 17, 1997 @ 14:37
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/include
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/include

Log Message:
Directory /Projects/l3/cvsroot/namd2/dpmta2/include added to the repository


[input file was '-']

****************************************
Date:	Monday February 17, 1997 @ 14:37
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/mpole
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/mpole

Log Message:
Directory /Projects/l3/cvsroot/namd2/dpmta2/mpole added to the repository


[input file was '-']

****************************************
Date:	Monday February 17, 1997 @ 14:37
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/src

Log Message:
Directory /Projects/l3/cvsroot/namd2/dpmta2/src added to the repository


[input file was '-']

****************************************
Date:	Monday February 17, 1997 @ 14:39
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2

Added Files:
	Makefile README 
Log Message:
New dpmta2 for Converse support.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: README           	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 17:40:13 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/README,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday February 17, 1997 @ 14:39
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/include
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/include

Added Files:
	dpmta.h dpmta_cell.h dpmta_pvm.h dpmta_slave.h dpmta_slvmkil.h 
	dpmta_timer.h dpmta_version.h fpvm3.h pvm3.h pvmsdpro.h 
	pvmtev.h 
Log Message:
New dpmta2 for Converse support.


===================================================================
File: dpmta.h          	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:25 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/include/dpmta.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_cell.h     	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:26 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/include/dpmta_cell.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_pvm.h      	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:26 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/include/dpmta_pvm.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slave.h    	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:27 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/include/dpmta_slave.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkil.h  	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:28 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/include/dpmta_slvmkil.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_timer.h    	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:29 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/include/dpmta_timer.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_version.h  	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:29 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/include/dpmta_version.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fpvm3.h          	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 16:44:51 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/include/fpvm3.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pvm3.h           	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:31 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/include/pvm3.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pvmsdpro.h       	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:31 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/include/pvmsdpro.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pvmtev.h         	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:32 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/include/pvmtev.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday February 17, 1997 @ 14:39
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/mpole
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/mpole

Added Files:
	Makefile Makefile~ mpe.h mpe_fft.c mpe_fftC.h mpe_legendre.h 
	mpe_misc.c mpe_mpoleC.c mpe_mpoleLJ.c mpe_testC.c mpe_testLJ.c 
Log Message:
New dpmta2 for Converse support.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:37 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile~        	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:38 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Makefile~,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe.h            	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:38 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/mpole/mpe.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_fft.c        	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:39 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/mpole/mpe_fft.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_fftC.h       	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 16:42:17 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/mpole/mpe_fftC.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_legendre.h   	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:40 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/mpole/mpe_legendre.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_misc.c       	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:41 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/mpole/mpe_misc.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_mpoleC.c     	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:42 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/mpole/mpe_mpoleC.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_mpoleLJ.c    	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:43 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/mpole/mpe_mpoleLJ.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_testC.c      	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:44 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/mpole/mpe_testC.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_testLJ.c     	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:44 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/mpole/mpe_testLJ.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday February 17, 1997 @ 14:40
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/src

Added Files:
	Makefile Makefile.HPLIB Makefile.cray Makefile~ README dpmta.h 
	dpmta_cell.h dpmta_direct.c dpmta_error.c dpmta_mastiface.c 
	dpmta_mastinit.c dpmta_mastiter.c dpmta_pvm.h dpmta_slave.c 
	dpmta_slave.h dpmta_slvclean.c dpmta_slvcomm.c 
	dpmta_slvcompute.c dpmta_slvmacro.c dpmta_slvmcalc.c 
	dpmta_slvmisc.c dpmta_slvmkcell.c dpmta_slvmkhl.c 
	dpmta_slvmkiil.c dpmta_slvmkil.c dpmta_slvmkil.h 
	dpmta_slvpcalc.c dpmta_slvscale.c dpmta_slvstart.c 
	dpmta_t3dlib.c dpmta_test.c dpmta_test2.c dpmta_test2b.c 
	dpmta_test3.c dpmta_test4.c dpmta_test5.c dpmta_testdump.c 
	dpmta_timer.h dpmta_version.h 
Log Message:
New dpmta2 for Converse support.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:50 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile.HPLIB   	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:50 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/Makefile.HPLIB,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile.cray    	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:51 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/Makefile.cray,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile~        	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:52 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/Makefile~,v

   Existing Tags:
	No Tags Exist

===================================================================
File: README           	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:52 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/README,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta.h          	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:53 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_cell.h     	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:54 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_cell.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_direct.c   	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:55 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_direct.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_error.c    	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:55 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_error.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastiface.c	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:56 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_mastiface.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastinit.c 	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:57 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_mastinit.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastiter.c 	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:58 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_mastiter.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_pvm.h      	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:58 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_pvm.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slave.c    	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:39:59 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slave.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slave.h    	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:00 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slave.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvclean.c 	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:00 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvclean.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvcomm.c  	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:01 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvcomm.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvcompute.c	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:02 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvcompute.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmacro.c 	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:03 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmacro.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmcalc.c 	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:04 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmcalc.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmisc.c  	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:04 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmisc.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkcell.c	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:05 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmkcell.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkhl.c  	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:06 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmkhl.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkiil.c 	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:07 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmkiil.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkil.c  	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:08 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmkil.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkil.h  	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:08 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmkil.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvpcalc.c 	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:09 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvpcalc.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvscale.c 	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:10 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvscale.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvstart.c 	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:10 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvstart.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_t3dlib.c   	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:11 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_t3dlib.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test.c     	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:12 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_test.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test2.c    	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:13 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_test2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test2b.c   	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:13 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_test2b.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test3.c    	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:14 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_test3.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test4.c    	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:15 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_test4.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test5.c    	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:15 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_test5.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_testdump.c 	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:16 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_testdump.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_timer.h    	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:17 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_timer.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_version.h  	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 20:40:18 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_version.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday February 17, 1997 @ 14:41
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Modified Files:
	Makefile 
Log Message:
Modified for new DPMTA...


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1007	Mon Feb 17 19:24:51 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 17, 1997 @ 14:43
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C 
Log Message:
Modified for DPMTA with Converse.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1004	Mon Feb 17 20:17:51 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday February 17, 1997 @ 14:49
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta

Removed Files:
	Makefile Makefile.cray README dpmta.h dpmta_cell.h 
	dpmta_direct.c dpmta_error.c dpmta_mastiface.c 
	dpmta_mastinit.c dpmta_mastiter.c dpmta_pvm.h dpmta_slave.c 
	dpmta_slave.h dpmta_slvclean.c dpmta_slvcomm.c 
	dpmta_slvcompute.c dpmta_slvmacro.c dpmta_slvmcalc.c 
	dpmta_slvmisc.c dpmta_slvmkcell.c dpmta_slvmkhl.c 
	dpmta_slvmkiil.c dpmta_slvmkil.c dpmta_slvmkil.h 
	dpmta_slvpcalc.c dpmta_slvscale.c dpmta_slvstart.c 
	dpmta_t3dlib.c dpmta_test.c dpmta_test2.c dpmta_test2b.c 
	dpmta_test3.c dpmta_test4.c dpmta_testdump.c dpmta_timer.h 
	dpmta_version.h 
Log Message:
No longer necessary.


===================================================================
File: no file Makefile		Status: Needs Checkout

   Working revision:	No entry for Makefile
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/Makefile,v

===================================================================
File: no file Makefile.cray		Status: Needs Checkout

   Working revision:	No entry for Makefile.cray
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/Makefile.cray,v

===================================================================
File: no file README		Status: Needs Checkout

   Working revision:	No entry for README
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/README,v

===================================================================
File: no file dpmta.h		Status: Needs Checkout

   Working revision:	No entry for dpmta.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta.h,v

===================================================================
File: no file dpmta_cell.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_cell.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_cell.h,v

===================================================================
File: no file dpmta_direct.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_direct.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_direct.c,v

===================================================================
File: no file dpmta_error.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_error.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_error.c,v

===================================================================
File: no file dpmta_mastiface.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_mastiface.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_mastiface.c,v

===================================================================
File: no file dpmta_mastinit.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_mastinit.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_mastinit.c,v

===================================================================
File: no file dpmta_mastiter.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_mastiter.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_mastiter.c,v

===================================================================
File: no file dpmta_pvm.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_pvm.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_pvm.h,v

===================================================================
File: no file dpmta_slave.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slave.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slave.c,v

===================================================================
File: no file dpmta_slave.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_slave.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slave.h,v

===================================================================
File: no file dpmta_slvclean.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvclean.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slvclean.c,v

===================================================================
File: no file dpmta_slvcomm.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvcomm.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slvcomm.c,v

===================================================================
File: no file dpmta_slvcompute.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvcompute.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slvcompute.c,v

===================================================================
File: no file dpmta_slvmacro.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmacro.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slvmacro.c,v

===================================================================
File: no file dpmta_slvmcalc.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmcalc.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slvmcalc.c,v

===================================================================
File: no file dpmta_slvmisc.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmisc.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slvmisc.c,v

===================================================================
File: no file dpmta_slvmkcell.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmkcell.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slvmkcell.c,v

===================================================================
File: no file dpmta_slvmkhl.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmkhl.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slvmkhl.c,v

===================================================================
File: no file dpmta_slvmkiil.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmkiil.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slvmkiil.c,v

===================================================================
File: no file dpmta_slvmkil.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmkil.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slvmkil.c,v

===================================================================
File: no file dpmta_slvmkil.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmkil.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slvmkil.h,v

===================================================================
File: no file dpmta_slvpcalc.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvpcalc.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slvpcalc.c,v

===================================================================
File: no file dpmta_slvscale.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvscale.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slvscale.c,v

===================================================================
File: no file dpmta_slvstart.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvstart.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_slvstart.c,v

===================================================================
File: no file dpmta_t3dlib.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_t3dlib.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_t3dlib.c,v

===================================================================
File: no file dpmta_test.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_test.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_test.c,v

===================================================================
File: no file dpmta_test2.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_test2.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_test2.c,v

===================================================================
File: no file dpmta_test2b.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_test2b.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_test2b.c,v

===================================================================
File: no file dpmta_test3.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_test3.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_test3.c,v

===================================================================
File: no file dpmta_test4.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_test4.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_test4.c,v

===================================================================
File: no file dpmta_testdump.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_testdump.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_testdump.c,v

===================================================================
File: no file dpmta_timer.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_timer.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_timer.h,v

===================================================================
File: no file dpmta_version.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_version.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta/Attic/dpmta_version.h,v


****************************************
Date:	Monday February 17, 1997 @ 17:46
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Modified Files:
	Makefile 
Log Message:
Commented out dpmta


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1008	Mon Feb 17 22:30:30 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 17, 1997 @ 17:47
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeHomeTuples.h HomePatch.C HomePatch.h 
	PatchMgr.C PatchMgr.h ProxyMgr.C 
Added Files:
	MigrateAtomsMsg.C MigrateAtomsMsg.h 
Log Message:
Added files for cleaning up atom migration code


===================================================================
File: MigrateAtomsMsg.C	Status: Up-to-date

   Working revision:	1.1	Mon Feb 17 23:47:01 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/MigrateAtomsMsg.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: MigrateAtomsMsg.h	Status: Up-to-date

   Working revision:	1.1	Fri Feb 14 23:05:10 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/MigrateAtomsMsg.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1005	Mon Feb 17 22:19:59 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1001	Mon Feb 17 23:46:58 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1015	Mon Feb 17 23:46:59 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1003	Mon Feb 17 23:47:00 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1003	Mon Feb 17 23:47:03 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1002	Mon Feb 17 23:47:04 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1007	Mon Feb 17 23:47:05 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 17, 1997 @ 17:47
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src/Templates

Modified Files:
	ResizeArray.C ResizeArray.h SortableResizeArray.C 
	SortableResizeArray.h 
Log Message:
Improving performance via inlines 


===================================================================
File: ResizeArray.C    	Status: Up-to-date

   Working revision:	1.1002	Mon Feb 17 23:47:22 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.1001	Mon Feb 17 23:47:23 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortableResizeArray.C	Status: Up-to-date

   Working revision:	1.1001	Mon Feb 17 23:29:46 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.C,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortableResizeArray.h	Status: Up-to-date

   Working revision:	1.1001	Mon Feb 17 23:28:53 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 17, 1997 @ 17:48
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Modified Files:
	brH 
Log Message:
Minor changes for debuging


===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1005	Mon Feb 17 21:56:03 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Tuesday February 18, 1997 @ 9:40
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2

Modified Files:
	Makefile 
Log Message:
Copies the libraries to the correct place.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.2	Tue Feb 18 15:40:31 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday February 18, 1997 @ 10:13
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Modified Files:
	Makefile 
Log Message:
Turned DPMTA and PVM back on...


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1009	Tue Feb 18 16:08:23 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 19, 1997 @ 10:54
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Modified Files:
	conv-host pvm3.h pvmc_buf.c pvmc_comm.c pvmc_conv.c 
Log Message:
PVM changes to make it almost work.


===================================================================
File: conv-host        	Status: Up-to-date

   Working revision:	1.2	Wed Feb 19 16:54:26 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/pvm3/conv-host,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvm3.h           	Status: Up-to-date

   Working revision:	1.2	Wed Feb 19 15:56:57 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/pvm3/pvm3.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_buf.c       	Status: Up-to-date

   Working revision:	1.2	Wed Feb 19 16:34:31 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/pvm3/pvmc_buf.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_comm.c      	Status: Up-to-date

   Working revision:	1.2	Wed Feb 19 16:51:12 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/pvm3/pvmc_comm.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_conv.c      	Status: Up-to-date

   Working revision:	1.2	Wed Feb 19 16:36:59 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/pvm3/pvmc_conv.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday February 19, 1997 @ 10:55
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Modified Files:
	Makefile 
Log Message:
Uncommented the "cd ... make" for PVM and DPMTA.  Ugh.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1010	Wed Feb 19 16:01:47 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 19, 1997 @ 11:45
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Modified Files:
	conv-host pvm3.h pvmc_comm.c 
Log Message:
Got it to start!


===================================================================
File: conv-host        	Status: Up-to-date

   Working revision:	1.3	Wed Feb 19 17:45:56 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/pvm3/conv-host,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvm3.h           	Status: Up-to-date

   Working revision:	1.3	Wed Feb 19 17:38:10 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/pvm3/pvm3.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_comm.c      	Status: Up-to-date

   Working revision:	1.3	Wed Feb 19 17:33:37 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/pvm3/pvmc_comm.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday February 19, 1997 @ 11:46
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Removed Files:
	conv-host 
Log Message:
Unnecessary.


===================================================================
File: no file conv-host		Status: Needs Checkout

   Working revision:	No entry for conv-host
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/pvm3/Attic/conv-host,v


****************************************
Date:	Wednesday February 19, 1997 @ 11:47
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Removed Files:
	benchrun.txt list.dvi list.log 
Log Message:
Unnecessary.


===================================================================
File: no file benchrun.txt		Status: Needs Checkout

   Working revision:	No entry for benchrun.txt
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/pvm3/Attic/benchrun.txt,v

===================================================================
File: no file list.dvi		Status: Needs Checkout

   Working revision:	No entry for list.dvi
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/pvm3/Attic/list.dvi,v

===================================================================
File: no file list.log		Status: Needs Checkout

   Working revision:	No entry for list.log
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/pvm3/Attic/list.log,v


****************************************
Date:	Wednesday February 19, 1997 @ 12:30
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Modified Files:
	pvmc_comm.c 
Log Message:
Checking in.


===================================================================
File: pvmc_comm.c      	Status: Up-to-date

   Working revision:	1.4	Wed Feb 19 17:53:52 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/pvm3/pvmc_comm.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday February 19, 1997 @ 17:11
Author:	brunner

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2

Modified Files:
	Makefile 
Log Message:
Added dependencies for dpmta2 and pvmc libraries



===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1011	Wed Feb 19 21:10:34 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 19, 1997 @ 17:13
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/test
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/test

Added Files:
	pro1-wat.conf 
Log Message:
Removed DCD output option, and added a new test file




===================================================================
File: pro1-wat.conf    	Status: Up-to-date

   Working revision:	1.1	Wed Feb 19 20:18:11 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/test/pro1-wat.conf,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 19, 1997 @ 17:18
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/pvm3

Modified Files:
	Makefile pvmc_buf.c pvmc_comm.c pvmc_conv.c 
Log Message:
Fixed several bugs.  


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.2	Wed Feb 19 20:27:20 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/pvm3/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_buf.c       	Status: Up-to-date

   Working revision:	1.3	Wed Feb 19 22:47:11 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/pvm3/pvmc_buf.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_comm.c      	Status: Up-to-date

   Working revision:	1.5	Wed Feb 19 22:24:10 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/pvm3/pvmc_comm.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_conv.c      	Status: Up-to-date

   Working revision:	1.3	Wed Feb 19 21:06:22 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/pvm3/pvmc_conv.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday February 19, 1997 @ 17:19
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	CommunicateConverse.C ComputeDPMTA.C 
Log Message:
Added pvmc init calls to CommunicateConverse.C



===================================================================
File: CommunicateConverse.C	Status: Up-to-date

   Working revision:	1.1001	Wed Feb 19 23:19:35 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/CommunicateConverse.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1006	Wed Feb 19 20:44:34 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Thursday February 20, 1997 @ 11:18
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Modified Files:
	Makefile 
Log Message:
Someone else edited my makefile!  Had to fix it again!


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1012	Thu Feb 20 17:18:33 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 20, 1997 @ 11:19
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Modified Files:
	pvmc_pack.c 
Log Message:
Lotta debugging added.


===================================================================
File: pvmc_pack.c      	Status: Up-to-date

   Working revision:	1.2	Thu Feb 20 17:04:11 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/pvm3/pvmc_pack.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday February 20, 1997 @ 11:54
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Modified Files:
	Makefile 
Log Message:
Namd2 depends on libs (to make Robbert happy)


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1013	Thu Feb 20 17:53:45 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 20, 1997 @ 17:11
Author:	brunner

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2

Modified Files:
	Makefile 
Log Message:
Added accesslist target for adding new people


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1014	Thu Feb 20 18:06:17 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 20, 1997 @ 17:12
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/dpmta2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/dpmta2/src

Modified Files:
	dpmta_slvcomm.c dpmta_t3dlib.c 
Log Message:
Changes for running t3dlib on a single processor.  It didn't
initialize dpmta_MasterTid.


===================================================================
File: dpmta_slvcomm.c  	Status: Up-to-date

   Working revision:	1.2	Thu Feb 20 23:12:04 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvcomm.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_t3dlib.c   	Status: Up-to-date

   Working revision:	1.2	Thu Feb 20 23:12:05 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_t3dlib.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday February 20, 1997 @ 17:12
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/pvm3

Modified Files:
	pvmc_buf.c pvmc_conv.c pvmc_pack.c 
Log Message:
More bug fixes.  Its getting pretty close now


===================================================================
File: pvmc_buf.c       	Status: Up-to-date

   Working revision:	1.4	Thu Feb 20 20:57:03 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/pvm3/pvmc_buf.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_conv.c      	Status: Up-to-date

   Working revision:	1.4	Thu Feb 20 22:37:12 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/pvm3/pvmc_conv.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_pack.c      	Status: Up-to-date

   Working revision:	1.3	Thu Feb 20 22:52:21 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/pvm3/pvmc_pack.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday February 20, 1997 @ 17:13
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	ComputeDPMTA.C 
Log Message:
Changed call for numAtoms.  The one in SimParameters is never set, the
one in Molecule works better.



===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1007	Thu Feb 20 22:07:52 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Thursday February 20, 1997 @ 17:14
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/test
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/test

Modified Files:
	alanin brH 
Log Message:



===================================================================
File: alanin           	Status: Up-to-date

   Working revision:	1.1003	Thu Feb 20 18:17:23 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/test/alanin,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1006	Wed Feb 19 20:24:43 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Friday February 21, 1997 @ 11:38
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/src

Modified Files:
	Makefile Makefile.HPLIB dpmta.h dpmta_t3dlib.c 
Log Message:
Got DPMTA to work!


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.2	Fri Feb 21 17:38:09 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: Makefile.HPLIB   	Status: Up-to-date

   Working revision:	1.2	Fri Feb 21 17:38:10 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Makefile.HPLIB,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta.h          	Status: Up-to-date

   Working revision:	1.2	Fri Feb 21 17:38:11 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_t3dlib.c   	Status: Up-to-date

   Working revision:	1.3	Fri Feb 21 17:38:12 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_t3dlib.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Friday February 21, 1997 @ 11:38
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Modified Files:
	Makefile pvmc_buf.c pvmc_comm.c 
Log Message:
Got DPMTA to work!


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.3	Fri Feb 21 16:59:15 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/pvm3/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_buf.c       	Status: Up-to-date

   Working revision:	1.5	Fri Feb 21 17:08:05 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/pvm3/pvmc_buf.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_comm.c      	Status: Up-to-date

   Working revision:	1.6	Thu Feb 20 15:52:11 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/pvm3/pvmc_comm.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Friday February 21, 1997 @ 11:38
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeAngles.h ComputeAngles.inl ComputeDPMTA.C Controller.C 
Log Message:
Got DPMTA to work!


===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 21 17:38:29 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.inl	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 21 17:38:31 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeAngles.inl,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1008	Fri Feb 21 17:34:01 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1002	Fri Feb 21 15:22:26 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 21, 1997 @ 11:38
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/test
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/test

Modified Files:
	brH nodes 
Log Message:
Got DPMTA to work!


===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1007	Fri Feb 21 16:08:31 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: nodes            	Status: Up-to-date

   Working revision:	1.1001	Thu Feb 13 19:45:25 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/test/nodes,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Friday February 21, 1997 @ 13:08
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2

Modified Files:
	Makefile 
Log Message:
Fixed problems compiling Charm version of pvm.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1015	Fri Feb 21 17:53:17 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 21, 1997 @ 13:09
Author:	jim

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/pvm3

Modified Files:
	Makefile 
Log Message:
Fixed problems compiling Charm version of pvm.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.4	Fri Feb 21 17:53:56 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/pvm3/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Friday February 21, 1997 @ 14:45
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeAngles.h ComputeDPMTA.h ComputeNonbondedBase.h 
	ComputeNonbondedHack.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h 
Log Message:
Eliminated multiple function for switching and modified 1-4 interactions.
Now assumes a switching function, but parameters are such that nothing
happens, same for modified 1-4.  Slight penalty for rare simulations
in which these features are not used, but otherwise no loss and
simplifies code.


===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1002	Fri Feb 21 20:45:10 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1003	Fri Feb 21 20:45:11 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1003	Fri Feb 21 20:45:11 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedHack.h	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 21 20:45:12 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedHack.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 21 20:45:13 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 21 20:45:13 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 24, 1997 @ 9:47
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C 
Log Message:
Fixed unfreed memory (fmaResults wasn't being freed).


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1009	Mon Feb 24 15:44:20 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday February 24, 1997 @ 9:54
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Modified Files:
	Makefile 
Log Message:
Added CHARM= to the specific library calls.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1016	Mon Feb 24 15:54:20 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 24, 1997 @ 11:39
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Modified Files:
	Makefile pvmc_buf.c pvmc_comm.c pvmc_conv.c pvmc_pack.c 
Log Message:
Lotta debugging stuff.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.5	Mon Feb 24 16:18:54 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/pvm3/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_buf.c       	Status: Up-to-date

   Working revision:	1.6	Mon Feb 24 17:32:54 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/pvm3/pvmc_buf.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_comm.c      	Status: Up-to-date

   Working revision:	1.7	Mon Feb 24 16:52:40 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/pvm3/pvmc_comm.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_conv.c      	Status: Up-to-date

   Working revision:	1.5	Mon Feb 24 16:12:54 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/pvm3/pvmc_conv.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_pack.c      	Status: Up-to-date

   Working revision:	1.4	Fri Feb 21 20:00:21 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/pvm3/pvmc_pack.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday February 25, 1997 @ 12:23
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2

Modified Files:
	Makefile 
Log Message:
Changed PVM lib location


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.3	Tue Feb 25 18:23:31 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday February 25, 1997 @ 12:23
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/mpole
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/mpole

Modified Files:
	Makefile 
Log Message:
Changed PVM lib location


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.2	Tue Feb 25 18:23:43 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday February 25, 1997 @ 12:24
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/src

Modified Files:
	Makefile.HPLIB dpmta_direct.c dpmta_mastiface.c 
	dpmta_mastinit.c dpmta_mastiter.c dpmta_slave.c 
	dpmta_slvcomm.c dpmta_slvmacro.c dpmta_slvmkcell.c 
	dpmta_slvmkiil.c dpmta_t3dlib.c 
Log Message:
Changed PVM lib location
Use pvmc.h instead of pvm3.h
More debugging.


===================================================================
File: Makefile.HPLIB   	Status: Up-to-date

   Working revision:	1.3	Tue Feb 25 18:24:08 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/Makefile.HPLIB,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_direct.c   	Status: Up-to-date

   Working revision:	1.2	Tue Feb 25 18:24:10 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_direct.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_mastiface.c	Status: Up-to-date

   Working revision:	1.2	Tue Feb 25 18:24:12 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_mastiface.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_mastinit.c 	Status: Up-to-date

   Working revision:	1.2	Tue Feb 25 18:24:15 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_mastinit.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_mastiter.c 	Status: Up-to-date

   Working revision:	1.2	Tue Feb 25 18:24:17 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_mastiter.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slave.c    	Status: Up-to-date

   Working revision:	1.2	Tue Feb 25 18:24:20 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slave.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slvcomm.c  	Status: Up-to-date

   Working revision:	1.3	Tue Feb 25 18:24:24 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvcomm.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slvmacro.c 	Status: Up-to-date

   Working revision:	1.2	Tue Feb 25 18:24:28 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmacro.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slvmkcell.c	Status: Up-to-date

   Working revision:	1.2	Tue Feb 25 18:24:30 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmkcell.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slvmkiil.c 	Status: Up-to-date

   Working revision:	1.2	Tue Feb 25 18:24:34 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmkiil.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_t3dlib.c   	Status: Up-to-date

   Working revision:	1.4	Tue Feb 25 18:24:39 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_t3dlib.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday February 25, 1997 @ 12:24
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Modified Files:
	Makefile pvmc.h pvmc_buf.c pvmc_comm.c pvmc_conv.c pvmc_pack.c 
Log Message:
More debugging.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.6	Tue Feb 25 17:52:22 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/pvm3/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc.h           	Status: Up-to-date

   Working revision:	1.2	Tue Feb 25 15:24:55 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/pvm3/pvmc.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_buf.c       	Status: Up-to-date

   Working revision:	1.7	Tue Feb 25 15:25:41 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/pvm3/pvmc_buf.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_comm.c      	Status: Up-to-date

   Working revision:	1.8	Tue Feb 25 15:26:07 1997
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/pvm3/pvmc_comm.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_conv.c      	Status: Up-to-date

   Working revision:	1.6	Tue Feb 25 15:26:36 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/pvm3/pvmc_conv.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_pack.c      	Status: Up-to-date

   Working revision:	1.5	Tue Feb 25 15:25:08 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/pvm3/pvmc_pack.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday February 25, 1997 @ 12:26
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C ProxyMgr.C 
Log Message:
More DPMTA debugging
Disabled ProxyMgr debugging


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1010	Tue Feb 25 17:57:19 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1008	Tue Feb 25 18:26:22 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 26, 1997 @ 10:50
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Modified Files:
	Makefile 
Log Message:
Tried to get dpmta/pvm changes to compile in a general (but hack) way


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1017	Tue Feb 25 20:33:06 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 26, 1997 @ 10:51
Author:	ari

Update of /Projects/l3/cvsroot/namd2/dpmta2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/dpmta2

Modified Files:
	Makefile 
Log Message:
Tried to get dpmta/pvm changes to compile in a general (but hack) way


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.4	Wed Feb 26 16:51:58 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday February 26, 1997 @ 10:52
Author:	ari

Update of /Projects/l3/cvsroot/namd2/dpmta2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/dpmta2/src

Modified Files:
	Makefile.HPLIB 
Log Message:
Tried to get dpmta/pvm changes to compile in a general (but hack) way


===================================================================
File: Makefile.HPLIB   	Status: Up-to-date

   Working revision:	1.4	Wed Feb 26 16:52:05 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/src/Makefile.HPLIB,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday February 26, 1997 @ 10:53
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	HomePatch.C HomePatchList.h MigrateAtomsMsg.C 
	MigrateAtomsMsg.h Node.C Patch.h PatchMgr.C PatchMgr.ci 
	PatchMgr.h ProxyMgr.C ProxyMgr.h ProxyPatch.C Vector.h 
	WorkDistrib.C WorkDistrib.ci WorkDistrib.h main.C main.h 
Log Message:
Cleaning and debuging for memory leaks.
Adding comments.
Removed some dead code due to use of Quiescense detection.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1016	Wed Feb 26 16:53:09 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatchList.h  	Status: Up-to-date

   Working revision:	1.1001	Wed Feb 26 16:53:10 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/HomePatchList.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: MigrateAtomsMsg.C	Status: Up-to-date

   Working revision:	1.2	Wed Feb 26 16:53:11 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/MigrateAtomsMsg.C,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: MigrateAtomsMsg.h	Status: Up-to-date

   Working revision:	1.2	Wed Feb 19 17:44:48 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/MigrateAtomsMsg.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1004	Wed Feb 26 16:53:12 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1003	Wed Feb 26 16:53:13 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1004	Wed Feb 26 16:53:14 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.ci      	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 21 17:36:57 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/PatchMgr.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1003	Wed Feb 26 16:53:15 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1009	Wed Feb 26 16:53:16 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1002	Wed Feb 26 16:53:17 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1007	Wed Feb 26 16:53:17 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.1001	Wed Feb 26 16:53:18 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Vector.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1006	Wed Feb 26 16:53:19 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 21 18:56:49 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1003	Wed Feb 26 16:53:20 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1001	Wed Feb 26 16:53:21 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/main.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.h           	Status: Up-to-date

   Working revision:	1.1001	Wed Feb 26 16:53:22 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/main.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 26, 1997 @ 10:53
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src/Templates

Modified Files:
	ResizeArray.C ResizeArray.h SortableResizeArray.h 
	SortedArray.h UniqueSortedArray.h 
Log Message:
Cleaning and debuging for memory leaks.


===================================================================
File: ResizeArray.C    	Status: Up-to-date

   Working revision:	1.1003	Wed Feb 26 16:53:40 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.1002	Wed Feb 26 16:53:40 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortableResizeArray.h	Status: Up-to-date

   Working revision:	1.1002	Tue Feb 18 17:50:36 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortedArray.h    	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 18 06:07:10 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/SortedArray.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: UniqueSortedArray.h	Status: Up-to-date

   Working revision:	1.1001	Tue Feb 18 08:04:05 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSortedArray.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 26, 1997 @ 10:53
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Modified Files:
	alanin brH 
Log Message:
These are just for testing


===================================================================
File: alanin           	Status: Up-to-date

   Working revision:	1.1004	Fri Feb 21 23:39:05 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/test/alanin,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1008	Tue Feb 25 20:47:21 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Wednesday February 26, 1997 @ 12:30
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2

Modified Files:
	Makefile 
Log Message:
Fighting others with the makefile.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.5	Wed Feb 26 18:30:53 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/dpmta2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday February 26, 1997 @ 12:31
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/mpole
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/mpole

Modified Files:
	Makefile 
Log Message:
Fighting others with the makefile.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.3	Wed Feb 26 18:31:00 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday February 26, 1997 @ 12:31
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/src

Modified Files:
	Makefile.HPLIB dpmta_mastiter.c 
Log Message:
Fighting others with the makefile.
More DPMTA debugging


===================================================================
File: Makefile.HPLIB   	Status: Up-to-date

   Working revision:	1.5	Wed Feb 26 18:31:16 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/dpmta2/src/Makefile.HPLIB,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_mastiter.c 	Status: Up-to-date

   Working revision:	1.3	Wed Feb 26 18:31:18 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_mastiter.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday February 26, 1997 @ 12:31
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Modified Files:
	Makefile pvmc_buf.c 
Log Message:
More debugging


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.7	Wed Feb 26 16:49:00 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/pvm3/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_buf.c       	Status: Up-to-date

   Working revision:	1.8	Tue Feb 25 19:51:16 1997
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/pvm3/pvmc_buf.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday February 26, 1997 @ 12:31
Author:	jim

Update of /Projects/l3/cvsroot/namd2/test
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/test

Added Files:
	watercube watercube.xplor 
Log Message:
Test systems for periodic boundary conditions on 24000 water atoms.


===================================================================
File: watercube        	Status: Up-to-date

   Working revision:	1.1	Wed Feb 26 18:27:47 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/test/watercube,v

   Existing Tags:
	No Tags Exist

===================================================================
File: watercube.xplor  	Status: Up-to-date

   Working revision:	1.1	Wed Feb 26 18:27:44 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/test/watercube.xplor,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 26, 1997 @ 12:38
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Output.C 
Log Message:
Eliminated +1 from output timestep checks, now makes sense.
This should match changes being made in NAMD 1.X.


===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.2	Wed Feb 26 18:38:24 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday February 26, 1997 @ 12:46
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2

Modified Files:
	Makefile 
Log Message:
Added PVM includes to g++ calls during make depends.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1018	Wed Feb 26 18:39:07 1997
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 26, 1997 @ 15:39
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	HomePatch.C HomePatch.h 
Log Message:
Fixed migration with periodic boundary conditions to correctly
re-center migrated atoms on their new home patch.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1017	Wed Feb 26 21:39:27 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1004	Wed Feb 26 21:39:28 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 26, 1997 @ 17:09
Author:	brunner

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2

Modified Files:
	Makefile 
Log Message:
Turned on optimization



===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1019	Wed Feb 26 21:55:28 1997
   Repository revision:	1.1019	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 26, 1997 @ 17:10
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/dpmta2
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/dpmta2

Modified Files:
	Makefile 
Log Message:
Nothing, really



===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.6	Wed Feb 26 23:10:30 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/dpmta2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday February 26, 1997 @ 17:10
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/pvm3

Modified Files:
	Makefile pvmc_pack.c 
Log Message:
Changed some of the memcpy calls for stride != 1



===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.8	Wed Feb 26 21:55:06 1997
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/pvm3/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_pack.c      	Status: Up-to-date

   Working revision:	1.6	Wed Feb 26 21:47:39 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/pvm3/pvmc_pack.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday February 26, 1997 @ 17:11
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	ComputeDPMTA.C 
Log Message:
Changed number of atoms passed to DPMTA, put in charge



===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1011	Wed Feb 26 20:00:50 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Wednesday February 26, 1997 @ 17:11
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/test
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/test

Modified Files:
	brH 
Log Message:
Turned off DCD, made simulation 20 steps



===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1009	Wed Feb 26 21:53:08 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Wednesday February 26, 1997 @ 17:18
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	NamdState.C WorkDistrib.C 
Log Message:
Now should read binary coordinate files - untested.


===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1002	Wed Feb 26 23:18:44 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1007	Wed Feb 26 23:18:45 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 27, 1997 @ 14:01
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeDPMTA.h 
Log Message:
DPMTA no longer runs every timestep.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1012	Thu Feb 27 20:00:21 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1004	Thu Feb 27 20:01:43 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Thursday February 27, 1997 @ 14:02
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2

Modified Files:
	Makefile 
Log Message:
Turned on debugging.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.7	Thu Feb 27 20:02:12 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/dpmta2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday February 27, 1997 @ 14:02
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/src

Modified Files:
	Makefile.HPLIB dpmta_mastiter.c 
Log Message:
Turned on debugging.


===================================================================
File: Makefile.HPLIB   	Status: Up-to-date

   Working revision:	1.6	Thu Feb 27 20:02:18 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/dpmta2/src/Makefile.HPLIB,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_mastiter.c 	Status: Up-to-date

   Working revision:	1.4	Thu Feb 27 20:02:19 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_mastiter.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday February 27, 1997 @ 22:47
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeFullDirect.C ComputeNonbondedBase.h 
	ComputeNonbondedExcl.C ComputeNonbondedHack.h 
	ComputeNonbondedPair.C ComputeNonbondedSelf.C 
	ComputeNonbondedUtil.C ComputeNonbondedUtil.h ComputePatch.h 
	ComputePatchPair.h HomePatch.C Patch.h ProxyMgr.C ProxyMgr.h 
	ProxyPatch.C Sequencer.C 
Added Files:
	PatchTypes.h 
Log Message:
Full electrostatics now works with fulldirect on one node.


===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.1	Fri Feb 28 04:24:25 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1003	Fri Feb 28 04:06:18 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1004	Fri Feb 28 04:47:02 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1003	Wed Feb 26 23:59:48 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedHack.h	Status: Up-to-date

   Working revision:	1.1002	Fri Feb 28 04:47:03 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedHack.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1002	Fri Feb 28 04:47:04 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 28 04:47:05 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1002	Fri Feb 28 04:47:06 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1002	Fri Feb 28 04:47:06 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 28 04:47:07 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputePatch.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 28 04:47:08 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1018	Fri Feb 28 04:47:08 1997
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1004	Fri Feb 28 04:47:09 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1010	Fri Feb 28 04:47:11 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1003	Fri Feb 28 04:47:11 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1008	Fri Feb 28 04:47:12 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1009	Fri Feb 28 04:47:13 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 28, 1997 @ 0:57
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeDPMTA.h ComputeFullDirect.C 
Log Message:
DPMTA is now working, except for one little thing.
On multiple nodes, the reported energy is wrong, but the
trajectory appears to be dead on.  This is an odd one.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1013	Fri Feb 28 06:42:43 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1005	Fri Feb 28 06:57:46 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1004	Fri Feb 28 06:54:51 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)


****************************************
Date:	Friday February 28, 1997 @ 10:13
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	CommunicateConverse.C ComputeDPMTA.C ComputeMap.C LJTable.C 
	Molecule.C WorkDistrib.C 
Log Message:
Turned off debugging code.


===================================================================
File: CommunicateConverse.C	Status: Up-to-date

   Working revision:	1.1002	Fri Feb 28 16:13:50 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/CommunicateConverse.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1014	Fri Feb 28 15:55:35 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1006	Fri Feb 28 16:13:52 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.1002	Fri Feb 28 16:13:53 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/LJTable.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1002	Fri Feb 28 16:13:54 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1008	Fri Feb 28 16:13:55 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 28, 1997 @ 11:47
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeDPMTA.h 
Log Message:
More debugging code.
Re-added "local_timestep" since "fake_seq" is some weird, nearly random
number.
Move some uninitialized variables to where they become initialized.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1015	Fri Feb 28 17:45:59 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1006	Fri Feb 28 17:47:08 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Friday February 28, 1997 @ 12:28
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C 
Log Message:
Reduced huge memory allocation.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1016	Fri Feb 28 18:26:45 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Friday February 28, 1997 @ 14:39
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeDPMTA.h 
Log Message:
Removed local_timestep.  Jim says multiple timestepping is not implemented
yet.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1017	Fri Feb 28 20:38:35 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1007	Fri Feb 28 20:39:45 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Friday February 28, 1997 @ 17:14
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	PatchMap.C 
Log Message:
Eliminated use of two-away neighbors, method now returns 0.


===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1005	Fri Feb 28 23:14:23 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 4, 1997 @ 9:52
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeDPMTA.h 
Log Message:
Modified get_FMA_cube to allow for a rectanglar region.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1018	Tue Mar  4 15:45:39 1997
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1008	Tue Mar  4 15:52:37 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Tuesday March 4, 1997 @ 16:35
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Modified Files:
	Makefile 
Log Message:
Added new file NamdOneTools.C - 
tested out some compiler flags for speed
Fixed up a few subsidiary builds (passing down flags etc)


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1020	Tue Mar  4 22:24:24 1997
   Repository revision:	1.1020	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 4, 1997 @ 16:37
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	AtomMap.C AtomMap.h CollectionMaster.h CollectionMgr.h 
	Communicate.h CommunicateConverse.h ComputeMap.C ComputeMgr.C 
	ComputeMgr.h Controller.C Namd.C Namd.h NamdState.C 
	NamdState.h NamdTypes.h Node.C Node.h ParseOptions.C 
	Sequencer.C SimParameters.C SimParameters.h main.C 
Added Files:
	NamdOneTools.C 
Log Message:
Clean up of code.  Debug statements removal, dead code removal.
Minor fixes, output fixes.
Commented some code from the top->down.  Mainly reworked Namd, Node, main.


===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.1	Tue Mar  4 22:37:12 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1006	Tue Mar  4 22:37:03 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/AtomMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: AtomMap.h        	Status: Up-to-date

   Working revision:	1.1003	Tue Mar  4 22:37:03 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/AtomMap.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 28 23:03:44 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 28 22:56:21 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Communicate.h    	Status: Up-to-date

   Working revision:	1.1001	Tue Mar  4 22:37:06 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Communicate.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicateConverse.h	Status: Up-to-date

   Working revision:	1.1001	Tue Mar  4 22:37:06 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/CommunicateConverse.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1007	Tue Mar  4 22:37:07 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1005	Tue Mar  4 22:37:08 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1003	Tue Mar  4 22:37:09 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1003	Tue Mar  4 21:33:46 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.1001	Tue Mar  4 22:37:10 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Namd.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.1003	Tue Mar  4 22:37:11 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Namd.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1003	Tue Mar  4 22:37:12 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1002	Tue Mar  4 22:37:13 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1003	Tue Mar  4 22:37:14 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1005	Tue Mar  4 22:37:15 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1003	Tue Mar  4 22:37:15 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1002	Tue Mar  4 22:37:16 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1010	Tue Mar  4 22:37:17 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1001	Tue Mar  4 22:37:18 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1001	Tue Mar  4 22:37:19 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1002	Tue Mar  4 22:37:20 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/main.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 4, 1997 @ 16:38
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src/Templates.new

Modified Files:
	ResizeArray.C ResizeArray.h ResizeArrayIter.h 
	SortableResizeArray.C SortableResizeArray.h SortedArray.C 
	SortedArray.h UniqueSortedArray.C UniqueSortedArray.h 
Added Files:
	ResizeArrayRaw.C ResizeArrayRaw.h 
Log Message:
Reworked ResizeArray - much more rational.  Overall about
same performance as before (sometimes a little better).
Needed tricks to make ResizeArray(Raw) work fast.
Clean up of code.  


===================================================================
File: ResizeArrayRaw.C 	Status: Up-to-date

   Working revision:	1.1	Tue Mar  4 22:38:18 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayRaw.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.1	Tue Mar  4 22:38:19 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayRaw.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ResizeArray.C    	Status: Up-to-date

   Working revision:	1.1004	Tue Mar  4 22:38:16 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.1003	Tue Mar  4 22:38:17 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArrayIter.h	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 28 22:45:31 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayIter.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortableResizeArray.C	Status: Up-to-date

   Working revision:	1.1002	Fri Feb 28 22:42:54 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortableResizeArray.h	Status: Up-to-date

   Working revision:	1.1003	Mon Mar  3 23:28:41 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortedArray.C    	Status: Up-to-date

   Working revision:	1.1001	Sat Mar  1 00:02:28 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/SortedArray.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortedArray.h    	Status: Up-to-date

   Working revision:	1.1002	Mon Mar  3 20:49:49 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Templates/SortedArray.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: UniqueSortedArray.C	Status: Up-to-date

   Working revision:	1.1001	Fri Feb 28 22:40:58 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSortedArray.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: UniqueSortedArray.h	Status: Up-to-date

   Working revision:	1.1002	Fri Feb 28 22:40:58 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSortedArray.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 4, 1997 @ 16:38
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Modified Files:
	brH 
Log Message:
My test brH config file


===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1010	Sat Mar  1 03:17:19 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Tuesday March 4, 1997 @ 17:36
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/pvm3

Modified Files:
	Makefile pvm3.h pvmc.h pvmc_comm.c pvmc_conv.c 
Log Message:
Added some group code, which will only work if the pvm group includes
every taskid.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.9	Tue Mar  4 23:20:54 1997
   Repository revision:	1.9	/Projects/l3/cvsroot/namd2/pvm3/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvm3.h           	Status: Up-to-date

   Working revision:	1.4	Tue Mar  4 23:19:31 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/pvm3/pvm3.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc.h           	Status: Up-to-date

   Working revision:	1.3	Tue Mar  4 23:12:55 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/pvm3/pvmc.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_comm.c      	Status: Up-to-date

   Working revision:	1.9	Tue Mar  4 23:20:40 1997
   Repository revision:	1.9	/Projects/l3/cvsroot/namd2/pvm3/pvmc_comm.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: pvmc_conv.c      	Status: Up-to-date

   Working revision:	1.7	Tue Mar  4 23:21:36 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/pvm3/pvmc_conv.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday March 4, 1997 @ 17:36
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	CommunicateConverse.C 
Log Message:
Changed the pvmc_init_xxx calls to one pvmc_init().


===================================================================
File: CommunicateConverse.C	Status: Up-to-date

   Working revision:	1.1003	Tue Mar  4 23:36:29 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/CommunicateConverse.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 5, 1997 @ 11:20
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Added Files:
	pvmc_groups.c 
Log Message:
Rob forgot to add this file to the distribution. :-)


===================================================================
File: pvmc_groups.c    	Status: Up-to-date

   Working revision:	1.1	Wed Mar  5 17:19:24 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/pvm3/pvmc_groups.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday March 6, 1997 @ 10:07
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Modified Files:
	pvm3.h 
Log Message:
Added new pvm function declarations.


===================================================================
File: pvm3.h           	Status: Up-to-date

   Working revision:	1.5	Thu Mar  6 16:06:42 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/pvm3/pvm3.h,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday March 6, 1997 @ 16:05
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Modified Files:
	Makefile 
Log Message:
Removed Compute.ci


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1021	Thu Mar  6 20:54:46 1997
   Repository revision:	1.1021	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 6, 1997 @ 16:06
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	CommunicateConverse.C Compute.C ComputeHomePatches.C 
	ComputeHomeTuples.C ComputePatchPair.C ComputePatchPair.h 
	HomePatch.C HomePatch.h HomePatchList.h MigrateAtomsMsg.C 
	MigrateAtomsMsg.h Namd.h Node.C Node.ci PatchMgr.C PatchMgr.h 
	WorkDistrib.C 
Removed Files:
	Compute.ci 
Log Message:
Removed Compute.ci
Comments added - more code cleaning


===================================================================
File: CommunicateConverse.C	Status: Up-to-date

   Working revision:	1.1004	Thu Mar  6 22:05:56 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/CommunicateConverse.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1003	Thu Mar  6 22:05:57 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.1001	Thu Mar  6 16:11:07 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1004	Thu Mar  6 20:49:29 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1004	Thu Mar  6 22:06:00 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.1002	Thu Mar  6 22:06:01 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1019	Thu Mar  6 22:06:02 1997
   Repository revision:	1.1019	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1005	Thu Mar  6 22:06:02 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatchList.h  	Status: Up-to-date

   Working revision:	1.1002	Thu Mar  6 22:06:03 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/HomePatchList.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: MigrateAtomsMsg.C	Status: Up-to-date

   Working revision:	1.3	Thu Mar  6 22:06:04 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/MigrateAtomsMsg.C,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: MigrateAtomsMsg.h	Status: Up-to-date

   Working revision:	1.3	Thu Mar  6 20:40:22 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/MigrateAtomsMsg.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.1004	Thu Mar  6 22:06:05 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Namd.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1006	Thu Mar  6 22:06:06 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1002	Thu Mar  6 15:31:19 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1005	Thu Mar  6 22:06:08 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1004	Thu Mar  6 22:06:09 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1009	Thu Mar  6 22:06:10 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Compute.ci		Status: Needs Checkout

   Working revision:	No entry for Compute.ci
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Attic/Compute.ci,v


****************************************
Date:	Thursday March 6, 1997 @ 16:06
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Modified Files:
	alanin 
Log Message:
Nothing major


===================================================================
File: alanin           	Status: Up-to-date

   Working revision:	1.1005	Tue Mar  4 23:34:07 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/test/alanin,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Thursday March 6, 1997 @ 16:18
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	WorkDistrib.C WorkDistrib.h 
Log Message:
Made utility functions private functions of WorkDistrib.



===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1010	Thu Mar  6 22:18:16 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1004	Thu Mar  6 22:18:17 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 7, 1997 @ 10:02
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C 
Log Message:
Added PBC.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1019	Fri Mar  7 15:22:32 1997
   Repository revision:	1.1019	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Friday March 7, 1997 @ 11:02
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C 
Log Message:
Using PBC as defined in DPMTA


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1020	Fri Mar  7 16:59:45 1997
   Repository revision:	1.1020	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Friday March 7, 1997 @ 13:20
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeDPMTA.h 
Log Message:
Modified for PBC


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1021	Fri Mar  7 19:16:39 1997
   Repository revision:	1.1021	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1009	Fri Mar  7 19:20:24 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Saturday March 8, 1997 @ 15:09
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Patches are now centered on system so FMA results should match NAMD 1.X.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1011	Sat Mar  8 21:09:04 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 9, 1997 @ 16:28
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedExcl.C ComputeNonbondedExcl.h 
Log Message:
(Hopefully) sped up exclusion calculation (removed gross inefficiencies).


===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1004	Sun Mar  9 22:17:52 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.1001	Sun Mar  9 22:28:24 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 9, 1997 @ 18:27
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Controller.C Controller.h 
Log Message:
Changed energy output format to match NAMD 1.X, moved to method.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1004	Mon Mar 10 00:21:10 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1003	Sun Mar  9 23:20:11 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 9, 1997 @ 18:49
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Eliminated constant copying in exclusion mode, hopefully saves time.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1005	Mon Mar 10 00:49:46 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 10, 1997 @ 9:05
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C 
Log Message:
Lattice defined.  (It was, but someone overwrote it...)


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1022	Mon Mar 10 15:04:41 1997
   Repository revision:	1.1022	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday March 10, 1997 @ 9:06
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	Lattice.h 
Log Message:
Added method.


===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1001	Fri Mar  7 18:50:42 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 10, 1997 @ 9:42
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeDPMTA.h 
Log Message:
Updating once more.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1023	Mon Mar 10 15:20:13 1997
   Repository revision:	1.1023	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1010	Mon Mar 10 15:42:16 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Monday March 10, 1997 @ 10:11
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C 
Log Message:
More PBC changes


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1024	Mon Mar 10 16:08:26 1997
   Repository revision:	1.1024	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Monday March 10, 1997 @ 10:59
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	CollectionMaster.C CollectionMaster.h 
Log Message:
Got rid of sorting of atomwise data.  Now does a gather/scatter.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1005	Mon Mar 10 16:54:37 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1002	Mon Mar 10 16:26:38 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 10, 1997 @ 11:24
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src/Templates.new

Added Files:
	UniqueSet.h UniqueSetIter.h UniqueSetRaw.C UniqueSetRaw.h 
Log Message:
New container for storing Unique elements - hash table


===================================================================
File: UniqueSet.h      	Status: Up-to-date

   Working revision:	1.1	Mon Mar 10 17:24:03 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSet.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: UniqueSetIter.h  	Status: Up-to-date

   Working revision:	1.1	Mon Mar 10 17:24:04 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetIter.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: UniqueSetRaw.C   	Status: Up-to-date

   Working revision:	1.1	Mon Mar 10 17:24:05 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetRaw.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: UniqueSetRaw.h   	Status: Up-to-date

   Working revision:	1.1	Mon Mar 10 17:24:06 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetRaw.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday March 10, 1997 @ 11:35
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeDPMTA.h 
Log Message:
More PBC


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1025	Mon Mar 10 16:42:51 1997
   Repository revision:	1.1025	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1011	Mon Mar 10 17:35:57 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Monday March 10, 1997 @ 11:39
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Modified Files:
	Makefile 
Log Message:
No change - my opts


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1022	Sat Mar  8 10:33:32 1997
   Repository revision:	1.1022	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 10, 1997 @ 11:40
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	CollectionMaster.ci CollectionMgr.ci ComputeAngles.C 
	ComputeAngles.h ComputeBonds.C ComputeBonds.h ComputeDPMTA.h 
	ComputeDihedrals.C ComputeDihedrals.h ComputeHomeTuples.C 
	ComputeHomeTuples.h ComputeImpropers.C ComputeImpropers.h 
	ComputeNonbondedExcl.C ComputeNonbondedExcl.h 
	ComputeNonbondedPair.C ComputeNonbondedSelf.C HomePatch.C 
	HomePatch.h NamdOneTools.C NamdState.C Node.C Node.ci 
	PatchMgr.ci ProxyMgr.ci ReductionMgr.ci WorkDistrib.C 
	WorkDistrib.ci main.ci 
Log Message:
UniqueSet changes - some more commenting and cleanup


===================================================================
File: CollectionMaster.ci	Status: Up-to-date

   Working revision:	1.1001	Sat Mar  8 04:35:26 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/CollectionMaster.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.ci 	Status: Up-to-date

   Working revision:	1.1001	Sat Mar  8 04:35:41 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/CollectionMgr.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1001	Sat Mar  8 01:55:50 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1003	Mon Mar 10 17:40:00 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1001	Sat Mar  8 02:07:38 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1001	Mon Mar 10 17:40:01 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1012	Mon Mar 10 17:40:02 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1001	Sat Mar  8 02:08:15 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1001	Mon Mar 10 17:40:04 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1005	Mon Mar 10 17:40:05 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1002	Mon Mar 10 17:40:05 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1001	Sat Mar  8 02:09:35 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1001	Mon Mar 10 17:40:07 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1005	Mon Mar 10 15:34:44 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.1002	Mon Mar 10 17:40:09 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1003	Mon Mar 10 17:40:09 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1002	Mon Mar 10 17:40:10 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1020	Mon Mar 10 17:40:11 1997
   Repository revision:	1.1020	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1006	Mon Mar 10 17:40:12 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.2	Mon Mar 10 17:40:13 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1004	Mon Mar 10 17:40:13 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1007	Mon Mar 10 17:40:14 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1003	Sat Mar  8 04:36:28 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.ci      	Status: Up-to-date

   Working revision:	1.1002	Sat Mar  8 04:36:41 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/PatchMgr.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.ci      	Status: Up-to-date

   Working revision:	1.1001	Sat Mar  8 04:36:51 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ProxyMgr.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.ci  	Status: Up-to-date

   Working revision:	1.1001	Sat Mar  8 04:37:10 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ReductionMgr.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1012	Mon Mar 10 17:40:18 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1002	Sat Mar  8 04:37:31 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.1001	Sat Mar  8 04:37:51 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/main.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 10, 1997 @ 11:40
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Modified Files:
	brH 
Log Message:
Setup for testing


===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1011	Mon Mar 10 17:11:48 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Monday March 10, 1997 @ 11:59
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Modified Files:
	Makefile 
Log Message:



===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1023	Mon Mar 10 17:51:13 1997
   Repository revision:	1.1023	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 10, 1997 @ 12:00
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Added Files:
	NamdOneTools.h 
Log Message:
Header for NamdOneTools.C - just externs


===================================================================
File: NamdOneTools.h   	Status: Up-to-date

   Working revision:	1.1	Mon Mar 10 17:59:59 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/NamdOneTools.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday March 10, 1997 @ 14:59
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	CollectionMaster.h 
Log Message:
Added back comparison function needed for ResizeArray.


===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1003	Mon Mar 10 20:59:00 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 10, 1997 @ 22:04
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Sequencer.C Controller.C 
Log Message:
Now properly handles firstTimeStep parameter.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1011	Tue Mar 11 04:04:38 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1005	Tue Mar 11 03:32:49 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 10, 1997 @ 22:05
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src/Templates

Added Files:
	ObjectArena.C ObjectArena.h 
Log Message:
Simple little template for managing lots of little arrays.


===================================================================
File: ObjectArena.C    	Status: Up-to-date

   Working revision:	1.1	Tue Mar 11 04:05:46 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Templates/ObjectArena.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ObjectArena.h    	Status: Up-to-date

   Working revision:	1.1	Tue Mar 11 04:05:46 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Templates/ObjectArena.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday March 10, 1997 @ 22:07
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeAngles.C ComputeBonds.C ComputeDihedrals.C 
	ComputeImpropers.C ComputeNonbondedExcl.C Molecule.C 
	Molecule.h structures.h 
Log Message:
Eliminated use of LintList for by-atom lists.
Now uses little arrays managed by ObjectArena<int>.


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1002	Mon Mar 10 17:55:11 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1002	Mon Mar 10 17:53:34 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1002	Mon Mar 10 17:54:50 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1002	Mon Mar 10 17:54:36 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1006	Mon Mar 10 17:54:21 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1003	Tue Mar 11 04:07:54 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1002	Tue Mar 11 04:07:55 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: structures.h     	Status: Up-to-date

   Working revision:	1.1002	Tue Mar 11 04:07:56 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/structures.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 10, 1997 @ 23:33
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2

Modified Files:
	Makefile 
Log Message:
Added dependencies for new templates.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1024	Tue Mar 11 04:11:16 1997
   Repository revision:	1.1024	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 11, 1997 @ 0:29
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Molecule.C Molecule.h 
Log Message:
Modified exclusion lookup to use fixed arrays and linear searches.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1004	Tue Mar 11 06:29:13 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1003	Tue Mar 11 06:29:14 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 11, 1997 @ 1:30
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Once more change to support firstTimestep parameter.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1012	Tue Mar 11 07:30:20 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 11, 1997 @ 10:37
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeDPMTA.h Molecule.C WorkDistrib.C 
Log Message:
Difference in ElectForce with FMA and non-FMA not due to FMA.
(I'm finally convinced.)


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1026	Tue Mar 11 16:08:47 1997
   Repository revision:	1.1026	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1013	Tue Mar 11 16:37:04 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1005	Tue Mar 11 16:37:06 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1013	Tue Mar 11 16:37:07 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 11, 1997 @ 14:20
Author:	jim

Update of /Projects/l3/cvsroot/namd2/test
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/test

Added Files:
	apoa1 
Log Message:
Added apoa1 test, uses firsttimestep, rather long cycle of 10.


===================================================================
File: apoa1            	Status: Up-to-date

   Working revision:	1.1	Tue Mar 11 03:39:31 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/test/apoa1,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday March 11, 1997 @ 17:46
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2.test/src

Modified Files:
	ComputeHomeTuples.C ComputeHomeTuples.h ComputeNonbondedExcl.C 
	ComputeNonbondedExcl.h Molecule.C Molecule.h 
Log Message:
Improved ComputeNonbondedExcl loadTuples() by overloading the default
template method from ComputeHomeTuples and used the checklist suggested
by Jim.  Good performance gain.


===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1006	Tue Mar 11 23:46:26 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1003	Tue Mar 11 23:46:27 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1007	Tue Mar 11 23:46:28 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.1003	Tue Mar 11 23:46:28 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1006	Tue Mar 11 23:46:29 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1004	Tue Mar 11 23:46:31 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 11, 1997 @ 17:47
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2.test/src/Templates

Modified Files:
	UniqueSet.h UniqueSetRaw.h 
Log Message:
Implemented Hack load() method for  using UniqueSet mearly as "set"
need to unhack this later and have a Set / UniqueSet set :)


===================================================================
File: UniqueSet.h      	Status: Up-to-date

   Working revision:	1.2	Tue Mar 11 23:47:20 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSet.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: UniqueSetRaw.h   	Status: Up-to-date

   Working revision:	1.2	Tue Mar 11 23:47:21 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetRaw.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday March 12, 1997 @ 12:09
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeAngles.h 
Log Message:
Fixed nasty bug in hash function which occasionally caused duplicate
angles to be stored in the hash table.


===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1004	Wed Mar 12 18:09:41 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 12, 1997 @ 16:06
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeFullDirect.C ComputeGeneral.C 
	ComputeGeneral.h ComputeHomePatches.h ComputeHomeTuples.C 
	ComputeHomeTuples.h ComputePatch.C ComputePatch.h 
	ComputePatchPair.C ComputePatchPair.h HomePatch.C HomePatch.h 
	HomePatchTypes.h Migration.h Patch.C Patch.h PatchTypes.h 
	ProxyMgr.C ProxyMgr.h ProxyPatch.C 
Log Message:
First step towards multiple force returns and multiple time stepping.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1027	Tue Mar 11 21:31:52 1997
   Repository revision:	1.1027	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1005	Tue Mar 11 21:34:08 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeGeneral.C 	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 12 22:06:33 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGeneral.h 	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 12 22:06:34 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 12 22:06:35 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1007	Wed Mar 12 22:06:35 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1004	Wed Mar 12 22:06:36 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1002	Wed Mar 12 22:06:37 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.1002	Wed Mar 12 22:06:38 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputePatch.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1005	Wed Mar 12 22:06:38 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.1003	Wed Mar 12 22:06:39 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1021	Wed Mar 12 22:06:40 1997
   Repository revision:	1.1021	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1007	Wed Mar 12 22:06:41 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatchTypes.h 	Status: Up-to-date

   Working revision:	1.1001	Tue Mar 11 21:17:49 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/HomePatchTypes.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.1002	Tue Mar 11 23:07:28 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Migration.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1007	Wed Mar 12 22:06:43 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1005	Wed Mar 12 22:06:44 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.2	Tue Mar 11 22:28:19 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1011	Wed Mar 12 22:06:46 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1004	Wed Mar 12 22:06:47 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1009	Wed Mar 12 22:06:48 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 12, 1997 @ 17:59
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Compute.C Compute.h ComputeNonbondedPair.C 
	ComputeNonbondedPair.h ComputePatchPair.h 
Log Message:
Added Compute::noWork() protocol to not enqueue do-nothing compute objects.


===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1004	Wed Mar 12 23:59:37 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 12 23:59:39 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1004	Wed Mar 12 23:59:41 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1002	Wed Mar 12 23:59:42 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.1004	Wed Mar 12 23:59:44 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 12, 1997 @ 21:25
Author:	jim

Update of /Projects/l3/cvsroot/namd2/test
In directory paris:/private/auto1000143/namd.2.0/Programmers/jim/namd2/test

Removed Files:
	nodes 
Log Message:
This doesn't need to be in cvs and is annoying when it is.


===================================================================
File: no file nodes		Status: Needs Checkout

   Working revision:	No entry for nodes
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/test/Attic/nodes,v


****************************************
Date:	Thursday March 13, 1997 @ 0:37
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeNonbondedExcl.C ComputeNonbondedPair.C 
	ComputeNonbondedPair.h ComputeNonbondedSelf.C 
	ComputeNonbondedSelf.h ComputePatch.C ComputePatch.h 
	ComputePatchPair.C ComputePatchPair.h Sequencer.C 
Log Message:
Multiple time-stepping implemented, still needs proper splitting functions.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1028	Thu Mar 13 06:03:50 1997
   Repository revision:	1.1028	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1008	Thu Mar 13 06:36:57 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1005	Thu Mar 13 06:36:59 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1003	Thu Mar 13 06:37:01 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1003	Thu Mar 13 06:37:03 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.1002	Thu Mar 13 06:37:04 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1003	Thu Mar 13 06:37:06 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.1003	Thu Mar 13 06:37:07 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputePatch.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1006	Thu Mar 13 06:37:09 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.1005	Thu Mar 13 06:37:10 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1013	Thu Mar 13 06:37:12 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 13, 1997 @ 12:26
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C 
Log Message:
Debugging


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1029	Thu Mar 13 18:24:11 1997
   Repository revision:	1.1029	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Thursday March 13, 1997 @ 16:39
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeFullDirect.C ComputeHomeTuples.C ComputeHomeTuples.h 
Log Message:
Fixed some bugs in multiple-force return / full electrostatics.


===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1006	Thu Mar 13 22:12:37 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1008	Thu Mar 13 22:39:35 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1005	Thu Mar 13 22:39:36 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 14, 1997 @ 0:45
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedHack.h 
	ComputeNonbondedUtil.C ComputeNonbondedUtil.h 
Log Message:
First working versions of full electrostatics splitting functions.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1006	Fri Mar 14 06:44:53 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedHack.h	Status: Up-to-date

   Working revision:	1.1003	Fri Mar 14 06:44:55 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedHack.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1003	Fri Mar 14 06:44:56 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1003	Fri Mar 14 06:44:58 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 14, 1997 @ 9:05
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpme2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpme2

Log Message:
Directory /Projects/l3/cvsroot/namd2/dpme2 added to the repository


[input file was '-']

****************************************
Date:	Friday March 14, 1997 @ 9:07
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpme2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpme2

Added Files:
	DPME2.tar.Z Makefile Readme Readme.NAMD2 bspline2.c cfftb.c 
	cfftb1.c cfftf.c cfftf1.c cffti.c cffti1.c charge_grid2.c 
	dpme2.h dpme2_paralibs.c dpme2_pvm.h dpme2_recip_sum.c 
	dpme2_test.c dpme2_utility.c dpme2def.h erfcfun.c f2c.h 
	fftcalls.c passb.c passb2.c passb3.c passb4.c passb5.c passf.c 
	passf2.c passf3.c passf4.c passf5.c pmesh_kspace2.c protype.h 
	pub3dfft.c sample_run small2.pdb 
Log Message:
New DPME2 directory.


===================================================================
File: DPME2.tar.Z      	Status: Up-to-date

   Working revision:	1.1	Mon Mar  3 18:37:27 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/DPME2.tar.Z,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:51:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Readme           	Status: Up-to-date

   Working revision:	1.1	Wed Jan  8 23:06:47 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/Readme,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Readme.NAMD2     	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:54:41 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/Readme.NAMD2,v

   Existing Tags:
	No Tags Exist

===================================================================
File: bspline2.c       	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:29:33 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/bspline2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: cfftb.c          	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/cfftb.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: cfftb1.c         	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/cfftb1.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: cfftf.c          	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/cfftf.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: cfftf1.c         	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/cfftf1.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: cffti.c          	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/cffti.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: cffti1.c         	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/cffti1.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: charge_grid2.c   	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:34:45 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/charge_grid2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2.h          	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:27:33 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/dpme2.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2_paralibs.c 	Status: Up-to-date

   Working revision:	1.1	Fri Mar 14 15:07:01 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/dpme2_paralibs.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2_pvm.h      	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:11:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/dpme2_pvm.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2_recip_sum.c	Status: Up-to-date

   Working revision:	1.1	Fri Mar 14 15:07:03 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/dpme2_recip_sum.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2_test.c     	Status: Up-to-date

   Working revision:	1.1	Fri Mar 14 15:07:04 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/dpme2_test.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2_utility.c  	Status: Up-to-date

   Working revision:	1.1	Fri Mar 14 15:07:05 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/dpme2_utility.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2def.h       	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:27:51 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/dpme2def.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: erfcfun.c        	Status: Up-to-date

   Working revision:	1.1	Wed Jan  8 23:06:23 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/erfcfun.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: f2c.h            	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/f2c.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftcalls.c       	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:29:33 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/fftcalls.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passb.c          	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/passb.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passb2.c         	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/passb2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passb3.c         	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:21 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/passb3.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passb4.c         	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:21 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/passb4.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passb5.c         	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:21 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/passb5.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passf.c          	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:21 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/passf.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passf2.c         	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:21 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/passf2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passf3.c         	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:21 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/passf3.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passf4.c         	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:21 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/passf4.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passf5.c         	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:21 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/passf5.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pmesh_kspace2.c  	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:40:49 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/pmesh_kspace2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: protype.h        	Status: Up-to-date

   Working revision:	1.1	Fri Mar 14 15:07:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/protype.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pub3dfft.c       	Status: Up-to-date

   Working revision:	1.1	Fri Mar  7 16:35:21 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/pub3dfft.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: sample_run       	Status: Up-to-date

   Working revision:	1.1	Wed Jan  8 23:06:54 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/sample_run,v

   Existing Tags:
	No Tags Exist

===================================================================
File: small2.pdb       	Status: Up-to-date

   Working revision:	1.1	Wed Jan  8 23:07:27 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/small2.pdb,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday March 14, 1997 @ 9:10
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpme2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpme2

Modified Files:
	Makefile 
Log Message:
Corrected "Make clean"


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.2	Fri Mar 14 15:10:23 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday March 14, 1997 @ 9:12
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2

Modified Files:
	Makefile 
Log Message:
Modified "make clean"


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.8	Fri Mar 14 15:12:26 1997
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/dpmta2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Friday March 14, 1997 @ 9:12
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/mpole
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/mpole

Modified Files:
	Makefile 
Log Message:
Modified "make clean"


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.4	Fri Mar 14 15:12:30 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Friday March 14, 1997 @ 9:12
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/src

Modified Files:
	Makefile 
Log Message:
Modified "make clean"


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.3	Fri Mar 14 15:12:34 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Friday March 14, 1997 @ 13:07
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C common.h 
Log Message:
DPMTA nodes now synchronize to PMTAresize doesn't crash system.
Later will will use the "new" Broadcast manager.  But since that system
does not exist yet, we use the "old" Communicate object.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1030	Fri Mar 14 18:54:06 1997
   Repository revision:	1.1030	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1002	Fri Mar 14 19:07:54 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 14, 1997 @ 15:38
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Modified Files:
	Makefile 
Log Message:
Just optimization flag


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1025	Fri Mar 14 17:48:58 1997
   Repository revision:	1.1025	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 14, 1997 @ 15:40
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	ComputeMap.C Controller.C Molecule.h Namd.C Node.C Node.ci 
	Node.h PatchMap.C PatchMap.h Sequencer.C WorkDistrib.C 
	WorkDistrib.h 
Log Message:
Reorganized startup to make possible inital load
balancing by changing methods in WorkDistrib.
Also made startup more transparent and easier
to modify.


===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1008	Fri Mar 14 21:40:08 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1006	Thu Mar 13 22:57:38 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1005	Fri Mar 14 21:40:10 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.1002	Fri Mar 14 21:40:10 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Namd.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1008	Fri Mar 14 21:40:11 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1004	Thu Mar 13 03:57:13 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1004	Fri Mar 14 21:40:13 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1006	Fri Mar 14 21:40:14 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1003	Fri Mar 14 21:40:14 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1014	Fri Mar 14 21:40:15 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1014	Fri Mar 14 21:40:16 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1005	Fri Mar 14 21:40:17 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 14, 1997 @ 15:43
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Modified Files:
	brH 
Log Message:
no change


===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1012	Thu Mar 13 21:02:09 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Friday March 14, 1997 @ 17:18
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto1000143/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h 
Log Message:
Implemented C1 splitting for long-range electrostatics.
Energies on sub-timesteps are incorrect.  (Aren't they always?)


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1007	Fri Mar 14 23:18:08 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1004	Fri Mar 14 23:18:13 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1004	Fri Mar 14 23:18:14 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday March 15, 1997 @ 16:14
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2

Modified Files:
	Makefile 
Log Message:
Added ComputeCylindricalBC to list.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1026	Sat Mar 15 22:07:33 1997
   Repository revision:	1.1026	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday March 15, 1997 @ 16:15
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeMgr.C NamdTypes.h ReductionMgr.h Sequencer.C 
	SimParameters.C SimParameters.h WorkDistrib.C WorkDistrib.h 
Added Files:
	ComputeCylindricalBC.C ComputeCylindricalBC.h 
Log Message:
Added ComputeCylindricalBC.  Doesn't break anything but untested and
cylinder is along x axis (will fix soon).


===================================================================
File: ComputeCylindricalBC.C	Status: Up-to-date

   Working revision:	1.1	Sat Mar 15 21:24:41 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ComputeCylindricalBC.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeCylindricalBC.h	Status: Up-to-date

   Working revision:	1.1	Sat Mar 15 21:18:04 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ComputeCylindricalBC.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1006	Sat Mar 15 22:15:25 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1004	Sat Mar 15 22:15:26 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1002	Sat Mar 15 20:59:08 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1015	Sat Mar 15 22:15:29 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1002	Sat Mar 15 22:15:31 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1002	Sat Mar 15 22:15:33 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1015	Sat Mar 15 22:15:35 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1006	Sat Mar 15 22:15:36 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday March 15, 1997 @ 16:16
Author:	jim

Update of /Projects/l3/cvsroot/namd2/test
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/test

Modified Files:
	brH 
Log Message:
Turned off dcd file generation.


===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1013	Sat Mar 15 22:08:31 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Sunday March 16, 1997 @ 13:44
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeCylindricalBC.C ComputeCylindricalBC.h Controller.C 
	SimParameters.C SimParameters.h 
Log Message:
Added cylindricalBCAxis option to cylindrical boundary conditions.


===================================================================
File: ComputeCylindricalBC.C	Status: Up-to-date

   Working revision:	1.2	Sun Mar 16 03:31:37 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ComputeCylindricalBC.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeCylindricalBC.h	Status: Up-to-date

   Working revision:	1.2	Sun Mar 16 03:15:20 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ComputeCylindricalBC.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1007	Sat Mar 15 22:19:25 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1003	Sun Mar 16 19:44:06 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1003	Sun Mar 16 19:44:08 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 16, 1997 @ 16:31
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeAngles.inl 
Log Message:
Removed include Debug.h which was screwing up debugging in .C file.


===================================================================
File: ComputeAngles.inl	Status: Up-to-date

   Working revision:	1.1002	Sun Mar 16 22:31:19 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeAngles.inl,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 16, 1997 @ 16:56
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeAngles.C ComputeAngles.h ComputeBonds.C ComputeBonds.h 
	ComputeDihedrals.C ComputeDihedrals.h ComputeImpropers.C 
	ComputeImpropers.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h Controller.C ReductionMgr.h 
Log Message:
Added virial calculation for all bonded forces.


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1003	Sun Mar 16 22:33:13 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1005	Sun Mar 16 22:56:20 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1003	Sun Mar 16 22:51:04 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1002	Sun Mar 16 22:56:22 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1003	Sun Mar 16 22:33:21 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1002	Sun Mar 16 22:56:25 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1003	Sun Mar 16 22:33:17 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1002	Sun Mar 16 22:56:28 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1005	Sun Mar 16 22:56:29 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1005	Sun Mar 16 22:56:31 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1008	Sun Mar 16 21:26:01 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1003	Sun Mar 16 20:28:37 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 16, 1997 @ 20:52
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2

Modified Files:
	Makefile 
Log Message:
Did cleanups and speedups in preparation for virial calculation.
Fixed minor bug which resulted in incorrect energies for excluded
pairs which were outside of the cutoff radius (VERY rare).


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1027	Sun Mar 16 03:57:13 1997
   Repository revision:	1.1027	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 16, 1997 @ 20:52
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Did cleanups and speedups in preparation for virial calculation.
Fixed minor bug which resulted in incorrect energies for excluded
pairs which were outside of the cutoff radius (VERY rare).


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1008	Mon Mar 17 02:52:13 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 16, 1997 @ 21:15
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Added virial calculation.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1009	Mon Mar 17 03:15:01 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 16, 1997 @ 21:44
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Rearranged final force store for better memory access (I hope).


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1010	Mon Mar 17 03:44:14 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 16, 1997 @ 21:55
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Reordered final force store operations for better work/memory interleaving.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1011	Mon Mar 17 03:55:23 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 16, 1997 @ 22:48
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeFullDirect.C 
Log Message:
Added virial calculation.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1031	Mon Mar 17 04:39:40 1997
   Repository revision:	1.1031	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1007	Mon Mar 17 04:42:50 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)


****************************************
Date:	Monday March 17, 1997 @ 9:50
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Modified Files:
	Makefile 
Log Message:
Updating makefile


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1028	Mon Mar 17 15:21:11 1997
   Repository revision:	1.1028	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 17, 1997 @ 9:50
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpme2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpme2

Modified Files:
	Makefile 
Log Message:
Updating makefile


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.3	Fri Mar 14 19:45:38 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday March 17, 1997 @ 9:50
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/mpole
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/mpole

Modified Files:
	Makefile 
Log Message:
Updating makefile


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.5	Mon Mar 17 15:50:29 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Monday March 17, 1997 @ 9:50
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/src

Modified Files:
	Makefile 
Log Message:
Updating makefile


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.4	Mon Mar 17 15:50:32 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/src/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Monday March 17, 1997 @ 9:50
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Modified Files:
	Makefile 
Log Message:
Updating makefile


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.10	Fri Mar 14 19:46:29 1997
   Repository revision:	1.10	/Projects/l3/cvsroot/namd2/pvm3/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday March 18, 1997 @ 12:09
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	CollectionMaster.C CollectionMaster.h CollectionMgr.h 
	ComputeGeneral.C ComputeHomeTuples.h ComputePatch.C 
	ComputePatchPair.C Controller.C Controller.h HomePatch.C 
	HomePatch.h Namd.h NamdState.C NamdState.h Node.h Output.C 
	Output.h Sequencer.C Sequencer.h 
Log Message:
Revamped collection system to ensure ordering and eliminate
unnecessary collections.  Also reduced make dependencies.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1006	Tue Mar 18 18:03:33 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1004	Mon Mar 17 22:38:56 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1002	Mon Mar 17 21:59:00 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGeneral.C 	Status: Up-to-date

   Working revision:	1.1002	Tue Mar 18 18:08:51 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1006	Tue Mar 18 18:08:53 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1004	Tue Mar 18 18:08:54 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1007	Tue Mar 18 18:08:56 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1009	Tue Mar 18 17:54:49 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1004	Tue Mar 18 17:42:17 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1022	Tue Mar 18 18:09:01 1997
   Repository revision:	1.1022	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1008	Tue Mar 18 18:09:03 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.1005	Tue Mar 18 18:09:05 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Namd.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1005	Tue Mar 18 18:09:06 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1003	Tue Mar 18 18:09:08 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1005	Tue Mar 18 18:09:09 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.3	Tue Mar 18 18:09:11 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: Output.h         	Status: Up-to-date

   Working revision:	1.2	Tue Mar 18 18:09:13 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Output.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1016	Tue Mar 18 18:09:15 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1004	Tue Mar 18 17:42:09 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 18, 1997 @ 12:09
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src/Templates

Modified Files:
	UniqueSetRaw.C UniqueSetRaw.h 
Log Message:
Turned off debug code.


===================================================================
File: UniqueSetRaw.C   	Status: Up-to-date

   Working revision:	1.2	Tue Mar 18 18:09:56 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetRaw.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: UniqueSetRaw.h   	Status: Up-to-date

   Working revision:	1.3	Tue Mar 18 18:09:57 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetRaw.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday March 18, 1997 @ 15:35
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeCylindricalBC.C ComputeCylindricalBC.h ComputeDPMTA.C 
	ComputeFullDirect.C ComputeHomePatches.C ComputeHomePatches.h 
	ComputeHomeTuples.C ComputeHomeTuples.h ComputeNonbondedPair.C 
	ComputeNonbondedPair.h ComputeNonbondedSelf.C 
	ComputeNonbondedSelf.h PatchTypes.h Sequencer.C 
Log Message:
Eliminated fake_seq.  Reductions now use Patch::flags.seq.


===================================================================
File: ComputeCylindricalBC.C	Status: Up-to-date

   Working revision:	1.3	Tue Mar 18 20:43:20 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/ComputeCylindricalBC.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeCylindricalBC.h	Status: Up-to-date

   Working revision:	1.3	Tue Mar 18 20:32:07 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/ComputeCylindricalBC.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1032	Tue Mar 18 20:41:24 1997
   Repository revision:	1.1032	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1008	Tue Mar 18 20:40:41 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.1002	Tue Mar 18 20:33:17 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.1002	Tue Mar 18 21:35:23 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1009	Tue Mar 18 21:35:25 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1007	Tue Mar 18 21:35:26 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1006	Tue Mar 18 21:35:28 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1004	Tue Mar 18 21:35:29 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1004	Tue Mar 18 21:35:30 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.1003	Tue Mar 18 21:35:32 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.3	Tue Mar 18 20:19:08 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1017	Tue Mar 18 21:35:35 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 18, 1997 @ 16:37
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeFullDirect.C 
Log Message:
Fixed bug in fake reductions for no-work steps.


===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1009	Tue Mar 18 22:31:24 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)


****************************************
Date:	Tuesday March 18, 1997 @ 23:50
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Compute.C Compute.h ComputeCylindricalBC.C ComputeGeneral.C 
	ComputeMap.h ComputeMgr.C ComputeMgr.h ComputeNonbondedExcl.C 
	ComputePatch.C ComputePatchPair.C NamdTypes.h Node.h 
	WorkDistrib.C WorkDistrib.h 
Added Files:
	ComputeSphericalBC.C ComputeSphericalBC.h 
Log Message:
Added ComputeSphericalBC, cleaned up make dependencies.


===================================================================
File: ComputeSphericalBC.C	Status: Up-to-date

   Working revision:	1.1	Wed Mar 19 04:17:27 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ComputeSphericalBC.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeSphericalBC.h	Status: Up-to-date

   Working revision:	1.1	Wed Mar 19 04:19:36 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ComputeSphericalBC.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1005	Wed Mar 19 05:49:46 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1002	Wed Mar 19 05:49:48 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeCylindricalBC.C	Status: Up-to-date

   Working revision:	1.4	Wed Mar 19 04:13:26 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/ComputeCylindricalBC.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGeneral.C 	Status: Up-to-date

   Working revision:	1.1003	Wed Mar 19 05:49:52 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1003	Wed Mar 19 05:49:54 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1007	Wed Mar 19 05:49:55 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1004	Wed Mar 19 05:49:57 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1009	Wed Mar 19 05:49:59 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1005	Wed Mar 19 05:50:02 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1008	Wed Mar 19 05:50:04 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1005	Wed Mar 19 05:50:10 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1006	Wed Mar 19 05:50:12 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1016	Wed Mar 19 05:50:14 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1007	Wed Mar 19 05:50:16 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 19, 1997 @ 5:52
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Modified Files:
	Makefile 
Log Message:
No major changes


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1030	Wed Mar 19 11:31:33 1997
   Repository revision:	1.1030	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 19, 1997 @ 5:55
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	BOCgroup.h CollectionMaster.C CollectionMaster.ci 
	CollectionMaster.h CollectionMgr.C CollectionMgr.ci 
	CollectionMgr.h Communicate.C CommunicatePVM.C 
	CommunicatePVM.h ComputeAngles.C ComputeBonds.C 
	ComputeCylindricalBC.C ComputeCylindricalBC.h ComputeDPMTA.C 
	ComputeDihedrals.C ComputeFullDirect.C ComputeHomePatches.C 
	ComputeImpropers.C ComputeMgr.C ComputeMgr.ci 
	ComputeNonbondedExcl.C ConfigList.C ConfigList.h Controller.C 
	Controller.h Debug.h HBondPairData.h HBondParam.C HBondParam.h 
	HomePatchTypes.h InfoStream.C InfoStream.h Inform.C Inform.h 
	IntList.h IntTree.C IntTree.h LJTable.C Lattice.h LintList.h 
	Message.C Message.h MessageManager.C MessageManager.h 
	MessageQueue.C MessageQueue.h MigrateAtomsMsg.h Migration.h 
	Molecule.C Molecule.h Namd.C Node.C Node.ci Output.C Output.h 
	PDB.C PDB.h PDBData.C PDBData.h Parameters.C Parameters.h 
	ParseOptions.C ParseOptions.h Patch.C PatchMap.C PatchMgr.ci 
	PatchTypes.h PositionBox.C PositionBox.h PositionOwnerBox.C 
	PositionOwnerBox.h ProxyMgr.ci ReductionMgr.C ReductionMgr.ci 
	ReductionMgr.h Sequencer.C Sequencer.h SimParameters.C 
	Vector.h WorkDistrib.ci common.C common.h dcdlib.C dcdlib.h 
	main.C main.ci strlib.C strlib.h 
Added Files:
	BroadcastClient.C BroadcastClient.h BroadcastMgr.C 
	BroadcastMgr.ci BroadcastMgr.h BroadcastObject.C 
	BroadcastObject.h 
Log Message:
Add Broadcast mechanism.
Fixed RCS Log entries on files that did not have Log entries.
Added some register variables to Molecule and ComputeNonbondedExcl.C


===================================================================
File: BroadcastClient.C	Status: Up-to-date

   Working revision:	1.1	Wed Mar 19 11:53:51 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/BroadcastClient.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BroadcastClient.h	Status: Up-to-date

   Working revision:	1.1	Wed Mar 19 11:53:51 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/BroadcastClient.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BroadcastMgr.C   	Status: Up-to-date

   Working revision:	1.1	Wed Mar 19 11:53:52 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BroadcastMgr.ci  	Status: Up-to-date

   Working revision:	1.1	Wed Mar 19 11:53:53 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.ci,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BroadcastMgr.h   	Status: Up-to-date

   Working revision:	1.1	Wed Mar 19 11:53:54 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BroadcastObject.C	Status: Up-to-date

   Working revision:	1.1	Wed Mar 19 11:53:54 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/BroadcastObject.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BroadcastObject.h	Status: Up-to-date

   Working revision:	1.1	Wed Mar 19 11:53:55 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/BroadcastObject.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:53:50 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/BOCgroup.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1007	Wed Mar 19 11:53:56 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.ci	Status: Up-to-date

   Working revision:	1.1002	Wed Mar 19 11:53:57 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/CollectionMaster.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1005	Wed Mar 19 11:53:57 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:53:58 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.ci 	Status: Up-to-date

   Working revision:	1.1002	Wed Mar 19 11:53:59 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/CollectionMgr.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1003	Wed Mar 19 11:53:59 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Communicate.C    	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:00 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Communicate.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicatePVM.C 	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:01 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/CommunicatePVM.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicatePVM.h 	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:02 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/CommunicatePVM.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1004	Wed Mar 19 11:54:02 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1004	Wed Mar 19 11:54:03 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeCylindricalBC.C	Status: Up-to-date

   Working revision:	1.5	Wed Mar 19 11:54:04 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/ComputeCylindricalBC.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeCylindricalBC.h	Status: Up-to-date

   Working revision:	1.4	Wed Mar 19 11:54:05 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/ComputeCylindricalBC.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1033	Wed Mar 19 11:54:05 1997
   Repository revision:	1.1033	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1004	Wed Mar 19 11:54:06 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1010	Wed Mar 19 11:54:07 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.1003	Wed Mar 19 11:54:08 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1004	Wed Mar 19 11:54:09 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1008	Wed Mar 19 11:54:09 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.ci    	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:10 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeMgr.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1010	Wed Mar 19 11:54:11 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:12 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ConfigList.h     	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:12 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ConfigList.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1010	Wed Mar 19 11:54:13 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1005	Wed Mar 19 11:54:14 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Debug.h          	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:15 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Debug.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HBondPairData.h  	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:15 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/HBondPairData.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: HBondParam.C     	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:16 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/HBondParam.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: HBondParam.h     	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:17 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/HBondParam.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatchTypes.h 	Status: Up-to-date

   Working revision:	1.1002	Wed Mar 19 11:54:18 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/HomePatchTypes.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.C     	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:18 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/InfoStream.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:19 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/InfoStream.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Inform.C         	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:20 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Inform.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Inform.h         	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:20 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Inform.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IntList.h        	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:21 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/IntList.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IntTree.C        	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:22 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/IntTree.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IntTree.h        	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:22 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/IntTree.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.1003	Wed Mar 19 11:54:23 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/LJTable.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1002	Wed Mar 19 11:54:24 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LintList.h       	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:25 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/LintList.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Message.C        	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:25 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Message.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Message.h        	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:26 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Message.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MessageManager.C 	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:27 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/MessageManager.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MessageManager.h 	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:28 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/MessageManager.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MessageQueue.C   	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:28 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/MessageQueue.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MessageQueue.h   	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:29 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/MessageQueue.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MigrateAtomsMsg.h	Status: Up-to-date

   Working revision:	1.4	Wed Mar 19 11:54:30 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/MigrateAtomsMsg.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.1003	Wed Mar 19 11:54:31 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Migration.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1007	Wed Mar 19 11:54:32 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1006	Wed Mar 19 11:54:33 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.1003	Wed Mar 19 11:54:34 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Namd.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1009	Wed Mar 19 11:54:35 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1005	Wed Mar 19 11:54:35 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.4	Wed Mar 19 11:54:36 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: Output.h         	Status: Up-to-date

   Working revision:	1.3	Wed Mar 19 11:54:38 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Output.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:39 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.h            	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:40 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/PDB.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.C        	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:40 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/PDBData.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.h        	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:41 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/PDBData.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:42 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:44 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Parameters.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1003	Wed Mar 19 11:54:44 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.h   	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:45 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ParseOptions.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1008	Wed Mar 19 11:54:46 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1007	Wed Mar 19 11:54:47 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.ci      	Status: Up-to-date

   Working revision:	1.1003	Wed Mar 19 11:54:48 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/PatchMgr.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.4	Wed Mar 19 11:54:48 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PositionBox.C    	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:49 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/PositionBox.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionBox.h    	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:54:50 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/PositionBox.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionOwnerBox.C	Status: Up-to-date

   Working revision:	1.1002	Wed Mar 19 11:54:50 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: PositionOwnerBox.h	Status: Up-to-date

   Working revision:	1.1002	Wed Mar 19 11:54:51 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: ProxyMgr.ci      	Status: Up-to-date

   Working revision:	1.1002	Wed Mar 19 11:54:52 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ProxyMgr.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1011	Wed Mar 19 11:54:53 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.ci  	Status: Up-to-date

   Working revision:	1.1002	Wed Mar 19 11:54:53 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ReductionMgr.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1004	Wed Mar 19 11:54:54 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1018	Wed Mar 19 11:54:55 1997
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1005	Wed Mar 19 11:54:56 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1004	Wed Mar 19 11:54:57 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.1002	Wed Mar 19 11:54:58 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Vector.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1003	Wed Mar 19 11:54:59 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1004	Wed Mar 19 11:54:59 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/common.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1003	Wed Mar 19 11:55:00 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.2	Wed Mar 19 11:55:01 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dcdlib.h         	Status: Up-to-date

   Working revision:	1.2	Wed Mar 19 11:55:02 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/dcdlib.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1003	Wed Mar 19 11:55:03 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/main.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.1002	Wed Mar 19 11:55:04 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/main.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: strlib.C         	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:55:04 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/strlib.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: strlib.h         	Status: Up-to-date

   Working revision:	1.1001	Wed Mar 19 11:55:05 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/strlib.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 19, 1997 @ 12:10
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C Molecule.C Molecule.h Patch.h SimParameters.C 
Added Files:
	Hydrogen.h 
Log Message:
Added sorted hydrogen group list to molecule.


===================================================================
File: Hydrogen.h       	Status: Up-to-date

   Working revision:	1.1	Wed Mar 19 17:57:58 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Hydrogen.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1034	Wed Mar 19 18:10:10 1997
   Repository revision:	1.1034	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1008	Wed Mar 19 18:10:13 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1007	Wed Mar 19 18:10:15 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1006	Wed Mar 19 18:10:15 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1005	Wed Mar 19 18:10:17 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 19, 1997 @ 12:47
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C Hydrogen.h 
Log Message:
Added log info to Hydrogen.h
Fixed ComputeDPMTA.C so node 0 initializes before any other nodes register
with the DPMTA library.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1035	Wed Mar 19 18:47:29 1997
   Repository revision:	1.1035	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: Hydrogen.h       	Status: Up-to-date

   Working revision:	1.2	Wed Mar 19 18:47:30 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Hydrogen.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday March 19, 1997 @ 12:48
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	Hydrogen.h 
Log Message:
Forgot to close the log comment.


===================================================================
File: Hydrogen.h       	Status: Up-to-date

   Working revision:	1.3	Wed Mar 19 18:48:19 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Hydrogen.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday March 19, 1997 @ 14:49
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Hydrogen.h 
Log Message:
Changes to make inliner happy.


===================================================================
File: Hydrogen.h       	Status: Up-to-date

   Working revision:	1.4	Wed Mar 19 20:49:20 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/Hydrogen.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday March 19, 1997 @ 16:44
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Controller.C Controller.h Sequencer.C Sequencer.h 
Log Message:
Revamped Controller/Sequencer, added velocity rescaling.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1011	Wed Mar 19 22:44:21 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1006	Wed Mar 19 22:44:23 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1019	Wed Mar 19 22:44:24 1997
   Repository revision:	1.1019	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1006	Wed Mar 19 22:44:26 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 20, 1997 @ 9:38
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	Parameters.C 
Log Message:
Added "\n" before endi in iout statements.
Removed endi from DebugM() calls.


===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1002	Thu Mar 20 15:38:30 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 20, 1997 @ 10:58
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	Hydrogen.h Molecule.C 
Log Message:
Atoms now sorted by: (1) hydrogen groups, (2) "groups".  The groups are
in the order: non-special, OH (special-1), OHH (special-2).
All waters (OHH) are at the end of the list.
Before them, all hydroxyls (OH) are together.  Although I haven't been
told to do this, it shouldn't hurt anything.  (And it's easier than adding
one more "if" to the sorting.)


===================================================================
File: Hydrogen.h       	Status: Up-to-date

   Working revision:	1.5	Thu Mar 20 16:58:35 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/Hydrogen.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1009	Thu Mar 20 16:58:36 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 20, 1997 @ 11:28
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Moved debugging code.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1010	Thu Mar 20 17:28:36 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 20, 1997 @ 13:44
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/mpole
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/mpole

Modified Files:
	Makefile mpe.h mpe_fft.c mpe_mpoleC.c mpe_mpoleLJ.c 
Log Message:
Changed debug statements to use CmiPrintf rather than stderr.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.6	Thu Mar 20 19:44:06 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: mpe.h            	Status: Up-to-date

   Working revision:	1.2	Thu Mar 20 19:44:06 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/mpole/mpe.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: mpe_fft.c        	Status: Up-to-date

   Working revision:	1.2	Thu Mar 20 19:44:07 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/mpole/mpe_fft.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: mpe_mpoleC.c     	Status: Up-to-date

   Working revision:	1.2	Thu Mar 20 19:44:08 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/mpole/mpe_mpoleC.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: mpe_mpoleLJ.c    	Status: Up-to-date

   Working revision:	1.2	Thu Mar 20 19:44:09 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/mpole/mpe_mpoleLJ.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday March 20, 1997 @ 13:44
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/src

Modified Files:
	dpmta.h dpmta_direct.c dpmta_error.c dpmta_mastiface.c 
	dpmta_mastiter.c dpmta_slave.c dpmta_slvcomm.c 
	dpmta_slvmcalc.c dpmta_slvmkcell.c dpmta_slvmkiil.c 
	dpmta_slvmkil.c dpmta_slvpcalc.c 
Log Message:
Changed debug statements to use CmiPrintf rather than stderr.


===================================================================
File: dpmta.h          	Status: Up-to-date

   Working revision:	1.3	Thu Mar 20 19:44:13 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_direct.c   	Status: Up-to-date

   Working revision:	1.3	Thu Mar 20 19:44:14 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_direct.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_error.c    	Status: Up-to-date

   Working revision:	1.2	Thu Mar 20 19:44:14 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_error.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_mastiface.c	Status: Up-to-date

   Working revision:	1.3	Thu Mar 20 19:44:15 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_mastiface.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_mastiter.c 	Status: Up-to-date

   Working revision:	1.5	Thu Mar 20 19:44:16 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_mastiter.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slave.c    	Status: Up-to-date

   Working revision:	1.3	Thu Mar 20 19:44:17 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slave.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slvcomm.c  	Status: Up-to-date

   Working revision:	1.4	Thu Mar 20 19:44:18 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvcomm.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slvmcalc.c 	Status: Up-to-date

   Working revision:	1.2	Thu Mar 20 19:44:19 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmcalc.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slvmkcell.c	Status: Up-to-date

   Working revision:	1.3	Thu Mar 20 19:44:20 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmkcell.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slvmkiil.c 	Status: Up-to-date

   Working revision:	1.3	Thu Mar 20 19:44:21 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmkiil.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slvmkil.c  	Status: Up-to-date

   Working revision:	1.2	Thu Mar 20 19:44:22 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmkil.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slvpcalc.c 	Status: Up-to-date

   Working revision:	1.2	Thu Mar 20 19:44:22 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvpcalc.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday March 20, 1997 @ 13:45
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C 
Log Message:
Moved syncronize point in doWork to fix timing problem.  (Very weird.)


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1036	Thu Mar 20 19:45:08 1997
   Repository revision:	1.1036	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Thursday March 20, 1997 @ 17:51
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2

Modified Files:
	Makefile 
Log Message:
Option changes


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1031	Thu Mar 20 21:54:37 1997
   Repository revision:	1.1031	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 20, 1997 @ 17:53
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	Communicate.C Communicate.h CommunicateConverse.h 
	CommunicatePVM.C CommunicatePVM.h Compute.C Compute.h 
	ComputeAngles.C ComputeAngles.inl ComputeBonds.C 
	ComputeBonds.h ComputeCylindricalBC.C ComputeCylindricalBC.h 
	ComputeDPMTA.C ComputeDPMTA.h ComputeDihedrals.C 
	ComputeDihedrals.inl ComputeFullDirect.C ComputeFullDirect.h 
	ComputeMap.C ComputeMap.h ComputeMgr.C ComputeMgr.h 
	ComputeNonbondedUtil.C ComputeNonbondedUtil.h Node.C 
	ProxyMgr.C ProxyMgr.h 
Log Message:
Some changes for comments. Copyright date additions.
Hooks for base level update of Compute objects from ComputeMap
by ComputeMgr.  Useful for new compute migration functionality.


===================================================================
File: Communicate.C    	Status: Up-to-date

   Working revision:	1.1002	Thu Mar 20 23:53:06 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Communicate.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Communicate.h    	Status: Up-to-date

   Working revision:	1.1002	Thu Mar 20 23:53:11 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Communicate.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicateConverse.h	Status: Up-to-date

   Working revision:	1.1002	Thu Mar 20 23:53:17 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/CommunicateConverse.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicatePVM.C 	Status: Up-to-date

   Working revision:	1.1002	Thu Mar 20 23:53:19 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/CommunicatePVM.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CommunicatePVM.h 	Status: Up-to-date

   Working revision:	1.1002	Thu Mar 20 23:53:23 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/CommunicatePVM.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1006	Thu Mar 20 23:53:26 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1003	Thu Mar 20 23:53:27 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1005	Thu Mar 20 23:53:27 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.inl	Status: Up-to-date

   Working revision:	1.1003	Thu Mar 20 23:53:28 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeAngles.inl,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1005	Thu Mar 20 23:53:29 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1003	Thu Mar 20 23:53:30 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeCylindricalBC.C	Status: Up-to-date

   Working revision:	1.6	Thu Mar 20 23:53:31 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/ComputeCylindricalBC.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeCylindricalBC.h	Status: Up-to-date

   Working revision:	1.5	Thu Mar 20 23:53:32 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/ComputeCylindricalBC.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1037	Thu Mar 20 23:53:33 1997
   Repository revision:	1.1037	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1014	Thu Mar 20 23:53:34 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1005	Thu Mar 20 23:53:34 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.inl	Status: Up-to-date

   Working revision:	1.1001	Thu Mar 20 23:53:35 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.inl,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1011	Thu Mar 20 23:53:36 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirect.h	Status: Up-to-date

   Working revision:	1.1001	Thu Mar 20 23:53:37 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1009	Thu Mar 20 23:53:38 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1004	Thu Mar 20 23:53:39 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1009	Thu Mar 20 23:53:40 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1005	Thu Mar 20 23:53:42 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1006	Thu Mar 20 23:53:43 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1006	Thu Mar 20 23:53:44 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1010	Thu Mar 20 23:53:45 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1012	Thu Mar 20 23:53:48 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1005	Thu Mar 20 23:53:50 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 20, 1997 @ 17:55
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src/Templates.new

Modified Files:
	UniqueSetIter.h 
Log Message:
No change


===================================================================
File: UniqueSetIter.h  	Status: Up-to-date

   Working revision:	1.2	Thu Mar 20 23:54:59 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetIter.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday March 20, 1997 @ 17:55
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/test

Modified Files:
	brH 
Log Message:
No change


===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1014	Thu Mar 20 07:47:28 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Friday March 21, 1997 @ 10:36
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	Hydrogen.h Node.C 
Log Message:
Modified sorting case when both atoms are group members.
Was incorrectly sorting them by their atomID.  Now sorting by GPID.
Also turned off debugging in Node.C.


===================================================================
File: Hydrogen.h       	Status: Up-to-date

   Working revision:	1.6	Fri Mar 21 16:35:59 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/Hydrogen.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1011	Fri Mar 21 16:36:00 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 21, 1997 @ 17:05
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Controller.C Controller.h Lattice.h NamdState.C NamdState.h 
	Sequencer.C Sequencer.h SimParameters.C SimParameters.h 
	common.h 
Added Files:
	Broadcasts.h 
Log Message:
Added Berendsen's pressure coupling method, won't work with MTS yet.


===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.1	Fri Mar 21 23:05:31 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1012	Fri Mar 21 23:05:33 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1007	Fri Mar 21 23:05:35 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1003	Fri Mar 21 23:05:36 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1006	Fri Mar 21 23:05:38 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1004	Fri Mar 21 23:05:39 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1020	Fri Mar 21 23:05:41 1997
   Repository revision:	1.1020	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1007	Fri Mar 21 23:05:43 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1006	Fri Mar 21 23:05:45 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1004	Fri Mar 21 23:05:47 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1004	Fri Mar 21 23:05:49 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 23, 1997 @ 19:44
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	NamdOneTools.C NamdOneTools.h NamdState.C Sequencer.C 
	Sequencer.h 
Log Message:
Added Langevin dynamics.


===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.3	Mon Mar 24 01:43:56 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdOneTools.h   	Status: Up-to-date

   Working revision:	1.2	Mon Mar 24 01:43:58 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/NamdOneTools.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1007	Mon Mar 24 01:43:59 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1021	Mon Mar 24 01:44:01 1997
   Repository revision:	1.1021	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1008	Mon Mar 24 01:44:02 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 24, 1997 @ 11:07
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/mpole
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/mpole

Modified Files:
	mpe_mpoleC.c mpe_mpoleLJ.c 
Log Message:
Added malloc, calloc, and realloc checking for all memory allocations.
When it fails, it prints a warning using CmiPrintf.


===================================================================
File: mpe_mpoleC.c     	Status: Up-to-date

   Working revision:	1.3	Mon Mar 24 17:07:22 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/mpole/mpe_mpoleC.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: mpe_mpoleLJ.c    	Status: Up-to-date

   Working revision:	1.3	Mon Mar 24 17:07:24 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/mpole/mpe_mpoleLJ.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Monday March 24, 1997 @ 11:07
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpmta2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpmta2/src

Modified Files:
	dpmta_direct.c dpmta_error.c dpmta_mastiter.c dpmta_slvcomm.c 
	dpmta_slvmacro.c dpmta_slvmkhl.c dpmta_slvmkiil.c 
Log Message:
Added malloc, calloc, and realloc checking for all memory allocations.
When it fails, it prints a warning using CmiPrintf.


===================================================================
File: dpmta_direct.c   	Status: Up-to-date

   Working revision:	1.4	Mon Mar 24 17:07:28 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_direct.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_error.c    	Status: Up-to-date

   Working revision:	1.3	Mon Mar 24 17:07:29 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_error.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_mastiter.c 	Status: Up-to-date

   Working revision:	1.6	Mon Mar 24 17:07:30 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_mastiter.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slvcomm.c  	Status: Up-to-date

   Working revision:	1.5	Mon Mar 24 17:07:31 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvcomm.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slvmacro.c 	Status: Up-to-date

   Working revision:	1.3	Mon Mar 24 17:07:32 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmacro.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slvmkhl.c  	Status: Up-to-date

   Working revision:	1.2	Mon Mar 24 17:07:33 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmkhl.c,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: dpmta_slvmkiil.c 	Status: Up-to-date

   Working revision:	1.4	Mon Mar 24 17:07:33 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/src/dpmta_slvmkiil.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Monday March 24, 1997 @ 22:05
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Sequencer.C Sequencer.h 
Log Message:
Simplified algorithm a bit.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1022	Tue Mar 25 04:04:57 1997
   Repository revision:	1.1022	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1009	Tue Mar 25 04:04:59 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 25, 1997 @ 10:57
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeDPMTA.h Controller.C 
Log Message:
Added PBC scaling to DPMTA.
Turned off debugging code in Controller.C.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1038	Tue Mar 25 16:57:47 1997
   Repository revision:	1.1038	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1015	Tue Mar 25 16:57:48 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1013	Tue Mar 25 16:57:49 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 25, 1997 @ 17:01
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedExcl.C ComputeNonbondedPair.C 
	ComputeNonbondedSelf.C PatchTypes.h Sequencer.C 
	SimParameters.C SimParameters.h 
Log Message:
Added nonbondedFrequency parameter and multiple time-stepping


===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1011	Tue Mar 25 23:00:56 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1007	Tue Mar 25 23:00:57 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1005	Tue Mar 25 23:00:59 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.5	Tue Mar 25 23:01:00 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1023	Tue Mar 25 23:01:02 1997
   Repository revision:	1.1023	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1007	Tue Mar 25 23:01:03 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1005	Tue Mar 25 23:01:05 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 26, 1997 @ 21:17
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeDPMTA.h Controller.C ReductionMgr.h 
	Sequencer.C SimParameters.C 
Log Message:
Added code to check virial calculation, fixed problems with DPMTA and PBC's.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1039	Thu Mar 27 03:16:50 1997
   Repository revision:	1.1039	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1016	Thu Mar 27 03:16:51 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1014	Thu Mar 27 03:16:53 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1005	Thu Mar 27 03:16:54 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1024	Thu Mar 27 03:16:56 1997
   Repository revision:	1.1024	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1008	Thu Mar 27 03:16:57 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 27, 1997 @ 2:04
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeDPMTA.C HomePatch.C HomePatch.h Lattice.h PatchMap.C 
	PatchMap.h Sequencer.C SimParameters.C SimParameters.h 
	WorkDistrib.C 
Log Message:
Reworked Lattice to keep center of cell fixed during rescaling.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1040	Thu Mar 27 08:04:14 1997
   Repository revision:	1.1040	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1023	Thu Mar 27 08:04:16 1997
   Repository revision:	1.1023	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1009	Thu Mar 27 08:04:17 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1004	Thu Mar 27 08:04:18 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1008	Thu Mar 27 08:04:20 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1004	Thu Mar 27 08:04:21 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1025	Thu Mar 27 08:04:23 1997
   Repository revision:	1.1025	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1009	Thu Mar 27 08:04:24 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1006	Thu Mar 27 08:04:26 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1017	Thu Mar 27 08:04:27 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 27, 1997 @ 10:04
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeDPMTA.h 
Log Message:
Removed init() -- no longer necessary.  Thanks Jim!
Turned off debugging.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1041	Thu Mar 27 16:04:49 1997
   Repository revision:	1.1041	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1017	Thu Mar 27 16:04:50 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Thursday March 27, 1997 @ 11:08
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeDPMTA.C Molecule.h SimParameters.C SimParameters.h 
	WorkDistrib.C 
Log Message:
Added hydrogen groupings.  Now configuration parameter "splitPatch" determines
atom-into-patch distribution.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1042	Thu Mar 27 17:08:30 1997
   Repository revision:	1.1042	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1008	Thu Mar 27 17:08:30 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1010	Thu Mar 27 17:08:31 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1007	Thu Mar 27 17:08:32 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1018	Thu Mar 27 17:08:33 1997
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 27, 1997 @ 14:25
Author:	brunner

Update of /Projects/l3/cvsroot/namd2
In directory hamlet:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2

Modified Files:
	Makefile 
Log Message:
Added LdbCoordinator.[C,ci]


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1032	Wed Mar 26 23:13:28 1997
   Repository revision:	1.1032	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 27, 1997 @ 14:25
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	BOCgroup.h ComputeMap.C ComputeMap.h ComputeMgr.C 
	ComputeNonbondedPair.C ComputeNonbondedSelf.C HomePatch.C 
	HomePatch.h Namd.C Node.C Node.h PatchTypes.h Sequencer.C 
	Sequencer.h 
Added Files:
	LdbCoordinator.C LdbCoordinator.ci LdbCoordinator.h 
Log Message:
Changes for LdbCoordinator, the load balance control BOC


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.1	Thu Mar 27 01:09:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.ci	Status: Up-to-date

   Working revision:	1.1	Thu Mar 27 20:25:46 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.ci,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.1	Thu Mar 27 20:25:47 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.1002	Thu Mar 27 20:25:39 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/BOCgroup.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1010	Thu Mar 27 20:25:40 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1005	Thu Mar 27 20:25:41 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1010	Thu Mar 27 20:25:41 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1008	Thu Mar 27 20:25:42 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1006	Thu Mar 27 20:25:43 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1024	Thu Mar 27 20:25:44 1997
   Repository revision:	1.1024	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1010	Thu Mar 27 20:25:45 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.1004	Thu Mar 27 20:25:48 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Namd.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1012	Thu Mar 27 20:25:49 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1007	Thu Mar 27 20:25:50 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.6	Thu Mar 27 20:25:50 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1026	Thu Mar 27 20:25:51 1997
   Repository revision:	1.1026	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1010	Thu Mar 27 20:25:52 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 27, 1997 @ 15:30
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2

Modified Files:
	Makefile 
Log Message:
make depends now works on io


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1033	Thu Mar 27 21:27:29 1997
   Repository revision:	1.1033	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 31, 1997 @ 10:12
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	HomePatch.C Molecule.C Molecule.h structures.h 
Log Message:
Atoms now can migrate by hydrogen groups.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1025	Mon Mar 31 16:12:51 1997
   Repository revision:	1.1025	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1011	Mon Mar 31 16:12:53 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1009	Mon Mar 31 16:12:54 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: structures.h     	Status: Up-to-date

   Working revision:	1.1003	Mon Mar 31 16:12:55 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/structures.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 31, 1997 @ 13:23
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Hard-coded +2 angstrom increase in patch margin when using hydrogen grouping.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1011	Mon Mar 31 19:23:04 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 1, 1997 @ 12:08
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	LdbCoordinator.C LdbCoordinator.h 
Log Message:
Made counts work right for first cycle


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.2	Mon Mar 31 23:05:33 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.2	Tue Apr  1 18:08:44 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday April 1, 1997 @ 17:19
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	LdbCoordinator.C 
Log Message:
Collection on node 0 added


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.3	Tue Apr  1 22:25:53 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday April 1, 1997 @ 17:20
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	LdbCoordinator.h Sequencer.C 
Log Message:
Collection on node 0 added


===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.3	Tue Apr  1 23:20:16 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1027	Tue Apr  1 23:20:17 1997
   Repository revision:	1.1027	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 2, 1997 @ 11:07
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Modified Files:
	Makefile 
Log Message:
Changed so CHARM directory only needs to be defined in 1 place.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1034	Wed Apr  2 17:06:59 1997
   Repository revision:	1.1034	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 2, 1997 @ 11:09
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src/Templates

Modified Files:
	ResizeArrayRaw.h 
Log Message:
Modified to remove some g++ errors.


===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.2	Wed Apr  2 17:09:06 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayRaw.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday April 2, 1997 @ 15:29
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ReductionMgr.C 
Log Message:
Fixed bad assumption about first sequence number being 0.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1012	Wed Apr  2 21:29:41 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 3, 1997 @ 11:57
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	CommunicateConverse.h 
Log Message:
Changes for new charm



===================================================================
File: CommunicateConverse.h	Status: Up-to-date

   Working revision:	1.1003	Thu Apr  3 17:57:43 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/CommunicateConverse.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 3, 1997 @ 11:58
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/pvm3

Modified Files:
	pvmc_main.c 
Log Message:
Changes for new Charm.  Incomplete on pvmc_main.c



===================================================================
File: pvmc_main.c      	Status: Up-to-date

   Working revision:	1.2	Thu Apr  3 17:47:55 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/pvm3/pvmc_main.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday April 3, 1997 @ 12:04
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/pvm3

Modified Files:
	pvmc_main.c 
Log Message:
oops, try this version


===================================================================
File: pvmc_main.c      	Status: Up-to-date

   Working revision:	1.3	Thu Apr  3 18:02:27 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/pvm3/pvmc_main.c,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday April 3, 1997 @ 13:29
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Added Files:
	Makearch.HPUX10 Makearch.HPUX9 Makearch.g++ Makearch.template 
Log Message:
Architecture (platform) dependent stuff


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.1	Thu Apr  3 19:27:41 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/Makearch.HPUX10,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.HPUX9   	Status: Up-to-date

   Working revision:	1.1	Thu Apr  3 19:26:37 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/Makearch.HPUX9,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.g++     	Status: Up-to-date

   Working revision:	1.1	Thu Apr  3 19:28:16 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/Makearch.g++,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.template	Status: Up-to-date

   Working revision:	1.1	Thu Apr  3 19:26:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/Makearch.template,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday April 3, 1997 @ 13:29
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Modified Files:
	Makefile 
Log Message:
Makefile which includes architecure definitions


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1035	Thu Apr  3 19:17:27 1997
   Repository revision:	1.1035	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 3, 1997 @ 13:49
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/pvm3

Modified Files:
	Makefile 
Log Message:
Correcting -g -O makefile errors.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.11	Thu Apr  3 19:48:40 1997
   Repository revision:	1.11	/Projects/l3/cvsroot/namd2/pvm3/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday April 3, 1997 @ 13:59
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ConfigList.C Molecule.C Molecule.h NamdOneTools.C NamdTypes.h 
	PDB.C Parameters.C Patch.C Patch.h WorkDistrib.C common.C 
	common.h 
Log Message:
1) New Fopen() which handles .Z and .gz files.
2) localWaters and localNonWaters lists on each patch.


===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1002	Thu Apr  3 19:59:01 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1012	Thu Apr  3 19:59:03 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1010	Thu Apr  3 19:59:05 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.4	Thu Apr  3 19:59:06 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1006	Thu Apr  3 19:59:07 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1002	Thu Apr  3 19:59:09 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1003	Thu Apr  3 19:59:10 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1009	Thu Apr  3 19:59:11 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1007	Thu Apr  3 19:59:12 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1019	Thu Apr  3 19:59:13 1997
   Repository revision:	1.1019	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1005	Thu Apr  3 19:59:14 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/common.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1005	Thu Apr  3 19:59:15 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 3, 1997 @ 13:59
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src/Templates

Modified Files:
	ResizeArrayRaw.h 
Log Message:
Modified to remove *some* g++ complaints.
(No changes in performance.)


===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.3	Thu Apr  3 19:59:40 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayRaw.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday April 3, 1997 @ 17:22
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Compute.C Compute.h ComputeNonbondedPair.C 
	ComputeNonbondedPair.h 
Added Files:
	Priorities.h 
Log Message:
Added basic priority() method to Compute.  Only distinguishes between
local and nonlocal computations for now.


===================================================================
File: Priorities.h     	Status: Up-to-date

   Working revision:	1.1	Thu Apr  3 23:22:23 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Priorities.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1007	Thu Apr  3 23:22:16 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1004	Thu Apr  3 23:22:18 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1009	Thu Apr  3 23:22:19 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1005	Thu Apr  3 23:22:21 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday April 4, 1997 @ 11:30
Author:	brunner

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2

Modified Files:
	Makearch.HPUX9 
Log Message:



===================================================================
File: Makearch.HPUX9   	Status: Up-to-date

   Working revision:	1.2	Thu Apr  3 21:37:47 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/Makearch.HPUX9,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday April 4, 1997 @ 11:31
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	CommunicateConverse.C LdbCoordinator.C LdbCoordinator.h 
	ReductionMgr.C SimParameters.h common.C 
Log Message:
New charm fixes for CommunicateConverse, and LdbCoordinator data file
output, required proxies, and idle time.


===================================================================
File: CommunicateConverse.C	Status: Up-to-date

   Working revision:	1.1005	Fri Apr  4 17:31:40 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/CommunicateConverse.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.4	Fri Apr  4 16:55:54 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.4	Fri Apr  4 17:31:42 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1013	Fri Apr  4 17:31:42 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1008	Fri Apr  4 17:31:43 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1006	Fri Apr  4 17:31:44 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/common.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday April 4, 1997 @ 11:33
Author:	milind

Update of /Projects/l3/cvsroot/CVSROOT
In directory hamlet:/tmp_mnt/Projects/l1/namd.2.0/Programmers/milind/CVSROOT

Modified Files:
	loginfo 
Log Message:
Added commands to send mail to namd development group on checkin.


===================================================================
File: loginfo          	Status: Up-to-date

   Working revision:	1.2	Fri Apr  4 17:33:08 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/CVSROOT/loginfo,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday April 4, 1997 @ 14:17
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Modified Files:
	Makefile 
Log Message:
Removed dpme2.a from the compilation (for now).


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1036	Fri Apr  4 20:16:34 1997
   Repository revision:	1.1036	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday April 4, 1997 @ 14:52
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	LdbCoordinator.C 
Log Message:
Made #define for timer calls



===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.5	Fri Apr  4 20:37:09 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday April 4, 1997 @ 16:28
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l1/namd.2.0/Programmers/ari/namd2/src

Modified Files:
	Node.C 
Log Message:
Removed quiescence detection after the initial startup phase.


===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1013	Fri Apr  4 22:28:54 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday April 4, 1997 @ 17:34
Author:	milind

Update of /Projects/l3/cvsroot/namd2
In directory hamlet:/tmp/cvs-serv29177

Modified Files:
	Makefile 
Added Files:
	Makearch.Origin2000 
Log Message:
Got NAMD2 to run on Origin2000.
Included definitions of class static variables in C files.
Fixed alignment bugs by using memcpy instead of assignment in
pack and unpack.


===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.1	Fri Apr  4 23:33:54 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/Makearch.Origin2000,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1037	Fri Apr  4 23:33:54 1997
   Repository revision:	1.1037	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday April 4, 1997 @ 17:34
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv29177/src

Modified Files:
	BroadcastMgr.C BroadcastMgr.h CollectionMaster.C Compute.C 
	ComputeDPMTA.C ComputeHomeTuples.C ComputeMap.C 
	ComputeNonbondedUtil.C LJTable.C LJTable.h Namd.C 
	NamdOneTools.C Node.C Output.h PatchMap.C PatchMgr.C 
	PositionOwnerBox.C 
Log Message:
Got NAMD2 to run on Origin2000.
Included definitions of class static variables in C files.
Fixed alignment bugs by using memcpy instead of assignment in
pack and unpack.


===================================================================
File: no file BroadcastMgr.C		Status: Needs Checkout

   Working revision:	1.2	Fri Apr  4 23:34:11 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file BroadcastMgr.h		Status: Needs Checkout

   Working revision:	1.2	Fri Apr  4 23:34:12 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file CollectionMaster.C		Status: Needs Checkout

   Working revision:	1.1008	Fri Apr  4 23:34:13 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Compute.C		Status: Needs Checkout

   Working revision:	1.1008	Fri Apr  4 23:34:14 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeDPMTA.C		Status: Needs Checkout

   Working revision:	1.1043	Fri Apr  4 23:34:15 1997
   Repository revision:	1.1043	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: no file ComputeHomeTuples.C		Status: Needs Checkout

   Working revision:	1.1010	Fri Apr  4 23:34:16 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeMap.C		Status: Needs Checkout

   Working revision:	1.1011	Fri Apr  4 23:34:17 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeNonbondedUtil.C		Status: Needs Checkout

   Working revision:	1.1007	Fri Apr  4 23:34:18 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file LJTable.C		Status: Needs Checkout

   Working revision:	1.1004	Fri Apr  4 23:34:19 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/LJTable.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file LJTable.h		Status: Needs Checkout

   Working revision:	1.1001	Fri Apr  4 23:34:19 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/LJTable.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Namd.C		Status: Needs Checkout

   Working revision:	1.1005	Fri Apr  4 23:34:20 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Namd.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file NamdOneTools.C		Status: Needs Checkout

   Working revision:	1.5	Fri Apr  4 23:34:21 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file Node.C		Status: Needs Checkout

   Working revision:	1.1014	Fri Apr  4 23:34:22 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Output.h		Status: Needs Checkout

   Working revision:	1.4	Fri Apr  4 23:34:23 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/Output.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: no file PatchMap.C		Status: Needs Checkout

   Working revision:	1.1009	Fri Apr  4 23:34:24 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file PatchMgr.C		Status: Needs Checkout

   Working revision:	1.1006	Fri Apr  4 23:34:25 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file PositionOwnerBox.C		Status: Needs Checkout

   Working revision:	1.1003	Fri Apr  4 23:34:25 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)


****************************************
Date:	Friday April 4, 1997 @ 17:34
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory hamlet:/tmp/cvs-serv29177/src/Templates

Modified Files:
	ResizeArray.C ResizeArray.h UniqueSetRaw.C UniqueSetRaw.h 
Log Message:
Got NAMD2 to run on Origin2000.
Included definitions of class static variables in C files.
Fixed alignment bugs by using memcpy instead of assignment in
pack and unpack.


===================================================================
File: no file ResizeArray.C		Status: Needs Checkout

   Working revision:	1.1005	Fri Apr  4 23:34:29 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ResizeArray.h		Status: Needs Checkout

   Working revision:	1.1004	Fri Apr  4 23:34:30 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file UniqueSetRaw.C		Status: Needs Checkout

   Working revision:	1.3	Fri Apr  4 23:34:30 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetRaw.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file UniqueSetRaw.h		Status: Needs Checkout

   Working revision:	1.4	Fri Apr  4 23:34:31 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetRaw.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday April 4, 1997 @ 22:53
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	LdbCoordinator.C LdbCoordinator.h 
Added Files:
	Rebalancer.C Rebalancer.h RefineOnly.C RefineOnly.h Set.C 
	Set.h elements.h heap.C heap.h 
Log Message:
Rebalancer code linked in.  It is called, but the results are not currently
used.


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.1	Fri Apr  4 23:40:03 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Rebalancer.h     	Status: Up-to-date

   Working revision:	1.1	Fri Apr  4 23:40:30 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Rebalancer.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: RefineOnly.C     	Status: Up-to-date

   Working revision:	1.1	Fri Apr  4 21:38:14 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/RefineOnly.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: RefineOnly.h     	Status: Up-to-date

   Working revision:	1.1	Fri Apr  4 22:52:11 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/RefineOnly.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Set.C            	Status: Up-to-date

   Working revision:	1.1	Fri Apr  4 20:55:18 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Set.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Set.h            	Status: Up-to-date

   Working revision:	1.1	Fri Apr  4 20:55:18 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Set.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: elements.h       	Status: Up-to-date

   Working revision:	1.1	Fri Apr  4 20:54:31 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/elements.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: heap.C           	Status: Up-to-date

   Working revision:	1.1	Fri Apr  4 23:19:08 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/heap.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: heap.h           	Status: Up-to-date

   Working revision:	1.1	Fri Apr  4 23:19:26 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/heap.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.6	Sat Apr  5 00:16:09 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.5	Sat Apr  5 04:53:11 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday April 4, 1997 @ 22:54
Author:	brunner

Update of /Projects/l3/cvsroot/namd2
In directory hamlet:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2

Modified Files:
	Makefile 
Log Message:
Added Rebalancer and associated files



===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1038	Sat Apr  5 00:06:49 1997
   Repository revision:	1.1038	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday April 6, 1997 @ 17:45
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l3/ari/namd2/namd2/src

Modified Files:
	CollectionMaster.h CollectionMgr.C Compute.C 
	ComputeFullDirect.C ComputeHomeTuples.C ComputeNonbondedExcl.C 
	ComputeNonbondedPair.C ComputeNonbondedSelf.C 
	ComputeNonbondedSelf.h HomePatch.C LdbCoordinator.C 
	NamdOneTools.C Node.C Patch.C PatchMap.C PositionOwnerBox.C 
	Priorities.h ProxyMgr.h ProxyPatch.C ReductionMgr.C 
	WorkDistrib.C 
Added Files:
	Priorities.C 
Log Message:
Add priorities to messages.  Mods to help proxies without computes.
Added quick enhancement to end of list insertion of ResizeArray(s)


===================================================================
File: Priorities.C     	Status: Up-to-date

   Working revision:	1.1	Sat Apr  5 09:13:51 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Priorities.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1006	Sun Apr  6 22:44:55 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1002	Sun Apr  6 22:44:56 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1009	Sun Apr  6 22:44:57 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1012	Sun Apr  6 22:44:58 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1011	Sun Apr  6 22:44:58 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1012	Sun Apr  6 22:44:59 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1010	Sun Apr  6 22:45:00 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1007	Sun Apr  6 22:45:02 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.1004	Sun Apr  6 22:45:03 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1026	Sun Apr  6 22:45:04 1997
   Repository revision:	1.1026	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.7	Sun Apr  6 03:01:37 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.6	Sun Apr  6 22:45:06 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1015	Sun Apr  6 22:45:06 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1010	Sun Apr  6 22:45:07 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1010	Sun Apr  6 22:45:08 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PositionOwnerBox.C	Status: Up-to-date

   Working revision:	1.1004	Sun Apr  6 22:45:09 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: Priorities.h     	Status: Up-to-date

   Working revision:	1.2	Sun Apr  6 22:45:11 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Priorities.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1006	Sun Apr  6 22:45:11 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1010	Sun Apr  6 22:45:12 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1014	Sun Apr  6 22:45:13 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1020	Sun Apr  6 22:45:14 1997
   Repository revision:	1.1020	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday April 6, 1997 @ 17:45
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory caliban:/tmp_mnt/Projects/l3/ari/namd2/namd2/src/Templates

Modified Files:
	ResizeArrayRaw.h 
Log Message:
Added quick enhancement to end of list insertion of ResizeArray(s)


===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.4	Sun Apr  6 22:45:28 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayRaw.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday April 6, 1997 @ 17:46
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l3/ari/namd2/namd2

Modified Files:
	Makefile 
Log Message:
Added Priorities.C to set a static variable numBits


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1039	Sun Apr  6 00:35:35 1997
   Repository revision:	1.1039	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday April 6, 1997 @ 19:04
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	LdbCoordinator.C LdbCoordinator.h Rebalancer.C RefineOnly.C 
Added Files:
	Alg7.h AlgSeven.C 
Log Message:
LDB Alg7 added and computeMap modified on node 0



===================================================================
File: Alg7.h           	Status: Up-to-date

   Working revision:	1.1	Sun Apr  6 22:34:51 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Alg7.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.1	Sun Apr  6 22:51:29 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.8	Sun Apr  6 23:40:53 1997
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.6	Mon Apr  7 00:04:07 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.2	Sun Apr  6 22:10:20 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: RefineOnly.C     	Status: Up-to-date

   Working revision:	1.2	Sun Apr  6 22:06:03 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/RefineOnly.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday April 6, 1997 @ 19:05
Author:	brunner

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2

Modified Files:
	Makefile 
Log Message:
Added AlgSeven.C (Alg7.C file name does not work, due to number).


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1040	Sun Apr  6 23:39:21 1997
   Repository revision:	1.1040	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 7, 1997 @ 9:54
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ConfigList.C Molecule.C NamdOneTools.C PDB.C Parameters.C 
	ReductionMgr.C Set.C Set.h WorkDistrib.C common.C common.h 
Log Message:
Changed fclose() to Fclose() (found in common.[Ch]) to use with popen().
Also corrected compilation warnings in Set.[Ch].


===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1003	Mon Apr  7 14:54:28 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1013	Mon Apr  7 14:54:29 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.7	Mon Apr  7 14:54:30 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1003	Mon Apr  7 14:54:32 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1004	Mon Apr  7 14:54:33 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1015	Mon Apr  7 14:54:35 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Set.C            	Status: Up-to-date

   Working revision:	1.2	Mon Apr  7 14:52:22 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Set.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Set.h            	Status: Up-to-date

   Working revision:	1.2	Mon Apr  7 14:52:52 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Set.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1021	Mon Apr  7 14:54:37 1997
   Repository revision:	1.1021	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1007	Mon Apr  7 14:54:39 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/common.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1006	Mon Apr  7 14:54:39 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 7, 1997 @ 10:21
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpme2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpme2

Removed Files:
	DPME2.tar.Z bspline2.c cfftb.c cfftb1.c cfftf.c cfftf1.c 
	cffti.c cffti1.c charge_grid2.c dpme2.h dpme2_paralibs.c 
	dpme2_pvm.h dpme2_recip_sum.c dpme2_test.c dpme2_utility.c 
	dpme2def.h erfcfun.c f2c.h fftcalls.c passb.c passb2.c 
	passb3.c passb4.c passb5.c passf.c passf2.c passf3.c passf4.c 
	passf5.c pmesh_kspace2.c protype.h pub3dfft.c sample_run 
	small2.pdb 
Log Message:
Remove old DPME code to make room for new DPME library!


===================================================================
File: no file DPME2.tar.Z		Status: Needs Checkout

   Working revision:	No entry for DPME2.tar.Z
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/DPME2.tar.Z,v

===================================================================
File: no file bspline2.c		Status: Needs Checkout

   Working revision:	No entry for bspline2.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/bspline2.c,v

===================================================================
File: no file cfftb.c		Status: Needs Checkout

   Working revision:	No entry for cfftb.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/cfftb.c,v

===================================================================
File: no file cfftb1.c		Status: Needs Checkout

   Working revision:	No entry for cfftb1.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/cfftb1.c,v

===================================================================
File: no file cfftf.c		Status: Needs Checkout

   Working revision:	No entry for cfftf.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/cfftf.c,v

===================================================================
File: no file cfftf1.c		Status: Needs Checkout

   Working revision:	No entry for cfftf1.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/cfftf1.c,v

===================================================================
File: no file cffti.c		Status: Needs Checkout

   Working revision:	No entry for cffti.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/cffti.c,v

===================================================================
File: no file cffti1.c		Status: Needs Checkout

   Working revision:	No entry for cffti1.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/cffti1.c,v

===================================================================
File: no file charge_grid2.c		Status: Needs Checkout

   Working revision:	No entry for charge_grid2.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/charge_grid2.c,v

===================================================================
File: no file dpme2.h		Status: Needs Checkout

   Working revision:	No entry for dpme2.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/dpme2.h,v

===================================================================
File: no file dpme2_paralibs.c		Status: Needs Checkout

   Working revision:	No entry for dpme2_paralibs.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/dpme2_paralibs.c,v

===================================================================
File: no file dpme2_pvm.h		Status: Needs Checkout

   Working revision:	No entry for dpme2_pvm.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/dpme2_pvm.h,v

===================================================================
File: no file dpme2_recip_sum.c		Status: Needs Checkout

   Working revision:	No entry for dpme2_recip_sum.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/dpme2_recip_sum.c,v

===================================================================
File: no file dpme2_test.c		Status: Needs Checkout

   Working revision:	No entry for dpme2_test.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/dpme2_test.c,v

===================================================================
File: no file dpme2_utility.c		Status: Needs Checkout

   Working revision:	No entry for dpme2_utility.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/dpme2_utility.c,v

===================================================================
File: no file dpme2def.h		Status: Needs Checkout

   Working revision:	No entry for dpme2def.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/dpme2def.h,v

===================================================================
File: no file erfcfun.c		Status: Needs Checkout

   Working revision:	No entry for erfcfun.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/erfcfun.c,v

===================================================================
File: no file f2c.h		Status: Needs Checkout

   Working revision:	No entry for f2c.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/f2c.h,v

===================================================================
File: no file fftcalls.c		Status: Needs Checkout

   Working revision:	No entry for fftcalls.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/fftcalls.c,v

===================================================================
File: no file passb.c		Status: Needs Checkout

   Working revision:	No entry for passb.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/passb.c,v

===================================================================
File: no file passb2.c		Status: Needs Checkout

   Working revision:	No entry for passb2.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/passb2.c,v

===================================================================
File: no file passb3.c		Status: Needs Checkout

   Working revision:	No entry for passb3.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/passb3.c,v

===================================================================
File: no file passb4.c		Status: Needs Checkout

   Working revision:	No entry for passb4.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/passb4.c,v

===================================================================
File: no file passb5.c		Status: Needs Checkout

   Working revision:	No entry for passb5.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/passb5.c,v

===================================================================
File: no file passf.c		Status: Needs Checkout

   Working revision:	No entry for passf.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/passf.c,v

===================================================================
File: no file passf2.c		Status: Needs Checkout

   Working revision:	No entry for passf2.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/passf2.c,v

===================================================================
File: no file passf3.c		Status: Needs Checkout

   Working revision:	No entry for passf3.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/passf3.c,v

===================================================================
File: no file passf4.c		Status: Needs Checkout

   Working revision:	No entry for passf4.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/passf4.c,v

===================================================================
File: no file passf5.c		Status: Needs Checkout

   Working revision:	No entry for passf5.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/passf5.c,v

===================================================================
File: no file pmesh_kspace2.c		Status: Needs Checkout

   Working revision:	No entry for pmesh_kspace2.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/pmesh_kspace2.c,v

===================================================================
File: no file protype.h		Status: Needs Checkout

   Working revision:	No entry for protype.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/protype.h,v

===================================================================
File: no file pub3dfft.c		Status: Needs Checkout

   Working revision:	No entry for pub3dfft.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/pub3dfft.c,v

===================================================================
File: no file sample_run		Status: Needs Checkout

   Working revision:	No entry for sample_run
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/sample_run,v

===================================================================
File: no file small2.pdb		Status: Needs Checkout

   Working revision:	No entry for small2.pdb
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Attic/small2.pdb,v


****************************************
Date:	Monday April 7, 1997 @ 16:09
Author:	brunner

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2

Modified Files:
	Makefile 
Log Message:
Added RecBisection for initial patch distrib


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1041	Mon Apr  7 20:42:12 1997
   Repository revision:	1.1041	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 7, 1997 @ 16:10
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	Rebalancer.C WorkDistrib.C WorkDistrib.h 
Added Files:
	RecBisection.C RecBisection.h 
Log Message:
Added RecBisection for initial patch distrib


===================================================================
File: RecBisection.C   	Status: Up-to-date

   Working revision:	1.1	Mon Apr  7 21:09:56 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/RecBisection.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: RecBisection.h   	Status: Up-to-date

   Working revision:	1.1	Mon Apr  7 21:09:57 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/RecBisection.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 20:13:33 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1022	Mon Apr  7 21:09:58 1997
   Repository revision:	1.1022	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1008	Mon Apr  7 21:09:59 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 7, 1997 @ 16:34
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	Rebalancer.C WorkDistrib.C 
Log Message:
Added some information printout about atom distribution.


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.4	Mon Apr  7 21:24:18 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1023	Mon Apr  7 21:34:26 1997
   Repository revision:	1.1023	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 7, 1997 @ 17:23
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	RecBisection.C WorkDistrib.C 
Log Message:
Changed RB constants so patch distrib equalizes number of atoms, and
added weights for initial compute distrib based on self, face neighbor,
edge neighbor, or corner neighbor.


===================================================================
File: RecBisection.C   	Status: Up-to-date

   Working revision:	1.2	Mon Apr  7 22:23:30 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/RecBisection.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1024	Mon Apr  7 22:23:31 1997
   Repository revision:	1.1024	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 8, 1997 @ 2:06
Author:	ari

Update of /Projects/l3/cvsroot/namd2
In directory caliban:/tmp_mnt/Projects/l3/ari/namd2/namd2

Modified Files:
	Makearch.HPUX9 
Log Message:



===================================================================
File: Makearch.HPUX9   	Status: Up-to-date

   Working revision:	1.3	Tue Apr  8 07:05:12 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/Makearch.HPUX9,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday April 8, 1997 @ 2:09
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l3/ari/namd2/namd2/src

Modified Files:
	CollectionMgr.C Compute.C Compute.h ComputeMap.C ComputeMap.h 
	ComputeMgr.C ComputeMgr.ci ComputeMgr.h ComputeNonbondedPair.C 
	ComputeNonbondedPair.h ComputeNonbondedSelf.C 
	ComputeNonbondedUtil.h ComputePatch.C ComputePatchPair.C 
	HomePatch.C LdbCoordinator.C LdbCoordinator.ci 
	LdbCoordinator.h Patch.C ProxyMgr.C ProxyMgr.h ProxyPatch.C 
	ReductionMgr.C Sequencer.C WorkDistrib.C WorkDistrib.ci 
	WorkDistrib.h 
Log Message:
Modification for dynamic loadbalancing - moving computes
Still bug in new computes or usage of proxies/homepatches.
Works if ldbStrategy is none as before.


===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1003	Tue Apr  8 07:08:07 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1010	Tue Apr  8 07:08:08 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1005	Tue Apr  8 07:08:10 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1012	Tue Apr  8 07:08:12 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1006	Tue Apr  8 07:08:14 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1011	Tue Apr  8 07:08:16 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.ci    	Status: Up-to-date

   Working revision:	1.1002	Tue Apr  8 07:08:18 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeMgr.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1006	Tue Apr  8 07:08:20 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1011	Tue Apr  8 07:08:21 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1006	Tue Apr  8 07:08:23 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1008	Tue Apr  8 07:08:25 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1007	Tue Apr  8 07:08:27 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1006	Tue Apr  8 07:08:30 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1009	Tue Apr  8 07:08:32 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1027	Tue Apr  8 07:08:35 1997
   Repository revision:	1.1027	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.9	Tue Apr  8 05:15:21 1997
   Repository revision:	1.9	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.ci	Status: Up-to-date

   Working revision:	1.2	Tue Apr  8 07:08:43 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.ci,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.7	Tue Apr  8 07:08:47 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1011	Tue Apr  8 07:08:49 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1013	Tue Apr  8 07:08:55 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1007	Tue Apr  8 07:08:57 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1011	Tue Apr  8 07:08:58 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1016	Tue Apr  8 07:08:59 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1028	Tue Apr  8 07:09:01 1997
   Repository revision:	1.1028	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1025	Tue Apr  8 07:09:02 1997
   Repository revision:	1.1025	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1004	Tue Apr  8 07:09:04 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1009	Tue Apr  8 07:09:05 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 8, 1997 @ 2:10
Author:	ari

Update of /Projects/l3/cvsroot/namd2/test
In directory caliban:/tmp_mnt/Projects/l3/ari/namd2/namd2/test

Modified Files:
	brH 
Log Message:


===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1015	Tue Apr  8 05:31:01 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Tuesday April 8, 1997 @ 9:21
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Modified Files:
	Makearch.HPUX9 
Log Message:
Making makefile consistant.


===================================================================
File: Makearch.HPUX9   	Status: Up-to-date

   Working revision:	1.4	Tue Apr  8 14:21:12 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/Makearch.HPUX9,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday April 8, 1997 @ 12:11
Author:	nealk

Update of /Projects/l3/cvsroot/namd2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2

Modified Files:
	Makefile 
Log Message:
Make clean now cleans the PVM directory.
(Who removed it!)


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1042	Tue Apr  8 17:10:23 1997
   Repository revision:	1.1042	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 8, 1997 @ 13:46
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Set.C Set.h 
Log Message:
Set::print() -> void Set::print()


===================================================================
File: Set.C            	Status: Up-to-date

   Working revision:	1.3	Tue Apr  8 17:11:51 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Set.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Set.h            	Status: Up-to-date

   Working revision:	1.3	Tue Apr  8 17:01:53 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Set.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday April 8, 1997 @ 16:08
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Controller.C Patch.C Patch.h PatchTypes.h Sequencer.C 
	SimParameters.C SimParameters.h 
Log Message:
Contant pressure now correct on multiple nodes, should work with MTS.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1015	Tue Apr  8 21:08:40 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1012	Tue Apr  8 21:08:41 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1008	Tue Apr  8 21:08:43 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.7	Tue Apr  8 21:08:45 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1029	Tue Apr  8 21:08:47 1997
   Repository revision:	1.1029	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1012	Tue Apr  8 21:08:49 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1009	Tue Apr  8 21:08:51 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 8, 1997 @ 18:00
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	LdbCoordinator.C LdbCoordinator.h 
Log Message:
Fixed problem with numComputes not equal to number of moveable computes


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.10	Tue Apr  8 22:40:37 1997
   Repository revision:	1.10	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.8	Tue Apr  8 23:00:01 1997
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday April 9, 1997 @ 10:40
Author:	jim

Update of /Projects/l3/cvsroot/namd2/test
In directory paris:/private/auto194000143/namd.2.0/Programmers/jim/namd2/test

Modified Files:
	watercube.xplor 
Log Message:
increased initial temperature


===================================================================
File: watercube.xplor  	Status: Up-to-date

   Working revision:	1.2	Wed Apr  9 15:39:37 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/test/watercube.xplor,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday April 9, 1997 @ 11:15
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedHack.h 
Log Message:
Fixed ABR error in purify.


===================================================================
File: ComputeNonbondedHack.h	Status: Up-to-date

   Working revision:	1.1004	Wed Apr  9 16:15:30 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedHack.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 9, 1997 @ 12:51
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/efence
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/efence

Log Message:
Directory /Projects/l3/cvsroot/namd2/efence added to the repository


[input file was '-']

****************************************
Date:	Wednesday April 9, 1997 @ 12:53
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/efence
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/efence

Added Files:
	CHANGES COPYING ElectricFence-2.0.5 HPUX.Install Makefile 
	README README.HPPD README.pen efence.c efence.c.cln efence.h 
	eftest.c libefence.3 page.c print.c tstheap.c 
Log Message:
Adding Electric Fence (malloc debugging code).


===================================================================
File: CHANGES          	Status: Up-to-date

   Working revision:	1.1	Fri Jan 20 05:29:55 1995
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/CHANGES,v

   Existing Tags:
	No Tags Exist

===================================================================
File: COPYING          	Status: Up-to-date

   Working revision:	1.1	Fri Jan 20 05:21:35 1995
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/COPYING,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ElectricFence-2.0.5	Status: Up-to-date

   Working revision:	1.1	Wed Apr  9 17:51:05 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/ElectricFence-2.0.5,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX.Install     	Status: Up-to-date

   Working revision:	1.1	Fri Jul  5 14:09:12 1996
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/HPUX.Install,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1	Fri Jul  5 13:59:10 1996
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: README           	Status: Up-to-date

   Working revision:	1.1	Fri Jan 20 05:23:45 1995
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/README,v

   Existing Tags:
	No Tags Exist

===================================================================
File: README.HPPD      	Status: Up-to-date

   Working revision:	1.1	Fri Jul  5 14:15:33 1996
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/README.HPPD,v

   Existing Tags:
	No Tags Exist

===================================================================
File: README.pen       	Status: Up-to-date

   Working revision:	1.1	Wed Apr 19 10:05:43 1995
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/README.pen,v

   Existing Tags:
	No Tags Exist

===================================================================
File: efence.c         	Status: Up-to-date

   Working revision:	1.1	Fri Jul  5 14:10:38 1996
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/efence.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: efence.c.cln     	Status: Up-to-date

   Working revision:	1.1	Mon Apr 10 23:26:39 1995
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/efence.c.cln,v

   Existing Tags:
	No Tags Exist

===================================================================
File: efence.h         	Status: Up-to-date

   Working revision:	1.1	Fri Jan 20 04:54:06 1995
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/efence.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: eftest.c         	Status: Up-to-date

   Working revision:	1.1	Fri Jan 20 04:54:30 1995
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/eftest.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: libefence.3      	Status: Up-to-date

   Working revision:	1.1	Fri Jan 20 05:28:59 1995
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/libefence.3,v

   Existing Tags:
	No Tags Exist

===================================================================
File: page.c           	Status: Up-to-date

   Working revision:	1.1	Fri Jan 20 05:01:06 1995
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/page.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: print.c          	Status: Up-to-date

   Working revision:	1.1	Fri Jan 20 04:54:26 1995
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/print.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: tstheap.c        	Status: Up-to-date

   Working revision:	1.1	Fri Jan 20 04:54:32 1995
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/efence/tstheap.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday April 10, 1997 @ 4:14
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src
In directory caliban:/tmp_mnt/Projects/l3/ari/namd2/namd2/src

Modified Files:
	AlgSeven.C AtomMap.C AtomMap.h Compute.C Compute.h 
	ComputeMap.C ComputeMap.h ComputeMgr.C ComputeMgr.ci 
	ComputeMgr.h ComputeNonbondedPair.C ComputePatch.C 
	ComputePatchPair.C Controller.C HomePatch.C InfoStream.h 
	LdbCoordinator.C LdbCoordinator.h Patch.C PatchMap.C 
	PatchMap.h PatchMgr.C PatchTypes.h PositionBox.C PositionBox.h 
	PositionOwnerBox.C PositionOwnerBox.h ProxyMgr.C ProxyPatch.C 
	Rebalancer.C RefineOnly.C Sequencer.C Set.C WorkDistrib.C 
Log Message:
Final debugging for compute migration / proxy creation for load balancing.
Lots of debug code added, mostly turned off now.
Fixed bug in PositionBox when Patch had no dependencies.
Eliminated use of cout and misuse of iout in numerous places.
                                           Ari & Jim


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.2	Thu Apr 10 06:28:36 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1007	Thu Apr 10 09:13:46 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/AtomMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: AtomMap.h        	Status: Up-to-date

   Working revision:	1.1004	Thu Apr 10 09:13:47 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/AtomMap.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1011	Thu Apr 10 09:13:47 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1006	Thu Apr 10 09:13:48 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1013	Thu Apr 10 09:13:49 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1007	Thu Apr 10 09:13:50 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1012	Thu Apr 10 09:13:51 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.ci    	Status: Up-to-date

   Working revision:	1.1003	Thu Apr 10 09:13:52 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeMgr.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1007	Thu Apr 10 09:13:52 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1012	Thu Apr 10 09:13:53 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1007	Thu Apr 10 09:13:54 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1010	Thu Apr 10 09:13:55 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1016	Thu Apr 10 09:13:56 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1028	Thu Apr 10 09:13:57 1997
   Repository revision:	1.1028	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1002	Thu Apr 10 09:13:58 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/InfoStream.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.11	Tue Apr  8 23:00:30 1997
   Repository revision:	1.11	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.9	Thu Apr 10 09:14:00 1997
   Repository revision:	1.9	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1013	Thu Apr 10 09:14:00 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1011	Thu Apr 10 09:14:01 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1005	Thu Apr 10 09:14:02 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1007	Thu Apr 10 09:14:03 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.8	Thu Apr 10 09:14:05 1997
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PositionBox.C    	Status: Up-to-date

   Working revision:	1.1002	Thu Apr 10 09:14:06 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/PositionBox.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionBox.h    	Status: Up-to-date

   Working revision:	1.1002	Thu Apr 10 09:14:07 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/PositionBox.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionOwnerBox.C	Status: Up-to-date

   Working revision:	1.1005	Thu Apr 10 09:14:08 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: PositionOwnerBox.h	Status: Up-to-date

   Working revision:	1.1003	Thu Apr 10 09:14:08 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.h,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1014	Thu Apr 10 09:14:09 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1012	Thu Apr 10 09:14:10 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.5	Thu Apr 10 06:36:58 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: RefineOnly.C     	Status: Up-to-date

   Working revision:	1.3	Thu Apr 10 06:51:53 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/RefineOnly.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1030	Thu Apr 10 09:14:12 1997
   Repository revision:	1.1030	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Set.C            	Status: Up-to-date

   Working revision:	1.4	Thu Apr 10 08:17:41 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/Set.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1026	Thu Apr 10 09:14:14 1997
   Repository revision:	1.1026	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 10, 1997 @ 4:14
Author:	ari

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory caliban:/tmp_mnt/Projects/l3/ari/namd2/namd2/src/Templates

Modified Files:
	Box.C 
Log Message:
Debug code added and commented out.


===================================================================
File: Box.C            	Status: Up-to-date

   Working revision:	1.1001	Wed Apr  9 20:42:44 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/Box.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)
	development-0            	(revision: 1.1)


****************************************
Date:	Thursday April 10, 1997 @ 9:38
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l3/ari/namd2/namd2/src

Added Files:
	Thread.h 
Log Message:
Defines for size of thread stack


===================================================================
File: Thread.h         	Status: Up-to-date

   Working revision:	1.1	Wed Apr  9 15:44:55 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Thread.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday April 10, 1997 @ 9:44
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv20565

Modified Files:
	WorkDistrib.C 
Log Message:
Changed weights.


===================================================================
File: no file WorkDistrib.C		Status: Needs Checkout

   Working revision:	1.1027	Thu Apr 10 14:44:52 1997
   Repository revision:	1.1027	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 10, 1997 @ 10:49
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	LdbCoordinator.C WorkDistrib.C 
Log Message:
Added patch array dimension output and RefineOnly load balancer


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.12	Thu Apr 10 15:29:33 1997
   Repository revision:	1.12	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1028	Thu Apr 10 15:49:44 1997
   Repository revision:	1.1028	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 10, 1997 @ 11:58
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	LdbCoordinator.C Output.C Rebalancer.C 
Log Message:
Added and removed some prints



===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.13	Thu Apr 10 16:03:17 1997
   Repository revision:	1.13	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.5	Thu Apr 10 16:58:14 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.6	Thu Apr 10 16:50:22 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday April 10, 1997 @ 12:28
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	Controller.C Output.C 
Log Message:
Made time output in energy actually work.  The one in output doesn't do
anything.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1017	Thu Apr 10 17:28:43 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.6	Thu Apr 10 17:28:45 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday April 10, 1997 @ 13:44
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	Controller.C common.C 
Log Message:
1. changed endl to endi on Controller.C
2. identified popen() bug under HP-UX 9.  popen() occasionally (1/3 of the
time) includes garbage characters at the head of the stream, and may
close the stream prematurely.  I corrected the garbage bug.  Still need
to correct for the closing bug.  Ugh.



===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1018	Thu Apr 10 18:44:33 1997
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1008	Thu Apr 10 18:44:34 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/common.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 10, 1997 @ 17:29
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Controller.C HomePatch.C MigrateAtomsMsg.C MigrateAtomsMsg.h 
	PatchMgr.C PatchMgr.h 
Log Message:
First steps towards combining atom migration messages.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1019	Thu Apr 10 22:29:09 1997
   Repository revision:	1.1019	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1029	Thu Apr 10 22:29:11 1997
   Repository revision:	1.1029	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MigrateAtomsMsg.C	Status: Up-to-date

   Working revision:	1.4	Thu Apr 10 22:29:12 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/MigrateAtomsMsg.C,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: MigrateAtomsMsg.h	Status: Up-to-date

   Working revision:	1.5	Thu Apr 10 22:29:14 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/MigrateAtomsMsg.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1008	Thu Apr 10 22:29:16 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1005	Thu Apr 10 22:29:17 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday April 11, 1997 @ 1:03
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	MigrateAtomsMsg.C MigrateAtomsMsg.h PatchMgr.C PatchMgr.ci 
	PatchMgr.h 
Log Message:
Message combining implemented for atom migration.


===================================================================
File: MigrateAtomsMsg.C	Status: Up-to-date

   Working revision:	1.5	Fri Apr 11 06:03:22 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/MigrateAtomsMsg.C,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: MigrateAtomsMsg.h	Status: Up-to-date

   Working revision:	1.6	Fri Apr 11 06:03:24 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/MigrateAtomsMsg.h,v

   Existing Tags:
	development-3            	(revision: 1.1)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1009	Fri Apr 11 06:03:26 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.ci      	Status: Up-to-date

   Working revision:	1.1004	Fri Apr 11 06:03:27 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/PatchMgr.ci,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1006	Fri Apr 11 06:03:29 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday April 11, 1997 @ 11:54
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	MigrateAtomsMsg.C 
Log Message:
Fixed bug calling size() on possibly null pointer.


===================================================================
File: MigrateAtomsMsg.C	Status: Up-to-date

   Working revision:	1.6	Fri Apr 11 16:54:28 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/MigrateAtomsMsg.C,v

   Existing Tags:
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday April 16, 1997 @ 17:12
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	Controller.C LdbCoordinator.C LdbCoordinator.h Rebalancer.C 
	RefineOnly.C Sequencer.C SimParameters.C WorkDistrib.C 
Log Message:
Fixed an LdbCoordinator bug, and cleaned up timing and Ldb output some.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1020	Wed Apr 16 22:12:16 1997
   Repository revision:	1.1020	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.14	Wed Apr 16 21:56:34 1997
   Repository revision:	1.14	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.10	Wed Apr 16 22:12:17 1997
   Repository revision:	1.10	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.7	Wed Apr 16 22:06:25 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: RefineOnly.C     	Status: Up-to-date

   Working revision:	1.4	Wed Apr 16 22:04:17 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/RefineOnly.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1031	Wed Apr 16 22:12:20 1997
   Repository revision:	1.1031	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1013	Wed Apr 16 22:12:20 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1029	Wed Apr 16 22:12:22 1997
   Repository revision:	1.1029	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 16, 1997 @ 18:44
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	LdbCoordinator.C LdbCoordinator.h SimParameters.C 
	SimParameters.h 
Log Message:
Put ldbStrategy={none|refineonly|alg7}, ldbPeriod, and firstLdbStep
in SimParameters.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.15	Wed Apr 16 23:02:19 1997
   Repository revision:	1.15	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.11	Wed Apr 16 23:44:03 1997
   Repository revision:	1.11	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1014	Wed Apr 16 23:44:04 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1010	Wed Apr 16 23:44:05 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 17, 1997 @ 14:19
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	AlgSeven.C ComputeMgr.h LdbCoordinator.C Rebalancer.C 
	Rebalancer.h Set.C Set.h elements.h heap.C heap.h 
Log Message:
Put in new AlgSeven.C



===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.3	Thu Apr 17 19:00:10 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1008	Thu Apr 17 19:19:36 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.16	Thu Apr 17 19:08:38 1997
   Repository revision:	1.16	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.8	Thu Apr 17 18:41:56 1997
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Rebalancer.h     	Status: Up-to-date

   Working revision:	1.2	Thu Apr 17 18:30:45 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Rebalancer.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Set.C            	Status: Up-to-date

   Working revision:	1.5	Thu Apr 17 18:33:48 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/Set.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Set.h            	Status: Up-to-date

   Working revision:	1.4	Thu Apr 17 18:34:01 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/Set.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: elements.h       	Status: Up-to-date

   Working revision:	1.2	Thu Apr 17 17:45:26 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/elements.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: heap.C           	Status: Up-to-date

   Working revision:	1.2	Thu Apr 17 17:52:52 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/heap.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: heap.h           	Status: Up-to-date

   Working revision:	1.2	Thu Apr 17 18:01:02 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/heap.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday April 20, 1997 @ 19:18
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Controller.C 
Log Message:
Fixed slowing-down problem caused by failing to require ALT_VIRIAL from
reduction system in controller when not printing energies.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1021	Mon Apr 21 00:18:53 1997
   Repository revision:	1.1021	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday April 20, 1997 @ 19:58
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
Fixed hang on patch migration in systems with only one patch.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1030	Mon Apr 21 00:58:33 1997
   Repository revision:	1.1030	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 21, 1997 @ 23:17
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2

Modified Files:
	Makefile 
Log Message:
Added ComputeRestraints.o (harmonic restraints)


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1043	Tue Apr 22 04:16:47 1997
   Repository revision:	1.1043	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 21, 1997 @ 23:26
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeMap.h ComputeMgr.C WorkDistrib.C 
Added Files:
	ComputeRestraints.C ComputeRestraints.h 
Log Message:
Added atomic restraints (harmonic constraints) via ComputeRestraints class.


===================================================================
File: ComputeRestraints.C	Status: Up-to-date

   Working revision:	1.1	Tue Apr 22 04:25:59 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ComputeRestraints.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeRestraints.h	Status: Up-to-date

   Working revision:	1.1	Tue Apr 22 04:26:01 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ComputeRestraints.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1008	Tue Apr 22 04:25:56 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1013	Tue Apr 22 04:25:58 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1030	Tue Apr 22 04:26:03 1997
   Repository revision:	1.1030	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 22, 1997 @ 11:34
Author:	root

Update of /Projects/l3/cvsroot/text/zurich97
In directory polonius:/tmp_mnt/Projects/l3/ari/zurich97

Revision/Branch: 1.1.1

Log Message:
Imported Text

Status:

Vendor Tag:	text
Release Tags:	start
		
N text/zurich97/Makefile
N text/zurich97/NSF.sty
N text/zurich97/abbrv.bst
N text/zurich97/art10.sty
N text/zurich97/art11.sty
N text/zurich97/art12.sty
N text/zurich97/bio_edelsbrunner.tex
N text/zurich97/bio_huang.tex
N text/zurich97/bio_kale.tex
N text/zurich97/bio_morgan.tex
N text/zurich97/bio_schulten.tex
N text/zurich97/bio_sharma.tex
N text/zurich97/bio_skeel.tex
N text/zurich97/bio_zhao.tex
N text/zurich97/epsf.sty
N text/zurich97/graphic.sty
N text/zurich97/group.bib
N text/zurich97/picinpar.sty
N text/zurich97/prior_edelsbrunner.tex
N text/zurich97/prior_huang.tex
N text/zurich97/prior_kale.tex
N text/zurich97/prior_morgan.tex
N text/zurich97/prior_schulten.tex
N text/zurich97/prior_sharma.tex
N text/zurich97/prior_skeel.tex
N text/zurich97/prior_zhao.tex
N text/zurich97/prop_alpha.tex
N text/zurich97/prop_budgetjust.tex
N text/zurich97/prop_description.tex
N text/zurich97/prop_gesture.tex
N text/zurich97/prop_intro.tex
N text/zurich97/prop_mdscope.tex
N text/zurich97/prop_pending.tex
N text/zurich97/prop_speech.tex
N text/zurich97/prop_summary.tex
N text/zurich97/proposal.aux
N text/zurich97/proposal.bbl
N text/zurich97/proposal.bib
N text/zurich97/proposal.blg
N text/zurich97/proposal.dvi
N text/zurich97/proposal.lof
N text/zurich97/proposal.log
N text/zurich97/proposal.tex
N text/zurich97/proposal.toc
N text/zurich97/tbpub.bib
N text/zurich97/texput.log

No conflicts created by this import


[input file was '-']

****************************************
Date:	Wednesday April 23, 1997 @ 12:05
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpme2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpme2

Modified Files:
	Makefile Readme Readme.NAMD2 
Added Files:
	DPME2.tar.Z DPME2W.tar.Z bspline2.c cfftb.c cfftb1.c cfftf.c 
	cfftf1.c cffti.c cffti1.c charge_grid2.c dpme2.h 
	dpme2_paralibsW.c dpme2_pvm.h dpme2_recip_sumW.c dpme2_testW.c 
	dpme2_utilityW.c dpme2def.h erfcfun.c f2c.h fftcalls.c passb.c 
	passb2.c passb3.c passb4.c passb5.c passf.c passf2.c passf3.c 
	passf4.c passf5.c pmesh_kspace2.c protype.h pub3dfft.c 
	sample_run small2.pdb 
Log Message:
Adding new DPME library.



===================================================================
File: DPME2.tar.Z      	Status: Up-to-date

   Working revision:	1.3	Mon Mar  3 18:37:27 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/DPME2.tar.Z,v

   Existing Tags:
	No Tags Exist

===================================================================
File: DPME2W.tar.Z     	Status: Up-to-date

   Working revision:	1.1	Fri Apr  4 19:53:44 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/DPME2W.tar.Z,v

   Existing Tags:
	No Tags Exist

===================================================================
File: bspline2.c       	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:45 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/bspline2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: cfftb.c          	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:50 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/cfftb.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: cfftb1.c         	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:50 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/cfftb1.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: cfftf.c          	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:51 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/cfftf.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: cfftf1.c         	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:51 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/cfftf1.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: cffti.c          	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:51 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/cffti.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: cffti1.c         	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:51 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/cffti1.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: charge_grid2.c   	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:13:04 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/charge_grid2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2.h          	Status: Up-to-date

   Working revision:	1.3	Fri Apr  4 19:56:30 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/dpme2.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2_paralibsW.c	Status: Up-to-date

   Working revision:	1.1	Wed Apr 23 17:05:17 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/dpme2_paralibsW.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2_pvm.h      	Status: Up-to-date

   Working revision:	1.3	Thu Apr  3 19:16:08 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/dpme2_pvm.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2_recip_sumW.c	Status: Up-to-date

   Working revision:	1.1	Wed Apr 23 17:05:19 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/dpme2_recip_sumW.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2_testW.c    	Status: Up-to-date

   Working revision:	1.1	Wed Apr 23 17:05:20 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/dpme2_testW.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2_utilityW.c 	Status: Up-to-date

   Working revision:	1.1	Wed Apr 23 17:05:21 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpme2/dpme2_utilityW.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2def.h       	Status: Up-to-date

   Working revision:	1.3	Thu Apr  3 20:09:10 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/dpme2def.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: erfcfun.c        	Status: Up-to-date

   Working revision:	1.3	Thu Apr  3 19:16:12 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/erfcfun.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: f2c.h            	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:51 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/f2c.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftcalls.c       	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:46 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/fftcalls.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passb.c          	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:51 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/passb.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passb2.c         	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:51 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/passb2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passb3.c         	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:51 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/passb3.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passb4.c         	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:51 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/passb4.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passb5.c         	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:51 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/passb5.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passf.c          	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:51 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/passf.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passf2.c         	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:52 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/passf2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passf3.c         	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:52 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/passf3.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passf4.c         	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:52 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/passf4.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: passf5.c         	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:52 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/passf5.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pmesh_kspace2.c  	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:46 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/pmesh_kspace2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: protype.h        	Status: Up-to-date

   Working revision:	1.3	Wed Apr 23 17:05:35 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/protype.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pub3dfft.c       	Status: Up-to-date

   Working revision:	1.3	Mon Apr  7 15:01:52 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/pub3dfft.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: sample_run       	Status: Up-to-date

   Working revision:	1.3	Thu Apr  3 19:16:36 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/sample_run,v

   Existing Tags:
	No Tags Exist

===================================================================
File: small2.pdb       	Status: Up-to-date

   Working revision:	1.3	Thu Apr  3 19:16:36 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpme2/small2.pdb,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.4	Wed Apr 23 16:11:49 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Readme           	Status: Up-to-date

   Working revision:	1.2	Thu Apr  3 19:16:36 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Readme,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Readme.NAMD2     	Status: Up-to-date

   Working revision:	1.2	Mon Apr  7 14:57:31 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/Readme.NAMD2,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday April 23, 1997 @ 13:15
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/dpme2
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/dpme2

Modified Files:
	Makefile cfftb1.c charge_grid2.c dpme2_paralibsW.c dpme2_pvm.h 
	dpme2_recip_sumW.c dpme2_utilityW.c fftcalls.c pmesh_kspace2.c 
	pub3dfft.c 
Log Message:
Modified to use CC instead of gcc.  Removed all warnings.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.5	Wed Apr 23 17:30:36 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: cfftb1.c         	Status: Up-to-date

   Working revision:	1.4	Wed Apr 23 17:38:55 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpme2/cfftb1.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: charge_grid2.c   	Status: Up-to-date

   Working revision:	1.4	Wed Apr 23 17:33:33 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpme2/charge_grid2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2_paralibsW.c	Status: Up-to-date

   Working revision:	1.2	Wed Apr 23 18:15:16 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/dpme2_paralibsW.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2_pvm.h      	Status: Up-to-date

   Working revision:	1.4	Wed Apr 23 17:31:35 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpme2/dpme2_pvm.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2_recip_sumW.c	Status: Up-to-date

   Working revision:	1.2	Wed Apr 23 18:15:17 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/dpme2_recip_sumW.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpme2_utilityW.c 	Status: Up-to-date

   Working revision:	1.2	Wed Apr 23 18:15:18 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpme2/dpme2_utilityW.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftcalls.c       	Status: Up-to-date

   Working revision:	1.4	Wed Apr 23 17:35:57 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpme2/fftcalls.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pmesh_kspace2.c  	Status: Up-to-date

   Working revision:	1.4	Wed Apr 23 17:37:30 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpme2/pmesh_kspace2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pub3dfft.c       	Status: Up-to-date

   Working revision:	1.4	Wed Apr 23 17:39:32 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpme2/pub3dfft.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday April 23, 1997 @ 16:17
Author:	jim

Update of /Projects/l3/cvsroot/text/zurich97
In directory paris:/private/auto303000143/jim/Papers/text/zurich97

Removed Files:
	texput.log 
Log Message:
Doesn't need to be in archive.


===================================================================
File: no file texput.log		Status: Needs Checkout

   Working revision:	No entry for texput.log
   Repository revision:	1.2	/Projects/l3/cvsroot/text/zurich97/Attic/texput.log,v


****************************************
Date:	Wednesday April 23, 1997 @ 16:32
Author:	jim

Update of /Projects/l3/cvsroot/text/zurich97
In directory paris:/private/auto303000143/jim/Papers/text/zurich97

Modified Files:
	Makefile prop_description.tex proposal.tex 
Removed Files:
	prop_alpha.tex prop_budgetjust.tex prop_pending.tex 
Log Message:
Removing budget and alpha-shapes stuff.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.3	Wed Apr 23 21:32:49 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/text/zurich97/Makefile,v

   Existing Tags:
	start                    	(revision: 1.1.1.1)
	text                     	(branch: 1.1.1)

===================================================================
File: prop_description.tex	Status: Up-to-date

   Working revision:	1.3	Wed Apr 23 21:32:53 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/text/zurich97/prop_description.tex,v

   Existing Tags:
	start                    	(revision: 1.1.1.1)
	text                     	(branch: 1.1.1)

===================================================================
File: proposal.tex     	Status: Up-to-date

   Working revision:	1.3	Wed Apr 23 21:32:55 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/text/zurich97/proposal.tex,v

   Existing Tags:
	start                    	(revision: 1.1.1.1)
	text                     	(branch: 1.1.1)

===================================================================
File: no file prop_alpha.tex		Status: Needs Checkout

   Working revision:	No entry for prop_alpha.tex
   Repository revision:	1.2	/Projects/l3/cvsroot/text/zurich97/Attic/prop_alpha.tex,v

===================================================================
File: no file prop_budgetjust.tex		Status: Needs Checkout

   Working revision:	No entry for prop_budgetjust.tex
   Repository revision:	1.2	/Projects/l3/cvsroot/text/zurich97/Attic/prop_budgetjust.tex,v

===================================================================
File: no file prop_pending.tex		Status: Needs Checkout

   Working revision:	No entry for prop_pending.tex
   Repository revision:	1.2	/Projects/l3/cvsroot/text/zurich97/Attic/prop_pending.tex,v


****************************************
Date:	Wednesday April 23, 1997 @ 16:40
Author:	jim

Update of /Projects/l3/cvsroot/text/zurich97
In directory paris:/private/auto303000143/jim/Papers/text/zurich97

Modified Files:
	prop_description.tex proposal.tex 
Log Message:
Removed TOC and matching funds.


===================================================================
File: prop_description.tex	Status: Up-to-date

   Working revision:	1.4	Wed Apr 23 21:40:55 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/text/zurich97/prop_description.tex,v

   Existing Tags:
	start                    	(revision: 1.1.1.1)
	text                     	(branch: 1.1.1)

===================================================================
File: proposal.tex     	Status: Up-to-date

   Working revision:	1.4	Wed Apr 23 21:40:56 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/text/zurich97/proposal.tex,v

   Existing Tags:
	start                    	(revision: 1.1.1.1)
	text                     	(branch: 1.1.1)


****************************************
Date:	Wednesday April 23, 1997 @ 16:48
Author:	jim

Update of /Projects/l3/cvsroot/text/zurich97
In directory paris:/private/auto303000143/jim/Papers/text/zurich97

Modified Files:
	proposal.tex 
Log Message:
Removed some NSF "look and feel".


===================================================================
File: proposal.tex     	Status: Up-to-date

   Working revision:	1.5	Wed Apr 23 21:48:30 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/text/zurich97/proposal.tex,v

   Existing Tags:
	start                    	(revision: 1.1.1.1)
	text                     	(branch: 1.1.1)


****************************************
Date:	Thursday April 24, 1997 @ 13:51
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Corrected parameter bug with DPMTA options.
In particular: FFT Block must be 4 and FFTMp must be a multiple
of FFT Block.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1015	Thu Apr 24 18:51:45 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday April 25, 1997 @ 15:30
Author:	ari

Update of /Projects/l3/cvsroot/text/zurich97
In directory belfast:/private/auto113000132/ari/text/zurich97

Modified Files:
	Makefile prop_description.tex prop_intro.tex prop_mdscope.tex 
	prop_summary.tex proposal.tex 
Added Files:
	prop_gesturespeech.tex 
Removed Files:
	prop_gesture.tex prop_speech.tex 
Log Message:
Tried to remove obvious proposal-ish parts - cut alpha shapes


===================================================================
File: prop_gesturespeech.tex	Status: Up-to-date

   Working revision:	1.1	Fri Apr 25 20:29:54 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/text/zurich97/prop_gesturespeech.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.4	Fri Apr 25 20:29:51 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/text/zurich97/Makefile,v

   Existing Tags:
	start                    	(revision: 1.1.1.1)
	text                     	(branch: 1.1.1)

===================================================================
File: prop_description.tex	Status: Up-to-date

   Working revision:	1.5	Fri Apr 25 20:29:52 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/text/zurich97/prop_description.tex,v

   Existing Tags:
	start                    	(revision: 1.1.1.1)
	text                     	(branch: 1.1.1)

===================================================================
File: prop_intro.tex   	Status: Up-to-date

   Working revision:	1.2	Fri Apr 25 20:29:55 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/text/zurich97/prop_intro.tex,v

   Existing Tags:
	start                    	(revision: 1.1.1.1)
	text                     	(branch: 1.1.1)

===================================================================
File: prop_mdscope.tex 	Status: Up-to-date

   Working revision:	1.2	Fri Apr 25 20:29:57 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/text/zurich97/prop_mdscope.tex,v

   Existing Tags:
	start                    	(revision: 1.1.1.1)
	text                     	(branch: 1.1.1)

===================================================================
File: prop_summary.tex 	Status: Up-to-date

   Working revision:	1.2	Fri Apr 25 20:29:59 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/text/zurich97/prop_summary.tex,v

   Existing Tags:
	start                    	(revision: 1.1.1.1)
	text                     	(branch: 1.1.1)

===================================================================
File: proposal.tex     	Status: Up-to-date

   Working revision:	1.6	Fri Apr 25 20:30:00 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/text/zurich97/proposal.tex,v

   Existing Tags:
	start                    	(revision: 1.1.1.1)
	text                     	(branch: 1.1.1)

===================================================================
File: no file prop_gesture.tex		Status: Needs Checkout

   Working revision:	No entry for prop_gesture.tex
   Repository revision:	1.2	/Projects/l3/cvsroot/text/zurich97/Attic/prop_gesture.tex,v

===================================================================
File: no file prop_speech.tex		Status: Needs Checkout

   Working revision:	No entry for prop_speech.tex
   Repository revision:	1.2	/Projects/l3/cvsroot/text/zurich97/Attic/prop_speech.tex,v


****************************************
Date:	Monday May 5, 1997 @ 10:28
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedHack.h Patch.C 
Log Message:
Added water-water specific code to NonbondedBase.  The cutoff for the temp
pairlist is currently disabled.



===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1012	Mon May  5 15:28:24 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedHack.h	Status: Up-to-date

   Working revision:	1.1005	Mon May  5 15:28:25 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedHack.h,v

   Existing Tags:
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1014	Mon May  5 15:28:26 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday May 5, 1997 @ 11:39
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h 
Log Message:
Corrected cutoff value used with hydrogen grouping.  (groupcutoff2)


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1013	Mon May  5 16:38:57 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1008	Mon May  5 16:38:59 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1008	Mon May  5 16:39:00 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday May 9, 1997 @ 13:24
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C SimParameters.C 
Log Message:
1. Added hydrogen grouping code to improve performance in ComputeNonbondedBase
   CODE ONLY WORKS WITH HYDROGEN GROUPING!
2. Increased the hydrogen group cutoff side from 2A to 2.5A -- 2A gave
   fractionally different values after 100 iterations.  2.5A gives same numbers.
3. Made migration by hydrogen grouping the default in SimParameters.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1014	Fri May  9 18:24:22 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1009	Fri May  9 18:24:23 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1016	Fri May  9 18:24:24 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday May 12, 1997 @ 13:45
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Minor coding changes (looks nicer).


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1015	Mon May 12 18:45:21 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday May 13, 1997 @ 13:30
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h 
Removed Files:
	ComputeNonbondedHack.h 
Log Message:
Removed ComputeNonbondedHack.h!
Reduced a lot of code in Util and Base.
ComputeNonbondedBase.h now only contains the function definitions.
The only heavy macro areas are in Util.C (determining which Base.h to define)
and Base.h (where the functions are defined).


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1016	Tue May 13 18:30:45 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1010	Tue May 13 18:30:47 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1009	Tue May 13 18:30:47 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeNonbondedHack.h		Status: Needs Checkout

   Working revision:	No entry for ComputeNonbondedHack.h
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Attic/ComputeNonbondedHack.h,v


****************************************
Date:	Thursday May 15, 1997 @ 12:43
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedSelf.C 
	ComputeNonbondedUtil.C ComputeNonbondedUtil.h 
Log Message:
Merged Pair and Self to use same headers.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1017	Thu May 15 17:43:47 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1009	Thu May 15 17:43:48 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1011	Thu May 15 17:43:48 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1010	Thu May 15 17:43:49 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday May 20, 1997 @ 10:49
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedExcl.C 
	ComputeNonbondedPair.C ComputeNonbondedSelf.C 
	ComputeNonbondedUtil.h 
Log Message:
Pair, Self, and Excl not use the same parameters!


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1018	Tue May 20 15:49:08 1997
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1013	Tue May 20 15:49:09 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1013	Tue May 20 15:49:09 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1010	Tue May 20 15:49:10 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1011	Tue May 20 15:49:10 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday May 23, 1997 @ 14:29
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/r1/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Removed more macros.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1019	Fri May 23 19:29:38 1997
   Repository revision:	1.1019	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday May 28, 1997 @ 14:31
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	Namd.h 
Log Message:
Added output to show number of days to compute 1 ns.


===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.1006	Wed May 28 19:30:56 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Namd.h,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 29, 1997 @ 14:12
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/r1/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Modified so hydrogen grouping margin offset is a user-defined option.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1017	Thu May 29 19:12:11 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 29, 1997 @ 14:13
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/r1/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	SimParameters.h 
Log Message:
Added hgroupCutoff


===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1011	Thu May 29 19:13:16 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 29, 1997 @ 14:14
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/r1/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h 
Log Message:
Removed some array indexing for minor speed improvement.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1020	Thu May 29 19:14:00 1997
   Repository revision:	1.1020	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1012	Thu May 29 19:14:05 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1012	Thu May 29 19:14:08 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday June 4, 1997 @ 15:14
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/r1/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
Log Message:
Modified to simplify macros.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1021	Wed Jun  4 20:13:50 1997
   Repository revision:	1.1021	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1013	Wed Jun  4 20:13:55 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday June 4, 1997 @ 15:14
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/r1/l1/namd.2.0/Programmers/nealk/namd2/src

Added Files:
	ComputeNonbondedSplitting.h 
Log Message:
Inline splitting functions


===================================================================
File: ComputeNonbondedSplitting.h	Status: Up-to-date

   Working revision:	1.1	Tue May 27 16:24:48 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSplitting.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday June 5, 1997 @ 15:19
Author:	nealk

Update of /Projects/l3/cvsroot/namd2/src
In directory goneril:/tmp_mnt/Projects/l1/l1/namd.2.0/Programmers/nealk/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.h 
Log Message:
Minor modifications for readability and very minor speedup.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1022	Thu Jun  5 20:19:41 1997
   Repository revision:	1.1022	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1013	Thu Jun  5 20:19:46 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday June 27, 1997 @ 16:36
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto134000134/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Hydrogen.h 
Log Message:
Fixed HydrogenGroupID operator < to ensure parents are before children.


===================================================================
File: Hydrogen.h       	Status: Up-to-date

   Working revision:	1.7	Fri Jun 27 21:36:47 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/Hydrogen.h,v

   Existing Tags:
	development-4            	(revision: 1.6)


****************************************
Date:	Tuesday July 8, 1997 @ 10:48
Author:	milind

Update of /Projects/l3/cvsroot/namd2
In directory hamlet:/tmp/cvs-serv4196/namd2

Modified Files:
	Makearch.Origin2000 Makefile 
Log Message:
Made namd2 to work with Origin2000: Again...


===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.2	Tue Jul  8 15:48:00 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/Makearch.Origin2000,v

   Existing Tags:
	development-4            	(revision: 1.1)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1044	Tue Jul  8 15:48:00 1997
   Repository revision:	1.1044	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 8, 1997 @ 10:48
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv4196/namd2/src

Modified Files:
	CollectionMgr.C ComputeNonbondedPair.C ComputeNonbondedUtil.C 
	HomePatch.C LdbCoordinator.C LdbCoordinator.h Namd.h 
	ProxyPatch.C ReductionMgr.C dc.pl 
Log Message:
Made namd2 to work with Origin2000: Again...


===================================================================
File: no file CollectionMgr.C		Status: Needs Checkout

   Working revision:	1.1004	Tue Jul  8 15:48:06 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeNonbondedPair.C		Status: Needs Checkout

   Working revision:	1.1014	Tue Jul  8 15:48:07 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeNonbondedUtil.C		Status: Needs Checkout

   Working revision:	1.1014	Tue Jul  8 15:48:08 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file HomePatch.C		Status: Needs Checkout

   Working revision:	1.1031	Tue Jul  8 15:48:08 1997
   Repository revision:	1.1031	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.17	Tue Jul  8 15:48:00 1997
   Repository revision:	1.17	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	development-4            	(revision: 1.16)

===================================================================
File: no file LdbCoordinator.h		Status: Needs Checkout

   Working revision:	1.12	Tue Jul  8 15:48:10 1997
   Repository revision:	1.12	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	development-4            	(revision: 1.11)

===================================================================
File: no file Namd.h		Status: Needs Checkout

   Working revision:	1.1007	Tue Jul  8 15:48:10 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Namd.h,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ProxyPatch.C		Status: Needs Checkout

   Working revision:	1.1013	Tue Jul  8 15:48:11 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ReductionMgr.C		Status: Needs Checkout

   Working revision:	1.1017	Tue Jul  8 15:48:12 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dc.pl            	Status: Up-to-date

   Working revision:	1.1001	Tue Jul  8 15:48:01 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/dc.pl,v

   Existing Tags:
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 9, 1997 @ 16:26
Author:	milind

Update of /Projects/l3/cvsroot/namd2
In directory hamlet:/tmp/cvs-serv1214/namd2

Modified Files:
	Makefile 
Log Message:
Ported NAMD2 to SP3. The SP specific code is within #ifdef SP2
and #endif's.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1045	Wed Jul  9 21:26:09 1997
   Repository revision:	1.1045	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 9, 1997 @ 16:26
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv1214/namd2/src

Modified Files:
	BroadcastObject.h CollectionMaster.h CollectionMgr.h 
	ComputeHomeTuples.h ComputeMap.h ConfigList.C HomePatchTypes.h 
	PDBData.h ParseOptions.C PositionBox.h PositionOwnerBox.h 
	SimParameters.C dc.pl strlib.C strlib.h 
Log Message:
Ported NAMD2 to SP3. The SP specific code is within #ifdef SP2
and #endif's.


===================================================================
File: no file BroadcastObject.h		Status: Needs Checkout

   Working revision:	1.2	Wed Jul  9 21:26:38 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/BroadcastObject.h,v

   Existing Tags:
	development-4            	(revision: 1.1)

===================================================================
File: no file CollectionMaster.h		Status: Needs Checkout

   Working revision:	1.1007	Wed Jul  9 21:26:39 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file CollectionMgr.h		Status: Needs Checkout

   Working revision:	1.1004	Wed Jul  9 21:26:39 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeHomeTuples.h		Status: Needs Checkout

   Working revision:	1.1008	Wed Jul  9 21:26:40 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeMap.h		Status: Needs Checkout

   Working revision:	1.1009	Wed Jul  9 21:26:40 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ConfigList.C		Status: Needs Checkout

   Working revision:	1.1004	Wed Jul  9 21:26:41 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file HomePatchTypes.h		Status: Needs Checkout

   Working revision:	1.1003	Wed Jul  9 21:26:41 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/HomePatchTypes.h,v

   Existing Tags:
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file PDBData.h		Status: Needs Checkout

   Working revision:	1.1002	Wed Jul  9 21:26:42 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/PDBData.h,v

   Existing Tags:
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ParseOptions.C		Status: Needs Checkout

   Working revision:	1.1004	Wed Jul  9 21:26:42 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file PositionBox.h		Status: Needs Checkout

   Working revision:	1.1003	Wed Jul  9 21:26:43 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/PositionBox.h,v

   Existing Tags:
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: no file PositionOwnerBox.h		Status: Needs Checkout

   Working revision:	1.1004	Wed Jul  9 21:26:44 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.h,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: no file SimParameters.C		Status: Needs Checkout

   Working revision:	1.1018	Wed Jul  9 21:26:44 1997
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dc.pl            	Status: Up-to-date

   Working revision:	1.1002	Wed Jul  9 21:26:27 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/dc.pl,v

   Existing Tags:
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file strlib.C		Status: Needs Checkout

   Working revision:	1.1002	Wed Jul  9 21:26:46 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/strlib.C,v

   Existing Tags:
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file strlib.h		Status: Needs Checkout

   Working revision:	1.1002	Wed Jul  9 21:26:46 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/strlib.h,v

   Existing Tags:
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 9, 1997 @ 16:26
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory hamlet:/tmp/cvs-serv1214/namd2/src/Templates

Modified Files:
	Box.h ObjectArena.h OwnerBox.h ResizeArray.h ResizeArrayIter.h 
	ResizeArrayPrimIter.h ResizeArrayRaw.h SortableResizeArray.h 
	SortedArray.h UniqueSet.h UniqueSetIter.h UniqueSetRaw.h 
	UniqueSortedArray.h 
Log Message:
Ported NAMD2 to SP3. The SP specific code is within #ifdef SP2
and #endif's.


===================================================================
File: Box.h            	Status: Up-to-date

   Working revision:	1.1001	Wed Jul  9 21:26:27 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/Box.h,v

   Existing Tags:
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)
	development-0            	(revision: 1.1)

===================================================================
File: no file ObjectArena.h		Status: Needs Checkout

   Working revision:	1.2	Wed Jul  9 21:26:49 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Templates/ObjectArena.h,v

   Existing Tags:
	development-4            	(revision: 1.1)

===================================================================
File: OwnerBox.h       	Status: Up-to-date

   Working revision:	1.1002	Wed Jul  9 21:26:27 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Templates/OwnerBox.h,v

   Existing Tags:
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)
	development-0            	(revision: 1.1)

===================================================================
File: no file ResizeArray.h		Status: Needs Checkout

   Working revision:	1.1005	Wed Jul  9 21:26:50 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.h,v

   Existing Tags:
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArrayIter.h	Status: Up-to-date

   Working revision:	1.1002	Wed Jul  9 21:26:27 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayIter.h,v

   Existing Tags:
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArrayPrimIter.h	Status: Up-to-date

   Working revision:	1.1001	Wed Jul  9 21:26:29 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayPrimIter.h,v

   Existing Tags:
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ResizeArrayRaw.h		Status: Needs Checkout

   Working revision:	1.5	Wed Jul  9 21:26:52 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayRaw.h,v

   Existing Tags:
	development-4            	(revision: 1.4)

===================================================================
File: SortableResizeArray.h	Status: Up-to-date

   Working revision:	1.1004	Wed Jul  9 21:26:29 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.h,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortedArray.h    	Status: Up-to-date

   Working revision:	1.1003	Wed Jul  9 21:26:29 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Templates/SortedArray.h,v

   Existing Tags:
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file UniqueSet.h		Status: Needs Checkout

   Working revision:	1.3	Wed Jul  9 21:26:53 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSet.h,v

   Existing Tags:
	development-4            	(revision: 1.2)

===================================================================
File: no file UniqueSetIter.h		Status: Needs Checkout

   Working revision:	1.3	Wed Jul  9 21:26:54 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetIter.h,v

   Existing Tags:
	development-4            	(revision: 1.2)

===================================================================
File: no file UniqueSetRaw.h		Status: Needs Checkout

   Working revision:	1.5	Wed Jul  9 21:26:54 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetRaw.h,v

   Existing Tags:
	development-4            	(revision: 1.4)

===================================================================
File: UniqueSortedArray.h	Status: Up-to-date

   Working revision:	1.1003	Wed Jul  9 21:26:29 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSortedArray.h,v

   Existing Tags:
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 9, 1997 @ 16:27
Author:	milind

Update of /Projects/l3/cvsroot/namd2
In directory hamlet:/tmp/cvs-serv1434/namd2

Added Files:
	Makearch.SP3 
Log Message:
Added arch specific file for SP3.


===================================================================
File: Makearch.SP3     	Status: Up-to-date

   Working revision:	1.1	Wed Jul  9 21:27:36 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/Makearch.SP3,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday July 9, 1997 @ 17:18
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory hamlet:/tmp/cvs-serv1565/namd2/src/Templates

Modified Files:
	UniqueSetRaw.C 
Log Message:
Fixed a bug in the assignment operator for templated class
UniqueSetRaw. The C++ compiler on SP3 treated a missing return value
as an error.


===================================================================
File: no file UniqueSetRaw.C		Status: Needs Checkout

   Working revision:	1.4	Wed Jul  9 22:18:17 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetRaw.C,v

   Existing Tags:
	development-4            	(revision: 1.3)


****************************************
Date:	Thursday July 10, 1997 @ 21:20
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l2/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Fixed hgroupCutoff not propagated to all nodes bug.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1019	Fri Jul 11 02:19:59 1997
   Repository revision:	1.1019	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 30, 1997 @ 15:51
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l2/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Probable bug fix - added sentinal to end of parilist.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1023	Wed Jul 30 20:51:47 1997
   Repository revision:	1.1023	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 30, 1997 @ 16:23
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory io:/tmp_mnt/Projects/l2/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
More possible bugs (memory references).


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1024	Wed Jul 30 21:23:22 1997
   Repository revision:	1.1024	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 1, 1997 @ 13:45
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	common.h 
Log Message:
Added #ifdef T3E, for T3E specific include


===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1007	Fri Aug  1 18:45:22 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 1, 1997 @ 13:46
Author:	brunner

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/l1/l1/namd.2.0/Programmers/brunner/namd2

Added Files:
	Make.depends 
Log Message:
Make.depends is checked in, for machines that do not have g++, so they
can't make there own.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.1	Thu Jul 24 21:06:52 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/Make.depends,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday August 1, 1997 @ 13:47
Author:	brunner

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/l1/l1/namd.2.0/Programmers/brunner/namd2

Added Files:
	Makearch.T3E 
Log Message:
Makefile for PSC T3E


===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.1	Fri Aug  1 18:43:48 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/Makearch.T3E,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday August 12, 1997 @ 11:33
Author:	milind

Update of /Projects/l3/cvsroot/namd2/arch
In directory ophelia:/tmp_mnt/Projects/r5/milind/namd2/arch

Log Message:
Directory /Projects/l3/cvsroot/namd2/arch added to the repository


[input file was '-']

****************************************
Date:	Tuesday August 12, 1997 @ 11:37
Author:	milind

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/r5/milind/namd2

Modified Files:
	Makefile 
Added Files:
	config 
Removed Files:
	Makearch.HPUX10 Makearch.HPUX9 Makearch.Origin2000 
	Makearch.SP3 Makearch.T3E Makearch.g++ Makearch.template 
Log Message:
Restructured the Makefile and Makearch structure.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.1	Tue Aug 12 16:00:43 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/config,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1046	Tue Aug 12 15:59:51 1997
   Repository revision:	1.1046	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Makearch.HPUX10		Status: Needs Checkout

   Working revision:	No entry for Makearch.HPUX10
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/Attic/Makearch.HPUX10,v

===================================================================
File: no file Makearch.HPUX9		Status: Needs Checkout

   Working revision:	No entry for Makearch.HPUX9
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/Attic/Makearch.HPUX9,v

===================================================================
File: no file Makearch.Origin2000		Status: Needs Checkout

   Working revision:	No entry for Makearch.Origin2000
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/Attic/Makearch.Origin2000,v

===================================================================
File: no file Makearch.SP3		Status: Needs Checkout

   Working revision:	No entry for Makearch.SP3
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/Attic/Makearch.SP3,v

===================================================================
File: no file Makearch.T3E		Status: Needs Checkout

   Working revision:	No entry for Makearch.T3E
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/Attic/Makearch.T3E,v

===================================================================
File: no file Makearch.g++		Status: Needs Checkout

   Working revision:	No entry for Makearch.g++
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/Attic/Makearch.g++,v

===================================================================
File: no file Makearch.template		Status: Needs Checkout

   Working revision:	No entry for Makearch.template
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/Attic/Makearch.template,v


****************************************
Date:	Tuesday August 12, 1997 @ 11:38
Author:	milind

Update of /Projects/l3/cvsroot/namd2/arch
In directory ophelia:/tmp_mnt/Projects/r5/milind/namd2/arch

Added Files:
	Makearch.HPUX10 Makearch.HPUX9 Makearch.Origin2000 
	Makearch.SP3 Makearch.T3E Makearch.g++ Makearch.template 
Log Message:
Restructured the Makefile and Makearch structure.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.1	Thu Apr  3 19:29:04 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.HPUX9   	Status: Up-to-date

   Working revision:	1.1	Tue Apr  8 14:21:48 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/arch/Makearch.HPUX9,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.1	Tue Jul  8 15:48:03 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.SP3     	Status: Up-to-date

   Working revision:	1.1	Wed Jul  9 21:27:37 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/arch/Makearch.SP3,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.1	Fri Aug  1 18:47:12 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.g++     	Status: Up-to-date

   Working revision:	1.1	Thu Apr  3 19:29:06 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/arch/Makearch.g++,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.template	Status: Up-to-date

   Working revision:	1.1	Thu Apr  3 19:29:07 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/arch/Makearch.template,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday August 12, 1997 @ 11:38
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	dc.pl 
Log Message:
Removed the #! line because perl path is not standard


===================================================================
File: dc.pl            	Status: Up-to-date

   Working revision:	1.1003	Tue Aug 12 16:00:00 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/dc.pl,v

   Existing Tags:
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 12, 1997 @ 17:18
Author:	milind

Update of /Projects/l3/cvsroot/namd2
In directory hamlet:/tmp/cvs-serv23821/namd2

Modified Files:
	Makefile 
Log Message:
Made NAMD2 to link on Solaris machines.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1047	Tue Aug 12 22:18:34 1997
   Repository revision:	1.1047	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 12, 1997 @ 17:18
Author:	milind

Update of /Projects/l3/cvsroot/namd2/arch
In directory hamlet:/tmp/cvs-serv23821/namd2/arch

Added Files:
	Makearch.Solaris 
Log Message:
Made NAMD2 to link on Solaris machines.


===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.1	Tue Aug 12 22:18:34 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday August 12, 1997 @ 17:18
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv23821/namd2/src

Modified Files:
	ComputeNonbondedExcl.C Node.h PDBData.C 
Log Message:
Made NAMD2 to link on Solaris machines.


===================================================================
File: no file ComputeNonbondedExcl.C		Status: Needs Checkout

   Working revision:	1.1014	Tue Aug 12 22:18:41 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Node.h		Status: Needs Checkout

   Working revision:	1.1008	Tue Aug 12 22:18:42 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file PDBData.C		Status: Needs Checkout

   Working revision:	1.1002	Tue Aug 12 22:18:43 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/PDBData.C,v

   Existing Tags:
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 12, 1997 @ 17:18
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory hamlet:/tmp/cvs-serv23821/namd2/src/Templates

Modified Files:
	UniqueSetRaw.C UniqueSetRaw.h 
Log Message:
Made NAMD2 to link on Solaris machines.


===================================================================
File: no file UniqueSetRaw.C		Status: Needs Checkout

   Working revision:	1.5	Tue Aug 12 22:18:44 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetRaw.C,v

   Existing Tags:
	development-4            	(revision: 1.3)

===================================================================
File: no file UniqueSetRaw.h		Status: Needs Checkout

   Working revision:	1.6	Tue Aug 12 22:18:45 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetRaw.h,v

   Existing Tags:
	development-4            	(revision: 1.4)


****************************************
Date:	Wednesday August 13, 1997 @ 14:52
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv1172/namd2/src

Modified Files:
	Controller.C 
Log Message:
Made two #defines as inlined functions to fix a bug on solaris.


===================================================================
File: no file Controller.C		Status: Needs Checkout

   Working revision:	1.1022	Wed Aug 13 14:52:20 1997
   Repository revision:	1.1022	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 13, 1997 @ 16:00
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l2/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	Inform.C NamdOneTools.C Output.C common.h 
Log Message:
Made binary files always use 32 bits for the number of atoms, so that it
works on both 64 and 32-bit machines.  Also, I made Inform.C use CPrintf,
to fix the I/O buffering.


===================================================================
File: Inform.C         	Status: Up-to-date

   Working revision:	1.1002	Wed Aug 13 21:00:16 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Inform.C,v

   Existing Tags:
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.8	Wed Aug 13 21:00:17 1997
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	development-4            	(revision: 1.7)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.7	Wed Aug 13 21:00:18 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1008	Wed Aug 13 21:00:19 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday August 14, 1997 @ 10:29
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	NamdOneTools.C WorkDistrib.C 
Log Message:

More fixes for 32 bit ints in binary restart format



===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.9	Thu Aug 14 15:29:48 1997
   Repository revision:	1.9	/Projects/l3/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	development-4            	(revision: 1.7)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1031	Thu Aug 14 15:29:48 1997
   Repository revision:	1.1031	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 18, 1997 @ 15:16
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory glasgow:/tmp_mnt/Projects/r1/user-projects/sergei/namd2/src

Modified Files:
	ComputeRestraints.C ComputeRestraints.h 
Log Message:
added moving restraint capability with input from config file
one atom only


===================================================================
File: ComputeRestraints.C	Status: Up-to-date

   Working revision:	1.2	Mon Aug 18 20:16:04 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ComputeRestraints.C,v

   Existing Tags:
	development-4            	(revision: 1.1)

===================================================================
File: ComputeRestraints.h	Status: Up-to-date

   Working revision:	1.2	Mon Aug 18 20:16:06 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ComputeRestraints.h,v

   Existing Tags:
	development-4            	(revision: 1.1)


****************************************
Date:	Monday August 18, 1997 @ 5:02
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory lyon:/tmp_mnt/Projects/p2/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeDihedrals.C ComputeImpropers.C Molecule.C 
Log Message:
Fixed bugs related to multiple dihedrals and exclude 1-2, 1-3, or 1-4.


===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1006	Mon Aug 18 05:02:53 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1005	Mon Aug 18 05:02:54 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1014	Mon Aug 18 05:02:56 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 18, 1997 @ 17:45
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory glasgow:/tmp_mnt/Projects/r1/user-projects/sergei/namd2/src

Modified Files:
	SimParameters.C SimParameters.h 
Log Message:
added moving restraint capability with input from config file
(for one atom only)


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1020	Mon Aug 18 17:45:09 1997
   Repository revision:	1.1020	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1012	Mon Aug 18 17:45:11 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 18, 1997 @ 23:01
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory lyon:/tmp_mnt/Projects/p2/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Namd.h 
Log Message:
Properly reports "Days per ns" with nonzero firstTimeStep.


===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.1008	Mon Aug 18 23:01:17 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/Namd.h,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 20, 1997 @ 18:27
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory lyon:/tmp_mnt/Projects/p2/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Compute.C Compute.h ComputePatch.C ComputePatch.h 
	ComputePatchPair.C ComputePatchPair.h WorkDistrib.C 
	WorkDistrib.ci WorkDistrib.h 
Log Message:
Created multiple enqueueWork entry points to aid analysis.


===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1012	Wed Aug 20 23:27:36 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1007	Wed Aug 20 23:27:37 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1008	Wed Aug 20 23:27:38 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.1004	Wed Aug 20 23:27:38 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputePatch.h,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1011	Wed Aug 20 23:27:39 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.1006	Wed Aug 20 23:27:40 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.h,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1032	Wed Aug 20 23:27:41 1997
   Repository revision:	1.1032	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1005	Wed Aug 20 23:27:42 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1010	Wed Aug 20 23:27:43 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday August 21, 1997 @ 14:57
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory paris:/private/auto162000138/l1/namd.2.0/Programmers/jim/namd2/src

Added Files:
	BroadcastMgr.html CollectionMaster.html CollectionMgr.html 
	ComputeMgr.html LdbCoordinator.html Node.html PatchMgr.html 
	ProxyMgr.html ReductionMgr.html WorkDistrib.html index.html 
	main.html 
Log Message:
Beginnings of documentation.  These are the branch office chares.


===================================================================
File: BroadcastMgr.html	Status: Up-to-date

   Working revision:	1.1	Thu Aug 21 19:25:50 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: CollectionMaster.html	Status: Up-to-date

   Working revision:	1.1	Thu Aug 21 19:14:48 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/CollectionMaster.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: CollectionMgr.html	Status: Up-to-date

   Working revision:	1.1	Thu Aug 21 19:08:34 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/CollectionMgr.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMgr.html  	Status: Up-to-date

   Working revision:	1.1	Thu Aug 21 19:48:41 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ComputeMgr.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.html	Status: Up-to-date

   Working revision:	1.1	Thu Aug 21 19:53:01 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Node.html        	Status: Up-to-date

   Working revision:	1.1	Wed Aug 20 21:01:54 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Node.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PatchMgr.html    	Status: Up-to-date

   Working revision:	1.1	Thu Aug 21 19:50:16 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/PatchMgr.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ProxyMgr.html    	Status: Up-to-date

   Working revision:	1.1	Thu Aug 21 19:51:51 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ProxyMgr.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ReductionMgr.html	Status: Up-to-date

   Working revision:	1.1	Thu Aug 21 19:30:34 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ReductionMgr.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: WorkDistrib.html 	Status: Up-to-date

   Working revision:	1.1	Thu Aug 21 18:46:35 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/WorkDistrib.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: index.html       	Status: Up-to-date

   Working revision:	1.1	Thu Aug 21 18:56:29 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/index.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: main.html        	Status: Up-to-date

   Working revision:	1.1	Wed Aug 20 20:47:43 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/main.html,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday August 21, 1997 @ 15:29
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Projects/p2/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	PatchMgr.html ProxyMgr.html 
Log Message:
Finished adding descriptions.


===================================================================
File: PatchMgr.html    	Status: Up-to-date

   Working revision:	1.2	Thu Aug 21 20:14:21 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/PatchMgr.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ProxyMgr.html    	Status: Up-to-date

   Working revision:	1.2	Thu Aug 21 20:26:38 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ProxyMgr.html,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday August 22, 1997 @ 14:27
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/p2/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	Broadcasts.h Controller.C Rebalancer.C Sequencer.C 
Log Message:
Added cycle barrier, enabled by compiling with -DCYCLE_BARRIER


===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.2	Fri Aug 22 19:27:34 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	development-4            	(revision: 1.1)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1023	Fri Aug 22 19:27:36 1997
   Repository revision:	1.1023	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.9	Thu Aug 21 15:09:37 1997
   Repository revision:	1.9	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	development-4            	(revision: 1.8)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1032	Fri Aug 22 19:27:37 1997
   Repository revision:	1.1032	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 22, 1997 @ 14:54
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv29110/src

Modified Files:
	Controller.C Node.C 
Log Message:
Added user event EndOfTimeStep.


===================================================================
File: no file Controller.C		Status: Needs Checkout

   Working revision:	1.1024	Fri Aug 22 19:54:42 1997
   Repository revision:	1.1024	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Node.C		Status: Needs Checkout

   Working revision:	1.1016	Fri Aug 22 19:54:42 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 22, 1997 @ 15:12
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv29230/src

Modified Files:
	CollectionMgr.C HomePatch.C ProxyPatch.C ReductionMgr.C 
	WorkDistrib.C 
Log Message:
Turned on Priorities.


===================================================================
File: no file CollectionMgr.C		Status: Needs Checkout

   Working revision:	1.1005	Fri Aug 22 20:12:03 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file HomePatch.C		Status: Needs Checkout

   Working revision:	1.1032	Fri Aug 22 20:12:03 1997
   Repository revision:	1.1032	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ProxyPatch.C		Status: Needs Checkout

   Working revision:	1.1014	Fri Aug 22 20:12:04 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ReductionMgr.C		Status: Needs Checkout

   Working revision:	1.1018	Fri Aug 22 20:12:04 1997
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file WorkDistrib.C		Status: Needs Checkout

   Working revision:	1.1033	Fri Aug 22 20:12:05 1997
   Repository revision:	1.1033	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 26, 1997 @ 11:26
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory europa:/tmp_mnt/Projects/l2/l1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	BroadcastMgr.C CollectionMgr.C Compute.C Compute.h 
	ComputeHomePatches.C ComputeHomeTuples.C 
	ComputeNonbondedPair.C ComputeNonbondedPair.h 
	ComputeNonbondedSelf.h ComputePatch.C ComputePatchPair.C 
	HomePatch.C Priorities.C Priorities.h ProxyPatch.C 
	ReductionMgr.C 
Log Message:
Revamped prioritites for petter performance and easier changes.


===================================================================
File: BroadcastMgr.C   	Status: Up-to-date

   Working revision:	1.3	Tue Aug 26 16:26:10 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.C,v

   Existing Tags:
	development-4            	(revision: 1.2)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1006	Tue Aug 26 16:26:10 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1013	Tue Aug 26 16:26:11 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1008	Tue Aug 26 16:26:11 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.1004	Tue Aug 26 16:26:12 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.C,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1012	Tue Aug 26 16:26:12 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1015	Tue Aug 26 16:26:13 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1007	Tue Aug 26 16:26:13 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.1005	Tue Aug 26 16:26:14 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1009	Tue Aug 26 16:26:14 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1012	Tue Aug 26 16:26:15 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1033	Tue Aug 26 16:26:15 1997
   Repository revision:	1.1033	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Priorities.C     	Status: Up-to-date

   Working revision:	1.2	Mon Aug 25 18:58:18 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Priorities.C,v

   Existing Tags:
	development-4            	(revision: 1.1)

===================================================================
File: Priorities.h     	Status: Up-to-date

   Working revision:	1.3	Tue Aug 26 16:26:16 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Priorities.h,v

   Existing Tags:
	development-4            	(revision: 1.2)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1015	Tue Aug 26 16:26:16 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1019	Tue Aug 26 16:26:17 1997
   Repository revision:	1.1019	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 26, 1997 @ 11:38
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv12588

Modified Files:
	LdbCoordinator.C 
Log Message:
Idle computation turned on


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.18	Tue Aug 26 16:38:21 1997
   Repository revision:	1.18	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	development-4            	(revision: 1.16)


****************************************
Date:	Tuesday August 26, 1997 @ 11:39
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv12611

Modified Files:
	Rebalancer.C 
Log Message:
Added some diagnostic messages, which must probably be removed
later


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.10	Tue Aug 26 16:39:04 1997
   Repository revision:	1.10	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	development-4            	(revision: 1.8)


****************************************
Date:	Tuesday August 26, 1997 @ 11:39
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv12635

Modified Files:
	AlgSeven.C 
Log Message:
Changed TINYLOAD threshold


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.4	Tue Aug 26 16:39:39 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	development-4            	(revision: 1.3)


****************************************
Date:	Tuesday August 26, 1997 @ 11:40
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv12657

Modified Files:
	Controller.C 
Log Message:
Added a message to the CYCLE_BARRIER sync


===================================================================
File: no file Controller.C		Status: Needs Checkout

   Working revision:	1.1025	Tue Aug 26 16:40:22 1997
   Repository revision:	1.1025	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 26, 1997 @ 11:42
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/arch
In directory hamlet:/tmp/cvs-serv12683

Modified Files:
	Makearch.T3E 
Log Message:
Turned on cycle sync and optimization


===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.2	Tue Aug 26 16:42:02 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday August 27, 1997 @ 13:37
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv9730

Modified Files:
	AlgSeven.C LdbCoordinator.C LdbCoordinator.ci LdbCoordinator.h 
Log Message:
Load balancer end of computation sync added.  AlgSeven modified slightly.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.5	Wed Aug 27 18:36:57 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	development-4            	(revision: 1.3)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.19	Wed Aug 27 18:36:57 1997
   Repository revision:	1.19	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	development-4            	(revision: 1.16)

===================================================================
File: no file LdbCoordinator.ci		Status: Needs Checkout

   Working revision:	1.3	Wed Aug 27 18:36:59 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.ci,v

   Existing Tags:
	development-4            	(revision: 1.2)

===================================================================
File: no file LdbCoordinator.h		Status: Needs Checkout

   Working revision:	1.13	Wed Aug 27 18:37:00 1997
   Repository revision:	1.13	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	development-4            	(revision: 1.11)


****************************************
Date:	Friday August 29, 1997 @ 17:00
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv14261/src

Modified Files:
	AlgSeven.C LdbCoordinator.C LdbCoordinator.h Rebalancer.C 
	Set.C 
Log Message:
Load balancing improvements, and some diagnostic prints that need
to be removed, but won't occur if load balancing is off.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.6	Fri Aug 29 22:00:26 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	development-4            	(revision: 1.3)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.20	Fri Aug 29 22:00:27 1997
   Repository revision:	1.20	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	development-4            	(revision: 1.16)

===================================================================
File: no file LdbCoordinator.h		Status: Needs Checkout

   Working revision:	1.14	Fri Aug 29 22:00:29 1997
   Repository revision:	1.14	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	development-4            	(revision: 1.11)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.11	Fri Aug 29 22:00:27 1997
   Repository revision:	1.11	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	development-4            	(revision: 1.8)

===================================================================
File: Set.C            	Status: Up-to-date

   Working revision:	1.6	Fri Aug 29 22:00:27 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/Set.C,v

   Existing Tags:
	development-4            	(revision: 1.5)


****************************************
Date:	Tuesday September 2, 1997 @ 10:30
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	LdbCoordinator.h 
Log Message:
Changed some static arrays to allow only a max of 16384 computes


===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.15	Tue Sep  2 15:30:11 1997
   Repository revision:	1.15	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	development-4            	(revision: 1.11)


****************************************
Date:	Friday September 5, 1997 @ 14:34
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta-2.6

Log Message:
Directory /Projects/l3/cvsroot/namd2/dpmta-2.6 added to the repository


[input file was '-']

****************************************
Date:	Friday September 5, 1997 @ 14:37
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/data
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta-2.6/data

Log Message:
Directory /Projects/l3/cvsroot/namd2/dpmta-2.6/data added to the repository


[input file was '-']

****************************************
Date:	Friday September 5, 1997 @ 14:37
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/doc
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta-2.6/doc

Log Message:
Directory /Projects/l3/cvsroot/namd2/dpmta-2.6/doc added to the repository


[input file was '-']

****************************************
Date:	Friday September 5, 1997 @ 14:37
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/mpole
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta-2.6/mpole

Log Message:
Directory /Projects/l3/cvsroot/namd2/dpmta-2.6/mpole added to the repository


[input file was '-']

****************************************
Date:	Friday September 5, 1997 @ 14:37
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta-2.6/src

Log Message:
Directory /Projects/l3/cvsroot/namd2/dpmta-2.6/src added to the repository


[input file was '-']

****************************************
Date:	Friday September 5, 1997 @ 14:41
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta-2.6

Added Files:
	Makefile README.HPPA 
Log Message:
Original distribution.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:08 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: README.HPPA      	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:09 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/README.HPPA,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday September 5, 1997 @ 14:41
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/mpole
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta-2.6/mpole

Added Files:
	Makefile mpe.h mpe_allocC.c mpe_allocLJ.c mpe_fft.c mpe_fftC.h 
	mpe_legendre.h mpe_misc.c mpe_mpoleC.c mpe_mpoleLJ.c 
	mpe_testC.c mpe_testLJ.c 
Log Message:
Original distribution.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:26 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe.h            	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:27 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/mpe.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_allocC.c     	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:28 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/mpe_allocC.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_allocLJ.c    	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:28 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/mpe_allocLJ.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_fft.c        	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:29 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/mpe_fft.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_fftC.h       	Status: Up-to-date

   Working revision:	1.1	Mon May 19 16:06:53 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/mpe_fftC.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_legendre.h   	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:31 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/mpe_legendre.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_misc.c       	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:31 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/mpe_misc.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_mpoleC.c     	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:32 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/mpe_mpoleC.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_mpoleLJ.c    	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:33 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/mpe_mpoleLJ.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_testC.c      	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:34 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/mpe_testC.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_testLJ.c     	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:34 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/mpe_testLJ.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday September 5, 1997 @ 14:42
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta-2.6/src

Added Files:
	Makefile Makefile.cray Makefile.serial README dpmta.h 
	dpmta_cell.h dpmta_direct.c dpmta_error.c dpmta_mastiface.c 
	dpmta_mastinit.c dpmta_mastiter.c dpmta_pvm.h dpmta_serial.c 
	dpmta_slave.c dpmta_slave.h dpmta_slvclean.c dpmta_slvcomm.c 
	dpmta_slvcompute.c dpmta_slvmacro.c dpmta_slvmcalc.c 
	dpmta_slvmisc.c dpmta_slvmkcell.c dpmta_slvmkhl.c 
	dpmta_slvmkiil.c dpmta_slvmkil.c dpmta_slvmkil.h 
	dpmta_slvpcalc.c dpmta_slvscale.c dpmta_slvstart.c 
	dpmta_t3dlib.c dpmta_test.c dpmta_test2.c dpmta_test2b.c 
	dpmta_test3.c dpmta_test4.c dpmta_test5.c dpmta_testdump.c 
	dpmta_timer.c dpmta_timer.h dpmta_version.h 
Log Message:
Original distribution.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:47 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile.cray    	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:47 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/Makefile.cray,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile.serial  	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:48 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/Makefile.serial,v

   Existing Tags:
	No Tags Exist

===================================================================
File: README           	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:49 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/README,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta.h          	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:50 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_cell.h     	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:50 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_cell.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_direct.c   	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:51 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_direct.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_error.c    	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:52 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_error.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastiface.c	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:53 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_mastiface.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastinit.c 	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:54 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_mastinit.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastiter.c 	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:54 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_mastiter.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_pvm.h      	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:55 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_pvm.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_serial.c   	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:56 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_serial.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slave.c    	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:57 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slave.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slave.h    	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:57 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slave.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvclean.c 	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:58 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvclean.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvcomm.c  	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:59 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvcomm.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvcompute.c	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:41:59 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvcompute.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmacro.c 	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:00 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvmacro.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmcalc.c 	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:01 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvmcalc.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmisc.c  	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:02 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvmisc.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkcell.c	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:03 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvmkcell.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkhl.c  	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:04 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvmkhl.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkiil.c 	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:04 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvmkiil.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkil.c  	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:05 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvmkil.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkil.h  	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:06 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvmkil.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvpcalc.c 	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:07 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvpcalc.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvscale.c 	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:08 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvscale.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvstart.c 	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:08 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvstart.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_t3dlib.c   	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:09 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_t3dlib.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test.c     	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:10 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test2.c    	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:11 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test2b.c   	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:12 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test2b.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test3.c    	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:13 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test3.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test4.c    	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:13 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test4.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test5.c    	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:14 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test5.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_testdump.c 	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:15 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_testdump.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_timer.c    	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:16 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_timer.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_timer.h    	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:17 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_timer.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_version.h  	Status: Up-to-date

   Working revision:	1.1	Fri Sep  5 19:42:18 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_version.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday September 5, 1997 @ 15:14
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h SimParameters.C 
Log Message:
Small fixes.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1025	Fri Sep  5 20:14:27 1997
   Repository revision:	1.1025	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1021	Fri Sep  5 20:14:28 1997
   Repository revision:	1.1021	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 8, 1997 @ 17:46
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/doc
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/doc

Log Message:
Directory /Projects/l3/cvsroot/namd2/doc added to the repository


[input file was '-']

****************************************
Date:	Monday September 8, 1997 @ 17:50
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/doc
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/doc

Added Files:
	BroadcastMgr.html CollectionMaster.html CollectionMgr.html 
	ComputeMgr.html LdbCoordinator.html Node.html PatchMgr.html 
	ProxyMgr.html ReductionMgr.html WorkDistrib.html index.html 
	main.html 
Log Message:
Moved BOC files into new doc directory.


===================================================================
File: BroadcastMgr.html	Status: Up-to-date

   Working revision:	1.1	Mon Sep  8 22:43:59 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/doc/BroadcastMgr.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: CollectionMaster.html	Status: Up-to-date

   Working revision:	1.1	Mon Sep  8 22:43:59 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/doc/CollectionMaster.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: CollectionMgr.html	Status: Up-to-date

   Working revision:	1.1	Mon Sep  8 22:43:59 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/doc/CollectionMgr.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMgr.html  	Status: Up-to-date

   Working revision:	1.1	Mon Sep  8 22:43:59 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/doc/ComputeMgr.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.html	Status: Up-to-date

   Working revision:	1.1	Mon Sep  8 22:43:59 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/doc/LdbCoordinator.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Node.html        	Status: Up-to-date

   Working revision:	1.1	Mon Sep  8 22:43:59 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/doc/Node.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PatchMgr.html    	Status: Up-to-date

   Working revision:	1.1	Mon Sep  8 22:44:00 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/doc/PatchMgr.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ProxyMgr.html    	Status: Up-to-date

   Working revision:	1.1	Mon Sep  8 22:44:00 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/doc/ProxyMgr.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ReductionMgr.html	Status: Up-to-date

   Working revision:	1.1	Mon Sep  8 22:44:00 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/doc/ReductionMgr.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: WorkDistrib.html 	Status: Up-to-date

   Working revision:	1.1	Mon Sep  8 22:44:00 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/doc/WorkDistrib.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: index.html       	Status: Up-to-date

   Working revision:	1.1	Mon Sep  8 22:44:00 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/doc/index.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: main.html        	Status: Up-to-date

   Working revision:	1.1	Mon Sep  8 22:44:00 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/doc/main.html,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday September 8, 1997 @ 18:18
Author:	jim

Update of /Projects/l3/cvsroot/namd2/doc
In directory paris:/private/auto88000139/Programmers/jim/namd2/doc

Modified Files:
	index.html 
Added Files:
	BranchOfficeChares.html 
Removed Files:
	BroadcastMgr.html CollectionMaster.html CollectionMgr.html 
	ComputeMgr.html LdbCoordinator.html Node.html PatchMgr.html 
	ProxyMgr.html ReductionMgr.html WorkDistrib.html main.html 
Log Message:
Combined BOC files into one, revised index.


===================================================================
File: BranchOfficeChares.html	Status: Up-to-date

   Working revision:	1.1	Mon Sep  8 23:04:50 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/doc/BranchOfficeChares.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: index.html       	Status: Up-to-date

   Working revision:	1.2	Mon Sep  8 23:15:37 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/doc/index.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file BroadcastMgr.html		Status: Needs Checkout

   Working revision:	No entry for BroadcastMgr.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/doc/Attic/BroadcastMgr.html,v

===================================================================
File: no file CollectionMaster.html		Status: Needs Checkout

   Working revision:	No entry for CollectionMaster.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/doc/Attic/CollectionMaster.html,v

===================================================================
File: no file CollectionMgr.html		Status: Needs Checkout

   Working revision:	No entry for CollectionMgr.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/doc/Attic/CollectionMgr.html,v

===================================================================
File: no file ComputeMgr.html		Status: Needs Checkout

   Working revision:	No entry for ComputeMgr.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/doc/Attic/ComputeMgr.html,v

===================================================================
File: no file LdbCoordinator.html		Status: Needs Checkout

   Working revision:	No entry for LdbCoordinator.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/doc/Attic/LdbCoordinator.html,v

===================================================================
File: no file Node.html		Status: Needs Checkout

   Working revision:	No entry for Node.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/doc/Attic/Node.html,v

===================================================================
File: no file PatchMgr.html		Status: Needs Checkout

   Working revision:	No entry for PatchMgr.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/doc/Attic/PatchMgr.html,v

===================================================================
File: no file ProxyMgr.html		Status: Needs Checkout

   Working revision:	No entry for ProxyMgr.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/doc/Attic/ProxyMgr.html,v

===================================================================
File: no file ReductionMgr.html		Status: Needs Checkout

   Working revision:	No entry for ReductionMgr.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/doc/Attic/ReductionMgr.html,v

===================================================================
File: no file WorkDistrib.html		Status: Needs Checkout

   Working revision:	No entry for WorkDistrib.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/doc/Attic/WorkDistrib.html,v

===================================================================
File: no file main.html		Status: Needs Checkout

   Working revision:	No entry for main.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/doc/Attic/main.html,v


****************************************
Date:	Monday September 8, 1997 @ 19:15
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/doc
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/doc

Modified Files:
	BranchOfficeChares.html index.html 
Added Files:
	Glossary.html HowThingsWork.html 
Log Message:
Added more content.


===================================================================
File: Glossary.html    	Status: Up-to-date

   Working revision:	1.1	Tue Sep  9 00:12:46 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/doc/Glossary.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HowThingsWork.html	Status: Up-to-date

   Working revision:	1.1	Mon Sep  8 23:41:16 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/doc/HowThingsWork.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BranchOfficeChares.html	Status: Up-to-date

   Working revision:	1.2	Mon Sep  8 23:41:50 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/doc/BranchOfficeChares.html,v

   Existing Tags:
	No Tags Exist

===================================================================
File: index.html       	Status: Up-to-date

   Working revision:	1.3	Mon Sep  8 23:32:51 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/doc/index.html,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday September 12, 1997 @ 17:56
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6
In directory ganymede:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta-2.6

Modified Files:
	Makefile 
Log Message:
Modifications to work with converse pvm.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:10 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/Makefile,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday September 12, 1997 @ 17:56
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/mpole
In directory ganymede:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta-2.6/mpole

Modified Files:
	Makefile 
Log Message:
Modifications to work with converse pvm.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:21 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/Makefile,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday September 12, 1997 @ 17:56
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/src
In directory ganymede:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta-2.6/src

Modified Files:
	dpmta_direct.c dpmta_mastiface.c dpmta_mastinit.c 
	dpmta_mastiter.c dpmta_slave.c dpmta_slvcomm.c 
	dpmta_slvmacro.c dpmta_slvmkiil.c dpmta_t3dlib.c dpmta_test.c 
	dpmta_test2.c dpmta_test2b.c dpmta_test3.c dpmta_test4.c 
	dpmta_test5.c dpmta_timer.c 
Added Files:
	Makefile.converse 
Log Message:
Modifications to work with converse pvm.


===================================================================
File: Makefile.converse	Status: Up-to-date

   Working revision:	1.1	Fri Sep 12 22:56:28 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/Makefile.converse,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_direct.c   	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:29 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_direct.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastiface.c	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:30 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_mastiface.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastinit.c 	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:30 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_mastinit.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastiter.c 	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:31 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_mastiter.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slave.c    	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:32 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slave.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvcomm.c  	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:32 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvcomm.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmacro.c 	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:33 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvmacro.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkiil.c 	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:34 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvmkiil.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_t3dlib.c   	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:34 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_t3dlib.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test.c     	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:35 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test2.c    	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:36 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test2b.c   	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:36 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test2b.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test3.c    	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:37 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test3.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test4.c    	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:38 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test4.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test5.c    	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:38 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test5.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_timer.c    	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 22:56:39 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_timer.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday September 12, 1997 @ 18:04
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory ganymede:/tmp_mnt/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Changes to work with DPMTA-2.6


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.2	Fri Sep  5 20:59:35 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/Make.depends,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1048	Fri Sep  5 20:26:11 1997
   Repository revision:	1.1048	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 12, 1997 @ 18:05
Author:	jim

Update of /Projects/l3/cvsroot/namd2/arch
In directory ganymede:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/arch

Modified Files:
	Makearch.HPUX10 
Log Message:
Changed to use latest charm.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.2	Mon Sep  8 15:37:52 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday September 12, 1997 @ 18:05
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ganymede:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeDPMTA.C 
Removed Files:
	BroadcastMgr.html CollectionMaster.html CollectionMgr.html 
	ComputeMgr.html LdbCoordinator.html Node.html PatchMgr.html 
	ProxyMgr.html ReductionMgr.html WorkDistrib.html index.html 
	main.html 
Log Message:
Changes to work with DPMTA-2.6


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1044	Fri Sep 12 23:05:51 1997
   Repository revision:	1.1044	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: no file BroadcastMgr.html		Status: Needs Checkout

   Working revision:	No entry for BroadcastMgr.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Attic/BroadcastMgr.html,v

===================================================================
File: no file CollectionMaster.html		Status: Needs Checkout

   Working revision:	No entry for CollectionMaster.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Attic/CollectionMaster.html,v

===================================================================
File: no file CollectionMgr.html		Status: Needs Checkout

   Working revision:	No entry for CollectionMgr.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Attic/CollectionMgr.html,v

===================================================================
File: no file ComputeMgr.html		Status: Needs Checkout

   Working revision:	No entry for ComputeMgr.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Attic/ComputeMgr.html,v

===================================================================
File: no file LdbCoordinator.html		Status: Needs Checkout

   Working revision:	No entry for LdbCoordinator.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Attic/LdbCoordinator.html,v

===================================================================
File: no file Node.html		Status: Needs Checkout

   Working revision:	No entry for Node.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Attic/Node.html,v

===================================================================
File: no file PatchMgr.html		Status: Needs Checkout

   Working revision:	No entry for PatchMgr.html
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Attic/PatchMgr.html,v

===================================================================
File: no file ProxyMgr.html		Status: Needs Checkout

   Working revision:	No entry for ProxyMgr.html
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Attic/ProxyMgr.html,v

===================================================================
File: no file ReductionMgr.html		Status: Needs Checkout

   Working revision:	No entry for ReductionMgr.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Attic/ReductionMgr.html,v

===================================================================
File: no file WorkDistrib.html		Status: Needs Checkout

   Working revision:	No entry for WorkDistrib.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Attic/WorkDistrib.html,v

===================================================================
File: no file index.html		Status: Needs Checkout

   Working revision:	No entry for index.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Attic/index.html,v

===================================================================
File: no file main.html		Status: Needs Checkout

   Working revision:	No entry for main.html
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Attic/main.html,v


****************************************
Date:	Friday September 12, 1997 @ 18:06
Author:	jim

Update of /Projects/l3/cvsroot/namd2/test
In directory ganymede:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/test

Modified Files:
	alanin 
Log Message:
Eliminated DCD file.


===================================================================
File: alanin           	Status: Up-to-date

   Working revision:	1.1006	Tue Sep  2 19:27:06 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/test/alanin,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Thursday September 18, 1997 @ 16:05
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv28005

Modified Files:
	Output.C 
Log Message:
Made DCD files no update on first timestep, if firstTimestep
is non-zero.



===================================================================
File: no file Output.C		Status: Needs Checkout

   Working revision:	1.8	Thu Sep 18 21:05:12 1997
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday September 18, 1997 @ 17:22
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Output.C 
Log Message:
Cleaned up coordinate ane velocity output code a little.
Won't create restart file on first time step.


===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.9	Thu Sep 18 22:22:21 1997
   Repository revision:	1.9	/Projects/l3/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday September 18, 1997 @ 17:49
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv28271/src

Modified Files:
	ComputeDPMTA.C 
Log Message:
Added code to dump DPMTA input to files.  Define DUMP_DPMTA to enable.


===================================================================
File: no file ComputeDPMTA.C		Status: Needs Checkout

   Working revision:	1.1045	Thu Sep 18 22:49:41 1997
   Repository revision:	1.1045	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Thursday September 18, 1997 @ 21:59
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Added caching of groupcutoff2.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1026	Fri Sep 19 02:59:56 1997
   Repository revision:	1.1026	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 19, 1997 @ 0:17
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h HomePatch.C Patch.C Patch.h 
Log Message:
Cleaned up and tweaked hydrogen-group based temporary pairlist
generation for roughly a 6% performance improvement.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1027	Fri Sep 19 05:17:42 1997
   Repository revision:	1.1027	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1034	Fri Sep 19 05:17:43 1997
   Repository revision:	1.1034	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1015	Fri Sep 19 05:17:44 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1009	Fri Sep 19 05:17:44 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 19, 1997 @ 2:23
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Fixed bug where margin was not extended when user did not specify
a patch splitting method - now adds hGroupCutoff to margin.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1022	Fri Sep 19 07:23:36 1997
   Repository revision:	1.1022	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 19, 1997 @ 3:55
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h HomePatch.C Molecule.C Molecule.h 
	NamdState.C NamdTypes.h Patch.C Sequencer.C SimParameters.C 
	SimParameters.h 
Log Message:
Added rudimentary but relatively efficient fixed atoms.  New options
are fixedatoms, fixedatomsfile, and fixedatomscol (nonzero means fixed).
Energies will be affected, although this can be fixed with a little work.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1028	Fri Sep 19 08:55:30 1997
   Repository revision:	1.1028	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1035	Fri Sep 19 08:55:31 1997
   Repository revision:	1.1035	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1015	Fri Sep 19 08:55:32 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1011	Fri Sep 19 08:55:33 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1008	Fri Sep 19 08:55:34 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1007	Fri Sep 19 08:55:34 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1016	Fri Sep 19 08:55:35 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1033	Fri Sep 19 08:55:36 1997
   Repository revision:	1.1033	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1023	Fri Sep 19 08:55:36 1997
   Repository revision:	1.1023	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1013	Fri Sep 19 08:55:38 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 19, 1997 @ 4:39
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C NamdState.C Sequencer.C 
Log Message:
Small tweaks for fixed atoms.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1026	Fri Sep 19 09:39:04 1997
   Repository revision:	1.1026	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1009	Fri Sep 19 09:39:05 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1034	Fri Sep 19 09:39:06 1997
   Repository revision:	1.1034	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 19, 1997 @ 11:38
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	dcdlib.C 
Log Message:
Switched from int to int32 (defined in common.h) for 64-bit machines.


===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.3	Fri Sep 19 16:38:37 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Sunday September 21, 1997 @ 16:58
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Molecule.C Molecule.h NamdState.C 
Log Message:
Added printing of hydrogen group count.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1016	Sun Sep 21 21:58:30 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1012	Sun Sep 21 21:58:31 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1010	Sun Sep 21 21:58:31 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday September 21, 1997 @ 22:36
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeHomeTuples.C ComputeNonbondedBase.h 
	ComputeNonbondedExcl.C 
Log Message:
Sped up simulations involving fixed atoms.


===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1013	Mon Sep 22 03:36:00 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1029	Mon Sep 22 03:36:01 1997
   Repository revision:	1.1029	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1015	Mon Sep 22 03:36:02 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday September 21, 1997 @ 23:08
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h 
Log Message:
Sped up fixed atom simulations by checking for all atoms fixed.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1030	Mon Sep 22 04:08:03 1997
   Repository revision:	1.1030	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1015	Mon Sep 22 04:08:04 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1014	Mon Sep 22 04:08:05 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 22, 1997 @ 0:14
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Sped up fixed atom simulations with tuned group-cutoff loop.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1031	Mon Sep 22 05:14:03 1997
   Repository revision:	1.1031	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 22, 1997 @ 15:24
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/l2/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	common.h Output.C 
Log Message:
Corrected velocity PDB output by replacing conversion factor of 20 with
conversion for Ang/ps.  This now shoud match XPLOR.



===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1009	Mon Sep 22 20:24:46 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.10	Mon Sep 22 20:24:48 1997
   Repository revision:	1.10	/Projects/l3/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday September 23, 1997 @ 15:07
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/namd.2.0/Programmers/brunner/namd2/src

Modified Files:
	LdbCoordinator.C LdbCoordinator.ci LdbCoordinator.h 
Log Message:
Added Load balance message packing


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.21	Mon Sep 22 21:57:45 1997
   Repository revision:	1.21	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	development-4            	(revision: 1.16)

===================================================================
File: LdbCoordinator.ci	Status: Up-to-date

   Working revision:	1.4	Tue Sep 23 20:07:56 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.ci,v

   Existing Tags:
	development-4            	(revision: 1.2)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.16	Tue Sep 23 20:07:57 1997
   Repository revision:	1.16	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	development-4            	(revision: 1.11)


****************************************
Date:	Tuesday September 23, 1997 @ 15:26
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv14172

Modified Files:
	AlgSeven.C 
Log Message:
A couple of temporary bug fixes


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.7	Tue Sep 23 20:26:35 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	development-4            	(revision: 1.3)


****************************************
Date:	Thursday September 25, 1997 @ 17:52
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/brunner/namd2/src

Modified Files:
	Controller.C LdbCoordinator.C LdbCoordinator.h Rebalancer.C 
Log Message:
I put in a 2-stage load balancing, so first Alg7 is done, then RefineOnly.
I also temporarily made the prints occur at every energy output.



===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1027	Thu Sep 25 22:52:45 1997
   Repository revision:	1.1027	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.22	Thu Sep 25 21:38:56 1997
   Repository revision:	1.22	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	development-4            	(revision: 1.16)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.17	Thu Sep 25 22:52:48 1997
   Repository revision:	1.17	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	development-4            	(revision: 1.11)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.12	Thu Sep 25 22:30:20 1997
   Repository revision:	1.12	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	development-4            	(revision: 1.8)


****************************************
Date:	Sunday September 28, 1997 @ 5:19
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	BroadcastMgr.C BroadcastMgr.h CollectionMgr.C Compute.C 
	Compute.h ComputeHomePatches.C ComputeHomeTuples.C 
	ComputePatch.C ComputePatchPair.C HomePatch.C ProxyPatch.C 
	ReductionMgr.C ReductionMgr.h WorkDistrib.C common.h 
Log Message:
Fixed priorities, ReductionMgr etc.


===================================================================
File: BroadcastMgr.C   	Status: Up-to-date

   Working revision:	1.4	Sun Sep 28 10:19:00 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.C,v

   Existing Tags:
	development-4            	(revision: 1.2)

===================================================================
File: BroadcastMgr.h   	Status: Up-to-date

   Working revision:	1.3	Sun Sep 28 10:19:01 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.h,v

   Existing Tags:
	development-4            	(revision: 1.2)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1007	Sun Sep 28 10:19:02 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1014	Sun Sep 28 10:19:03 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1009	Sun Sep 28 10:19:04 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.1005	Sun Sep 28 10:19:04 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.C,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1014	Sun Sep 28 10:19:05 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1010	Sun Sep 28 10:19:05 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1013	Sun Sep 28 10:19:06 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1036	Sun Sep 28 10:19:07 1997
   Repository revision:	1.1036	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1016	Sun Sep 28 10:19:07 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1020	Sun Sep 28 10:19:08 1997
   Repository revision:	1.1020	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1006	Sun Sep 28 10:19:09 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1034	Sun Sep 28 10:19:10 1997
   Repository revision:	1.1034	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1010	Sun Sep 28 10:19:11 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday September 28, 1997 @ 5:19
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2/src/Templates

Modified Files:
	Box.C Box.h OwnerBox.C OwnerBox.h ResizeArray.C ResizeArray.h 
	ResizeArrayIter.h ResizeArrayPrimIter.h ResizeArrayRaw.h 
	SortableResizeArray.C SortableResizeArray.h SortedArray.C 
	SortedArray.h UniqueSet.h UniqueSetIter.h UniqueSetRaw.C 
	UniqueSetRaw.h 
Log Message:
Made templates to compile okay under the debug conditions.


===================================================================
File: Box.C            	Status: Up-to-date

   Working revision:	1.1002	Sun Sep 28 04:47:16 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Templates/Box.C,v

   Existing Tags:
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)
	development-0            	(revision: 1.1)

===================================================================
File: Box.h            	Status: Up-to-date

   Working revision:	1.1002	Sun Sep 28 04:50:07 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Templates/Box.h,v

   Existing Tags:
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)
	development-0            	(revision: 1.1)

===================================================================
File: OwnerBox.C       	Status: Up-to-date

   Working revision:	1.1002	Sun Sep 28 04:47:54 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Templates/OwnerBox.C,v

   Existing Tags:
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: OwnerBox.h       	Status: Up-to-date

   Working revision:	1.1003	Sun Sep 28 04:50:45 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Templates/OwnerBox.h,v

   Existing Tags:
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)
	development-0            	(revision: 1.1)

===================================================================
File: ResizeArray.C    	Status: Up-to-date

   Working revision:	1.1006	Sun Sep 28 10:19:39 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.C,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.1006	Sun Sep 28 10:19:39 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.h,v

   Existing Tags:
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArrayIter.h	Status: Up-to-date

   Working revision:	1.1003	Sun Sep 28 04:51:52 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayIter.h,v

   Existing Tags:
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArrayPrimIter.h	Status: Up-to-date

   Working revision:	1.1002	Sun Sep 28 04:52:19 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayPrimIter.h,v

   Existing Tags:
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.6	Sun Sep 28 10:19:41 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArrayRaw.h,v

   Existing Tags:
	development-4            	(revision: 1.4)

===================================================================
File: SortableResizeArray.C	Status: Up-to-date

   Working revision:	1.1003	Sat Sep 27 07:59:41 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.C,v

   Existing Tags:
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortableResizeArray.h	Status: Up-to-date

   Working revision:	1.1005	Sun Sep 28 04:53:34 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Templates/SortableResizeArray.h,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortedArray.C    	Status: Up-to-date

   Working revision:	1.1002	Sat Sep 27 07:59:53 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Templates/SortedArray.C,v

   Existing Tags:
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortedArray.h    	Status: Up-to-date

   Working revision:	1.1004	Sun Sep 28 04:53:55 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Templates/SortedArray.h,v

   Existing Tags:
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: UniqueSet.h      	Status: Up-to-date

   Working revision:	1.4	Sun Sep 28 10:19:44 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSet.h,v

   Existing Tags:
	development-4            	(revision: 1.2)

===================================================================
File: UniqueSetIter.h  	Status: Up-to-date

   Working revision:	1.4	Sun Sep 28 10:19:45 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetIter.h,v

   Existing Tags:
	development-4            	(revision: 1.2)

===================================================================
File: UniqueSetRaw.C   	Status: Up-to-date

   Working revision:	1.6	Sun Sep 28 10:19:45 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetRaw.C,v

   Existing Tags:
	development-4            	(revision: 1.3)

===================================================================
File: UniqueSetRaw.h   	Status: Up-to-date

   Working revision:	1.7	Sun Sep 28 10:19:46 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/Templates/UniqueSetRaw.h,v

   Existing Tags:
	development-4            	(revision: 1.4)


****************************************
Date:	Sunday September 28, 1997 @ 5:23
Author:	milind

Update of /Projects/l3/cvsroot/namd2
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Fixed Makefiles to include arch params from a single file.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.3	Sat Sep 27 08:39:13 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/Make.depends,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1049	Sat Sep 27 08:59:59 1997
   Repository revision:	1.1049	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday September 28, 1997 @ 5:23
Author:	milind

Update of /Projects/l3/cvsroot/namd2/arch
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2/arch

Modified Files:
	Makearch.HPUX10 Makearch.HPUX9 Makearch.Origin2000 
	Makearch.SP3 Makearch.Solaris Makearch.T3E Makearch.g++ 
	Makearch.template 
Log Message:
Fixed Makefiles to include arch params from a single file.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.3	Sat Sep 27 09:00:10 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.HPUX9   	Status: Up-to-date

   Working revision:	1.2	Fri Sep 26 16:32:03 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/arch/Makearch.HPUX9,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.2	Fri Sep 26 16:05:24 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.SP3     	Status: Up-to-date

   Working revision:	1.2	Fri Sep 26 16:32:42 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/arch/Makearch.SP3,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.2	Fri Sep 26 16:33:01 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.3	Fri Sep 26 16:33:22 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.g++     	Status: Up-to-date

   Working revision:	1.2	Fri Sep 26 16:33:47 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/arch/Makearch.g++,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.template	Status: Up-to-date

   Working revision:	1.2	Fri Sep 26 16:34:05 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/arch/Makearch.template,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday September 28, 1997 @ 5:23
Author:	milind

Update of /Projects/l3/cvsroot/namd2/dpme2
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2/dpme2

Modified Files:
	Makefile 
Log Message:
Fixed Makefiles to include arch params from a single file.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.6	Fri Sep 26 15:43:37 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	development-4            	(revision: 1.5)


****************************************
Date:	Sunday September 28, 1997 @ 5:24
Author:	milind

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2/dpmta-2.6

Modified Files:
	Makefile 
Log Message:
Fixed Makefiles to include arch params from a single file.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.3	Sun Sep 28 10:23:59 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/Makefile,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday September 28, 1997 @ 5:24
Author:	milind

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/mpole
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2/dpmta-2.6/mpole

Modified Files:
	Makefile 
Log Message:
Fixed Makefiles to include arch params from a single file.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.3	Sun Sep 28 10:24:03 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/Makefile,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday September 28, 1997 @ 5:24
Author:	milind

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/src
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2/dpmta-2.6/src

Modified Files:
	Makefile Makefile.converse dpmta_mastiter.c 
Log Message:
Fixed Makefiles to include arch params from a single file.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.2	Sun Sep 28 10:24:07 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile.converse	Status: Up-to-date

   Working revision:	1.2	Sun Sep 28 10:24:07 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/Makefile.converse,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastiter.c 	Status: Up-to-date

   Working revision:	1.3	Sun Sep 28 10:24:08 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_mastiter.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday September 28, 1997 @ 5:24
Author:	milind

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2/pvm3

Modified Files:
	Makefile 
Log Message:
Fixed Makefiles to include arch params from a single file.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.12	Fri Sep 26 16:17:00 1997
   Repository revision:	1.12	/Projects/l3/cvsroot/namd2/pvm3/Makefile,v

   Existing Tags:
	development-4            	(revision: 1.11)
	development-3            	(revision: 1.1)


****************************************
Date:	Sunday September 28, 1997 @ 5:28
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2/src

Removed Files:
	Priorities.C Priorities.h 
Log Message:
Removed elaborate Priority Scheme.


===================================================================
File: no file Priorities.C		Status: Needs Checkout

   Working revision:	No entry for Priorities.C
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Attic/Priorities.C,v

===================================================================
File: no file Priorities.h		Status: Needs Checkout

   Working revision:	No entry for Priorities.h
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/Attic/Priorities.h,v


****************************************
Date:	Sunday September 28, 1997 @ 17:36
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeAngles.C ComputeBonds.C ComputeDihedrals.C 
	ComputeHomeTuples.C ComputeHomeTuples.h ComputeImpropers.C 
	ComputeNonbondedExcl.C ComputeNonbondedExcl.h PatchMap.C 
	PatchMap.h ProxyMgr.C 
Log Message:
Modified tuple-based computations to not duplicate calculations and
only require "upstream" proxies.


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1006	Sun Sep 28 22:36:47 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1006	Sun Sep 28 22:36:48 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1007	Sun Sep 28 22:36:48 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1015	Sun Sep 28 22:36:49 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1009	Sun Sep 28 22:36:50 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1006	Sun Sep 28 22:36:50 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1016	Sun Sep 28 22:36:51 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.1004	Sun Sep 28 22:36:51 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.h,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1012	Sun Sep 28 22:36:52 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1006	Sun Sep 28 22:36:53 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1015	Sun Sep 28 22:36:53 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 29, 1997 @ 18:55
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta-2.6

Added Files:
	README 
Log Message:
New README from 2.6.1


===================================================================
File: README           	Status: Up-to-date

   Working revision:	1.1	Mon Sep 29 23:55:45 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/README,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday September 29, 1997 @ 18:57
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/mpole
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta-2.6/mpole

Modified Files:
	mpe.h mpe_misc.c mpe_mpoleC.c 
Log Message:
Incorporated changes from version 2.6.1 of DPMTA.
  - fixes for bad handling of empty/invalid multipoles when
    using large processor sets.
  - moved functions that provide data mapping to processors.  master
    and slave routines now call the same function in dpmta_distmisc.c


===================================================================
File: mpe.h            	Status: Up-to-date

   Working revision:	1.2	Mon Sep 29 23:57:45 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/mpe.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_misc.c       	Status: Up-to-date

   Working revision:	1.2	Mon Sep 29 23:57:45 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/mpe_misc.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mpe_mpoleC.c     	Status: Up-to-date

   Working revision:	1.2	Mon Sep 29 23:57:46 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/mpe_mpoleC.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday September 29, 1997 @ 18:58
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta-2.6/src

Modified Files:
	Makefile Makefile.converse Makefile.cray Makefile.serial 
	dpmta_direct.c dpmta_mastiface.c dpmta_mastinit.c 
	dpmta_mastiter.c dpmta_slave.c dpmta_slvcomm.c 
	dpmta_slvmacro.c dpmta_slvmcalc.c dpmta_slvmkcell.c 
	dpmta_slvmkiil.c dpmta_t3dlib.c dpmta_test.c dpmta_test2.c 
	dpmta_test2b.c dpmta_test3.c dpmta_test4.c dpmta_test5.c 
	dpmta_timer.c dpmta_version.h 
Added Files:
	dpmta_distmisc.c 
Removed Files:
	dpmta_slvmisc.c 
Log Message:
Incorporated changes from version 2.6.1 of DPMTA.
  - fixes for bad handling of empty/invalid multipoles when
    using large processor sets.
  - moved functions that provide data mapping to processors.  master
    and slave routines now call the same function in dpmta_distmisc.c
Also, switched pvmc.h back to pvm3.h.


===================================================================
File: dpmta_distmisc.c 	Status: Up-to-date

   Working revision:	1.1	Mon Sep 29 23:58:36 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_distmisc.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:33 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile.converse	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:33 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/Makefile.converse,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile.cray    	Status: Up-to-date

   Working revision:	1.2	Mon Sep 29 23:58:34 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/Makefile.cray,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile.serial  	Status: Up-to-date

   Working revision:	1.2	Mon Sep 29 23:58:35 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/Makefile.serial,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_direct.c   	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:35 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_direct.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastiface.c	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:37 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_mastiface.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastinit.c 	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:37 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_mastinit.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_mastiter.c 	Status: Up-to-date

   Working revision:	1.4	Mon Sep 29 23:58:38 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_mastiter.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slave.c    	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:38 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slave.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvcomm.c  	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:39 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvcomm.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmacro.c 	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:40 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvmacro.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmcalc.c 	Status: Up-to-date

   Working revision:	1.2	Mon Sep 29 23:58:41 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvmcalc.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkcell.c	Status: Up-to-date

   Working revision:	1.2	Mon Sep 29 23:58:42 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvmkcell.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_slvmkiil.c 	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:43 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvmkiil.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_t3dlib.c   	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:43 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_t3dlib.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test.c     	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:44 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test2.c    	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:44 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test2.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test2b.c   	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:45 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test2b.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test3.c    	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:46 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test3.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test4.c    	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:46 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test4.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_test5.c    	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:47 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_test5.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_timer.c    	Status: Up-to-date

   Working revision:	1.3	Mon Sep 29 23:58:47 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_timer.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta_version.h  	Status: Up-to-date

   Working revision:	1.2	Mon Sep 29 23:58:48 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_version.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file dpmta_slvmisc.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmisc.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/Attic/dpmta_slvmisc.c,v


****************************************
Date:	Monday September 29, 1997 @ 19:48
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta-2.6/src

Modified Files:
	dpmta_slvcomm.c 
Log Message:
One last fix for 2.6.1.


===================================================================
File: dpmta_slvcomm.c  	Status: Up-to-date

   Working revision:	1.4	Tue Sep 30 00:47:59 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta_slvcomm.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday September 29, 1997 @ 21:59
Author:	jim

Update of /Projects/l3/cvsroot/namd2/test
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/test

Modified Files:
	brH 
Log Message:
No dcd file.


===================================================================
File: brH              	Status: Up-to-date

   Working revision:	1.1016	Fri Sep 19 02:28:17 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/test/brH,v

   Existing Tags:
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)


****************************************
Date:	Monday September 29, 1997 @ 22:04
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta2

Removed Files:
	Makefile README 
Log Message:
Obsolete version.


===================================================================
File: no file Makefile		Status: Needs Checkout

   Working revision:	No entry for Makefile
   Repository revision:	1.9	/Projects/l3/cvsroot/namd2/dpmta2/Attic/Makefile,v

===================================================================
File: no file README		Status: Needs Checkout

   Working revision:	No entry for README
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/Attic/README,v


****************************************
Date:	Monday September 29, 1997 @ 22:04
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta2/include
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta2/include

Removed Files:
	dpmta.h dpmta_cell.h dpmta_pvm.h dpmta_slave.h dpmta_slvmkil.h 
	dpmta_timer.h dpmta_version.h fpvm3.h pvm3.h pvmsdpro.h 
	pvmtev.h 
Log Message:
Obsolete version.


===================================================================
File: no file dpmta.h		Status: Needs Checkout

   Working revision:	No entry for dpmta.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/include/Attic/dpmta.h,v

===================================================================
File: no file dpmta_cell.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_cell.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/include/Attic/dpmta_cell.h,v

===================================================================
File: no file dpmta_pvm.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_pvm.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/include/Attic/dpmta_pvm.h,v

===================================================================
File: no file dpmta_slave.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_slave.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/include/Attic/dpmta_slave.h,v

===================================================================
File: no file dpmta_slvmkil.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmkil.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/include/Attic/dpmta_slvmkil.h,v

===================================================================
File: no file dpmta_timer.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_timer.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/include/Attic/dpmta_timer.h,v

===================================================================
File: no file dpmta_version.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_version.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/include/Attic/dpmta_version.h,v

===================================================================
File: no file fpvm3.h		Status: Needs Checkout

   Working revision:	No entry for fpvm3.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/include/Attic/fpvm3.h,v

===================================================================
File: no file pvm3.h		Status: Needs Checkout

   Working revision:	No entry for pvm3.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/include/Attic/pvm3.h,v

===================================================================
File: no file pvmsdpro.h		Status: Needs Checkout

   Working revision:	No entry for pvmsdpro.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/include/Attic/pvmsdpro.h,v

===================================================================
File: no file pvmtev.h		Status: Needs Checkout

   Working revision:	No entry for pvmtev.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/include/Attic/pvmtev.h,v


****************************************
Date:	Monday September 29, 1997 @ 22:04
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta2/mpole
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta2/mpole

Removed Files:
	Makefile Makefile~ mpe.h mpe_fft.c mpe_fftC.h mpe_legendre.h 
	mpe_misc.c mpe_mpoleC.c mpe_mpoleLJ.c mpe_testC.c mpe_testLJ.c 
Log Message:
Obsolete version.


===================================================================
File: no file Makefile		Status: Needs Checkout

   Working revision:	No entry for Makefile
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Attic/Makefile,v

===================================================================
File: no file Makefile~		Status: Needs Checkout

   Working revision:	No entry for Makefile~
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Attic/Makefile~,v

===================================================================
File: no file mpe.h		Status: Needs Checkout

   Working revision:	No entry for mpe.h
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Attic/mpe.h,v

===================================================================
File: no file mpe_fft.c		Status: Needs Checkout

   Working revision:	No entry for mpe_fft.c
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Attic/mpe_fft.c,v

===================================================================
File: no file mpe_fftC.h		Status: Needs Checkout

   Working revision:	No entry for mpe_fftC.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Attic/mpe_fftC.h,v

===================================================================
File: no file mpe_legendre.h		Status: Needs Checkout

   Working revision:	No entry for mpe_legendre.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Attic/mpe_legendre.h,v

===================================================================
File: no file mpe_misc.c		Status: Needs Checkout

   Working revision:	No entry for mpe_misc.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Attic/mpe_misc.c,v

===================================================================
File: no file mpe_mpoleC.c		Status: Needs Checkout

   Working revision:	No entry for mpe_mpoleC.c
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Attic/mpe_mpoleC.c,v

===================================================================
File: no file mpe_mpoleLJ.c		Status: Needs Checkout

   Working revision:	No entry for mpe_mpoleLJ.c
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Attic/mpe_mpoleLJ.c,v

===================================================================
File: no file mpe_testC.c		Status: Needs Checkout

   Working revision:	No entry for mpe_testC.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Attic/mpe_testC.c,v

===================================================================
File: no file mpe_testLJ.c		Status: Needs Checkout

   Working revision:	No entry for mpe_testLJ.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/mpole/Attic/mpe_testLJ.c,v


****************************************
Date:	Monday September 29, 1997 @ 22:05
Author:	jim

Update of /Projects/l3/cvsroot/namd2/dpmta2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpmta2/src

Removed Files:
	Makefile Makefile.HPLIB Makefile.cray Makefile~ README dpmta.h 
	dpmta_cell.h dpmta_direct.c dpmta_error.c dpmta_mastiface.c 
	dpmta_mastinit.c dpmta_mastiter.c dpmta_pvm.h dpmta_slave.c 
	dpmta_slave.h dpmta_slvclean.c dpmta_slvcomm.c 
	dpmta_slvcompute.c dpmta_slvmacro.c dpmta_slvmcalc.c 
	dpmta_slvmisc.c dpmta_slvmkcell.c dpmta_slvmkhl.c 
	dpmta_slvmkiil.c dpmta_slvmkil.c dpmta_slvmkil.h 
	dpmta_slvpcalc.c dpmta_slvscale.c dpmta_slvstart.c 
	dpmta_t3dlib.c dpmta_test.c dpmta_test2.c dpmta_test2b.c 
	dpmta_test3.c dpmta_test4.c dpmta_test5.c dpmta_testdump.c 
	dpmta_timer.h dpmta_version.h 
Log Message:
Obsolete version.


===================================================================
File: no file Makefile		Status: Needs Checkout

   Working revision:	No entry for Makefile
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/Makefile,v

===================================================================
File: no file Makefile.HPLIB		Status: Needs Checkout

   Working revision:	No entry for Makefile.HPLIB
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/Makefile.HPLIB,v

===================================================================
File: no file Makefile.cray		Status: Needs Checkout

   Working revision:	No entry for Makefile.cray
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/Makefile.cray,v

===================================================================
File: no file Makefile~		Status: Needs Checkout

   Working revision:	No entry for Makefile~
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/Makefile~,v

===================================================================
File: no file README		Status: Needs Checkout

   Working revision:	No entry for README
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/README,v

===================================================================
File: no file dpmta.h		Status: Needs Checkout

   Working revision:	No entry for dpmta.h
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta.h,v

===================================================================
File: no file dpmta_cell.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_cell.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_cell.h,v

===================================================================
File: no file dpmta_direct.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_direct.c
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_direct.c,v

===================================================================
File: no file dpmta_error.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_error.c
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_error.c,v

===================================================================
File: no file dpmta_mastiface.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_mastiface.c
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_mastiface.c,v

===================================================================
File: no file dpmta_mastinit.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_mastinit.c
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_mastinit.c,v

===================================================================
File: no file dpmta_mastiter.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_mastiter.c
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_mastiter.c,v

===================================================================
File: no file dpmta_pvm.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_pvm.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_pvm.h,v

===================================================================
File: no file dpmta_slave.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slave.c
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slave.c,v

===================================================================
File: no file dpmta_slave.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_slave.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slave.h,v

===================================================================
File: no file dpmta_slvclean.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvclean.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slvclean.c,v

===================================================================
File: no file dpmta_slvcomm.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvcomm.c
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slvcomm.c,v

===================================================================
File: no file dpmta_slvcompute.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvcompute.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slvcompute.c,v

===================================================================
File: no file dpmta_slvmacro.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmacro.c
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slvmacro.c,v

===================================================================
File: no file dpmta_slvmcalc.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmcalc.c
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slvmcalc.c,v

===================================================================
File: no file dpmta_slvmisc.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmisc.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slvmisc.c,v

===================================================================
File: no file dpmta_slvmkcell.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmkcell.c
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slvmkcell.c,v

===================================================================
File: no file dpmta_slvmkhl.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmkhl.c
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slvmkhl.c,v

===================================================================
File: no file dpmta_slvmkiil.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmkiil.c
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slvmkiil.c,v

===================================================================
File: no file dpmta_slvmkil.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmkil.c
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slvmkil.c,v

===================================================================
File: no file dpmta_slvmkil.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvmkil.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slvmkil.h,v

===================================================================
File: no file dpmta_slvpcalc.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvpcalc.c
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slvpcalc.c,v

===================================================================
File: no file dpmta_slvscale.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvscale.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slvscale.c,v

===================================================================
File: no file dpmta_slvstart.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_slvstart.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_slvstart.c,v

===================================================================
File: no file dpmta_t3dlib.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_t3dlib.c
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_t3dlib.c,v

===================================================================
File: no file dpmta_test.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_test.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_test.c,v

===================================================================
File: no file dpmta_test2.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_test2.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_test2.c,v

===================================================================
File: no file dpmta_test2b.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_test2b.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_test2b.c,v

===================================================================
File: no file dpmta_test3.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_test3.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_test3.c,v

===================================================================
File: no file dpmta_test4.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_test4.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_test4.c,v

===================================================================
File: no file dpmta_test5.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_test5.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_test5.c,v

===================================================================
File: no file dpmta_testdump.c		Status: Needs Checkout

   Working revision:	No entry for dpmta_testdump.c
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_testdump.c,v

===================================================================
File: no file dpmta_timer.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_timer.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_timer.h,v

===================================================================
File: no file dpmta_version.h		Status: Needs Checkout

   Working revision:	No entry for dpmta_version.h
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta2/src/Attic/dpmta_version.h,v


****************************************
Date:	Tuesday September 30, 1997 @ 11:22
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv20588

Modified Files:
	WorkDistrib.C 
Log Message:
Reduced static arrays to allows only 1-away computes to decrease mem usage.


===================================================================
File: no file WorkDistrib.C		Status: Needs Checkout

   Working revision:	1.1035	Tue Sep 30 16:22:19 1997
   Repository revision:	1.1035	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday September 30, 1997 @ 11:23
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv20626

Modified Files:
	LdbCoordinator.C 
Log Message:
Hard-coded in upstream-neighbors only for load calculations.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.23	Tue Sep 30 16:23:38 1997
   Repository revision:	1.23	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	development-4            	(revision: 1.16)


****************************************
Date:	Tuesday September 30, 1997 @ 11:57
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeHomeTuples.C ComputeNonbondedExcl.C PatchMap.C 
Log Message:
Fixed bug dealing with atoms on unknown patches.


===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1016	Tue Sep 30 16:57:42 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1017	Tue Sep 30 16:57:44 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1013	Tue Sep 30 16:57:45 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday September 30, 1997 @ 16:40
Author:	brunner

Update of /Projects/l3/cvsroot/namd2
In directory hamlet:/tmp/cvs-serv26268

Modified Files:
	Makefile 
Log Message:
Added a make projections target, and removed CYCLE_BARRRIER flag on T3E


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1050	Tue Sep 30 21:40:56 1997
   Repository revision:	1.1050	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday September 30, 1997 @ 16:41
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/arch
In directory hamlet:/tmp/cvs-serv26268/arch

Modified Files:
	Makearch.T3E 
Log Message:
Added a make projections target, and removed CYCLE_BARRRIER flag on T3E


===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.4	Tue Sep 30 21:40:56 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday October 1, 1997 @ 11:45
Author:	milind

Update of /Projects/l3/cvsroot/namd2
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Modified to enbale linking without DPMTA.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.4	Wed Oct  1 15:50:00 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/Make.depends,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1051	Wed Oct  1 16:39:35 1997
   Repository revision:	1.1051	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 1, 1997 @ 11:46
Author:	milind

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/src
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2/dpmta-2.6/src

Modified Files:
	Makefile.cray 
Log Message:
Modified to enbale linking without DPMTA.


===================================================================
File: Makefile.cray    	Status: Up-to-date

   Working revision:	1.3	Wed Oct  1 16:46:09 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/Makefile.cray,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday October 1, 1997 @ 11:47
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	Communicate.C Communicate.h ComputeDPMTA.C ComputeMgr.C 
	HBondParam.C HBondParam.h Molecule.C Molecule.h Node.C 
	Output.C Parameters.C Parameters.h SimParameters.C 
	SimParameters.h main.C 
Added Files:
	MStream.C MStream.h 
Removed Files:
	CommunicateConverse.C CommunicateConverse.h CommunicatePVM.C 
	CommunicatePVM.h Message.C Message.h MessageManager.C 
	MessageManager.h MessageQueue.C MessageQueue.h 
Log Message:
Removed old NAMD1 messaging and replaced it with new Message Streams library.


===================================================================
File: MStream.C        	Status: Up-to-date

   Working revision:	1.1	Tue Sep 30 22:02:14 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/MStream.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: MStream.h        	Status: Up-to-date

   Working revision:	1.1	Wed Oct  1 14:36:06 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/MStream.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Communicate.C    	Status: Up-to-date

   Working revision:	1.1003	Tue Sep 30 21:47:18 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Communicate.C,v

   Existing Tags:
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Communicate.h    	Status: Up-to-date

   Working revision:	1.1003	Tue Sep 30 21:28:28 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Communicate.h,v

   Existing Tags:
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1046	Wed Oct  1 16:46:47 1997
   Repository revision:	1.1046	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1014	Wed Oct  1 16:46:48 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HBondParam.C     	Status: Up-to-date

   Working revision:	1.1002	Wed Oct  1 16:46:49 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/HBondParam.C,v

   Existing Tags:
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: HBondParam.h     	Status: Up-to-date

   Working revision:	1.1002	Wed Oct  1 16:46:49 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/HBondParam.h,v

   Existing Tags:
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1017	Wed Oct  1 16:46:56 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1013	Wed Oct  1 16:46:57 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1017	Wed Oct  1 16:46:58 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.11	Wed Oct  1 16:46:59 1997
   Repository revision:	1.11	/Projects/l3/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1005	Wed Oct  1 16:47:00 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.1002	Wed Oct  1 16:47:01 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Parameters.h,v

   Existing Tags:
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1024	Wed Oct  1 16:47:02 1997
   Repository revision:	1.1024	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1014	Wed Oct  1 16:47:03 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1004	Wed Oct  1 16:47:04 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/main.C,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file CommunicateConverse.C		Status: Needs Checkout

   Working revision:	No entry for CommunicateConverse.C
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Attic/CommunicateConverse.C,v

===================================================================
File: no file CommunicateConverse.h		Status: Needs Checkout

   Working revision:	No entry for CommunicateConverse.h
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Attic/CommunicateConverse.h,v

===================================================================
File: no file CommunicatePVM.C		Status: Needs Checkout

   Working revision:	No entry for CommunicatePVM.C
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Attic/CommunicatePVM.C,v

===================================================================
File: no file CommunicatePVM.h		Status: Needs Checkout

   Working revision:	No entry for CommunicatePVM.h
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Attic/CommunicatePVM.h,v

===================================================================
File: no file Message.C		Status: Needs Checkout

   Working revision:	No entry for Message.C
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Attic/Message.C,v

===================================================================
File: no file Message.h		Status: Needs Checkout

   Working revision:	No entry for Message.h
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Attic/Message.h,v

===================================================================
File: no file MessageManager.C		Status: Needs Checkout

   Working revision:	No entry for MessageManager.C
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Attic/MessageManager.C,v

===================================================================
File: no file MessageManager.h		Status: Needs Checkout

   Working revision:	No entry for MessageManager.h
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Attic/MessageManager.h,v

===================================================================
File: no file MessageQueue.C		Status: Needs Checkout

   Working revision:	No entry for MessageQueue.C
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Attic/MessageQueue.C,v

===================================================================
File: no file MessageQueue.h		Status: Needs Checkout

   Working revision:	No entry for MessageQueue.h
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Attic/MessageQueue.h,v


****************************************
Date:	Thursday October 2, 1997 @ 17:01
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeHomeTuples.C ComputeHomeTuples.h 
Log Message:
Moved loadTuples() out of recvProxyAll entry point and into enqueueWork.


===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1017	Thu Oct  2 22:01:20 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1010	Thu Oct  2 22:01:21 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday October 5, 1997 @ 19:11
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.depends 
Log Message:
Added PatchMap.inl.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.5	Fri Oct  3 20:31:43 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/Make.depends,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday October 5, 1997 @ 19:12
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeHomeTuples.C ComputeNonbondedExcl.C 
	ComputePatch.C ComputePatchPair.C HomePatch.C LdbCoordinator.C 
	PatchMap.C PatchMap.h ProxyMgr.C RecBisection.C WorkDistrib.C 
Added Files:
	PatchMap.inl 
Log Message:
Added PatchMap.inl, sped up cycle-boundary tuple code.


===================================================================
File: PatchMap.inl     	Status: Up-to-date

   Working revision:	1.1	Mon Oct  6 00:12:34 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/PatchMap.inl,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1047	Mon Oct  6 00:12:28 1997
   Repository revision:	1.1047	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1018	Mon Oct  6 00:12:28 1997
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1018	Mon Oct  6 00:12:29 1997
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1011	Mon Oct  6 00:12:30 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1014	Mon Oct  6 00:12:30 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1037	Mon Oct  6 00:12:31 1997
   Repository revision:	1.1037	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.24	Sun Oct  5 22:17:06 1997
   Repository revision:	1.24	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	development-4            	(revision: 1.16)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1014	Mon Oct  6 00:12:33 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1007	Mon Oct  6 00:12:33 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1016	Mon Oct  6 00:12:35 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: RecBisection.C   	Status: Up-to-date

   Working revision:	1.3	Mon Oct  6 00:12:36 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/RecBisection.C,v

   Existing Tags:
	development-4            	(revision: 1.2)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1036	Mon Oct  6 00:12:36 1997
   Repository revision:	1.1036	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 15, 1997 @ 17:03
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Scr/s1/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Bug fix:  Fixed atoms parameter not propagated to other nodes.



===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1025	Wed Oct 15 22:03:24 1997
   Repository revision:	1.1025	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday October 16, 1997 @ 16:10
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/mpole
In directory ophelia:/tmp_mnt/Scr/s1/namd2/dpmta-2.6/mpole

Modified Files:
	mpe.h 
Log Message:

Possible fix for the Origin2000 problem with DPMTA.  I included
stdlib.h in dpmta.h and mpe.h, to supply the correct declaration for
malloc, realloc, etc.  Initial tests indicate that it works on the
Origin 2000, so since these are harmless changes, I'm checking them
in.



===================================================================
File: mpe.h            	Status: Up-to-date

   Working revision:	1.3	Thu Oct 16 21:10:10 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/dpmta-2.6/mpole/mpe.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday October 16, 1997 @ 16:10
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/src
In directory ophelia:/tmp_mnt/Scr/s1/namd2/dpmta-2.6/src

Modified Files:
	dpmta.h 
Log Message:

Possible fix for the Origin2000 problem with DPMTA.  I included
stdlib.h in dpmta.h and mpe.h, to supply the correct declaration for
malloc, realloc, etc.  Initial tests indicate that it works on the
Origin 2000, so since these are harmless changes, I'm checking them
in.



===================================================================
File: dpmta.h          	Status: Up-to-date

   Working revision:	1.2	Thu Oct 16 21:10:37 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/dpmta.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday October 16, 1997 @ 16:11
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Scr/s1/namd2/src

Modified Files:
	MStream.C 
Log Message:

Switched order of include files, so that Origin 2K would compile.



===================================================================
File: MStream.C        	Status: Up-to-date

   Working revision:	1.2	Thu Oct 16 20:20:24 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/MStream.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday October 17, 1997 @ 12:16
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeAngles.C ComputeAngles.h ComputeBonds.C ComputeBonds.h 
	ComputeDihedrals.C ComputeDihedrals.h ComputeHomeTuples.C 
	ComputeHomeTuples.h ComputeImpropers.C ComputeImpropers.h 
	ComputeNonbondedExcl.C ComputeNonbondedExcl.h Molecule.h 
Log Message:
Switched from hash tables to checklists, eliminated special exclusion code.


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1007	Fri Oct 17 17:16:42 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1006	Fri Oct 17 17:16:43 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1007	Fri Oct 17 17:16:44 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1004	Fri Oct 17 17:16:44 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1008	Fri Oct 17 17:16:45 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1003	Fri Oct 17 17:16:45 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1019	Fri Oct 17 17:16:46 1997
   Repository revision:	1.1019	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1011	Fri Oct 17 17:16:47 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1007	Fri Oct 17 17:16:47 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1003	Fri Oct 17 17:16:48 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1019	Fri Oct 17 17:16:49 1997
   Repository revision:	1.1019	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.1005	Fri Oct 17 17:16:49 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.h,v

   Existing Tags:
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1014	Fri Oct 17 17:16:50 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday October 17, 1997 @ 15:26
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeHomeTuples.C 
Log Message:
Sped up tuples, but slowed down fixed atom code.
There is a much more efficient way of doing fixed atoms that can
be included later.


===================================================================
File: ComputeHomeTuples.C	Status: Up-to-date

   Working revision:	1.1020	Fri Oct 17 20:26:31 1997
   Repository revision:	1.1020	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday November 7, 1997 @ 14:17
Author:	milind

Update of /Projects/l3/cvsroot/namd2
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Made NAMD to run on shared memory machines.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.6	Fri Nov  7 19:30:26 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1052	Fri Nov  7 19:19:29 1997
   Repository revision:	1.1052	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday November 7, 1997 @ 14:17
Author:	milind

Update of /Projects/l3/cvsroot/namd2/arch
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/arch

Modified Files:
	Makearch.HPUX10 
Log Message:
Made NAMD to run on shared memory machines.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.4	Wed Nov  5 18:41:53 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Friday November 7, 1997 @ 14:17
Author:	milind

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/pvm3

Modified Files:
	pvmc_groups.c 
Log Message:
Made NAMD to run on shared memory machines.


===================================================================
File: pvmc_groups.c    	Status: Up-to-date

   Working revision:	1.2	Wed Nov  5 16:43:56 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/pvm3/pvmc_groups.c,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)


****************************************
Date:	Friday November 7, 1997 @ 14:17
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	AtomMap.C AtomMap.h BOCgroup.h BroadcastMgr.C BroadcastMgr.h 
	CollectionMaster.C CollectionMaster.h CollectionMgr.C 
	CollectionMgr.h ComputeMap.C ComputeMap.h ComputeMgr.C 
	LJTable.C LJTable.h LdbCoordinator.C LdbCoordinator.h Node.C 
	Node.h PatchMap.C PatchMap.h PatchMgr.C PatchMgr.h ProxyMgr.C 
	ProxyMgr.h ReductionMgr.C ReductionMgr.h Thread.h 
	WorkDistrib.C main.C 
Added Files:
	defmain.C 
Log Message:
Made NAMD to run on shared memory machines.


===================================================================
File: defmain.C        	Status: Up-to-date

   Working revision:	1.1	Fri Nov  7 19:17:09 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/defmain.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1008	Fri Nov  7 20:17:30 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/AtomMap.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: AtomMap.h        	Status: Up-to-date

   Working revision:	1.1005	Fri Nov  7 20:17:30 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/AtomMap.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.1003	Fri Nov  7 20:17:31 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/BOCgroup.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BroadcastMgr.C   	Status: Up-to-date

   Working revision:	1.5	Fri Nov  7 20:17:32 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.2)

===================================================================
File: BroadcastMgr.h   	Status: Up-to-date

   Working revision:	1.4	Fri Nov  7 20:17:33 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)

===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1009	Fri Nov  7 20:17:33 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1008	Fri Nov  7 20:17:34 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1008	Fri Nov  7 20:17:35 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1005	Fri Nov  7 20:17:35 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1014	Fri Nov  7 20:17:36 1997
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1013)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1010	Fri Nov  7 20:17:37 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1015	Fri Nov  7 20:17:38 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.1005	Fri Nov  7 20:17:38 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/LJTable.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.h        	Status: Up-to-date

   Working revision:	1.1002	Fri Nov  7 20:17:39 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/LJTable.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.25	Fri Nov  7 18:33:44 1997
   Repository revision:	1.25	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.18	Fri Nov  7 20:17:41 1997
   Repository revision:	1.18	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1018	Fri Nov  7 20:17:42 1997
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1009	Fri Nov  7 20:17:42 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1015	Fri Nov  7 20:17:43 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1008	Fri Nov  7 20:17:44 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1010	Fri Nov  7 20:17:45 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1007	Fri Nov  7 20:17:45 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1017	Fri Nov  7 20:17:46 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1008	Fri Nov  7 20:17:47 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1021	Fri Nov  7 20:17:48 1997
   Repository revision:	1.1021	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1007	Fri Nov  7 20:17:49 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Thread.h         	Status: Up-to-date

   Working revision:	1.2	Wed Nov  5 18:13:18 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Thread.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1037	Fri Nov  7 20:17:50 1997
   Repository revision:	1.1037	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1005	Fri Nov  7 20:17:52 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday November 7, 1997 @ 16:52
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/src

Added Files:
	ProcessorPrivate.C ProcessorPrivate.h 
Log Message:
Made NAMD run on shared mem machines.


===================================================================
File: ProcessorPrivate.C	Status: Up-to-date

   Working revision:	1.1	Fri Nov  7 20:28:04 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ProcessorPrivate.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ProcessorPrivate.h	Status: Up-to-date

   Working revision:	1.1	Fri Nov  7 20:27:07 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ProcessorPrivate.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday November 10, 1997 @ 10:45
Author:	milind

Update of /Projects/l3/cvsroot/namd2/arch
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/arch

Modified Files:
	Makearch.HPUX10 
Log Message:
Made comm a Cpv Variable.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.5	Sat Nov  8 00:19:37 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Monday November 10, 1997 @ 10:46
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	ComputeDPMTA.C Node.C Output.C Thread.h common.h main.C 
Log Message:
Made comm a Cpv Variable.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1048	Mon Nov 10 16:45:54 1997
   Repository revision:	1.1048	/Projects/l3/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1019	Mon Nov 10 16:45:55 1997
   Repository revision:	1.1019	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.12	Mon Nov 10 16:45:56 1997
   Repository revision:	1.12	/Projects/l3/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Thread.h         	Status: Up-to-date

   Working revision:	1.3	Sat Nov  8 00:33:55 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Thread.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1011	Mon Nov 10 16:45:58 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1006	Mon Nov 10 16:45:59 1997
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday November 12, 1997 @ 18:21
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv12251

Modified Files:
	ComputeHomeTuples.C 
Log Message:
Revised the tuple-generation procedure.  It now uses an array of tuples
to be checked, and flags to prevent duplicate tuples.



===================================================================
File: no file ComputeHomeTuples.C		Status: Needs Checkout

   Working revision:	1.1021	Thu Nov 13 00:21:01 1997
   Repository revision:	1.1021	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday November 13, 1997 @ 22:56
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	HomePatch.C Migration.h 
Log Message:
Added STL-style iterators, eliminated bad algorithm in doAtomMigration.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1038	Fri Nov 14 04:56:45 1997
   Repository revision:	1.1038	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.1004	Fri Nov 14 04:56:46 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Migration.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday November 13, 1997 @ 22:56
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src/Templates

Modified Files:
	ResizeArray.h 
Log Message:
Added STL-style iterators.


===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.1007	Fri Nov 14 04:56:56 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Templates/ResizeArray.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday November 17, 1997 @ 14:05
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory titan:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	Thread.h 
Log Message:
Restored Sequencer Thread Stack Size to 128 K.


===================================================================
File: Thread.h         	Status: Up-to-date

   Working revision:	1.4	Mon Nov 17 20:04:48 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/Thread.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)


****************************************
Date:	Tuesday December 2, 1997 @ 16:04
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	CollectionMaster.C 
Log Message:
Fixed a silly bug that accessed memory after it was freed.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1010	Tue Dec  2 22:04:00 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 10, 1997 @ 11:53
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	CollectionMaster.C ConfigList.C ProxyMgr.C dcdlib.C 
Log Message:
Removed the dcd file already exists error. Now, if a dcd file already exists,
it is moved to a .bak before writing new dcd file.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1011	Wed Dec 10 17:53:33 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1005	Wed Dec 10 17:53:34 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1018	Wed Dec 10 17:53:35 1997
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.4	Wed Dec 10 17:53:36 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday December 11, 1997 @ 16:45
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/brunner/namd2/src

Modified Files:
	AlgSeven.C 
Log Message:
Put in a load balancing fix.  It wouldn't work if a compute had its
proxies everywhere.  Untested, but probably works


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.8	Wed Dec 10 22:59:16 1997
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)


****************************************
Date:	Wednesday December 17, 1997 @ 4:28
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeFullDirect.C ComputeFullDirect.h WorkDistrib.C 
Log Message:
Full direct electrostatics now works in parallel.


===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1013	Wed Dec 17 10:28:07 1997
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1012)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirect.h	Status: Up-to-date

   Working revision:	1.1002	Wed Dec 17 10:28:08 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeFullDirect.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1038	Wed Dec 17 10:28:09 1997
   Repository revision:	1.1038	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 17, 1997 @ 9:21
Author:	milind

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/pvm3

Modified Files:
	pvmc_comm.c 
Log Message:
Changed according to the Converse Scheduler Specification.


===================================================================
File: pvmc_comm.c      	Status: Up-to-date

   Working revision:	1.10	Mon Dec 15 21:57:11 1997
   Repository revision:	1.10	/Projects/l3/cvsroot/namd2/pvm3/pvmc_comm.c,v

   Existing Tags:
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.9)
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday December 17, 1997 @ 9:22
Author:	milind

Update of /Projects/l3/cvsroot/namd2/dpmta-2.6/src
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/dpmta-2.6/src

Modified Files:
	Makefile.converse 
Log Message:
Fixed a makefile bug to take care of PVM_ARCH.


===================================================================
File: Makefile.converse	Status: Up-to-date

   Working revision:	1.4	Wed Dec 17 15:22:28 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/dpmta-2.6/src/Makefile.converse,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Friday December 19, 1997 @ 17:42
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ProxyMgr.C PatchMgr.C CollectionMaster.C 
Log Message:
Replaced assignments with memcpys and reordered memcpys for efficiency.


===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1019	Fri Dec 19 23:42:36 1997
   Repository revision:	1.1019	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1011	Fri Dec 19 23:42:37 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1012	Fri Dec 19 23:42:38 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday December 19, 1997 @ 17:48
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeMap.h ComputeMgr.C ComputeMgr.ci ComputeMgr.h 
	SimParameters.C SimParameters.h WorkDistrib.C 
Added Files:
	ComputeGlobal.C ComputeGlobal.h ComputeGlobalMsgs.C 
	ComputeGlobalMsgs.h TclCommands.C TclCommands.h 
Log Message:
Added Tcl interface for calculating forces.


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.1	Fri Dec 19 23:48:45 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobal.h  	Status: Up-to-date

   Working revision:	1.1	Fri Dec 19 23:48:46 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ComputeGlobal.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobalMsgs.C	Status: Up-to-date

   Working revision:	1.1	Fri Dec 19 23:48:47 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ComputeGlobalMsgs.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobalMsgs.h	Status: Up-to-date

   Working revision:	1.1	Fri Dec 19 23:48:47 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ComputeGlobalMsgs.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: TclCommands.C    	Status: Up-to-date

   Working revision:	1.1	Fri Dec 19 23:48:52 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/TclCommands.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: TclCommands.h    	Status: Up-to-date

   Working revision:	1.1	Fri Dec 19 23:48:53 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/TclCommands.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1011	Fri Dec 19 23:48:48 1997
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1016	Fri Dec 19 23:48:49 1997
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.ci    	Status: Up-to-date

   Working revision:	1.1004	Fri Dec 19 23:48:49 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeMgr.ci,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1009	Fri Dec 19 23:48:50 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1026	Fri Dec 19 23:48:51 1997
   Repository revision:	1.1026	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1015	Fri Dec 19 23:48:51 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1039	Fri Dec 19 23:48:53 1997
   Repository revision:	1.1039	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday December 19, 1997 @ 17:50
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Makefile Make.depends 
Log Message:
Added Tcl interface for calculating forces.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1053	Fri Dec 19 22:45:46 1997
   Repository revision:	1.1053	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.7	Fri Dec 19 23:07:26 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Monday December 22, 1997 @ 15:29
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	HomePatch.C PatchTypes.h ProxyMgr.C ProxyPatch.C Sequencer.C 
Log Message:
Proxies no longer send empty arrays back to HomePatch.  Requires some new
flags to be set correctly in Sequencer in order to work.  These are:
  maxForceMerged - this and faster are added into Results::normal array
  maxForceUsed - all forces slower than this are discarded (assumed zero)
Generally maxForceMerged doesn't change but maxForceUsed depends on timestep.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1039	Mon Dec 22 21:29:24 1997
   Repository revision:	1.1039	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.9	Mon Dec 22 21:29:25 1997
   Repository revision:	1.9	/Projects/l3/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.8)
	development-4            	(revision: 1.8)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1020	Mon Dec 22 21:29:26 1997
   Repository revision:	1.1020	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1017	Mon Dec 22 21:29:27 1997
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1035	Mon Dec 22 21:29:28 1997
   Repository revision:	1.1035	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday December 26, 1997 @ 17:10
Author:	milind

Update of /Projects/l3/cvsroot/namd2
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Made namd2 to compile, link and run under linux. Merged Templates and src
directoriies, and removed separate definition and declaration files for 
templates.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.8	Tue Dec 23 20:22:19 1997
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1054	Tue Dec 23 20:18:15 1997
   Repository revision:	1.1054	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday December 26, 1997 @ 17:10
Author:	milind

Update of /Projects/l3/cvsroot/namd2/arch
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2/arch

Modified Files:
	Makearch.Origin2000 Makearch.g++ 
Log Message:
Made namd2 to compile, link and run under linux. Merged Templates and src
directoriies, and removed separate definition and declaration files for 
templates.


===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.3	Fri Dec 26 19:37:18 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.g++     	Status: Up-to-date

   Working revision:	1.3	Mon Dec 22 23:31:36 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/arch/Makearch.g++,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Friday December 26, 1997 @ 17:11
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	BroadcastMgr.C BroadcastMgr.h BroadcastObject.h Compute.C 
	ComputeGeneral.C ComputeGeneral.h ComputeGlobal.C 
	ComputeHomeAtoms.h ComputeHomePatches.h ComputeHomeTuples.h 
	ComputeMgr.h ComputeNonbondedExcl.C ComputePatch.h 
	ComputePatchPair.h HomePatchTypes.h Hydrogen.h 
	MigrateAtomsMsg.h Molecule.C Molecule.h NamdTypes.h 
	ParseOptions.C Patch.h PatchMgr.h PositionBox.h 
	PositionOwnerBox.h ProxyMgr.h common.C common.h main.h 
Added Files:
	Box.h ObjectArena.h OwnerBox.h Queue.h ResizeArray.h 
	ResizeArrayIter.h ResizeArrayPrimIter.h ResizeArrayRaw.h 
	SortableResizeArray.h SortedArray.h UniqueSet.h 
	UniqueSetIter.h UniqueSetRaw.h UniqueSortedArray.h 
Removed Files:
	BroadcastObject.C ComputeHomeTuples.C PositionBox.C 
	PositionOwnerBox.C 
Log Message:
Made namd2 to compile, link and run under linux. Merged Templates and src
directoriies, and removed separate definition and declaration files for 
templates.


===================================================================
File: Box.h            	Status: Up-to-date

   Working revision:	1.1002	Tue Dec 23 22:43:18 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Box.h,v

   Existing Tags:
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ObjectArena.h    	Status: Up-to-date

   Working revision:	1.1	Tue Dec 23 18:34:55 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ObjectArena.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: OwnerBox.h       	Status: Up-to-date

   Working revision:	1.1	Tue Dec 23 22:57:14 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/OwnerBox.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Queue.h          	Status: Up-to-date

   Working revision:	1.1	Tue Dec 23 18:40:32 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/Queue.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.1	Thu Dec 25 19:00:12 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ResizeArray.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ResizeArrayIter.h	Status: Up-to-date

   Working revision:	1.1	Tue Dec 23 19:03:50 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ResizeArrayIter.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ResizeArrayPrimIter.h	Status: Up-to-date

   Working revision:	1.1	Tue Dec 23 19:03:01 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ResizeArrayPrimIter.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.1	Fri Dec 26 17:54:04 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SortableResizeArray.h	Status: Up-to-date

   Working revision:	1.1	Tue Dec 23 21:14:25 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/SortableResizeArray.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SortedArray.h    	Status: Up-to-date

   Working revision:	1.1	Tue Dec 23 21:19:33 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/SortedArray.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: UniqueSet.h      	Status: Up-to-date

   Working revision:	1.1	Tue Dec 23 19:27:51 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/UniqueSet.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: UniqueSetIter.h  	Status: Up-to-date

   Working revision:	1.1	Tue Dec 23 19:29:53 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/UniqueSetIter.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: UniqueSetRaw.h   	Status: Up-to-date

   Working revision:	1.1	Wed Dec 24 20:32:18 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/UniqueSetRaw.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: UniqueSortedArray.h	Status: Up-to-date

   Working revision:	1.1	Tue Dec 23 21:07:15 1997
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/UniqueSortedArray.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BroadcastMgr.C   	Status: Up-to-date

   Working revision:	1.6	Fri Dec 26 23:10:39 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.2)

===================================================================
File: BroadcastMgr.h   	Status: Up-to-date

   Working revision:	1.5	Fri Dec 26 23:10:39 1997
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)

===================================================================
File: BroadcastObject.h	Status: Up-to-date

   Working revision:	1.3	Tue Dec 23 20:03:38 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/BroadcastObject.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1015	Fri Dec 26 23:10:41 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGeneral.C 	Status: Up-to-date

   Working revision:	1.1004	Fri Dec 26 23:10:42 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGeneral.h 	Status: Up-to-date

   Working revision:	1.1002	Fri Dec 26 23:10:42 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.2	Fri Dec 26 23:10:43 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeHomeAtoms.h	Status: Up-to-date

   Working revision:	1.1001	Fri Dec 26 23:10:44 1997
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/ComputeHomeAtoms.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1000)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.1003	Fri Dec 26 23:10:44 1997
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeHomePatches.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1012	Tue Dec 23 20:16:33 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1010	Fri Dec 26 23:10:46 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1020	Fri Dec 26 23:10:47 1997
   Repository revision:	1.1020	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1019)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.1005	Fri Dec 26 23:10:48 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputePatch.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.1007	Fri Dec 26 23:10:48 1997
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ComputePatchPair.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatchTypes.h 	Status: Up-to-date

   Working revision:	1.1004	Fri Dec 26 23:10:49 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/HomePatchTypes.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Hydrogen.h       	Status: Up-to-date

   Working revision:	1.8	Fri Dec 26 23:10:50 1997
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/src/Hydrogen.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.6)

===================================================================
File: MigrateAtomsMsg.h	Status: Up-to-date

   Working revision:	1.7	Fri Dec 26 23:10:50 1997
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/MigrateAtomsMsg.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1018	Fri Dec 26 23:10:51 1997
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1015	Fri Dec 26 23:10:52 1997
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1008	Fri Dec 26 23:10:53 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1005	Fri Dec 26 23:10:55 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1010	Fri Dec 26 23:10:55 1997
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1008	Fri Dec 26 23:10:56 1997
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PositionBox.h    	Status: Up-to-date

   Working revision:	1.1004	Tue Dec 23 22:28:59 1997
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/PositionBox.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionOwnerBox.h	Status: Up-to-date

   Working revision:	1.1005	Tue Dec 23 22:57:23 1997
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1009	Fri Dec 26 23:10:59 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1009	Fri Dec 26 23:11:06 1997
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1012	Fri Dec 26 23:11:07 1997
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.h           	Status: Up-to-date

   Working revision:	1.1002	Fri Dec 26 23:11:08 1997
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/main.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file BroadcastObject.C		Status: Needs Checkout

   Working revision:	No entry for BroadcastObject.C
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Attic/BroadcastObject.C,v

===================================================================
File: no file ComputeHomeTuples.C		Status: Needs Checkout

   Working revision:	No entry for ComputeHomeTuples.C
   Repository revision:	1.1022	/Projects/l3/cvsroot/namd2/src/Attic/ComputeHomeTuples.C,v

===================================================================
File: no file PositionBox.C		Status: Needs Checkout

   Working revision:	No entry for PositionBox.C
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Attic/PositionBox.C,v

===================================================================
File: no file PositionOwnerBox.C		Status: Needs Checkout

   Working revision:	No entry for PositionOwnerBox.C
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Attic/PositionOwnerBox.C,v


****************************************
Date:	Friday December 26, 1997 @ 17:15
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src/Templates
In directory hamlet:/tmp_mnt/Projects/r5/milind/namd2/src/Templates

Removed Files:
	Box.C Box.h ObjectArena.C ObjectArena.h OwnerBox.C OwnerBox.h 
	Queue.h README ResizeArray.C ResizeArray.h ResizeArrayIter.h 
	ResizeArrayPrimIter.h ResizeArrayRaw.C ResizeArrayRaw.h 
	SortableResizeArray.C SortableResizeArray.h SortedArray.C 
	SortedArray.h UniqueSet.h UniqueSetIter.h UniqueSetRaw.C 
	UniqueSetRaw.h UniqueSortedArray.C UniqueSortedArray.h 
Log Message:
Removed Templates Directory.


===================================================================
File: no file Box.C		Status: Needs Checkout

   Working revision:	No entry for Box.C
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Templates/Attic/Box.C,v

===================================================================
File: no file Box.h		Status: Needs Checkout

   Working revision:	No entry for Box.h
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Templates/Attic/Box.h,v

===================================================================
File: no file ObjectArena.C		Status: Needs Checkout

   Working revision:	No entry for ObjectArena.C
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Templates/Attic/ObjectArena.C,v

===================================================================
File: no file ObjectArena.h		Status: Needs Checkout

   Working revision:	No entry for ObjectArena.h
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Templates/Attic/ObjectArena.h,v

===================================================================
File: no file OwnerBox.C		Status: Needs Checkout

   Working revision:	No entry for OwnerBox.C
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Templates/Attic/OwnerBox.C,v

===================================================================
File: no file OwnerBox.h		Status: Needs Checkout

   Working revision:	No entry for OwnerBox.h
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Templates/Attic/OwnerBox.h,v

===================================================================
File: no file Queue.h		Status: Needs Checkout

   Working revision:	No entry for Queue.h
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/Attic/Queue.h,v

===================================================================
File: no file README		Status: Needs Checkout

   Working revision:	No entry for README
   Repository revision:	1.1001	/Projects/l3/cvsroot/namd2/src/Templates/Attic/README,v

===================================================================
File: no file ResizeArray.C		Status: Needs Checkout

   Working revision:	No entry for ResizeArray.C
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Templates/Attic/ResizeArray.C,v

===================================================================
File: no file ResizeArray.h		Status: Needs Checkout

   Working revision:	No entry for ResizeArray.h
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/Templates/Attic/ResizeArray.h,v

===================================================================
File: no file ResizeArrayIter.h		Status: Needs Checkout

   Working revision:	No entry for ResizeArrayIter.h
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Templates/Attic/ResizeArrayIter.h,v

===================================================================
File: no file ResizeArrayPrimIter.h		Status: Needs Checkout

   Working revision:	No entry for ResizeArrayPrimIter.h
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Templates/Attic/ResizeArrayPrimIter.h,v

===================================================================
File: no file ResizeArrayRaw.C		Status: Needs Checkout

   Working revision:	No entry for ResizeArrayRaw.C
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/Templates/Attic/ResizeArrayRaw.C,v

===================================================================
File: no file ResizeArrayRaw.h		Status: Needs Checkout

   Working revision:	No entry for ResizeArrayRaw.h
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/Templates/Attic/ResizeArrayRaw.h,v

===================================================================
File: no file SortableResizeArray.C		Status: Needs Checkout

   Working revision:	No entry for SortableResizeArray.C
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Templates/Attic/SortableResizeArray.C,v

===================================================================
File: no file SortableResizeArray.h		Status: Needs Checkout

   Working revision:	No entry for SortableResizeArray.h
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Templates/Attic/SortableResizeArray.h,v

===================================================================
File: no file SortedArray.C		Status: Needs Checkout

   Working revision:	No entry for SortedArray.C
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/Templates/Attic/SortedArray.C,v

===================================================================
File: no file SortedArray.h		Status: Needs Checkout

   Working revision:	No entry for SortedArray.h
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Templates/Attic/SortedArray.h,v

===================================================================
File: no file UniqueSet.h		Status: Needs Checkout

   Working revision:	No entry for UniqueSet.h
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/Templates/Attic/UniqueSet.h,v

===================================================================
File: no file UniqueSetIter.h		Status: Needs Checkout

   Working revision:	No entry for UniqueSetIter.h
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/Templates/Attic/UniqueSetIter.h,v

===================================================================
File: no file UniqueSetRaw.C		Status: Needs Checkout

   Working revision:	No entry for UniqueSetRaw.C
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/Templates/Attic/UniqueSetRaw.C,v

===================================================================
File: no file UniqueSetRaw.h		Status: Needs Checkout

   Working revision:	No entry for UniqueSetRaw.h
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/src/Templates/Attic/UniqueSetRaw.h,v

===================================================================
File: no file UniqueSortedArray.C		Status: Needs Checkout

   Working revision:	No entry for UniqueSortedArray.C
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Templates/Attic/UniqueSortedArray.C,v

===================================================================
File: no file UniqueSortedArray.h		Status: Needs Checkout

   Working revision:	No entry for UniqueSortedArray.h
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/Templates/Attic/UniqueSortedArray.h,v


****************************************
Date:	Monday December 29, 1997 @ 13:26
Author:	milind

Update of /Projects/l3/cvsroot/namd2
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2

Modified Files:
	config 
Log Message:
config now creates an architecture-specific working directory which links
all the needed files and subdirectories.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.2	Mon Dec 29 17:44:38 1997
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/config,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Monday January 5, 1998 @ 14:19
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	ComputeRestraints.C 
Log Message:
removed cycling over an array of constrained atoms for moving
restraints. Now it's just clean one-atom case.


===================================================================
File: ComputeRestraints.C	Status: Up-to-date

   Working revision:	1.3	Mon Jan  5 20:19:04 1998
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/ComputeRestraints.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)


****************************************
Date:	Monday January 5, 1998 @ 14:22
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	Molecule.C 
Log Message:
for constraints added a NAMD_die for the case when the
movingConstraints are ON and the chosen atom is not constrained.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1019	Mon Jan  5 20:22:55 1998
   Repository revision:	1.1019	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 5, 1998 @ 14:23
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	ComputeMap.h 
Log Message:
added  computeSMDType to enum ComputeType for SMD



===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1012	Mon Jan  5 20:23:39 1998
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 5, 1998 @ 14:24
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	ComputeMgr.C 
Log Message:
added #include "ComputeSMD.h"; 
added case computeSMDType in ComputeMgr::createCompute for SMD



===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1017	Mon Jan  5 20:24:26 1998
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 5, 1998 @ 14:25
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	Controller.C 
Log Message:
added reduction->(un)subscribe(REDUCTION_SMD_ENERGY) to (con/de)structor
added SMD fields in printEnergies().



===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1028	Mon Jan  5 20:25:29 1998
   Repository revision:	1.1028	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 5, 1998 @ 14:26
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
added reduction->(un)Register(REDUCTION_SMD_ENERGY) to (con/de)structor
added reduction->submit(step,REDUCTION_SMD_ENERGY,0.) to submitReductions()



===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1036	Mon Jan  5 20:26:49 1998
   Repository revision:	1.1036	/Projects/l3/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 5, 1998 @ 14:27
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	ReductionMgr.h 
Log Message:
added REDUCTION_SMD_ENERGY to ReductionTag enum.



===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1008	Mon Jan  5 20:27:16 1998
   Repository revision:	1.1008	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 5, 1998 @ 14:28
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	SimParameters.C SimParameters.h 
Log Message:
Introduced SMD parameters.



===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1027	Mon Jan  5 20:28:18 1998
   Repository revision:	1.1027	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1016	Mon Jan  5 20:28:20 1998
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 5, 1998 @ 14:29
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
added mapComputePatch(computeSMDType) to WorkDistrib::mapComputes



===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1040	Mon Jan  5 20:29:02 1998
   Repository revision:	1.1040	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 5, 1998 @ 14:32
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	Node.h 
Log Message:
added public member SMDData smdData
added functions recvSMDData(), sendSMDData()



===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1010	Mon Jan  5 20:32:24 1998
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 5, 1998 @ 14:33
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	Node.C 
Log Message:
added new SMDData() in phase 2 of startup;
added functions recvSMDData() and sendSMDData()


===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1020	Mon Jan  5 20:33:01 1998
   Repository revision:	1.1020	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 5, 1998 @ 14:33
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	Node.ci 
Log Message:
added 'packmessage SMDDataMsg' and an entry recvSMDData.



===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1006	Mon Jan  5 20:33:24 1998
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 5, 1998 @ 14:34
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	NamdOneTools.C NamdOneTools.h 
Log Message:
added function BigReal gaussian_random_number(void);



===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.10	Mon Jan  5 20:34:08 1998
   Repository revision:	1.10	/Projects/l3/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)

===================================================================
File: NamdOneTools.h   	Status: Up-to-date

   Working revision:	1.3	Mon Jan  5 20:34:09 1998
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/NamdOneTools.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)


****************************************
Date:	Monday January 5, 1998 @ 14:35
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Added Files:
	SMD.C SMD.h 
Log Message:
Initial revision. Class SMDData for SMD (Steered Molecular Dynamics).



===================================================================
File: SMD.C            	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 08:11:16 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/SMD.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SMD.h            	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 02:50:41 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/SMD.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday January 5, 1998 @ 14:36
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Added Files:
	SMDMsgs.C SMDMsgs.h 
Log Message:
Messages for passing SMD data between Nodes.


===================================================================
File: SMDMsgs.C        	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 02:50:42 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/SMDMsgs.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SMDMsgs.h        	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 02:50:42 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/SMDMsgs.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday January 5, 1998 @ 14:37
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Added Files:
	ComputeSMD.C ComputeSMD.h 
Log Message:
One atom SMD computation. Very similar to ComputeRestraints.



===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 03:34:58 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeSMD.h     	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 02:50:42 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/src/ComputeSMD.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday January 5, 1998 @ 14:38
Author:	sergei

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2

Modified Files:
	Makefile 
Log Message:
added ComputeSMD.o, SMD.o, SMDMsgs.o


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1055	Mon Jan  5 20:14:09 1998
   Repository revision:	1.1055	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 5, 1998 @ 15:03
Author:	dhardy

Update of /Projects/l3/cvsroot/namd2/ug
In directory brussel:/tmp_mnt/Projects/namd2/Programmers/dhardy/namd2/ug

Log Message:
Directory /Projects/l3/cvsroot/namd2/ug added to the repository


[input file was '-']

****************************************
Date:	Monday January 5, 1998 @ 15:08
Author:	dhardy

Update of /Projects/l3/cvsroot/namd2/ug/figures
In directory brussel:/tmp_mnt/Projects/namd2/Programmers/dhardy/namd2/ug/figures

Log Message:
Directory /Projects/l3/cvsroot/namd2/ug/figures added to the repository


[input file was '-']

****************************************
Date:	Monday January 5, 1998 @ 15:12
Author:	dhardy

Update of /Projects/l3/cvsroot/namd2/ug
In directory brussel:/tmp_mnt/Projects/namd2/Programmers/dhardy/namd2/ug

Added Files:
	Makefile namd_begindoc.tex namd_copyright.tex namd_macros.tex 
	namd_title.tex namd_version.tex ug.bib ug.tex ug_add.tex 
	ug_avail.tex ug_basic.tex ug_intro.tex ug_io.tex ug_macros.tex 
	ug_runit.tex ug_sample.tex ug_start.tex ug_xplor.tex 
Log Message:
user guide, first draft


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:22 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namd_begindoc.tex	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 21:12:22 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/namd_begindoc.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namd_copyright.tex	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:24 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/namd_copyright.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namd_macros.tex  	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 21:12:26 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/namd_macros.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namd_title.tex   	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:24 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/namd_title.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namd_version.tex 	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:25 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/namd_version.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug.bib           	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 21:12:29 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/ug.bib,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug.tex           	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 21:12:30 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/ug.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:25 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_avail.tex     	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 21:12:31 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/ug_avail.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:25 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 21:12:32 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:25 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_macros.tex    	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 21:12:34 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/ug_macros.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_runit.tex     	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 21:12:34 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/ug_runit.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_sample.tex    	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:25 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/ug_sample.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:25 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_xplor.tex     	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:25 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/ug_xplor.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday January 5, 1998 @ 15:13
Author:	dhardy

Update of /Projects/l3/cvsroot/namd2/ug/figures
In directory brussel:/tmp_mnt/Projects/namd2/Programmers/dhardy/namd2/ug/figures

Added Files:
	anglelist.eps dihelist.eps dpmta.eps fmaOn.eps implist.eps 
	pairlistdist.eps patch_assignment.eps patch_comm.eps 
	shifting.eps sphere_combo.eps sphere_single.eps switching.eps 
Log Message:
user guide, figures


===================================================================
File: anglelist.eps    	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:22 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/figures/anglelist.eps,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dihelist.eps     	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:22 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/figures/dihelist.eps,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dpmta.eps        	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:23 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/figures/dpmta.eps,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fmaOn.eps        	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:23 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/figures/fmaOn.eps,v

   Existing Tags:
	No Tags Exist

===================================================================
File: implist.eps      	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:23 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/figures/implist.eps,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pairlistdist.eps 	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:23 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/figures/pairlistdist.eps,v

   Existing Tags:
	No Tags Exist

===================================================================
File: patch_assignment.eps	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:23 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/figures/patch_assignment.eps,v

   Existing Tags:
	No Tags Exist

===================================================================
File: patch_comm.eps   	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:23 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/figures/patch_comm.eps,v

   Existing Tags:
	No Tags Exist

===================================================================
File: shifting.eps     	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:24 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/figures/shifting.eps,v

   Existing Tags:
	No Tags Exist

===================================================================
File: sphere_combo.eps 	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:24 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/figures/sphere_combo.eps,v

   Existing Tags:
	No Tags Exist

===================================================================
File: sphere_single.eps	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:24 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/figures/sphere_single.eps,v

   Existing Tags:
	No Tags Exist

===================================================================
File: switching.eps    	Status: Up-to-date

   Working revision:	1.1	Mon Jan  5 20:59:24 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/ug/figures/switching.eps,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday January 5, 1998 @ 16:07
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	SimParameters.C 
Log Message:



===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1028	Mon Jan  5 22:07:50 1998
   Repository revision:	1.1028	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 5, 1998 @ 23:36
Author:	jim

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added tclx library.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.9	Tue Jan  6 04:59:54 1998
   Repository revision:	1.9	/Projects/l3/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1056	Tue Jan  6 04:49:29 1998
   Repository revision:	1.1056	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 5, 1998 @ 23:41
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeGlobal.C 
Log Message:
Added tclx library.


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.3	Tue Jan  6 05:41:26 1998
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday January 5, 1998 @ 23:42
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	TclCommands.C 
Log Message:
Added tclx library.


===================================================================
File: TclCommands.C    	Status: Up-to-date

   Working revision:	1.2	Tue Jan  6 05:42:13 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/TclCommands.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday January 6, 1998 @ 11:31
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv8661

Modified Files:
	Rebalancer.C 
Log Message:

Prof. Kale fixed some bugs


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.13	Tue Jan  6 17:31:48 1998
   Repository revision:	1.13	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)


****************************************
Date:	Tuesday January 6, 1998 @ 13:42
Author:	dhardy

Update of /Projects/l3/cvsroot/namd2/ug
In directory brussel:/tmp_mnt/Projects/namd2/Programmers/dhardy/namd2/ug

Modified Files:
	Makefile 
Log Message:


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.2	Tue Jan  6 19:40:13 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday January 6, 1998 @ 13:44
Author:	dhardy

Update of /Projects/l3/cvsroot/namd2/ug
In directory brussel:/tmp_mnt/Projects/namd2/Programmers/dhardy/namd2/ug

Modified Files:
	Makefile 
Log Message:


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.3	Tue Jan  6 19:43:38 1998
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday January 6, 1998 @ 14:08
Author:	dhardy

Update of /Projects/l3/cvsroot/namd2/ug
In directory brussel:/tmp_mnt/Projects/namd2/Programmers/dhardy/namd2/ug

Modified Files:
	namd_title.tex 
Log Message:
Changed placement of version on title page.


===================================================================
File: namd_title.tex   	Status: Up-to-date

   Working revision:	1.2	Tue Jan  6 20:04:00 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/ug/namd_title.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday January 6, 1998 @ 14:52
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	common.h 
Log Message:
added PNPERKCALMOL


===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1013	Tue Jan  6 20:52:48 1998
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 6, 1998 @ 14:54
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	SMD.C SimParameters.C 
Log Message:
fixed SMD output


===================================================================
File: SMD.C            	Status: Up-to-date

   Working revision:	1.2	Tue Jan  6 17:01:07 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/SMD.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1029	Tue Jan  6 20:54:07 1998
   Repository revision:	1.1029	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday January 8, 1998 @ 16:01
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv11518

Modified Files:
	Rebalancer.C RefineOnly.C AlgSeven.C 
Log Message:
Load balancing refinements added



===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.14	Thu Jan  8 22:01:30 1998
   Repository revision:	1.14	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: RefineOnly.C     	Status: Up-to-date

   Working revision:	1.5	Thu Jan  8 22:01:30 1998
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/RefineOnly.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)

===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.9	Thu Jan  8 22:01:30 1998
   Repository revision:	1.9	/Projects/l3/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)


****************************************
Date:	Saturday January 10, 1998 @ 17:57
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeGlobal.C 
Log Message:
Added loadmasses command to TCL.


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.4	Sat Jan 10 23:57:25 1998
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday January 13, 1998 @ 11:06
Author:	milind

Update of /Projects/l3/cvsroot/namd2/arch
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/arch

Modified Files:
	Makearch.HPUX10 Makearch.Origin2000 Makearch.Solaris 
Log Message:
Some options changed.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.6	Tue Dec 30 23:20:54 1997
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.4	Tue Dec 30 23:03:31 1997
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.3	Tue Dec 30 21:34:32 1997
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Tuesday January 13, 1998 @ 11:07
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	ParseOptions.C ParseOptions.h SimParameters.C 
Log Message:
added a prefix to the names of the units because they clashed with names
of some predifined constants in Solaris include files.


===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1006	Tue Jan 13 17:07:03 1998
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.h   	Status: Up-to-date

   Working revision:	1.1002	Tue Jan 13 17:07:04 1998
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ParseOptions.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1030	Tue Jan 13 17:07:05 1998
   Repository revision:	1.1030	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 13, 1998 @ 17:10
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ResizeArrayRaw.h 
Log Message:
Fixed bugs in copy constructors.


===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.2	Tue Jan 13 20:45:13 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday January 13, 1998 @ 17:10
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	HomePatch.C HomePatch.h 
Log Message:
Added margin checking - prelude to automatic migration.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1040	Tue Jan 13 23:10:57 1998
   Repository revision:	1.1040	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1011	Tue Jan 13 23:10:58 1998
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 13, 1998 @ 17:30
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory glasgow:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	ComputeSMD.C 
Log Message:
Changed the energy and force calculation to use 
kr^e/e and kr^(e-1) respectively.



===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.2	Mon Jan  5 23:20:27 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday January 13, 1998 @ 17:31
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory glasgow:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	NamdState.C NamdState.h 
Log Message:
Added member smdData, usage similar to Molecule.



===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1011	Tue Jan 13 23:31:12 1998
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1005	Tue Jan 13 23:31:14 1998
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 13, 1998 @ 17:31
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory glasgow:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	common.h 
Log Message:
Added SMDDATATAG tag



===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1014	Tue Jan 13 23:31:45 1998
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 13, 1998 @ 17:34
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory glasgow:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	Node.C 
Log Message:
Moved smdData initialization to take place together with Molecule.



===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1021	Tue Jan 13 23:34:44 1998
   Repository revision:	1.1021	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 13, 1998 @ 17:38
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory glasgow:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	SMD.C SMD.h 
Log Message:
Added functions {send,receive}_SMDData for passing from Node 0 to others
Added function init() for initialization on Node 0
changed constructor signature to take SimParameters* arg



===================================================================
File: SMD.C            	Status: Up-to-date

   Working revision:	1.3	Tue Jan 13 23:10:57 1998
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/SMD.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SMD.h            	Status: Up-to-date

   Working revision:	1.2	Tue Jan 13 23:34:48 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/SMD.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday January 13, 1998 @ 17:39
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory glasgow:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	Node.C 
Log Message:



===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1022	Tue Jan 13 23:39:56 1998
   Repository revision:	1.1022	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 13, 1998 @ 17:51
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	NamdState.C NamdState.h 
Log Message:



===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1012	Tue Jan 13 23:51:45 1998
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1006	Tue Jan 13 23:51:46 1998
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 13, 1998 @ 18:40
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	HomePatch.C HomePatch.h 
Log Message:
Added hydrogen group size checking (vs. hgroupcutoff parameter).


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1041	Wed Jan 14 00:40:57 1998
   Repository revision:	1.1041	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1012	Wed Jan 14 00:40:57 1998
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 13, 1998 @ 19:52
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory glasgow:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	SMD.C SMD.h NamdState.h 
Log Message:
little fixes for SMD


===================================================================
File: SMD.C            	Status: Up-to-date

   Working revision:	1.4	Wed Jan 14 01:46:10 1998
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/SMD.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SMD.h            	Status: Up-to-date

   Working revision:	1.3	Wed Jan 14 01:44:54 1998
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/SMD.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1007	Wed Jan 14 01:52:54 1998
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 14, 1998 @ 13:11
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	SimParameters.C SMD.C 
Log Message:
added checking for SMDAtom defined



===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1031	Wed Jan 14 19:11:18 1998
   Repository revision:	1.1031	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SMD.C            	Status: Up-to-date

   Working revision:	1.5	Wed Jan 14 19:07:35 1998
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/src/SMD.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday January 14, 1998 @ 19:18
Author:	jim

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	MStream.h 
Log Message:
Fixed 3*sizeof(double) to sizeof(Vector) to accomodate SMALLREALS.


===================================================================
File: MStream.h        	Status: Up-to-date

   Working revision:	1.2	Thu Jan 15 01:14:20 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/MStream.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Wednesday January 14, 1998 @ 22:58
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory paris:/private/auto464000139/Programmers/jim/namd2_aCC/src

Modified Files:
	ComputeGlobal.C ComputeGlobal.h ComputeMap.h HomePatch.h 
	PatchMgr.h Sequencer.h 
Log Message:
Corrected "friend foo" to "friend class foo".


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.5	Thu Jan 15 04:58:45 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobal.h  	Status: Up-to-date

   Working revision:	1.2	Thu Jan 15 04:58:46 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/ComputeGlobal.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1013	Thu Jan 15 04:58:47 1998
   Repository revision:	1.1013	/Projects/r1/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1013	Thu Jan 15 04:58:48 1998
   Repository revision:	1.1013	/Projects/r1/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1009	Thu Jan 15 04:58:49 1998
   Repository revision:	1.1009	/Projects/r1/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1011	Thu Jan 15 04:58:50 1998
   Repository revision:	1.1011	/Projects/r1/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 14, 1998 @ 23:40
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2_aCC/src

Modified Files:
	HomePatchList.h CollectionMgr.h CollectionMaster.h 
Log Message:
Added int return type to comparison operators.


===================================================================
File: HomePatchList.h  	Status: Up-to-date

   Working revision:	1.1003	Thu Jan 15 05:40:52 1998
   Repository revision:	1.1003	/Projects/r1/cvsroot/namd2/src/HomePatchList.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1006	Thu Jan 15 05:40:52 1998
   Repository revision:	1.1006	/Projects/r1/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1009	Thu Jan 15 05:40:53 1998
   Repository revision:	1.1009	/Projects/r1/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 14, 1998 @ 23:46
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2_aCC/src

Modified Files:
	ResizeArrayRaw.h 
Log Message:
Various changes to template subclasses for picky aCC compiler.


===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.3	Thu Jan 15 05:30:07 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday January 14, 1998 @ 23:48
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2_aCC/src

Modified Files:
	SortableResizeArray.h SortedArray.h UniqueSortedArray.h 
Log Message:
Various changes to template subclasses for picky aCC compiler.


===================================================================
File: SortableResizeArray.h	Status: Up-to-date

   Working revision:	1.2	Thu Jan 15 05:23:11 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/SortableResizeArray.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SortedArray.h    	Status: Up-to-date

   Working revision:	1.2	Thu Jan 15 05:24:10 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/SortedArray.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: UniqueSortedArray.h	Status: Up-to-date

   Working revision:	1.2	Thu Jan 15 05:26:54 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/UniqueSortedArray.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday January 15, 1998 @ 12:39
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2_aCC/src

Modified Files:
	LJTable.C Patch.C 
Log Message:
Tweaks for picky aCC compiler.


===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.1006	Thu Jan 15 18:39:39 1998
   Repository revision:	1.1006	/Projects/r1/cvsroot/namd2/src/LJTable.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1017	Thu Jan 15 18:39:40 1998
   Repository revision:	1.1017	/Projects/r1/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday January 15, 1998 @ 14:35
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2_new

Modified Files:
	config 
Log Message:
Switched links from absolute to relative pathnames so directory can move.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.3	Thu Jan 15 20:27:24 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/config,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Thursday January 15, 1998 @ 22:35
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory glasgow:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	SMD.C 
Log Message:
Small fixes.


===================================================================
File: SMD.C            	Status: Up-to-date

   Working revision:	1.6	Thu Jan 15 00:41:38 1998
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/SMD.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday January 16, 1998 @ 2:00
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory glasgow:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	Node.C 
Log Message:
minor fix for SMD


===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1023	Fri Jan 16 08:00:42 1998
   Repository revision:	1.1023	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday January 16, 1998 @ 17:13
Author:	brunner

Update of /Projects/l3/cvsroot/CVSROOT
In directory ophelia:/tmp_mnt/Projects/r1/namd/Programmers/brunner/loginfo

Modified Files:
	loginfo 
Log Message:
Changed email list: removed ari and nealk, and added sergei


===================================================================
File: loginfo          	Status: Up-to-date

   Working revision:	1.3	Fri Jan 16 23:12:10 1998
   Repository revision:	1.3	/Projects/l3/cvsroot/CVSROOT/loginfo,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday January 22, 1998 @ 14:06
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv17895

Modified Files:
	AlgSeven.C Rebalancer.C 
Log Message:
Modified load balancing printouts


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.10	Thu Jan 22 20:06:04 1998
   Repository revision:	1.10	/Projects/l3/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.15	Thu Jan 22 20:06:04 1998
   Repository revision:	1.15	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)


****************************************
Date:	Thursday January 22, 1998 @ 14:11
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv20208

Modified Files:
	ComputeMgr.C WorkDistrib.C WorkDistrib.h WorkDistrib.ci 
Log Message:
Modified the ComputeMap redistribution to send only new patch assignments.


===================================================================
File: no file ComputeMgr.C		Status: Needs Checkout

   Working revision:	1.1018	Thu Jan 22 20:11:03 1998
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file WorkDistrib.C		Status: Needs Checkout

   Working revision:	1.1041	Thu Jan 22 20:11:05 1998
   Repository revision:	1.1041	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file WorkDistrib.h		Status: Needs Checkout

   Working revision:	1.1011	Thu Jan 22 20:11:06 1998
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file WorkDistrib.ci		Status: Needs Checkout

   Working revision:	1.1006	Thu Jan 22 20:11:07 1998
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday January 23, 1998 @ 13:50
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv24149

Modified Files:
	Molecule.C 
Log Message:
More efficient memory allocation by combining allocations for 3 small
blocks.  Further improvement by using a pool allocation is still
desirable.


===================================================================
File: no file Molecule.C		Status: Needs Checkout

   Working revision:	1.1020	Fri Jan 23 19:50:29 1998
   Repository revision:	1.1020	/Projects/l3/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 9, 1998 @ 10:24
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/arch
In directory hamlet:/tmp/cvs-serv23314/d

Modified Files:
	Makearch.HPUX10 Makearch.HPUX9 Makearch.Origin2000 
	Makearch.SP3 Makearch.Solaris Makearch.T3E Makearch.g++ 
	Makearch.template 
Log Message:
Moved TCL flags and variables to the Makearch files, because the T3E
doesn't have TCL, so I needed to turn it off depending on machine-type.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.7	Mon Feb  9 16:24:10 1998
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)

===================================================================
File: Makearch.HPUX9   	Status: Up-to-date

   Working revision:	1.3	Mon Feb  9 16:24:10 1998
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/arch/Makearch.HPUX9,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.5	Mon Feb  9 16:24:10 1998
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.SP3     	Status: Up-to-date

   Working revision:	1.3	Mon Feb  9 16:24:10 1998
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/arch/Makearch.SP3,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.4	Mon Feb  9 16:24:10 1998
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.5	Mon Feb  9 16:24:10 1998
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	release-alpha-1          	(revision: 1.4)

===================================================================
File: Makearch.g++     	Status: Up-to-date

   Working revision:	1.4	Mon Feb  9 16:24:10 1998
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/arch/Makearch.g++,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.template	Status: Up-to-date

   Working revision:	1.3	Mon Feb  9 16:24:10 1998
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/arch/Makearch.template,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Monday February 9, 1998 @ 10:24
Author:	brunner

Update of /Projects/l3/cvsroot/namd2
In directory hamlet:/tmp/cvs-serv23314

Modified Files:
	Makefile 
Log Message:
Moved TCL flags and variables to the Makearch files, because the T3E
doesn't have TCL, so I needed to turn it off depending on machine-type.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1057	Mon Feb  9 16:24:11 1998
   Repository revision:	1.1057	/Projects/l3/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 9, 1998 @ 10:32
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/arch
In directory hamlet:/tmp/cvs-serv23392

Modified Files:
	Makearch.Origin2000 
Log Message:
Turned TCL off, since it doesn't work on the O2K either.


===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.6	Mon Feb  9 16:32:53 1998
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Monday February 9, 1998 @ 23:33
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Split ComputeGlobal into different classes and files.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.10	Tue Feb 10 04:58:21 1998
   Repository revision:	1.10	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1058	Tue Feb 10 04:51:47 1998
   Repository revision:	1.1058	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 9, 1998 @ 23:35
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeGlobal.C ComputeGlobal.h SimParameters.C 
	SimParameters.h 
Added Files:
	ComputeGlobalMaster.C ComputeGlobalMaster.h ComputeTcl.C 
	ComputeTcl.h 
Log Message:
Split ComputeGlobal into different classes and files.
Switched globalForces and globalForcesTcl to tclForces and tclForcesScript.
Added (soon to be used) freeEnergy and freeEnergyConfig.


===================================================================
File: ComputeGlobalMaster.C	Status: Up-to-date

   Working revision:	1.1	Tue Feb 10 05:35:03 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeGlobalMaster.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobalMaster.h	Status: Up-to-date

   Working revision:	1.1	Tue Feb 10 05:35:04 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeGlobalMaster.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.1	Tue Feb 10 05:35:04 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeTcl.h     	Status: Up-to-date

   Working revision:	1.1	Tue Feb 10 05:35:05 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeTcl.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.6	Tue Feb 10 05:35:02 1998
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobal.h  	Status: Up-to-date

   Working revision:	1.3	Tue Feb 10 05:35:02 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/ComputeGlobal.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1032	Tue Feb 10 05:35:06 1998
   Repository revision:	1.1032	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1017	Tue Feb 10 05:35:06 1998
   Repository revision:	1.1017	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 10, 1998 @ 0:44
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added class ComputeFreeEnergy.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.11	Tue Feb 10 05:43:00 1998
   Repository revision:	1.11	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1059	Tue Feb 10 05:39:17 1998
   Repository revision:	1.1059	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 10, 1998 @ 0:45
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeGlobal.C ComputeTcl.C 
Added Files:
	ComputeFreeEnergy.C ComputeFreeEnergy.h 
Log Message:
Added class ComputeFreeEnergy.


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.1	Tue Feb 10 06:45:08 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeFreeEnergy.h	Status: Up-to-date

   Working revision:	1.1	Tue Feb 10 06:45:09 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.7	Tue Feb 10 06:45:09 1998
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.2	Tue Feb 10 06:45:10 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday February 10, 1998 @ 17:30
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	CollectionMgr.C ComputeMgr.C Namd.C Node.C PatchMgr.C 
	ProxyMgr.C ReductionMgr.C WorkDistrib.C 
Log Message:
Fixed to reflect the current changes to Charm++ translator.


===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1009	Tue Feb 10 23:30:26 1998
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1019	Tue Feb 10 23:30:28 1998
   Repository revision:	1.1019	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.1006	Tue Feb 10 23:30:29 1998
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/Namd.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1024	Tue Feb 10 23:30:30 1998
   Repository revision:	1.1024	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1012	Tue Feb 10 23:30:30 1998
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1021	Tue Feb 10 23:30:31 1998
   Repository revision:	1.1021	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1022	Tue Feb 10 23:30:32 1998
   Repository revision:	1.1022	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1042	Tue Feb 10 23:30:33 1998
   Repository revision:	1.1042	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 10, 1998 @ 17:43
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	BroadcastMgr.C BroadcastMgr.ci BroadcastMgr.h LdbCoordinator.C 
Log Message:
Fixed to reflect changes to Charm++ translator.


===================================================================
File: BroadcastMgr.C   	Status: Up-to-date

   Working revision:	1.7	Tue Feb 10 23:43:01 1998
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.2)

===================================================================
File: BroadcastMgr.ci  	Status: Up-to-date

   Working revision:	1.2	Tue Feb 10 23:43:02 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.ci,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: BroadcastMgr.h   	Status: Up-to-date

   Working revision:	1.6	Tue Feb 10 23:43:03 1998
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.26	Tue Feb 10 22:26:49 1998
   Repository revision:	1.26	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Wednesday February 11, 1998 @ 1:27
Author:	brunner

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Molecule.C Molecule.h 
Log Message:
Completed interface to free energy perturbation, added code for
determining atomid from segid, resid, and atomname.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1021	Wed Feb 11 07:27:23 1998
   Repository revision:	1.1021	/Projects/r1/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1016	Wed Feb 11 07:27:24 1998
   Repository revision:	1.1016	/Projects/r1/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 11, 1998 @ 1:31
Author:	brunner

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeFreeEnergy.C ComputeFreeEnergy.h 
Log Message:
Finished interface to free energy perturbation code, including method
for determining atomid from segnamde, resid, and atomname.


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.2	Wed Feb 11 07:31:34 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeFreeEnergy.h	Status: Up-to-date

   Working revision:	1.2	Wed Feb 11 07:31:35 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 11, 1998 @ 3:13
Author:	brunner

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeTcl.C ComputeTcl.h 
Log Message:
Added atomid command to tclForces.  Finds id from segname, resid, atomname.


===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.3	Wed Feb 11 09:13:25 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeTcl.h     	Status: Up-to-date

   Working revision:	1.2	Wed Feb 11 09:13:26 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/ComputeTcl.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 11, 1998 @ 11:49
Author:	brunner

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeFreeEnergy.C ComputeFreeEnergy.h 
Log Message:
Added filename parameter to user_initialize().


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.3	Wed Feb 11 17:49:03 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeFreeEnergy.h	Status: Up-to-date

   Working revision:	1.3	Wed Feb 11 17:49:03 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday February 13, 1998 @ 16:02
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeFreeEnergy.C ComputeFreeEnergy.h ComputeTcl.C 
	ConfigList.C SimParameters.C 
Log Message:
Added script reading from config file and used streams in free energy.


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.4	Fri Feb 13 22:02:39 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeFreeEnergy.h	Status: Up-to-date

   Working revision:	1.4	Fri Feb 13 22:02:40 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.4	Fri Feb 13 22:02:40 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1006	Fri Feb 13 22:02:41 1998
   Repository revision:	1.1006	/Projects/r1/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1033	Fri Feb 13 22:02:42 1998
   Repository revision:	1.1033	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday February 14, 1998 @ 3:55
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeFreeEnergy.C ComputeTcl.C ConfigList.C SimParameters.C 
Log Message:
Final changes to allow inline reading of { } delimited input.
Strings read this way begin with a { but do not end with a }.
This was done to allow inlines to be readily distinguishable.


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.5	Sat Feb 14 09:55:22 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.5	Sat Feb 14 09:55:23 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1007	Sat Feb 14 09:55:23 1998
   Repository revision:	1.1007	/Projects/r1/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1034	Sat Feb 14 09:55:24 1998
   Repository revision:	1.1034	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday February 15, 1998 @ 18:23
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeGlobal.C ComputeGlobal.h ComputeTcl.C ComputeTcl.h 
Log Message:
Added atom group centers of mass to Tcl interface.


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.8	Mon Feb 16 00:23:18 1998
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobal.h  	Status: Up-to-date

   Working revision:	1.4	Mon Feb 16 00:23:19 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/ComputeGlobal.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.6	Mon Feb 16 00:23:20 1998
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeTcl.h     	Status: Up-to-date

   Working revision:	1.3	Mon Feb 16 00:23:20 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/ComputeTcl.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday February 15, 1998 @ 18:24
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeGlobalMaster.C ComputeGlobalMaster.h 
	ComputeGlobalMsgs.C ComputeGlobalMsgs.h 
Log Message:
Added atom group centers of mass to Tcl interface.


===================================================================
File: ComputeGlobalMaster.C	Status: Up-to-date

   Working revision:	1.2	Mon Feb 16 00:24:37 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/ComputeGlobalMaster.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobalMaster.h	Status: Up-to-date

   Working revision:	1.2	Mon Feb 16 00:24:37 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/ComputeGlobalMaster.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobalMsgs.C	Status: Up-to-date

   Working revision:	1.2	Mon Feb 16 00:24:38 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/ComputeGlobalMsgs.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobalMsgs.h	Status: Up-to-date

   Working revision:	1.2	Mon Feb 16 00:24:38 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/ComputeGlobalMsgs.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday February 15, 1998 @ 18:25
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.depends 
Log Message:
Updated.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.12	Sat Feb 14 23:42:16 1998
   Repository revision:	1.12	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Sunday February 15, 1998 @ 18:47
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeGlobal.C 
Log Message:
Added code to actually distribute group forces to atoms.


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.9	Mon Feb 16 00:47:27 1998
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday February 17, 1998 @ 0:39
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	HomePatch.C HomePatch.h Molecule.C Molecule.h Node.C 
	Sequencer.C Sequencer.h SimParameters.C SimParameters.h 
Log Message:
SHAKE/RATTLE (rigidBonds) appears to work!!!  Still needs langevin, 
proper startup, and degree of freedom tracking.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1042	Tue Feb 17 06:39:19 1998
   Repository revision:	1.1042	/Projects/r1/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1014	Tue Feb 17 06:39:20 1998
   Repository revision:	1.1014	/Projects/r1/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1022	Tue Feb 17 06:39:21 1998
   Repository revision:	1.1022	/Projects/r1/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1017	Tue Feb 17 06:39:22 1998
   Repository revision:	1.1017	/Projects/r1/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1025	Tue Feb 17 06:39:22 1998
   Repository revision:	1.1025	/Projects/r1/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1037	Tue Feb 17 06:39:23 1998
   Repository revision:	1.1037	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1012	Tue Feb 17 06:39:24 1998
   Repository revision:	1.1012	/Projects/r1/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1035	Tue Feb 17 06:39:24 1998
   Repository revision:	1.1035	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1018	Tue Feb 17 06:39:25 1998
   Repository revision:	1.1018	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 17, 1998 @ 23:38
Author:	brunner

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C Molecule.C Molecule.h NamdState.C Sequencer.C 
Log Message:
RigidBonds mainly finished.  Now temperature is correct and a form
of Langevin dynamics works with constraints.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1029	Wed Feb 18 05:38:29 1998
   Repository revision:	1.1029	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1023	Wed Feb 18 05:38:30 1998
   Repository revision:	1.1023	/Projects/r1/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1018	Wed Feb 18 05:38:31 1998
   Repository revision:	1.1018	/Projects/r1/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1013	Wed Feb 18 05:38:31 1998
   Repository revision:	1.1013	/Projects/r1/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1038	Wed Feb 18 05:38:32 1998
   Repository revision:	1.1038	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 18, 1998 @ 13:14
Author:	partha

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Sequencer.C Sequencer.h 
Log Message:
Fixed Langevin dynamics, undoing changes from yesterday.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1039	Wed Feb 18 19:13:59 1998
   Repository revision:	1.1039	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1013	Wed Feb 18 19:14:00 1998
   Repository revision:	1.1013	/Projects/r1/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 18, 1998 @ 19:21
Author:	partha

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	HomePatch.C Molecule.C 
Log Message:
Small usability changes.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1043	Thu Feb 19 01:21:13 1998
   Repository revision:	1.1043	/Projects/r1/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1024	Thu Feb 19 01:21:14 1998
   Repository revision:	1.1024	/Projects/r1/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 25, 1998 @ 19:51
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	CollectionMaster.C ParseOptions.C ReductionMgr.C 
Log Message:
Fixed bugs in CollectionMaster and ReductionManager that were causing
crash on Origin2000.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1013	Thu Feb 26 01:51:23 1998
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1007	Thu Feb 26 01:51:24 1998
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1023	Thu Feb 26 01:51:25 1998
   Repository revision:	1.1023	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 26, 1998 @ 18:14
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	common.C common.h 
Log Message:
Reduced memory requirements further by using CmiAlloc and CmiFree only
for messages and not for all new and deletes.


===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1010	Fri Feb 27 00:14:30 1998
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1015	Fri Feb 27 00:14:31 1998
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 3, 1998 @ 17:05
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/brunner/namd2/src

Modified Files:
	AtomMap.C BOCgroup.h BroadcastClient.C BroadcastClient.h 
	CollectionMaster.h CollectionMgr.h Compute.C Compute.h 
	ComputeGeneral.C ComputeGeneral.h ComputeHomeAtoms.h 
	ComputeMap.C ComputeMgr.C ComputeMgr.h ComputeNonbondedExcl.C 
	Debug.h HomePatch.C HomePatch.h InfoStream.h LdbCoordinator.h 
	MigrateAtomsMsg.C MigrateAtomsMsg.h Namd.C Namd.h NamdState.C 
	Node.C Node.h OwnerBox.h Patch.C PatchMap.C PatchMgr.C 
	PatchMgr.h PositionOwnerBox.h ProcessorPrivate.h ProxyMgr.C 
	ProxyMgr.h ProxyPatch.C ReductionMgr.C ReductionMgr.h 
	ResizeArray.h SMDMsgs.h SimParameters.C WorkDistrib.C 
	WorkDistrib.h common.C main.C main.h 
Log Message:
Changed include files for new simplified Charm++ include file structure.


===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1009	Tue Mar  3 23:04:59 1998
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/AtomMap.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.1004	Tue Mar  3 23:05:00 1998
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/BOCgroup.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BroadcastClient.C	Status: Up-to-date

   Working revision:	1.2	Tue Mar  3 23:05:00 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/BroadcastClient.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: BroadcastClient.h	Status: Up-to-date

   Working revision:	1.2	Tue Mar  3 23:05:01 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/BroadcastClient.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1010	Tue Mar  3 23:05:02 1998
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1007	Tue Mar  3 23:05:02 1998
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1016	Tue Mar  3 23:05:03 1998
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1010	Tue Mar  3 23:05:03 1998
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGeneral.C 	Status: Up-to-date

   Working revision:	1.1005	Tue Mar  3 23:05:04 1998
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGeneral.h 	Status: Up-to-date

   Working revision:	1.1003	Tue Mar  3 23:05:05 1998
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ComputeGeneral.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeAtoms.h	Status: Up-to-date

   Working revision:	1.1002	Tue Mar  3 23:05:06 1998
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/ComputeHomeAtoms.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1000)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1015	Tue Mar  3 23:05:06 1998
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1013)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1020	Tue Mar  3 23:05:10 1998
   Repository revision:	1.1020	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1011	Tue Mar  3 23:05:11 1998
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1021	Tue Mar  3 23:05:11 1998
   Repository revision:	1.1021	/Projects/l3/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1019)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Debug.h          	Status: Up-to-date

   Working revision:	1.1002	Tue Mar  3 23:05:12 1998
   Repository revision:	1.1002	/Projects/l3/cvsroot/namd2/src/Debug.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1044	Tue Mar  3 23:05:13 1998
   Repository revision:	1.1044	/Projects/l3/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1015	Tue Mar  3 23:05:14 1998
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1003	Tue Mar  3 23:05:14 1998
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/InfoStream.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.19	Tue Mar  3 23:05:15 1998
   Repository revision:	1.19	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)

===================================================================
File: MigrateAtomsMsg.C	Status: Up-to-date

   Working revision:	1.7	Tue Mar  3 23:05:16 1998
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/MigrateAtomsMsg.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: MigrateAtomsMsg.h	Status: Up-to-date

   Working revision:	1.8	Tue Mar  3 23:05:16 1998
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/src/MigrateAtomsMsg.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.1007	Tue Mar  3 23:05:17 1998
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/Namd.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.1009	Tue Mar  3 23:05:17 1998
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/Namd.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1014	Tue Mar  3 23:05:18 1998
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1026	Tue Mar  3 23:05:19 1998
   Repository revision:	1.1026	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1011	Tue Mar  3 23:05:19 1998
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: OwnerBox.h       	Status: Up-to-date

   Working revision:	1.2	Tue Mar  3 21:27:08 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/OwnerBox.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1018	Tue Mar  3 23:05:21 1998
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1016	Tue Mar  3 23:05:21 1998
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1013	Tue Mar  3 23:05:22 1998
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1010	Tue Mar  3 23:05:23 1998
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PositionOwnerBox.h	Status: Up-to-date

   Working revision:	1.1006	Tue Mar  3 21:27:27 1998
   Repository revision:	1.1006	/Projects/l3/cvsroot/namd2/src/PositionOwnerBox.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: ProcessorPrivate.h	Status: Up-to-date

   Working revision:	1.2	Tue Mar  3 21:22:08 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ProcessorPrivate.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1022	Tue Mar  3 23:05:24 1998
   Repository revision:	1.1022	/Projects/l3/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1010	Tue Mar  3 23:05:25 1998
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1018	Tue Mar  3 23:05:25 1998
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1024	Tue Mar  3 23:05:26 1998
   Repository revision:	1.1024	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1009	Tue Mar  3 23:05:27 1998
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.2	Tue Mar  3 21:27:40 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/ResizeArray.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SMDMsgs.h        	Status: Up-to-date

   Working revision:	1.2	Tue Mar  3 21:24:07 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/src/SMDMsgs.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1036	Tue Mar  3 23:05:29 1998
   Repository revision:	1.1036	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1043	Tue Mar  3 23:05:30 1998
   Repository revision:	1.1043	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1012	Tue Mar  3 23:05:31 1998
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1011	Tue Mar  3 23:05:31 1998
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1007	Tue Mar  3 23:05:32 1998
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.h           	Status: Up-to-date

   Working revision:	1.1003	Tue Mar  3 23:05:32 1998
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/main.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 3, 1998 @ 17:13
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/brunner/namd2/src

Modified Files:
	BroadcastMgr.C BroadcastMgr.h ComputeGlobalMsgs.h 
	LdbCoordinator.C NamdOneTools.C ResizeArrayRaw.h 
Log Message:
Changing include files for new charm++ includes



===================================================================
File: BroadcastMgr.C   	Status: Up-to-date

   Working revision:	1.8	Tue Mar  3 23:13:46 1998
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.2)

===================================================================
File: BroadcastMgr.h   	Status: Up-to-date

   Working revision:	1.7	Tue Mar  3 23:13:46 1998
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/BroadcastMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)

===================================================================
File: ComputeGlobalMsgs.h	Status: Up-to-date

   Working revision:	1.3	Tue Mar  3 23:13:47 1998
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/ComputeGlobalMsgs.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.27	Tue Mar  3 21:18:33 1998
   Repository revision:	1.27	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.11	Tue Mar  3 23:13:48 1998
   Repository revision:	1.11	/Projects/l3/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)

===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.4	Tue Mar  3 21:27:51 1998
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday March 4, 1998 @ 13:26
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	NamdOneTools.C 
Log Message:
Switched to more efficient gaussian_random_vector implementation.


===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.12	Wed Mar  4 19:26:26 1998
   Repository revision:	1.12	/Projects/r1/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)


****************************************
Date:	Wednesday March 4, 1998 @ 14:39
Author:	milind

Update of /Projects/l3/cvsroot/namd2/pvm3
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/pvm3

Modified Files:
	pvmc_comm.c 
Log Message:
fixed wrong parameter to exit() bug.


===================================================================
File: pvmc_comm.c      	Status: Up-to-date

   Working revision:	1.11	Wed Mar  4 18:54:34 1998
   Repository revision:	1.11	/Projects/l3/cvsroot/namd2/pvm3/pvmc_comm.c,v

   Existing Tags:
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.9)
	development-3            	(revision: 1.1)


****************************************
Date:	Friday March 6, 1998 @ 3:08
Author:	brunner

Update of /Projects/r1/cvsroot/namd2/ug
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	Makefile namd_copyright.tex namd_version.tex ug_add.tex 
	ug_avail.tex ug_basic.tex ug_intro.tex ug_io.tex ug_start.tex 
Log Message:
Documented new features in 2.0.  Added authors.  Still needs converse docs.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.4	Fri Mar  6 04:02:51 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namd_copyright.tex	Status: Up-to-date

   Working revision:	1.2	Fri Mar  6 03:58:58 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/ug/namd_copyright.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namd_version.tex 	Status: Up-to-date

   Working revision:	1.2	Fri Mar  6 04:04:31 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/ug/namd_version.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.2	Fri Mar  6 08:34:32 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_avail.tex     	Status: Up-to-date

   Working revision:	1.2	Fri Mar  6 09:08:09 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/ug/ug_avail.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.2	Fri Mar  6 07:03:04 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.2	Fri Mar  6 09:08:10 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.2	Fri Mar  6 05:24:05 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.2	Fri Mar  6 05:13:15 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday March 6, 1998 @ 4:25
Author:	brunner

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Sequencer.C Sequencer.h 
Log Message:
Added very basic minimizer.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1040	Fri Mar  6 10:25:27 1998
   Repository revision:	1.1040	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1014	Fri Mar  6 10:25:28 1998
   Repository revision:	1.1014	/Projects/r1/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 6, 1998 @ 5:03
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_basic.tex ug_intro.tex 
Log Message:
Added nonbondedFreq parameter.


===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.3	Fri Mar  6 10:55:20 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.3	Fri Mar  6 11:03:29 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday March 6, 1998 @ 14:55
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Broadcasts.h Controller.C Controller.h Sequencer.C Sequencer.h 
Log Message:
Added temperature coupling.


===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.3	Fri Mar  6 20:55:24 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1030	Fri Mar  6 20:55:25 1998
   Repository revision:	1.1030	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1008	Fri Mar  6 20:55:25 1998
   Repository revision:	1.1008	/Projects/r1/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1041	Fri Mar  6 20:55:26 1998
   Repository revision:	1.1041	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1015	Fri Mar  6 20:55:26 1998
   Repository revision:	1.1015	/Projects/r1/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 6, 1998 @ 15:06
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_add.tex ug_intro.tex 
Log Message:
Put temperature couple back in.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.3	Fri Mar  6 20:58:49 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.4	Fri Mar  6 21:06:31 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday March 9, 1998 @ 11:05
Author:	milind

Update of /Projects/l3/cvsroot/namd2/arch
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/arch

Modified Files:
	Makearch.g++ 
Log Message:
Fixed a few flags to confirm to the new EGCS.


===================================================================
File: Makearch.g++     	Status: Up-to-date

   Working revision:	1.5	Thu Mar  5 20:57:05 1998
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/arch/Makearch.g++,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Monday March 9, 1998 @ 11:06
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	ComputeFreeEnergy.C 
Log Message:
Included fstream.h for GCC.


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.6	Mon Mar  9 17:06:02 1998
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday March 9, 1998 @ 11:06
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/src

Modified Files:
	common.C common.h 
Log Message:
Changed prototype of ::new for GCC only.


===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1012	Mon Mar  9 17:06:46 1998
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1016	Mon Mar  9 17:06:47 1998
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 9, 1998 @ 17:42
Author:	milind

Update of /Projects/l3/cvsroot/namd2/ug
In directory polonius:/tmp_mnt/Projects/r5/milind/namd2/ug

Modified Files:
	ug_runit.tex 
Log Message:
Rewrote the entire section removing the PVM parts, and adding the converse
details.


===================================================================
File: ug_runit.tex     	Status: Up-to-date

   Working revision:	1.2	Mon Mar  9 23:42:15 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/ug/ug_runit.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday March 20, 1998 @ 17:14
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/brunner/namd2/src

Modified Files:
	LdbCoordinator.h 
Log Message:
Fixed firstldbstep, when used with firsttimestep


===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.20	Fri Mar 20 23:14:25 1998
   Repository revision:	1.20	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)


****************************************
Date:	Thursday March 26, 1998 @ 17:28
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeFreeEnergy.C ComputeFreeEnergy.h ComputeMgr.h 
	ComputeNonbondedPair.C HomePatch.C Lattice.h LdbCoordinator.C 
	PDBData.C Patch.C Patch.h ProxyMgr.C ReductionMgr.C 
	ResizeArrayRaw.h WorkDistrib.C 
Log Message:
Small changes for KCC port.  Altered use of strstream in ComputeFreeEnergy.


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.7	Thu Mar 26 23:28:26 1998
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeFreeEnergy.h	Status: Up-to-date

   Working revision:	1.5	Thu Mar 26 23:28:27 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1012	Thu Mar 26 23:28:27 1998
   Repository revision:	1.1012	/Projects/r1/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1016	Thu Mar 26 23:28:28 1998
   Repository revision:	1.1016	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1045	Thu Mar 26 23:28:29 1998
   Repository revision:	1.1045	/Projects/r1/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1005	Thu Mar 26 23:28:29 1998
   Repository revision:	1.1005	/Projects/r1/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.28	Thu Mar 26 07:59:29 1998
   Repository revision:	1.28	/Projects/r1/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: PDBData.C        	Status: Up-to-date

   Working revision:	1.1003	Thu Mar 26 23:28:31 1998
   Repository revision:	1.1003	/Projects/r1/cvsroot/namd2/src/PDBData.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1019	Thu Mar 26 23:28:32 1998
   Repository revision:	1.1019	/Projects/r1/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1011	Thu Mar 26 23:28:32 1998
   Repository revision:	1.1011	/Projects/r1/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1023	Thu Mar 26 23:28:33 1998
   Repository revision:	1.1023	/Projects/r1/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1025	Thu Mar 26 23:28:34 1998
   Repository revision:	1.1025	/Projects/r1/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.5	Thu Mar 26 23:16:12 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1044	Thu Mar 26 23:28:36 1998
   Repository revision:	1.1044	/Projects/r1/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 26, 1998 @ 19:52
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/arch

Added Files:
	Makearch.KCC 
Log Message:
Makearch for compiling with KCC (only tested under linux).


===================================================================
File: Makearch.KCC     	Status: Up-to-date

   Working revision:	1.1	Fri Mar 27 01:44:13 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday March 30, 1998 @ 15:01
Author:	brunner

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeFullDirect.C Lattice.h WorkDistrib.C 
Added Files:
	ComputeFullDirectBase.h 
Log Message:
Added nearest-image support for periodic boundary conditions to full direct.


===================================================================
File: ComputeFullDirectBase.h	Status: Up-to-date

   Working revision:	1.1	Mon Mar 30 21:01:16 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeFullDirectBase.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1014	Mon Mar 30 21:01:16 1998
   Repository revision:	1.1014	/Projects/r1/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1012)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1006	Mon Mar 30 21:01:17 1998
   Repository revision:	1.1006	/Projects/r1/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1045	Mon Mar 30 21:01:18 1998
   Repository revision:	1.1045	/Projects/r1/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 30, 1998 @ 22:55
Author:	brunner

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h Controller.h HomePatch.h NamdState.h 
	Node.C Sequencer.h SimParameters.C SimParameters.h 
Added Files:
	TestController.C TestController.h TestSequencer.C 
	TestSequencer.h 
Log Message:
Added test mode, fixed errors in virial with full electrostatics.


===================================================================
File: TestController.C 	Status: Up-to-date

   Working revision:	1.1	Tue Mar 31 04:55:48 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/TestController.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: TestController.h 	Status: Up-to-date

   Working revision:	1.1	Tue Mar 31 04:55:49 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/TestController.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: TestSequencer.C  	Status: Up-to-date

   Working revision:	1.1	Tue Mar 31 04:55:50 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/TestSequencer.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: TestSequencer.h  	Status: Up-to-date

   Working revision:	1.1	Tue Mar 31 04:55:50 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/TestSequencer.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1032	Tue Mar 31 04:55:43 1998
   Repository revision:	1.1032	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1009	Tue Mar 31 04:55:44 1998
   Repository revision:	1.1009	/Projects/r1/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1016	Tue Mar 31 04:55:44 1998
   Repository revision:	1.1016	/Projects/r1/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1008	Tue Mar 31 04:55:45 1998
   Repository revision:	1.1008	/Projects/r1/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1027	Tue Mar 31 04:55:46 1998
   Repository revision:	1.1027	/Projects/r1/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1016	Tue Mar 31 04:55:46 1998
   Repository revision:	1.1016	/Projects/r1/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1037	Tue Mar 31 04:55:47 1998
   Repository revision:	1.1037	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1019	Tue Mar 31 04:55:48 1998
   Repository revision:	1.1019	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 30, 1998 @ 22:56
Author:	brunner

Update of /Projects/r1/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added TestController and TestSequencer.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.13	Tue Mar 31 02:02:16 1998
   Repository revision:	1.13	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1060	Tue Mar 31 01:56:38 1998
   Repository revision:	1.1060	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 2, 1998 @ 17:54
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	LdbCoordinator.h 
Log Message:
Subtracted firstTimeStep from N in balanceNow().


===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.21	Thu Apr  2 23:54:06 1998
   Repository revision:	1.21	/Projects/r1/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)


****************************************
Date:	Monday April 6, 1998 @ 11:33
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added DPME.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.14	Thu Apr  2 23:55:35 1998
   Repository revision:	1.14	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1061	Thu Apr  2 23:55:36 1998
   Repository revision:	1.1061	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 6, 1998 @ 11:33
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpme2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpme2

Modified Files:
	Makefile cffti1.c 
Log Message:
Added DPME.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.7	Thu Mar 12 22:59:15 1998
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.5)

===================================================================
File: cffti1.c         	Status: Up-to-date

   Working revision:	1.4	Thu Mar 12 17:53:27 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/dpme2/cffti1.c,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.3)


****************************************
Date:	Monday April 6, 1998 @ 11:34
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeMap.h ComputeMgr.C ComputeNonbondedBase.h 
	ComputeNonbondedUtil.C ComputeNonbondedUtil.h Controller.C 
	Lattice.h ReductionMgr.h Sequencer.C SimParameters.C 
	SimParameters.h TestController.C TestSequencer.C WorkDistrib.C 
Log Message:
Added DPME (single processor only), test mode, and momenta printing.


===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1014	Mon Apr  6 16:34:04 1998
   Repository revision:	1.1014	/Projects/r1/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1021	Mon Apr  6 16:34:04 1998
   Repository revision:	1.1021	/Projects/r1/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1033	Mon Apr  6 16:34:05 1998
   Repository revision:	1.1033	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1016	Mon Apr  6 16:34:06 1998
   Repository revision:	1.1016	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1015	Mon Apr  6 16:34:07 1998
   Repository revision:	1.1015	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1031	Mon Apr  6 16:34:07 1998
   Repository revision:	1.1031	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1007	Mon Apr  6 16:34:08 1998
   Repository revision:	1.1007	/Projects/r1/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1010	Mon Apr  6 16:34:08 1998
   Repository revision:	1.1010	/Projects/r1/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1042	Mon Apr  6 16:34:09 1998
   Repository revision:	1.1042	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1038	Mon Apr  6 16:34:10 1998
   Repository revision:	1.1038	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1020	Mon Apr  6 16:34:11 1998
   Repository revision:	1.1020	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: TestController.C 	Status: Up-to-date

   Working revision:	1.2	Mon Apr  6 16:34:12 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/TestController.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: TestSequencer.C  	Status: Up-to-date

   Working revision:	1.2	Mon Apr  6 16:34:12 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/TestSequencer.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1046	Mon Apr  6 16:34:13 1998
   Repository revision:	1.1046	/Projects/r1/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 6, 1998 @ 18:53
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedUtil.C 
Log Message:
Definitions of new static variables.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1017	Mon Apr  6 23:53:00 1998
   Repository revision:	1.1017	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 6, 1998 @ 18:53
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpme2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpme2

Modified Files:
	Makefile 
Log Message:
Made Makefile (more) portable.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.8	Mon Apr  6 23:32:00 1998
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.5)


****************************************
Date:	Monday April 6, 1998 @ 19:52
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Added Files:
	ComputeDPME.C ComputeDPME.h 
Log Message:
Added DPME interface.


===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.1	Tue Apr  7 00:52:37 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDPME.h    	Status: Up-to-date

   Working revision:	1.1	Tue Apr  7 00:52:38 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeDPME.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday April 9, 1998 @ 23:15
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Finished incorporating DPME.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.15	Wed Apr  8 21:38:52 1998
   Repository revision:	1.15	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1062	Wed Apr  8 21:36:14 1998
   Repository revision:	1.1062	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 9, 1998 @ 23:15
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/arch

Modified Files:
	Makearch.KCC 
Log Message:
Finished incorporating DPME.


===================================================================
File: Makearch.KCC     	Status: Up-to-date

   Working revision:	1.2	Wed Apr  8 18:05:54 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday April 9, 1998 @ 23:15
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpme2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpme2

Modified Files:
	Makefile dpme2.h dpme2_utilityW.c f2c.h pmesh_kspace2.c 
Log Message:
Finished incorporating DPME.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.9	Tue Apr  7 00:26:34 1998
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.5)

===================================================================
File: dpme2.h          	Status: Up-to-date

   Working revision:	1.4	Wed Apr  8 19:34:48 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/dpme2/dpme2.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.3)

===================================================================
File: dpme2_utilityW.c 	Status: Up-to-date

   Working revision:	1.3	Fri Apr 10 04:15:47 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/dpme2/dpme2_utilityW.c,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: f2c.h            	Status: Up-to-date

   Working revision:	1.4	Wed Apr  8 17:51:24 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/dpme2/f2c.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.3)

===================================================================
File: pmesh_kspace2.c  	Status: Up-to-date

   Working revision:	1.5	Wed Apr  8 17:49:24 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/dpme2/pmesh_kspace2.c,v

   Existing Tags:
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)


****************************************
Date:	Thursday April 9, 1998 @ 23:16
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeDPME.C ComputeDPME.h ComputeHomePatches.h ComputeMgr.C 
	ComputeMgr.ci ComputeMgr.h ComputeNonbondedUtil.C 
Added Files:
	ComputeDPMEMsgs.C ComputeDPMEMsgs.h 
Log Message:
Finished incorporating DPME.


===================================================================
File: ComputeDPMEMsgs.C	Status: Up-to-date

   Working revision:	1.1	Fri Apr 10 04:15:58 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeDPMEMsgs.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDPMEMsgs.h	Status: Up-to-date

   Working revision:	1.1	Fri Apr 10 04:15:58 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeDPMEMsgs.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.2	Fri Apr 10 04:15:57 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDPME.h    	Status: Up-to-date

   Working revision:	1.2	Fri Apr 10 04:15:57 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/ComputeDPME.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.1004	Fri Apr 10 04:15:59 1998
   Repository revision:	1.1004	/Projects/r1/cvsroot/namd2/src/ComputeHomePatches.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1022	Fri Apr 10 04:15:59 1998
   Repository revision:	1.1022	/Projects/r1/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.ci    	Status: Up-to-date

   Working revision:	1.1005	Fri Apr 10 04:16:00 1998
   Repository revision:	1.1005	/Projects/r1/cvsroot/namd2/src/ComputeMgr.ci,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1013	Fri Apr 10 04:16:01 1998
   Repository revision:	1.1013	/Projects/r1/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1018	Fri Apr 10 04:16:01 1998
   Repository revision:	1.1018	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 13, 1998 @ 22:18
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Fixed up MDCOMM code.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.16	Thu Apr  9 19:13:46 1998
   Repository revision:	1.16	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1063	Thu Apr  9 19:09:09 1998
   Repository revision:	1.1063	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 13, 1998 @ 22:18
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/arch

Modified Files:
	Makearch.HPUX10 Makearch.Origin2000 
Log Message:
Fixed up MDCOMM code.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.8	Mon Apr 13 02:07:40 1998
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.7	Mon Apr 13 02:07:57 1998
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Monday April 13, 1998 @ 22:19
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C MStream.h Output.C Output.h 
Log Message:
Fixed up MDCOMM code.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1032	Tue Apr 14 03:19:20 1998
   Repository revision:	1.1032	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MStream.h        	Status: Up-to-date

   Working revision:	1.3	Thu Apr  9 16:16:06 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/MStream.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.13	Tue Apr 14 03:19:22 1998
   Repository revision:	1.13	/Projects/r1/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Output.h         	Status: Up-to-date

   Working revision:	1.5	Tue Apr 14 03:19:23 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/Output.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday April 14, 1998 @ 0:58
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h HomePatch.C NamdTypes.h Patch.C Patch.h 
Log Message:
Added automatic correction if hgroupCutoff is too small.  No more warnings.
However, performance wil degrade if many groups are below cutoff size.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1034	Tue Apr 14 05:58:24 1998
   Repository revision:	1.1034	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1046	Tue Apr 14 05:58:24 1998
   Repository revision:	1.1046	/Projects/r1/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1009	Tue Apr 14 05:58:25 1998
   Repository revision:	1.1009	/Projects/r1/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1020	Tue Apr 14 05:58:26 1998
   Repository revision:	1.1020	/Projects/r1/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1012	Tue Apr 14 05:58:26 1998
   Repository revision:	1.1012	/Projects/r1/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 14, 1998 @ 15:08
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Patch.C 
Log Message:
Slight performance improvement in group size check.


===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1021	Tue Apr 14 20:08:09 1998
   Repository revision:	1.1021	/Projects/r1/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 15, 1998 @ 17:12
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Allowed to compile thread files -g if compiler causes errors.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.17	Wed Apr 15 15:54:39 1998
   Repository revision:	1.17	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1064	Wed Apr 15 16:24:34 1998
   Repository revision:	1.1064	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 15, 1998 @ 17:12
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/arch

Modified Files:
	Makearch.HPUX10 Makearch.HPUX9 Makearch.KCC 
	Makearch.Origin2000 Makearch.SP3 Makearch.Solaris Makearch.T3E 
	Makearch.g++ Makearch.template 
Log Message:
Allowed to compile thread files -g if compiler causes errors.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.9	Wed Apr 15 13:56:00 1998
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)

===================================================================
File: Makearch.HPUX9   	Status: Up-to-date

   Working revision:	1.4	Wed Apr 15 16:57:54 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/arch/Makearch.HPUX9,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.KCC     	Status: Up-to-date

   Working revision:	1.3	Wed Apr 15 16:58:31 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.8	Wed Apr 15 16:19:12 1998
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.SP3     	Status: Up-to-date

   Working revision:	1.4	Wed Apr 15 16:59:05 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/arch/Makearch.SP3,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.5	Wed Apr 15 16:59:20 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.6	Wed Apr 15 17:05:18 1998
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	release-alpha-1          	(revision: 1.4)

===================================================================
File: Makearch.g++     	Status: Up-to-date

   Working revision:	1.6	Wed Apr 15 17:05:26 1998
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/arch/Makearch.g++,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.template	Status: Up-to-date

   Working revision:	1.4	Wed Apr 15 17:05:39 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/arch/Makearch.template,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Wednesday April 15, 1998 @ 17:13
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeDPME.C ComputeDPME.h ComputeDPMTA.C ComputeDPMTA.h 
	ComputeTcl.C Output.h TclCommands.C TclCommands.h 
Log Message:
Make depends returns same results regardless of DPME, DPMTA, TCL or MDCOMM.


===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.3	Wed Apr 15 22:13:49 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDPME.h    	Status: Up-to-date

   Working revision:	1.3	Wed Apr 15 22:13:50 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/ComputeDPME.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1049	Wed Apr 15 22:13:50 1998
   Repository revision:	1.1049	/Projects/r1/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1018	Wed Apr 15 22:13:51 1998
   Repository revision:	1.1018	/Projects/r1/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1017)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.7	Wed Apr 15 22:13:52 1998
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Output.h         	Status: Up-to-date

   Working revision:	1.6	Wed Apr 15 22:13:52 1998
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/src/Output.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)
	development-3            	(revision: 1.1)

===================================================================
File: TclCommands.C    	Status: Up-to-date

   Working revision:	1.3	Wed Apr 15 22:13:53 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/TclCommands.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: TclCommands.h    	Status: Up-to-date

   Working revision:	1.2	Wed Apr 15 22:13:53 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/TclCommands.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday April 15, 1998 @ 17:16
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Added Files:
	mdcomm.C mdcomm.h 
Log Message:
Additional functions for MDComm.


===================================================================
File: mdcomm.C         	Status: Up-to-date

   Working revision:	1.1	Wed Apr 15 13:46:38 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/mdcomm.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mdcomm.h         	Status: Up-to-date

   Working revision:	1.1	Wed Apr 15 13:50:58 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/mdcomm.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday April 15, 1998 @ 17:21
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeMgr.C 
Log Message:
Make depend should give same result regardless of DPMTA or DPME.


===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1023	Wed Apr 15 22:21:36 1998
   Repository revision:	1.1023	/Projects/r1/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 21, 1998 @ 11:18
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Fixed bug for residue numbers of form A000 generated by X-plor (again).


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1025	Tue Apr 21 16:18:14 1998
   Repository revision:	1.1025	/Projects/r1/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 27, 1998 @ 16:52
Author:	milind

Update of /Projects/l3/cvsroot/namd2/arch
In directory hamlet:/tmp/cvs-serv12678/arch

Added Files:
	Makearch.exemplar 
Log Message:
Added exemplar version.


===================================================================
File: Makearch.exemplar	Status: Up-to-date

   Working revision:	1.1	Mon Apr 27 21:52:25 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/arch/Makearch.exemplar,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday April 27, 1998 @ 16:52
Author:	milind

Update of /Projects/l3/cvsroot/namd2/dpme2
In directory hamlet:/tmp/cvs-serv12678/dpme2

Modified Files:
	Makefile 
Log Message:
Added exemplar version.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.10	Mon Apr 27 21:52:25 1998
   Repository revision:	1.10	/Projects/l3/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.5)


****************************************
Date:	Wednesday April 29, 1998 @ 23:52
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added ComputeMDComm for forces from VMD.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.18	Thu Apr 30 03:33:24 1998
   Repository revision:	1.18	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1065	Sat Apr 25 22:49:51 1998
   Repository revision:	1.1065	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 29, 1998 @ 23:53
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeFreeEnergy.C ComputeFreeEnergy.h ComputeGlobal.C 
	Molecule.C Molecule.h Output.C SimParameters.C 
Added Files:
	ComputeMDComm.C ComputeMDComm.h 
Log Message:
Added forces from MDComm and other improvements to ComputeGlobal.


===================================================================
File: ComputeMDComm.C  	Status: Up-to-date

   Working revision:	1.1	Thu Apr 30 04:53:23 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeMDComm.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMDComm.h  	Status: Up-to-date

   Working revision:	1.1	Thu Apr 30 04:53:23 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeMDComm.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.8	Thu Apr 30 04:53:22 1998
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeFreeEnergy.h	Status: Up-to-date

   Working revision:	1.6	Thu Apr 30 04:53:22 1998
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.10	Thu Apr 30 04:53:22 1998
   Repository revision:	1.10	/Projects/r1/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1026	Thu Apr 30 04:53:25 1998
   Repository revision:	1.1026	/Projects/r1/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1019	Thu Apr 30 04:53:27 1998
   Repository revision:	1.1019	/Projects/r1/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.14	Thu Apr 30 04:53:28 1998
   Repository revision:	1.14	/Projects/r1/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1039	Thu Apr 30 04:53:31 1998
   Repository revision:	1.1039	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 7, 1998 @ 15:12
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/arch
In directory hamlet:/tmp/cvs-serv10137

Modified Files:
	Makearch.T3E 
Log Message:
Changed -O to -O2, just in case the documentation is right, and -O alone
does nothing.


===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.7	Thu May  7 20:12:23 1998
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	release-alpha-1          	(revision: 1.4)


****************************************
Date:	Friday May 15, 1998 @ 11:18
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2_std

Modified Files:
	Make.depends 
Log Message:
Made Controller suspend during load balancing (for reduction system).


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.19	Fri May 15 16:11:12 1998
   Repository revision:	1.19	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Friday May 15, 1998 @ 11:19
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2_std/src

Modified Files:
	Communicate.C Communicate.h Controller.C LdbCoordinator.C 
	LdbCoordinator.h ReductionMgr.C 
Log Message:
Made Controller suspend during load balancing (for reduction system).


===================================================================
File: Communicate.C    	Status: Up-to-date

   Working revision:	1.1004	Fri May 15 05:14:56 1998
   Repository revision:	1.1004	/Projects/r1/cvsroot/namd2/src/Communicate.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Communicate.h    	Status: Up-to-date

   Working revision:	1.1004	Fri May 15 05:01:08 1998
   Repository revision:	1.1004	/Projects/r1/cvsroot/namd2/src/Communicate.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1033	Fri May 15 16:19:03 1998
   Repository revision:	1.1033	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.29	Fri May 15 05:17:59 1998
   Repository revision:	1.29	/Projects/r1/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.22	Fri May 15 16:19:04 1998
   Repository revision:	1.22	/Projects/r1/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1026	Fri May 15 16:19:05 1998
   Repository revision:	1.1026	/Projects/r1/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 21, 1998 @ 13:44
Author:	milind

Update of /Projects/l3/cvsroot/namd2/arch
In directory polonius:/tmp_mnt/Projects/r5/milind/old/namd2/arch

Modified Files:
	Makearch.HPUX10 Makearch.HPUX9 Makearch.Origin2000 
	Makearch.Solaris Makearch.g++ 
Log Message:
Fixed to point to the correct permanent charm location.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.10	Thu May 21 18:45:32 1998
   Repository revision:	1.10	/Projects/l3/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)

===================================================================
File: Makearch.HPUX9   	Status: Up-to-date

   Working revision:	1.5	Thu May 21 18:45:56 1998
   Repository revision:	1.5	/Projects/l3/cvsroot/namd2/arch/Makearch.HPUX9,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.9	Thu May 21 18:46:18 1998
   Repository revision:	1.9	/Projects/l3/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.6	Thu May 21 18:45:10 1998
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.g++     	Status: Up-to-date

   Working revision:	1.7	Thu May 21 18:46:47 1998
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/arch/Makearch.g++,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Thursday May 21, 1998 @ 13:44
Author:	milind

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Projects/r5/milind/old/namd2/src

Modified Files:
	Communicate.C 
Log Message:
Fixed (void**) bug.


===================================================================
File: Communicate.C    	Status: Up-to-date

   Working revision:	1.1005	Thu May 21 18:44:16 1998
   Repository revision:	1.1005	/Projects/l3/cvsroot/namd2/src/Communicate.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 21, 1998 @ 16:41
Author:	hurwitz

Update of /Projects/r1/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Projects/namd2/Programmers/hurwitz/namd2/src

Added Files:
	FreeEnergyAssert.C FreeEnergyAssert.h FreeEnergyEnums.h 
	FreeEnergyGroup.C FreeEnergyGroup.h FreeEnergyLambdMgr.C 
	FreeEnergyLambdMgr.h FreeEnergyLambda.C FreeEnergyLambda.h 
	FreeEnergyMain.C FreeEnergyParse.C FreeEnergyParse.h 
	FreeEnergyRMgr.C FreeEnergyRMgr.h FreeEnergyRestrain.C 
	FreeEnergyRestrain.h FreeEnergyVector.C FreeEnergyVector.h 
Log Message:
initial check in of all my code for fixed and forcing restraints.
-Dave Hurwitz


===================================================================
File: FreeEnergyAssert.C	Status: Up-to-date

   Working revision:	1.1	Mon May 18 18:34:30 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyAssert.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyAssert.h	Status: Up-to-date

   Working revision:	1.1	Wed May 13 17:37:49 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyAssert.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyEnums.h	Status: Up-to-date

   Working revision:	1.1	Wed May 13 17:37:49 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyEnums.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyGroup.C	Status: Up-to-date

   Working revision:	1.1	Wed May 13 17:37:49 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyGroup.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyGroup.h	Status: Up-to-date

   Working revision:	1.1	Wed May 13 17:37:49 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyGroup.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambdMgr.C	Status: Up-to-date

   Working revision:	1.1	Wed May 13 17:37:49 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambdMgr.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambdMgr.h	Status: Up-to-date

   Working revision:	1.1	Wed May 13 17:37:49 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambdMgr.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambda.C	Status: Up-to-date

   Working revision:	1.1	Mon May 18 21:00:48 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambda.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambda.h	Status: Up-to-date

   Working revision:	1.1	Wed May 13 17:37:49 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambda.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyMain.C 	Status: Up-to-date

   Working revision:	1.1	Wed May 13 17:37:49 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyMain.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyParse.C	Status: Up-to-date

   Working revision:	1.1	Thu May 21 16:21:30 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyParse.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyParse.h	Status: Up-to-date

   Working revision:	1.1	Mon May 18 19:02:03 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyParse.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyRMgr.C 	Status: Up-to-date

   Working revision:	1.1	Tue May 19 16:57:58 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyRMgr.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyRMgr.h 	Status: Up-to-date

   Working revision:	1.1	Tue May 19 16:16:57 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyRMgr.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyRestrain.C	Status: Up-to-date

   Working revision:	1.1	Thu May 21 19:45:13 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyRestrain.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyRestrain.h	Status: Up-to-date

   Working revision:	1.1	Tue May 19 16:19:21 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyRestrain.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyVector.C	Status: Up-to-date

   Working revision:	1.1	Tue May 19 16:03:14 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyVector.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyVector.h	Status: Up-to-date

   Working revision:	1.1	Tue May 19 15:59:21 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/FreeEnergyVector.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday May 21, 1998 @ 17:37
Author:	hurwitz

Update of /Projects/r1/cvsroot/namd2
In directory hamlet:/tmp_mnt/Projects/namd2/Programmers/hurwitz/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
initial check in of code for fixed and forcing restraints
-Dave Hurwitz


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.20	Thu May 21 21:55:18 1998
   Repository revision:	1.20	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1066	Wed May 13 17:47:36 1998
   Repository revision:	1.1066	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 21, 1998 @ 17:37
Author:	hurwitz

Update of /Projects/r1/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Projects/namd2/Programmers/hurwitz/namd2/src

Modified Files:
	ComputeFreeEnergy.C ComputeFreeEnergy.h 
Log Message:
initial check in of code for fixed and forcing restraints
-Dave Hurwitz


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.9	Thu May 21 22:37:31 1998
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeFreeEnergy.h	Status: Up-to-date

   Working revision:	1.7	Thu May 21 22:37:32 1998
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday May 21, 1998 @ 17:43
Author:	hurwitz

Update of /Projects/r1/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Projects/namd2/Programmers/hurwitz/namd2/src

Modified Files:
	ComputeGlobal.C 
Log Message:
initial check in of fixed and forcing restraints
-Dave Hurwitz


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.11	Thu May 21 22:43:23 1998
   Repository revision:	1.11	/Projects/r1/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday May 21, 1998 @ 19:34
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Namd.C Namd.h 
Log Message:
Fixed final timing when load balancing is used.


===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.1008	Fri May 22 00:33:58 1998
   Repository revision:	1.1008	/Projects/r1/cvsroot/namd2/src/Namd.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.1010	Fri May 22 00:33:59 1998
   Repository revision:	1.1010	/Projects/r1/cvsroot/namd2/src/Namd.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday May 22, 1998 @ 14:08
Author:	hurwitz

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/hurwitz/namd2/src

Modified Files:
	ComputeFreeEnergy.C FreeEnergyLambdMgr.C FreeEnergyLambdMgr.h 
	FreeEnergyLambda.C FreeEnergyLambda.h 
Log Message:
Do NAMD_die if there aren't enough steps to complete all pmf & mcti blocks


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.10	Fri May 22 19:08:29 1998
   Repository revision:	1.10	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambdMgr.C	Status: Up-to-date

   Working revision:	1.2	Fri May 22 19:08:30 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambdMgr.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambdMgr.h	Status: Up-to-date

   Working revision:	1.2	Fri May 22 19:08:30 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambdMgr.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambda.C	Status: Up-to-date

   Working revision:	1.2	Fri May 22 19:08:31 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambda.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambda.h	Status: Up-to-date

   Working revision:	1.2	Fri May 22 19:08:31 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambda.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday May 25, 1998 @ 16:13
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	FreeEnergyGroup.h FreeEnergyRMgr.h FreeEnergyRestrain.h 
Log Message:
Fixed compile warnings.


===================================================================
File: FreeEnergyGroup.h	Status: Up-to-date

   Working revision:	1.2	Fri May 22 16:30:59 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/FreeEnergyGroup.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyRMgr.h 	Status: Up-to-date

   Working revision:	1.2	Fri May 22 16:32:08 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/FreeEnergyRMgr.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyRestrain.h	Status: Up-to-date

   Working revision:	1.2	Fri May 22 16:31:25 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/FreeEnergyRestrain.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday May 25, 1998 @ 16:10
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	main.C common.C Namd.h 
Log Message:
Started using CmiAbort().


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1008	Mon May 25 21:10:35 1998
   Repository revision:	1.1008	/Projects/r1/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1013	Mon May 25 21:10:36 1998
   Repository revision:	1.1013	/Projects/r1/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.1011	Mon May 25 21:10:36 1998
   Repository revision:	1.1011	/Projects/r1/cvsroot/namd2/src/Namd.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday May 25, 1998 @ 16:22
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	PDB.C PDB.h WorkDistrib.C 
Log Message:
Use 99% bounding box unless FMA is active.  Avoids huge number of
patches when a small number of atoms have drifted off.


===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1004	Mon May 25 21:22:03 1998
   Repository revision:	1.1004	/Projects/r1/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.h            	Status: Up-to-date

   Working revision:	1.1002	Mon May 25 21:22:04 1998
   Repository revision:	1.1002	/Projects/r1/cvsroot/namd2/src/PDB.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1047	Mon May 25 21:22:04 1998
   Repository revision:	1.1047	/Projects/r1/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday May 25, 1998 @ 16:55
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeFreeEnergy.C ComputeFreeEnergy.h 
Log Message:
Eliminated compile errors in KCC by avoiding use of istrstream.


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.11	Mon May 25 21:55:04 1998
   Repository revision:	1.11	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeFreeEnergy.h	Status: Up-to-date

   Working revision:	1.8	Mon May 25 21:55:05 1998
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday May 26, 1998 @ 19:02
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/arch

Modified Files:
	Makearch.KCC 
Log Message:
Switched to standard charm location.


===================================================================
File: Makearch.KCC     	Status: Up-to-date

   Working revision:	1.4	Tue May 26 22:44:20 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 29, 1998 @ 17:29
Author:	hurwitz

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/hurwitz/namd2/src

Modified Files:
	FreeEnergyParse.C 
Log Message:
corrected v.small bug reading position restraints


===================================================================
File: FreeEnergyParse.C	Status: Up-to-date

   Working revision:	1.2	Fri May 29 22:29:15 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/FreeEnergyParse.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 29, 1998 @ 17:31
Author:	hurwitz

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/hurwitz/namd2/src

Modified Files:
	FreeEnergyRestrain.C 
Log Message:
made corrections so dihedral restraints work with negative angles
(i.e. a full 360 degrees -- from -pi to +pi)


===================================================================
File: FreeEnergyRestrain.C	Status: Up-to-date

   Working revision:	1.2	Fri May 29 22:31:18 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/FreeEnergyRestrain.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday June 2, 1998 @ 15:39
Author:	brunner

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/hurwitz/namd2/src

Modified Files:
	FreeEnergyRestrain.C 
Log Message:
corrected bug concerning distribution of force from center-of-mass out to
component atoms


===================================================================
File: FreeEnergyRestrain.C	Status: Up-to-date

   Working revision:	1.3	Tue Jun  2 20:39:04 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/FreeEnergyRestrain.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday June 3, 1998 @ 15:09
Author:	hurwitz

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/hurwitz/namd2/src

Modified Files:
	FreeEnergyRestrain.C 
Log Message:
changed sign of dihedral angle so it conforms to convention


===================================================================
File: FreeEnergyRestrain.C	Status: Up-to-date

   Working revision:	1.4	Wed Jun  3 20:09:53 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/FreeEnergyRestrain.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday June 5, 1998 @ 16:10
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/brunner/namd2/src

Modified Files:
	Rebalancer.C Rebalancer.h elements.h 
Log Message:
Checking in bug fixes



===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.16	Fri Jun  5 20:43:26 1998
   Repository revision:	1.16	/Projects/l3/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: Rebalancer.h     	Status: Up-to-date

   Working revision:	1.3	Fri May 29 19:59:14 1998
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/Rebalancer.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: elements.h       	Status: Up-to-date

   Working revision:	1.3	Fri May 29 19:58:36 1998
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/elements.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)


****************************************
Date:	Friday June 5, 1998 @ 17:54
Author:	hurwitz

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/hurwitz/namd2/src

Modified Files:
	ComputeFreeEnergy.C FreeEnergyLambdMgr.C FreeEnergyLambdMgr.h 
	FreeEnergyLambda.C FreeEnergyLambda.h FreeEnergyRMgr.C 
	FreeEnergyRMgr.h 
Log Message:
accumulate dU/dLambda for free energy calculation


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.12	Fri Jun  5 22:54:38 1998
   Repository revision:	1.12	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambdMgr.C	Status: Up-to-date

   Working revision:	1.3	Fri Jun  5 22:54:39 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambdMgr.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambdMgr.h	Status: Up-to-date

   Working revision:	1.3	Fri Jun  5 22:54:40 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambdMgr.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambda.C	Status: Up-to-date

   Working revision:	1.3	Fri Jun  5 22:54:40 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambda.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambda.h	Status: Up-to-date

   Working revision:	1.3	Fri Jun  5 22:54:41 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambda.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyRMgr.C 	Status: Up-to-date

   Working revision:	1.2	Fri Jun  5 22:54:41 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/FreeEnergyRMgr.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyRMgr.h 	Status: Up-to-date

   Working revision:	1.3	Fri Jun  5 22:54:42 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/FreeEnergyRMgr.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday June 9, 1998 @ 17:00
Author:	brunner

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/hurwitz/namd2/src

Modified Files:
	FreeEnergyLambda.C 
Log Message:
small fix:  if Lambda is decreasing, dLambda is negative


===================================================================
File: FreeEnergyLambda.C	Status: Up-to-date

   Working revision:	1.4	Tue Jun  9 22:00:17 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambda.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday June 16, 1998 @ 14:15
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/ug
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/brunner/namd2/ug

Modified Files:
	ug_add.tex ug_basic.tex 
Log Message:
Added SMD docs from Sergei



===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.4	Tue Jun 16 19:07:23 1998
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.4	Tue Jun 16 19:10:02 1998
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday June 18, 1998 @ 9:44
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	BroadcastMgr.h BroadcastObject.h Patch.C PatchMap.C PatchMap.h 
	defmain.C heap.C heap.h 
Log Message:
Eliminated warnings and errors from aCC.


===================================================================
File: BroadcastMgr.h   	Status: Up-to-date

   Working revision:	1.8	Thu Jun 18 14:44:33 1998
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/src/BroadcastMgr.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)

===================================================================
File: BroadcastObject.h	Status: Up-to-date

   Working revision:	1.4	Wed Jun 17 16:34:17 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/BroadcastObject.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1022	Thu Jun 18 14:44:34 1998
   Repository revision:	1.1022	/Projects/r1/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1017	Thu Jun 18 14:44:35 1998
   Repository revision:	1.1017	/Projects/r1/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1009	Thu Jun 18 14:44:36 1998
   Repository revision:	1.1009	/Projects/r1/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: defmain.C        	Status: Up-to-date

   Working revision:	1.2	Wed Jun 17 22:44:20 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/defmain.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: heap.C           	Status: Up-to-date

   Working revision:	1.3	Wed Jun 17 21:45:44 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/heap.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: heap.h           	Status: Up-to-date

   Working revision:	1.3	Wed Jun 17 21:43:18 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/heap.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)


****************************************
Date:	Thursday June 18, 1998 @ 10:25
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Controller.C 
Log Message:
Workaround for aCC - put FORMAT()'s on separate lines.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1035	Thu Jun 18 15:25:22 1998
   Repository revision:	1.1035	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday June 18, 1998 @ 10:42
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpme2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/dpme2

Modified Files:
	dpme2def.h 
Log Message:
Avoided conflict between defs of PI which caused error in aCC.


===================================================================
File: dpme2def.h       	Status: Up-to-date

   Working revision:	1.4	Tue Jun 16 16:16:25 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/dpme2/dpme2def.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.3)


****************************************
Date:	Wednesday June 24, 1998 @ 18:40
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/brunner/namd2/src

Modified Files:
	LdbCoordinator.C Patch.C PatchMap.C PatchMap.h 
Log Message:
Added downstreamNeighbors() and LdbCoordinator fixes.  I don't know
why Patch.C is different.



===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.30	Wed Jun 24 23:22:20 1998
   Repository revision:	1.30	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1023	Wed Jun 24 23:40:32 1998
   Repository revision:	1.1023	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1018	Wed Jun 24 23:40:33 1998
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1010	Wed Jun 24 23:40:33 1998
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday June 25, 1998 @ 9:00
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Projects/namd2/Programmers/brunner/namd2/src

Modified Files:
	Patch.C 
Log Message:
Removed extra print



===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1024	Thu Jun 25 14:00:39 1998
   Repository revision:	1.1024	/Projects/l3/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday June 28, 1998 @ 12:30
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeHomeTuples.h 
Log Message:
Set basePriority of ComputeHomeTuples to 0.


===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1013	Sun Jun 28 17:24:54 1998
   Repository revision:	1.1013	/Projects/r1/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday June 28, 1998 @ 12:53
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Workaround for computes returning -1 for their sequence number.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1048	Sun Jun 28 17:53:04 1998
   Repository revision:	1.1048	/Projects/r1/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday June 28, 1998 @ 16:52
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Added 128 to priority of all enqueueWork messages.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1049	Sun Jun 28 21:52:06 1998
   Repository revision:	1.1049	/Projects/r1/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday June 29, 1998 @ 16:59
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/brunner/namd2/src

Modified Files:
	AlgSeven.C 
Log Message:
Important changes to indentation...


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.11	Mon Jun 29 21:37:58 1998
   Repository revision:	1.11	/Projects/l3/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)


****************************************
Date:	Thursday July 2, 1998 @ 16:00
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/brunner/namd2/src

Modified Files:
	WorkDistrib.C WorkDistrib.h 
Log Message:
Changed initial patch distribution, should work on more PES



===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1050	Thu Jul  2 21:00:02 1998
   Repository revision:	1.1050	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1013	Thu Jul  2 21:00:03 1998
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 2, 1998 @ 16:06
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedSelf.C 
	ComputeNonbondedSelf.h ComputeNonbondedUtil.h 
Log Message:
Added support for splitting ComputeNonbondedSelf into multiple computes.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1035	Thu Jul  2 21:06:35 1998
   Repository revision:	1.1035	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1011	Thu Jul  2 21:06:36 1998
   Repository revision:	1.1011	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.1006	Thu Jul  2 21:06:37 1998
   Repository revision:	1.1006	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1016	Thu Jul  2 21:06:37 1998
   Repository revision:	1.1016	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday July 3, 1998 @ 15:09
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/brunner/namd2/src

Modified Files:
	Compute.C Compute.h ComputeMap.C ComputeMap.h ComputeMgr.C 
	WorkDistrib.C WorkDistrib.ci WorkDistrib.h 
Log Message:
Self-compute spliting creation changes.  I hope this works.


===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1017	Fri Jul  3 20:09:48 1998
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1011	Fri Jul  3 20:09:50 1998
   Repository revision:	1.1011	/Projects/l3/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1016	Fri Jul  3 20:09:51 1998
   Repository revision:	1.1016	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1013)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1015	Fri Jul  3 20:09:52 1998
   Repository revision:	1.1015	/Projects/l3/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1024	Fri Jul  3 20:09:53 1998
   Repository revision:	1.1024	/Projects/l3/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1051	Fri Jul  3 20:09:55 1998
   Repository revision:	1.1051	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1007	Fri Jul  3 20:09:56 1998
   Repository revision:	1.1007	/Projects/l3/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1014	Fri Jul  3 20:09:56 1998
   Repository revision:	1.1014	/Projects/l3/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday July 3, 1998 @ 17:32
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Bug fixes for compute self splitting.  N.B. i_upper is numAtoms - 1.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1036	Fri Jul  3 22:32:06 1998
   Repository revision:	1.1036	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday July 3, 1998 @ 18:13
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/brunner/namd2/src

Modified Files:
	ComputeMap.C WorkDistrib.C 
Log Message:
Bug fixes put in.  Will load balancing work???


===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1017	Fri Jul  3 23:13:40 1998
   Repository revision:	1.1017	/Projects/l3/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1013)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1052	Fri Jul  3 23:13:41 1998
   Repository revision:	1.1052	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday July 3, 1998 @ 18:48
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/brunner/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Changed Self compute granularity to 30000


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1053	Fri Jul  3 23:48:28 1998
   Repository revision:	1.1053	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday July 6, 1998 @ 14:16
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/arch
In directory hamlet:/tmp/cvs-serv445/arch

Modified Files:
	Makearch.T3E 
Log Message:
Changed path info in Makearch.T3E, changed patch partition equation,
and added timing prints to Controller



===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.8	Mon Jul  6 19:16:54 1998
   Repository revision:	1.8	/Projects/l3/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	release-alpha-1          	(revision: 1.4)


****************************************
Date:	Monday July 6, 1998 @ 14:17
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv445/src

Modified Files:
	Controller.C Controller.h WorkDistrib.C 
Log Message:
Changed path info in Makearch.T3E, changed patch partition equation,
and added timing prints to Controller



===================================================================
File: no file Controller.C		Status: Needs Checkout

   Working revision:	1.1036	Mon Jul  6 19:16:59 1998
   Repository revision:	1.1036	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Controller.h		Status: Needs Checkout

   Working revision:	1.1010	Mon Jul  6 19:17:01 1998
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file WorkDistrib.C		Status: Needs Checkout

   Working revision:	1.1054	Mon Jul  6 19:17:01 1998
   Repository revision:	1.1054	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 8, 1998 @ 15:17
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv22449

Modified Files:
	Controller.C 
Log Message:
Initialized timers


===================================================================
File: no file Controller.C		Status: Needs Checkout

   Working revision:	1.1037	Wed Jul  8 20:17:21 1998
   Repository revision:	1.1037	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 8, 1998 @ 17:23
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h Molecule.C Molecule.h 
Log Message:
Eliminated exclusion checking for atoms within hydrogen group (safely).


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1037	Wed Jul  8 22:23:04 1998
   Repository revision:	1.1037	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1027	Wed Jul  8 22:23:05 1998
   Repository revision:	1.1027	/Projects/r1/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1020	Wed Jul  8 22:23:06 1998
   Repository revision:	1.1020	/Projects/r1/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 15, 1998 @ 19:49
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeHomeTuples.h Molecule.C Molecule.h 
Log Message:
Removed unnecessary tuple uniqueness code, changed tuplesByAtom
lists to only include tuple on list for first atom rather than all.


===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1014	Thu Jul 16 00:18:53 1998
   Repository revision:	1.1014	/Projects/r1/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1028	Thu Jul 16 00:49:21 1998
   Repository revision:	1.1028	/Projects/r1/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1021	Thu Jul 16 00:49:22 1998
   Repository revision:	1.1021	/Projects/r1/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 16, 1998 @ 13:52
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	PatchMap.C PatchMap.h PatchMap.inl 
Log Message:
Localized common downstream patch optimization.


===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1019	Thu Jul 16 18:52:12 1998
   Repository revision:	1.1019	/Projects/r1/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1011	Thu Jul 16 18:52:13 1998
   Repository revision:	1.1011	/Projects/r1/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.inl     	Status: Up-to-date

   Working revision:	1.2	Thu Jul 16 18:52:14 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/PatchMap.inl,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Friday July 17, 1998 @ 13:50
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Eliminated completely fixed tuples from lookup tables.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1029	Fri Jul 17 18:50:22 1998
   Repository revision:	1.1029	/Projects/r1/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday July 17, 1998 @ 16:00
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory venezia:/.automount/kyoto/export/raid/projects/r1/sergei/namd2/src

Modified Files:
	SMD.C 
Log Message:
fixed timeStamp assignment


===================================================================
File: SMD.C            	Status: Up-to-date

   Working revision:	1.7	Wed May 13 16:33:22 1998
   Repository revision:	1.7	/Projects/l3/cvsroot/namd2/src/SMD.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 28, 1998 @ 13:06
Author:	brunner

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/namd2/Programmers/brunner/namd2

Added Files:
	Todo.txt 
Log Message:
Todo file, to be updated


===================================================================
File: Todo.txt         	Status: Up-to-date

   Working revision:	1.1	Tue Jul 28 18:05:33 1998
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/Todo.txt,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 28, 1998 @ 16:15
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Home/p1/brunner/NAMD/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
AssignPatchesRoundRobin was being called all the time. This results in
too much communication for small numbers of processors.



===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1055	Tue Jul 28 21:15:11 1998
   Repository revision:	1.1055	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 30, 1998 @ 17:19
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Fixed "load-balancer bug".  Turned out to be array bounds problem.  Only
occurs with ComputeHomeSelf, and then much more likely with a Proxy.  Since
this only happens after load balancing, the crash seemed to be caused by
the load balancer.  Mea cupla.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1038	Thu Jul 30 22:18:56 1998
   Repository revision:	1.1038	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday August 2, 1998 @ 16:26
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Controller.C Controller.h Sequencer.C Sequencer.h 
Log Message:
Altered velocity rescaling to use averaged temperature.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1038	Sun Aug  2 21:26:39 1998
   Repository revision:	1.1038	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1011	Sun Aug  2 21:26:39 1998
   Repository revision:	1.1011	/Projects/r1/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1044	Sun Aug  2 21:26:40 1998
   Repository revision:	1.1044	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1017	Sun Aug  2 21:26:41 1998
   Repository revision:	1.1017	/Projects/r1/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 3, 1998 @ 17:09
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Home/p1/brunner/NAMD/namd2/src

Modified Files:
	ComputeAngles.C ComputeDihedrals.C ComputeImpropers.C 
Log Message:
Cleared errno before trig functions


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1009	Mon Aug  3 22:09:31 1998
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1010	Mon Aug  3 22:09:32 1998
   Repository revision:	1.1010	/Projects/l3/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1009	Mon Aug  3 22:09:33 1998
   Repository revision:	1.1009	/Projects/l3/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 3, 1998 @ 23:07
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Controller.C Controller.h SimParameters.C SimParameters.h 
Log Message:
Added extended system file support and fixed lack of endi in SimParameters.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1040	Tue Aug  4 04:07:21 1998
   Repository revision:	1.1040	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1013	Tue Aug  4 04:07:21 1998
   Repository revision:	1.1013	/Projects/r1/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1041	Tue Aug  4 04:07:22 1998
   Repository revision:	1.1041	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1022	Tue Aug  4 04:07:23 1998
   Repository revision:	1.1022	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 4, 1998 @ 10:56
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeMap.C WorkDistrib.C 
Log Message:
Fixed bug where no bond/angle/dihedral/etc energies computed.
Turns out we were exceeding the preallocated number of compute ID's
because patches were huge with many ComputeNonbondedSelf's.
The only error was to return -1, which was ignored.  Now it dies.


===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1018	Tue Aug  4 15:56:51 1998
   Repository revision:	1.1018	/Projects/r1/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1013)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1056	Tue Aug  4 15:56:52 1998
   Repository revision:	1.1056	/Projects/r1/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 11, 1998 @ 11:09
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/arch

Added Files:
	Makearch.KCC-i486 
Log Message:
Specialized opts for KCC under Linux on i486.


===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.1	Tue Aug 11 16:05:44 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday August 11, 1998 @ 17:29
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Home/p1/brunner/NAMD/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Added not-enough-patches error.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1058	Tue Aug 11 22:29:03 1998
   Repository revision:	1.1058	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 11, 1998 @ 17:44
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Fixed numPatches < numNodes error, added "Tiny Elvis" for Rob.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1059	Tue Aug 11 22:44:13 1998
   Repository revision:	1.1059	/Projects/r1/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 14, 1998 @ 13:09
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Rebalancer.C 
Log Message:
Fixed formatting of output.


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.17	Fri Aug 14 05:12:35 1998
   Repository revision:	1.17	/Projects/r1/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)


****************************************
Date:	Saturday August 15, 1998 @ 14:26
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory venezia:/.automount/kyoto/export/raid/projects/r1/sergei/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Fixed a bug in cylidrical boundary conditions, which 
was always setting the cylinder center to 0 0 0.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1042	Sat Aug 15 19:25:59 1998
   Repository revision:	1.1042	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 17, 1998 @ 16:04
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	WorkDistrib.C NamdOneTools.C 
Log Message:
Added checks for short binary input files.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1060	Mon Aug 17 21:04:31 1998
   Repository revision:	1.1060	/Projects/r1/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.13	Mon Aug 17 21:04:33 1998
   Repository revision:	1.13	/Projects/r1/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)


****************************************
Date:	Monday August 17, 1998 @ 18:29
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	PatchMap.inl 
Log Message:
Fixed MODULO macro needed for negative arguments.  I can't do math.


===================================================================
File: PatchMap.inl     	Status: Up-to-date

   Working revision:	1.3	Mon Aug 17 23:29:53 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/PatchMap.inl,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Monday August 17, 1998 @ 18:34
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	SimParameters.C SimParameters.h CollectionMgr.C 
Log Message:
Added options for Langevin piston and wrapWater.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1043	Mon Aug 17 23:34:28 1998
   Repository revision:	1.1043	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1023	Mon Aug 17 23:34:30 1998
   Repository revision:	1.1023	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1011	Mon Aug 17 23:34:30 1998
   Repository revision:	1.1011	/Projects/r1/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 17, 1998 @ 19:07
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Rebalancer.C AlgSeven.C RefineOnly.C 
Log Message:
Turned off output that was causing crashes.  Something having to do with
the use of field width specifiers, I think.


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.18	Fri Aug 14 21:09:37 1998
   Repository revision:	1.18	/Projects/r1/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.12	Fri Aug 14 20:45:15 1998
   Repository revision:	1.12	/Projects/r1/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: RefineOnly.C     	Status: Up-to-date

   Working revision:	1.6	Fri Aug 14 20:46:13 1998
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/src/RefineOnly.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)


****************************************
Date:	Tuesday August 18, 1998 @ 18:27
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Controller.C Controller.h Sequencer.C Sequencer.h 
Log Message:
First implementation of constant pressure.
Isotropic only, incompatible with multiple timestepping or SHAKE.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1041	Tue Aug 18 23:27:43 1998
   Repository revision:	1.1041	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1014	Tue Aug 18 23:27:44 1998
   Repository revision:	1.1014	/Projects/r1/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1047	Tue Aug 18 23:27:44 1998
   Repository revision:	1.1047	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1019	Tue Aug 18 23:27:45 1998
   Repository revision:	1.1019	/Projects/r1/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday August 20, 1998 @ 20:15
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Lattice.h 
Log Message:
Eliminated warnings.


===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1009	Fri Aug 21 01:15:04 1998
   Repository revision:	1.1009	/Projects/r1/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday August 20, 1998 @ 20:15
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Added Files:
	flipbinpdb.c flipdcd.c 
Log Message:
Incorporated byte-order flipping utilities.


===================================================================
File: flipbinpdb.c     	Status: Up-to-date

   Working revision:	1.1	Fri Aug 21 00:07:19 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/flipbinpdb.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: flipdcd.c        	Status: Up-to-date

   Working revision:	1.1	Fri Aug 21 00:07:26 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/flipdcd.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday August 20, 1998 @ 20:17
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2

Modified Files:
	Makefile config 
Log Message:
Cleaned up building process.  Now automatically creates cifiles.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1067	Fri Aug 21 01:07:38 1998
   Repository revision:	1.1067	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.4	Thu Aug 20 23:40:16 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/config,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Thursday August 20, 1998 @ 20:50
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2

Modified Files:
	config 
Added Files:
	Make.charm 
Log Message:
Added Make.charm to specify common charm directory.


===================================================================
File: Make.charm       	Status: Up-to-date

   Working revision:	1.1	Fri Aug 21 01:31:12 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/Make.charm,v

   Existing Tags:
	No Tags Exist

===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.5	Fri Aug 21 01:33:22 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/config,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Thursday August 20, 1998 @ 20:50
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/arch

Modified Files:
	Makearch.HPUX10 Makearch.HPUX9 Makearch.KCC Makearch.KCC-i486 
	Makearch.Origin2000 Makearch.SP3 Makearch.Solaris Makearch.T3E 
	Makearch.exemplar Makearch.g++ Makearch.template 
Log Message:
Added Make.charm to specify common charm directory.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.11	Fri Aug 21 01:37:41 1998
   Repository revision:	1.11	/Projects/r1/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)

===================================================================
File: Makearch.HPUX9   	Status: Up-to-date

   Working revision:	1.6	Fri Aug 21 01:38:52 1998
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/arch/Makearch.HPUX9,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.KCC     	Status: Up-to-date

   Working revision:	1.5	Fri Aug 21 01:39:46 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.2	Fri Aug 21 01:40:17 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.10	Fri Aug 21 01:41:22 1998
   Repository revision:	1.10	/Projects/r1/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.SP3     	Status: Up-to-date

   Working revision:	1.5	Fri Aug 21 01:42:15 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/arch/Makearch.SP3,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.7	Fri Aug 21 01:35:46 1998
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.9	Fri Aug 21 01:43:24 1998
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	release-alpha-1          	(revision: 1.4)

===================================================================
File: Makearch.exemplar	Status: Up-to-date

   Working revision:	1.2	Fri Aug 21 01:43:40 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/arch/Makearch.exemplar,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.g++     	Status: Up-to-date

   Working revision:	1.8	Fri Aug 21 01:43:58 1998
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/arch/Makearch.g++,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.template	Status: Up-to-date

   Working revision:	1.5	Fri Aug 21 01:45:04 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/arch/Makearch.template,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Thursday August 20, 1998 @ 21:09
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/arch

Modified Files:
	Makearch.HPUX10 Makearch.HPUX9 Makearch.KCC Makearch.KCC-i486 
	Makearch.Origin2000 Makearch.SP3 Makearch.Solaris Makearch.T3E 
	Makearch.exemplar Makearch.g++ Makearch.template 
Log Message:
Moved "include Make.charm" out of Makearch and into sub-Makefiles.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.12	Fri Aug 21 02:03:22 1998
   Repository revision:	1.12	/Projects/r1/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)

===================================================================
File: Makearch.HPUX9   	Status: Up-to-date

   Working revision:	1.7	Fri Aug 21 02:03:48 1998
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/arch/Makearch.HPUX9,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.KCC     	Status: Up-to-date

   Working revision:	1.6	Fri Aug 21 02:04:01 1998
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.3	Fri Aug 21 02:04:14 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.11	Fri Aug 21 02:04:39 1998
   Repository revision:	1.11	/Projects/r1/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.SP3     	Status: Up-to-date

   Working revision:	1.6	Fri Aug 21 02:04:50 1998
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/arch/Makearch.SP3,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.8	Fri Aug 21 01:59:36 1998
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.10	Fri Aug 21 02:05:34 1998
   Repository revision:	1.10	/Projects/r1/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	release-alpha-1          	(revision: 1.4)

===================================================================
File: Makearch.exemplar	Status: Up-to-date

   Working revision:	1.3	Fri Aug 21 02:05:41 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/arch/Makearch.exemplar,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.g++     	Status: Up-to-date

   Working revision:	1.9	Fri Aug 21 02:05:48 1998
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/arch/Makearch.g++,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.template	Status: Up-to-date

   Working revision:	1.6	Fri Aug 21 02:05:54 1998
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/arch/Makearch.template,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Thursday August 20, 1998 @ 21:09
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpme2
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/dpme2

Modified Files:
	Makefile 
Log Message:
Moved "include Make.charm" out of Makearch and into sub-Makefiles.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.11	Fri Aug 21 02:01:02 1998
   Repository revision:	1.11	/Projects/r1/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.5)


****************************************
Date:	Thursday August 20, 1998 @ 21:09
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpmta-2.6
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/dpmta-2.6

Modified Files:
	Makefile 
Log Message:
Moved "include Make.charm" out of Makearch and into sub-Makefiles.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.4	Fri Aug 21 02:09:57 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/dpmta-2.6/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Thursday August 20, 1998 @ 21:10
Author:	jim

Update of /Projects/r1/cvsroot/namd2/pvm3
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/pvm3

Modified Files:
	Makefile 
Log Message:
Moved "include Make.charm" out of Makearch and into sub-Makefiles.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.13	Fri Aug 21 02:02:00 1998
   Repository revision:	1.13	/Projects/r1/cvsroot/namd2/pvm3/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.11)
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday August 20, 1998 @ 21:13
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2

Modified Files:
	Makefile 
Log Message:
Moved "include Make.charm" out of Makearch and into Makefile.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1068	Fri Aug 21 01:59:53 1998
   Repository revision:	1.1068	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday August 20, 1998 @ 21:26
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/ug

Modified Files:
	ug.tex ug_add.tex ug_basic.tex 
Log Message:
Added more docs, cleaned up a bit, switched figure system.


===================================================================
File: ug.tex           	Status: Up-to-date

   Working revision:	1.2	Fri Aug 21 02:26:22 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/ug/ug.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.5	Fri Aug 21 02:21:28 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.5	Thu Aug 20 01:50:10 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday August 20, 1998 @ 21:29
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2

Modified Files:
	Make.depends 
Log Message:
New dependencies.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.21	Tue Aug 18 16:26:19 1998
   Repository revision:	1.21	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Friday August 21, 1998 @ 11:40
Author:	johns

Update of /Projects/r1/cvsroot/namd2/arch
In directory asuncion:/tmp/johns/namd2/arch

Modified Files:
	Makearch.Solaris 
Log Message:
Updated Solaris compilation flags, tuned for UltraSPARC


===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.9	Fri Aug 21 16:38:53 1998
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Friday August 21, 1998 @ 11:43
Author:	johns

Update of /Projects/r1/cvsroot/namd2/arch
In directory titan:/tmp/johns/namd2/arch

Modified Files:
	Makearch.Origin2000 
Log Message:
Added -mips4 flag to Origin2000 build flags. 


===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.12	Fri Aug 21 16:01:46 1998
   Repository revision:	1.12	/Projects/r1/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Friday August 21, 1998 @ 17:49
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/arch

Modified Files:
	Makearch.KCC-i486 
Log Message:
Added latest optimization options.


===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.4	Fri Aug 21 21:57:45 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday August 23, 1998 @ 15:58
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/arch

Modified Files:
	Makearch.HPUX10 Makearch.HPUX9 Makearch.KCC Makearch.KCC-i486 
	Makearch.Origin2000 Makearch.exemplar Makearch.g++ 
Log Message:
Eliminated unused DFLAGS defs.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.13	Sun Aug 23 20:25:42 1998
   Repository revision:	1.13	/Projects/r1/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)

===================================================================
File: Makearch.HPUX9   	Status: Up-to-date

   Working revision:	1.8	Sun Aug 23 20:26:35 1998
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/arch/Makearch.HPUX9,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.KCC     	Status: Up-to-date

   Working revision:	1.7	Sun Aug 23 20:27:02 1998
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.5	Sun Aug 23 20:27:15 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.13	Sun Aug 23 20:29:05 1998
   Repository revision:	1.13	/Projects/r1/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.exemplar	Status: Up-to-date

   Working revision:	1.4	Sun Aug 23 20:28:23 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/arch/Makearch.exemplar,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.g++     	Status: Up-to-date

   Working revision:	1.10	Sun Aug 23 20:28:30 1998
   Repository revision:	1.10	/Projects/r1/cvsroot/namd2/arch/Makearch.g++,v

   Existing Tags:
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Sunday August 23, 1998 @ 15:59
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpme2
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/dpme2

Modified Files:
	Makefile 
Log Message:
Fixed compile option passing.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.12	Sun Aug 23 20:33:28 1998
   Repository revision:	1.12	/Projects/r1/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.5)


****************************************
Date:	Sunday August 23, 1998 @ 15:59
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpmta-2.6/mpole
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/dpmta-2.6/mpole

Modified Files:
	Makefile 
Log Message:
Fixed compile option passing.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.4	Sun Aug 23 20:59:22 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/dpmta-2.6/mpole/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Sunday August 23, 1998 @ 15:59
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpmta-2.6/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/dpmta-2.6/src

Modified Files:
	Makefile Makefile.converse 
Log Message:
Fixed compile option passing.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.4	Sun Aug 23 20:59:28 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/dpmta-2.6/src/Makefile,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)

===================================================================
File: Makefile.converse	Status: Up-to-date

   Working revision:	1.5	Sun Aug 23 20:59:29 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/dpmta-2.6/src/Makefile.converse,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Saturday August 29, 1998 @ 16:19
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	LdbCoordinator.C 
Log Message:
Fixed bug that showed up when certain features were turned on.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.31	Sat Aug 29 21:01:20 1998
   Repository revision:	1.31	/Projects/r1/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Tuesday September 1, 1998 @ 18:10
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory titan:/tmp_mnt/Home/p1/brunner/NAMD/namd2/src

Modified Files:
	WorkDistrib.C NamdOneTools.C 
Log Message:
Fixed PDB velocity input conversion problem: PDBVELINVFACTOR



===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1061	Tue Sep  1 23:10:34 1998
   Repository revision:	1.1061	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.14	Tue Sep  1 23:10:34 1998
   Repository revision:	1.14	/Projects/l3/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)


****************************************
Date:	Wednesday September 2, 1998 @ 15:38
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	PDB.C Output.C common.C common.h dcdlib.C 
Log Message:
Improved error checking on file output.


===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1005	Wed Sep  2 20:38:30 1998
   Repository revision:	1.1005	/Projects/r1/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.15	Wed Sep  2 20:38:31 1998
   Repository revision:	1.15	/Projects/r1/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1014	Wed Sep  2 20:38:34 1998
   Repository revision:	1.1014	/Projects/r1/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1017	Wed Sep  2 20:38:35 1998
   Repository revision:	1.1017	/Projects/r1/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.5	Wed Sep  2 20:38:37 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Friday September 4, 1998 @ 14:28
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/arch
In directory ophelia:/tmp_mnt/Home/p1/brunner/NAMD/namd2/arch

Modified Files:
	Makearch.HPUX10 
Log Message:
Added DFLAGS back in


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.14	Fri Sep  4 19:14:45 1998
   Repository revision:	1.14	/Projects/l3/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Tuesday September 8, 1998 @ 19:44
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	dcdlib.C 
Log Message:
Fixed a bug in read_dcdheader: input_integer must be declared as int32


===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.6	Wed Sep  9 00:44:17 1998
   Repository revision:	1.6	/Projects/l3/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday September 8, 1998 @ 21:58
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Fixed bug with interaction between nonbondedGroupSize vs hydrogenGroupSize
and automatic exclusion of atoms within a hydrogen group.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1039	Wed Sep  9 02:58:31 1998
   Repository revision:	1.1039	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 10, 1998 @ 14:04
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv20194/src

Modified Files:
	structures.h 
Log Message:
Made ints into int32s, to save memory.  Unfortunately, it doesn't help
much.



===================================================================
File: no file structures.h		Status: Needs Checkout

   Working revision:	1.1004	Thu Sep 10 19:04:23 1998
   Repository revision:	1.1004	/Projects/l3/cvsroot/namd2/src/structures.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 10, 1998 @ 14:07
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Home/p1/brunner/NAMD/namd2/src

Modified Files:
	common.h 
Log Message:
Changed int32 declaration


===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1018	Thu Sep 10 19:07:21 1998
   Repository revision:	1.1018	/Projects/l3/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday September 13, 1998 @ 16:06
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/ug

Modified Files:
	ug_io.tex 
Log Message:
Documented outputMomenta and outputTiming options.


===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.3	Sun Sep 13 20:29:23 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday September 13, 1998 @ 16:10
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Quick fix.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1045	Sun Sep 13 21:10:21 1998
   Repository revision:	1.1045	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 14, 1998 @ 11:11
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	CollectionMaster.C CollectionMaster.h Molecule.C Molecule.h 
	ResizeArray.h 
Log Message:
Changes to reduce node 0 memory use.  Fixed bug in ResizeArray::item().


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1014	Mon Sep 14 16:11:33 1998
   Repository revision:	1.1014	/Projects/r1/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1011	Mon Sep 14 16:11:34 1998
   Repository revision:	1.1011	/Projects/r1/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1030	Mon Sep 14 16:11:36 1998
   Repository revision:	1.1030	/Projects/r1/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1022	Mon Sep 14 16:11:39 1998
   Repository revision:	1.1022	/Projects/r1/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.3	Mon Sep 14 15:28:30 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/ResizeArray.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday September 14, 1998 @ 11:51
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Controller.C 
Log Message:
Fixed timing printout.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1043	Mon Sep 14 16:51:05 1998
   Repository revision:	1.1043	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 14, 1998 @ 15:05
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Controller.C 
Log Message:
Eliminated unnecessary timer calls.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1044	Mon Sep 14 20:05:32 1998
   Repository revision:	1.1044	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 14, 1998 @ 16:45
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	AlgSeven.C ComputeDPME.C LdbCoordinator.C 
Log Message:
Turned off DPME and load balancer verbose output.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.13	Mon Sep 14 21:37:58 1998
   Repository revision:	1.13	/Projects/r1/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.5	Mon Sep 14 21:45:25 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.32	Mon Sep 14 21:33:25 1998
   Repository revision:	1.32	/Projects/r1/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Monday September 14, 1998 @ 17:02
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Altered load balancer defaults.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1046	Mon Sep 14 22:02:41 1998
   Repository revision:	1.1046	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 14, 1998 @ 22:05
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2

Modified Files:
	Make.depends 
Log Message:
Fixed test mode.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.22	Tue Sep 15 02:50:38 1998
   Repository revision:	1.22	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Monday September 14, 1998 @ 22:06
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	TestController.C 
Log Message:
Fixed test mode.


===================================================================
File: TestController.C 	Status: Up-to-date

   Working revision:	1.4	Tue Sep 15 03:06:00 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/TestController.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday September 15, 1998 @ 0:18
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	main.C 
Log Message:
Changed web feedback address.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1010	Tue Sep 15 05:18:13 1998
   Repository revision:	1.1010	/Projects/r1/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 17, 1998 @ 16:03
Author:	brunner

Update of /Projects/l3/cvsroot/namd2
In directory ophelia:/tmp_mnt/Home/p1/brunner/NAMD/namd2

Modified Files:
	Todo.txt 
Log Message:
Check-in test


===================================================================
File: Todo.txt         	Status: Up-to-date

   Working revision:	1.2	Thu Sep 17 21:03:26 1998
   Repository revision:	1.2	/Projects/l3/cvsroot/namd2/Todo.txt,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday September 20, 1998 @ 11:35
Author:	hurwitz

Update of /Projects/r1/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Scr/europa/hurwitz/namd2/src

Modified Files:
	ComputeFreeEnergy.C FreeEnergyLambdMgr.C FreeEnergyLambdMgr.h 
	FreeEnergyLambda.C FreeEnergyLambda.h FreeEnergyRMgr.C 
	FreeEnergyRestrain.C FreeEnergyRestrain.h FreeEnergyVector.C 
Log Message:
make sure Lambda control objects start and stop on just the right step.
made output shorter and more readable (compile with _VERBOSE_PMF for old output)
: ----------------------------------------------------------------------


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.13	Sun Sep 20 16:34:55 1998
   Repository revision:	1.13	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambdMgr.C	Status: Up-to-date

   Working revision:	1.4	Sun Sep 20 16:34:56 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambdMgr.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambdMgr.h	Status: Up-to-date

   Working revision:	1.4	Sun Sep 20 16:34:57 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambdMgr.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambda.C	Status: Up-to-date

   Working revision:	1.5	Sun Sep 20 16:34:58 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambda.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyLambda.h	Status: Up-to-date

   Working revision:	1.4	Sun Sep 20 16:34:58 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambda.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyRMgr.C 	Status: Up-to-date

   Working revision:	1.3	Sun Sep 20 16:34:59 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/FreeEnergyRMgr.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyRestrain.C	Status: Up-to-date

   Working revision:	1.5	Sun Sep 20 16:35:00 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/FreeEnergyRestrain.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyRestrain.h	Status: Up-to-date

   Working revision:	1.3	Sun Sep 20 16:35:01 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/FreeEnergyRestrain.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyVector.C	Status: Up-to-date

   Working revision:	1.2	Sun Sep 20 16:35:01 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/FreeEnergyVector.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday September 21, 1998 @ 13:36
Author:	krishnan

Update of /Projects/l3/cvsroot/namd2/arch
In directory polonius:/tmp_mnt/Common/shared/kris/akeen/namd2/arch

Modified Files:
	Makearch.Origin2000 
Log Message:
Changed CHARMARCH =origin-mpi. It uses the mpi version of converse.


===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.14	Mon Sep 21 18:34:45 1998
   Repository revision:	1.14	/Projects/l3/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Wednesday September 30, 1998 @ 19:28
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory europa:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	NamdOneTools.C NamdOneTools.h 
Log Message:
added vec_rotation_matrix (adopted from Mesa code) and mat_multiply_vec


===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.15	Thu Oct  1 00:28:56 1998
   Repository revision:	1.15	/Projects/l3/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)

===================================================================
File: NamdOneTools.h   	Status: Up-to-date

   Working revision:	1.4	Thu Oct  1 00:28:57 1998
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/NamdOneTools.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)


****************************************
Date:	Wednesday September 30, 1998 @ 19:31
Author:	sergei

Update of /Projects/l3/cvsroot/namd2/src
In directory europa:/tmp_mnt/Projects/r1/sergei/namd2/src

Modified Files:
	SimParameters.C SimParameters.h ComputeRestraints.C 
	ComputeRestraints.h 
Log Message:
added rotating restraints feature;
changed the moving restraints from only moving one atom to moving all 
atoms that are restrained. One-atom pulling is available in SMD feature.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1047	Thu Oct  1 00:31:29 1998
   Repository revision:	1.1047	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1025	Thu Oct  1 00:31:30 1998
   Repository revision:	1.1025	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeRestraints.C	Status: Up-to-date

   Working revision:	1.4	Thu Oct  1 00:31:31 1998
   Repository revision:	1.4	/Projects/l3/cvsroot/namd2/src/ComputeRestraints.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeRestraints.h	Status: Up-to-date

   Working revision:	1.3	Thu Oct  1 00:31:31 1998
   Repository revision:	1.3	/Projects/l3/cvsroot/namd2/src/ComputeRestraints.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)


****************************************
Date:	Friday October 2, 1998 @ 10:17
Author:	hurwitz

Update of /Projects/r1/cvsroot/namd2/doc
In directory hamlet:/tmp_mnt/Projects/namd2/Programmers/hurwitz/namd2/doc

Added Files:
	FreeEnergy.doc FreeEnergy.tex 
Log Message:
documentation for Free Energy calculations
in latex format and MS Word 6.0 format


===================================================================
File: FreeEnergy.doc   	Status: Up-to-date

   Working revision:	1.1	Fri Oct  2 15:12:57 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/doc/FreeEnergy.doc,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergy.tex   	Status: Up-to-date

   Working revision:	1.1	Fri Oct  2 15:13:03 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/doc/FreeEnergy.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday October 8, 1998 @ 11:48
Author:	hurwitz

Update of /Projects/r1/cvsroot/namd2/test
In directory hamlet:/tmp_mnt/Scr/europa/hurwitz/namd2/test

Added Files:
	FreeEnergyMCTI.rstr FreeEnergyPMF.rstr alaninFreeEnergy 
Log Message:
files for testing free energy calculations and forcing restraints


===================================================================
File: FreeEnergyMCTI.rstr	Status: Up-to-date

   Working revision:	1.1	Wed Oct  7 17:02:20 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/test/FreeEnergyMCTI.rstr,v

   Existing Tags:
	No Tags Exist

===================================================================
File: FreeEnergyPMF.rstr	Status: Up-to-date

   Working revision:	1.1	Wed Oct  7 17:02:06 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/test/FreeEnergyPMF.rstr,v

   Existing Tags:
	No Tags Exist

===================================================================
File: alaninFreeEnergy 	Status: Up-to-date

   Working revision:	1.1	Thu Oct  8 16:43:47 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/test/alaninFreeEnergy,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday October 14, 1998 @ 15:40
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory oberon:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Removed moving constraints changes from single atom pulling.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1031	Wed Oct 14 20:40:54 1998
   Repository revision:	1.1031	/Projects/r1/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 14, 1998 @ 16:20
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory oberon:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Fixed bug from moving constraint changes.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1048	Wed Oct 14 21:20:28 1998
   Repository revision:	1.1048	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday October 16, 1998 @ 17:19
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Added endi to work around node-limit bug on clusters.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1063	Fri Oct 16 22:19:32 1998
   Repository revision:	1.1063	/Projects/r1/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday October 19, 1998 @ 15:05
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory hamlet:/tmp/cvs-serv14244

Added Files:
	Makearch.g++-i486 
Log Message:
Compiles optimized with egcs under RedHat 5.x.


===================================================================
File: Makearch.g++-i486	Status: Up-to-date

   Working revision:	1.1	Mon Oct 19 20:05:03 1998
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/arch/Makearch.g++-i486,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Saturday October 24, 1998 @ 14:58
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv22927

Modified Files:
	AlgSeven.C BroadcastMgr.C BroadcastMgr.h CollectionMaster.C 
	CollectionMgr.C Compute.C ComputeDPMEMsgs.C ComputeDPMTA.C 
	ComputeFullDirect.C ComputeGlobalMaster.h ComputeGlobalMsgs.C 
	ComputeHomeTuples.h ComputeMap.C ComputeMgr.C 
	ComputeNonbondedBase.h ComputeTcl.C ConfigList.C Controller.C 
	Controller.h FreeEnergyParse.C FreeEnergyRestrain.h 
	HomePatch.C Inform.C IntTree.C LJTable.C LdbCoordinator.C 
	MStream.C MStream.h MigrateAtomsMsg.C Molecule.C Namd.C 
	NamdOneTools.C NamdState.C Node.C Output.C OwnerBox.h PDB.C 
	PDBData.C Parameters.C ParseOptions.C Patch.C PatchMgr.C 
	PositionOwnerBox.h ProxyPatch.C Rebalancer.C RecBisection.C 
	ReductionMgr.C ResizeArray.h SMD.C Sequencer.C Sequencer.h 
	SimParameters.C TestController.C TestSequencer.C 
	UniqueSetRaw.h WorkDistrib.C WorkDistrib.h common.C dcdlib.C 
	heap.C main.C strlib.C strlib.h 
Log Message:
Eliminated warnings generated by g++ -Wall.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.14	Sat Oct 24 19:57:03 1998
   Repository revision:	1.14	/Projects/r1/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: no file BroadcastMgr.C		Status: Needs Checkout

   Working revision:	1.9	Sat Oct 24 19:57:17 1998
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/src/BroadcastMgr.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.2)

===================================================================
File: no file BroadcastMgr.h		Status: Needs Checkout

   Working revision:	1.9	Sat Oct 24 19:57:18 1998
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/src/BroadcastMgr.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)

===================================================================
File: no file CollectionMaster.C		Status: Needs Checkout

   Working revision:	1.1015	Sat Oct 24 19:57:19 1998
   Repository revision:	1.1015	/Projects/r1/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file CollectionMgr.C		Status: Needs Checkout

   Working revision:	1.1012	Sat Oct 24 19:57:19 1998
   Repository revision:	1.1012	/Projects/r1/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Compute.C		Status: Needs Checkout

   Working revision:	1.1018	Sat Oct 24 19:57:20 1998
   Repository revision:	1.1018	/Projects/r1/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeDPMEMsgs.C		Status: Needs Checkout

   Working revision:	1.2	Sat Oct 24 19:57:21 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/ComputeDPMEMsgs.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: no file ComputeDPMTA.C		Status: Needs Checkout

   Working revision:	1.1051	Sat Oct 24 19:57:22 1998
   Repository revision:	1.1051	/Projects/r1/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: no file ComputeFullDirect.C		Status: Needs Checkout

   Working revision:	1.1016	Sat Oct 24 19:57:23 1998
   Repository revision:	1.1016	/Projects/r1/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1012)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: no file ComputeGlobalMaster.h		Status: Needs Checkout

   Working revision:	1.3	Sat Oct 24 19:57:23 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/ComputeGlobalMaster.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: no file ComputeGlobalMsgs.C		Status: Needs Checkout

   Working revision:	1.3	Sat Oct 24 19:57:24 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/ComputeGlobalMsgs.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1015	Sat Oct 24 19:57:04 1998
   Repository revision:	1.1015	/Projects/r1/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeMap.C		Status: Needs Checkout

   Working revision:	1.1019	Sat Oct 24 19:57:26 1998
   Repository revision:	1.1019	/Projects/r1/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1013)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeMgr.C		Status: Needs Checkout

   Working revision:	1.1025	Sat Oct 24 19:57:26 1998
   Repository revision:	1.1025	/Projects/r1/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeNonbondedBase.h		Status: Needs Checkout

   Working revision:	1.1040	Sat Oct 24 19:57:27 1998
   Repository revision:	1.1040	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeTcl.C		Status: Needs Checkout

   Working revision:	1.8	Sat Oct 24 19:57:28 1998
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: no file ConfigList.C		Status: Needs Checkout

   Working revision:	1.1008	Sat Oct 24 19:57:29 1998
   Repository revision:	1.1008	/Projects/r1/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Controller.C		Status: Needs Checkout

   Working revision:	1.1045	Sat Oct 24 19:57:30 1998
   Repository revision:	1.1045	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Controller.h		Status: Needs Checkout

   Working revision:	1.1016	Sat Oct 24 19:57:31 1998
   Repository revision:	1.1016	/Projects/r1/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file FreeEnergyParse.C		Status: Needs Checkout

   Working revision:	1.3	Sat Oct 24 19:57:32 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/FreeEnergyParse.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: no file FreeEnergyRestrain.h		Status: Needs Checkout

   Working revision:	1.4	Sat Oct 24 19:57:32 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/FreeEnergyRestrain.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: no file HomePatch.C		Status: Needs Checkout

   Working revision:	1.1048	Sat Oct 24 19:57:33 1998
   Repository revision:	1.1048	/Projects/r1/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Inform.C		Status: Needs Checkout

   Working revision:	1.1003	Sat Oct 24 19:57:34 1998
   Repository revision:	1.1003	/Projects/r1/cvsroot/namd2/src/Inform.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file IntTree.C		Status: Needs Checkout

   Working revision:	1.1002	Sat Oct 24 19:57:35 1998
   Repository revision:	1.1002	/Projects/r1/cvsroot/namd2/src/IntTree.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file LJTable.C		Status: Needs Checkout

   Working revision:	1.1007	Sat Oct 24 19:57:36 1998
   Repository revision:	1.1007	/Projects/r1/cvsroot/namd2/src/LJTable.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.33	Sat Oct 24 19:57:04 1998
   Repository revision:	1.33	/Projects/r1/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: MStream.C        	Status: Up-to-date

   Working revision:	1.3	Sat Oct 24 19:57:04 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/MStream.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: MStream.h        	Status: Up-to-date

   Working revision:	1.4	Sat Oct 24 19:57:04 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/MStream.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.1)

===================================================================
File: no file MigrateAtomsMsg.C		Status: Needs Checkout

   Working revision:	1.8	Sat Oct 24 19:57:39 1998
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/src/MigrateAtomsMsg.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.7)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: no file Molecule.C		Status: Needs Checkout

   Working revision:	1.1032	Sat Oct 24 19:57:40 1998
   Repository revision:	1.1032	/Projects/r1/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Namd.C		Status: Needs Checkout

   Working revision:	1.1010	Sat Oct 24 19:57:41 1998
   Repository revision:	1.1010	/Projects/r1/cvsroot/namd2/src/Namd.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file NamdOneTools.C		Status: Needs Checkout

   Working revision:	1.16	Sat Oct 24 19:57:42 1998
   Repository revision:	1.16	/Projects/r1/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)

===================================================================
File: no file NamdState.C		Status: Needs Checkout

   Working revision:	1.1016	Sat Oct 24 19:57:43 1998
   Repository revision:	1.1016	/Projects/r1/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Node.C		Status: Needs Checkout

   Working revision:	1.1029	Sat Oct 24 19:57:44 1998
   Repository revision:	1.1029	/Projects/r1/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Output.C		Status: Needs Checkout

   Working revision:	1.16	Sat Oct 24 19:57:45 1998
   Repository revision:	1.16	/Projects/r1/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: OwnerBox.h       	Status: Up-to-date

   Working revision:	1.3	Sat Oct 24 19:57:05 1998
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/OwnerBox.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: no file PDB.C		Status: Needs Checkout

   Working revision:	1.1006	Sat Oct 24 19:57:47 1998
   Repository revision:	1.1006	/Projects/r1/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file PDBData.C		Status: Needs Checkout

   Working revision:	1.1004	Sat Oct 24 19:57:47 1998
   Repository revision:	1.1004	/Projects/r1/cvsroot/namd2/src/PDBData.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Parameters.C		Status: Needs Checkout

   Working revision:	1.1007	Sat Oct 24 19:57:49 1998
   Repository revision:	1.1007	/Projects/r1/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ParseOptions.C		Status: Needs Checkout

   Working revision:	1.1008	Sat Oct 24 19:57:50 1998
   Repository revision:	1.1008	/Projects/r1/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Patch.C		Status: Needs Checkout

   Working revision:	1.1025	Sat Oct 24 19:57:51 1998
   Repository revision:	1.1025	/Projects/r1/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file PatchMgr.C		Status: Needs Checkout

   Working revision:	1.1016	Sat Oct 24 19:57:52 1998
   Repository revision:	1.1016	/Projects/r1/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PositionOwnerBox.h	Status: Up-to-date

   Working revision:	1.1007	Sat Oct 24 19:57:05 1998
   Repository revision:	1.1007	/Projects/r1/cvsroot/namd2/src/PositionOwnerBox.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: no file ProxyPatch.C		Status: Needs Checkout

   Working revision:	1.1019	Sat Oct 24 19:57:54 1998
   Repository revision:	1.1019	/Projects/r1/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.19	Sat Oct 24 19:57:05 1998
   Repository revision:	1.19	/Projects/r1/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: no file RecBisection.C		Status: Needs Checkout

   Working revision:	1.4	Sat Oct 24 19:57:55 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/RecBisection.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)

===================================================================
File: no file ReductionMgr.C		Status: Needs Checkout

   Working revision:	1.1027	Sat Oct 24 19:57:56 1998
   Repository revision:	1.1027	/Projects/r1/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1026)
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.4	Sat Oct 24 19:57:06 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/ResizeArray.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: SMD.C            	Status: Up-to-date

   Working revision:	1.8	Sat Oct 24 19:57:06 1998
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/src/SMD.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: no file Sequencer.C		Status: Needs Checkout

   Working revision:	1.1048	Sat Oct 24 19:57:59 1998
   Repository revision:	1.1048	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file Sequencer.h		Status: Needs Checkout

   Working revision:	1.1020	Sat Oct 24 19:58:00 1998
   Repository revision:	1.1020	/Projects/r1/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file SimParameters.C		Status: Needs Checkout

   Working revision:	1.1049	Sat Oct 24 19:58:01 1998
   Repository revision:	1.1049	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file TestController.C		Status: Needs Checkout

   Working revision:	1.5	Sat Oct 24 19:58:02 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/TestController.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: no file TestSequencer.C		Status: Needs Checkout

   Working revision:	1.5	Sat Oct 24 19:58:03 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/TestSequencer.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: UniqueSetRaw.h   	Status: Up-to-date

   Working revision:	1.2	Sat Oct 24 19:57:06 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/UniqueSetRaw.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: no file WorkDistrib.C		Status: Needs Checkout

   Working revision:	1.1064	Sat Oct 24 19:58:04 1998
   Repository revision:	1.1064	/Projects/r1/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file WorkDistrib.h		Status: Needs Checkout

   Working revision:	1.1015	Sat Oct 24 19:58:05 1998
   Repository revision:	1.1015	/Projects/r1/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file common.C		Status: Needs Checkout

   Working revision:	1.1015	Sat Oct 24 19:58:06 1998
   Repository revision:	1.1015	/Projects/r1/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file dcdlib.C		Status: Needs Checkout

   Working revision:	1.7	Sat Oct 24 19:58:07 1998
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)

===================================================================
File: heap.C           	Status: Up-to-date

   Working revision:	1.4	Sat Oct 24 19:57:07 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/heap.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: no file main.C		Status: Needs Checkout

   Working revision:	1.1011	Sat Oct 24 19:58:09 1998
   Repository revision:	1.1011	/Projects/r1/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file strlib.C		Status: Needs Checkout

   Working revision:	1.1003	Sat Oct 24 19:58:10 1998
   Repository revision:	1.1003	/Projects/r1/cvsroot/namd2/src/strlib.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file strlib.h		Status: Needs Checkout

   Working revision:	1.1003	Sat Oct 24 19:58:10 1998
   Repository revision:	1.1003	/Projects/r1/cvsroot/namd2/src/strlib.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday October 24, 1998 @ 15:04
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpme2
In directory hamlet:/tmp/cvs-serv23353

Modified Files:
	dpme2_utilityW.c 
Log Message:
Eliminated warnings generated by g++ -Wall


===================================================================
File: no file dpme2_utilityW.c		Status: Needs Checkout

   Working revision:	1.4	Sat Oct 24 20:04:11 1998
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/dpme2/dpme2_utilityW.c,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)


****************************************
Date:	Saturday October 24, 1998 @ 15:05
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory hamlet:/tmp/cvs-serv23420

Modified Files:
	Makearch.g++-i486 
Log Message:
Added TCL and warnings.


===================================================================
File: Makearch.g++-i486	Status: Up-to-date

   Working revision:	1.2	Sat Oct 24 20:05:35 1998
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/arch/Makearch.g++-i486,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Saturday October 24, 1998 @ 23:40
Author:	krishnan

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Common/shared/kris/akeen/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Added the binaryOutput parameter to specify the format of the output file 
that is generated (PDB or binary).



===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1050	Sun Oct 25 04:40:10 1998
   Repository revision:	1.1050	/Projects/l3/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday October 24, 1998 @ 23:42
Author:	krishnan

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Common/shared/kris/akeen/namd2/src

Modified Files:
	Output.C 
Log Message:
The format of the output files now depend on the binaryOutput parameter
instead of binaryRestart


===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.17	Sun Oct 25 04:42:15 1998
   Repository revision:	1.17	/Projects/l3/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)


****************************************
Date:	Monday October 26, 1998 @ 11:14
Author:	krishnan

Update of /Projects/l3/cvsroot/namd2/src
In directory polonius:/tmp_mnt/Common/shared/kris/akeen/namd2/src

Modified Files:
	SimParameters.h 
Log Message:
Added binaryOutput


===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1026	Mon Oct 26 17:14:51 1998
   Repository revision:	1.1026	/Projects/l3/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday October 27, 1998 @ 10:27
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/.automount/kyoto/export/raid/projects/r1/namd.2.0/Programmers/jim/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Fixed busted velocity rescaling (was doing nothing).


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1049	Tue Oct 27 16:27:29 1998
   Repository revision:	1.1049	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday October 29, 1998 @ 11:58
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Fixed bug - moved declaration.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1041	Thu Oct 29 17:58:17 1998
   Repository revision:	1.1041	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday November 1, 1998 @ 17:25
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeAngles.h ComputeBonds.h ComputeDihedrals.h 
	ComputeHomeTuples.h ComputeImpropers.h ComputeNonbondedExcl.h 
	Controller.C ReductionMgr.h Sequencer.C 
Log Message:
Added basic correctness checking: atom counts, etc.


===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1007	Sun Nov  1 23:25:44 1998
   Repository revision:	1.1007	/Projects/r1/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1005	Sun Nov  1 23:25:44 1998
   Repository revision:	1.1005	/Projects/r1/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1004	Sun Nov  1 23:25:45 1998
   Repository revision:	1.1004	/Projects/r1/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1016	Sun Nov  1 23:00:20 1998
   Repository revision:	1.1016	/Projects/r1/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1004	Sun Nov  1 23:25:46 1998
   Repository revision:	1.1004	/Projects/r1/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.1006	Sun Nov  1 23:25:46 1998
   Repository revision:	1.1006	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedExcl.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1046	Sun Nov  1 23:25:47 1998
   Repository revision:	1.1046	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1012	Sun Nov  1 23:25:49 1998
   Repository revision:	1.1012	/Projects/r1/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1050	Sun Nov  1 23:25:49 1998
   Repository revision:	1.1050	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday November 18, 1998 @ 15:17
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory oberon:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedUtil.C Controller.C Controller.h 
Log Message:
Added checksum to make sure compute objects don't go missing.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1020	Wed Nov 18 21:17:39 1998
   Repository revision:	1.1020	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1047	Wed Nov 18 21:17:41 1998
   Repository revision:	1.1047	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1017	Wed Nov 18 21:17:42 1998
   Repository revision:	1.1017	/Projects/r1/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday November 24, 1998 @ 18:11
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	LdbCoordinator.C LdbCoordinator.ci LdbCoordinator.h 
Log Message:
Fixed load balance barrier hanging bug.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.34	Tue Nov 24 19:48:54 1998
   Repository revision:	1.34	/Projects/r1/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: LdbCoordinator.ci	Status: Up-to-date

   Working revision:	1.5	Wed Nov 25 00:11:30 1998
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/LdbCoordinator.ci,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.2)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.23	Wed Nov 25 00:11:30 1998
   Repository revision:	1.23	/Projects/r1/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)


****************************************
Date:	Sunday November 29, 1998 @ 15:49
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Node.C 
Log Message:
Added startup diagnostics.


===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1030	Sun Nov 29 21:49:54 1998
   Repository revision:	1.1030	/Projects/r1/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday November 29, 1998 @ 16:01
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C Controller.h Sequencer.C SimParameters.C 
	SimParameters.h 
Log Message:
Added group-based pressure control to work with rigidBonds.
New option useGroupPressure, turned on automatically if needed.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1048	Sun Nov 29 22:00:58 1998
   Repository revision:	1.1048	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1018	Sun Nov 29 22:00:58 1998
   Repository revision:	1.1018	/Projects/r1/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1051	Sun Nov 29 22:00:58 1998
   Repository revision:	1.1051	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1051	Sun Nov 29 22:00:59 1998
   Repository revision:	1.1051	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1027	Sun Nov 29 22:01:00 1998
   Repository revision:	1.1027	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday November 29, 1998 @ 21:19
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C 
Log Message:
Fixed startup bug in algorithm.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1049	Mon Nov 30 03:19:14 1998
   Repository revision:	1.1049	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday November 29, 1998 @ 22:05
Author:	krishnan

Update of /Projects/l3/cvsroot/namd2/src
In directory oberon:/Common/shared/kris/akeen/namd2/src

Modified Files:
	LdbCoordinator.C 
Log Message:
Initialize calls checkAndGotoBarrier, if the node does not have any patch or compute
assigned to it.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.35	Sat Nov 28 23:09:41 1998
   Repository revision:	1.35	/Projects/l3/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Sunday November 29, 1998 @ 22:10
Author:	krishnan

Update of /Projects/l3/cvsroot/namd2/src
In directory oberon:/Common/shared/kris/akeen/namd2/src

Modified Files:
	Controller.C 
Log Message:
Added code to trigger the reduction manager on every timestep, if numNodes > nPatches


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1050	Mon Nov 30 04:10:25 1998
   Repository revision:	1.1050	/Projects/l3/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday November 29, 1998 @ 22:11
Author:	krishnan

Update of /Projects/l3/cvsroot/namd2/src
In directory oberon:/Common/shared/kris/akeen/namd2/src

Modified Files:
	Node.C 
Log Message:
Fixed the numNode > nPatches bug.


===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1031	Mon Nov 30 04:11:41 1998
   Repository revision:	1.1031	/Projects/l3/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday November 29, 1998 @ 22:12
Author:	krishnan

Update of /Projects/l3/cvsroot/namd2/src
In directory oberon:/Common/shared/kris/akeen/namd2/src

Modified Files:
	CollectionMaster.h 
Log Message:
Fixed the numNodes > nPatches bug.


===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1012	Mon Nov 30 04:12:34 1998
   Repository revision:	1.1012	/Projects/l3/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday November 29, 1998 @ 22:13
Author:	krishnan

Update of /Projects/l3/cvsroot/namd2/src
In directory oberon:/Common/shared/kris/akeen/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Fixed the numNodes > nPatches bug. It does not create computeHomePatches if there are no patches
on that particular node.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1065	Mon Nov 30 04:13:48 1998
   Repository revision:	1.1065	/Projects/l3/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday November 29, 1998 @ 22:15
Author:	krishnan

Update of /Projects/l3/cvsroot/namd2/src
In directory oberon:/Common/shared/kris/akeen/namd2/src

Modified Files:
	ReductionMgr.C 
Log Message:
Fixed the numNodes > nPatches bug. Dummy reduction is submitted on the nodes with no patches.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1028	Mon Nov 30 04:15:27 1998
   Repository revision:	1.1028	/Projects/l3/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1026)
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday November 29, 1998 @ 22:16
Author:	krishnan

Update of /Projects/l3/cvsroot/namd2/src
In directory oberon:/Common/shared/kris/akeen/namd2/src

Modified Files:
	ReductionMgr.h 
Log Message:
Added broadcastDoSubmit( ) and doDummySubmit().


===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1013	Mon Nov 30 04:16:08 1998
   Repository revision:	1.1013	/Projects/l3/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday November 29, 1998 @ 22:16
Author:	krishnan

Update of /Projects/l3/cvsroot/namd2/src
In directory oberon:/Common/shared/kris/akeen/namd2/src

Modified Files:
	ReductionMgr.ci 
Log Message:
Added CheckForPatchMsg and the entry point doDummySubmit().


===================================================================
File: ReductionMgr.ci  	Status: Up-to-date

   Working revision:	1.1003	Mon Nov 30 04:16:42 1998
   Repository revision:	1.1003	/Projects/l3/cvsroot/namd2/src/ReductionMgr.ci,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday December 3, 1998 @ 11:34
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/arch

Modified Files:
	Makearch.KCC-i486 
Log Message:
Switched C compiler from gcc to egcs.


===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.6	Thu Dec  3 17:32:33 1998
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Sunday December 6, 1998 @ 21:54
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C Controller.h SimParameters.C 
Log Message:
Constant pressure should work with multiple timestepping.
Still needs some testing.  Some debug code still enabled.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1051	Mon Dec  7 03:54:29 1998
   Repository revision:	1.1051	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1019	Mon Dec  7 03:54:30 1998
   Repository revision:	1.1019	/Projects/r1/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1052	Mon Dec  7 03:54:30 1998
   Repository revision:	1.1052	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday December 28, 1998 @ 16:42
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Molecule.C Molecule.h Parameters.C 
Log Message:
Eliminated unnecessary intPtr and RealPtr typedefs.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1033	Mon Dec 28 22:42:13 1998
   Repository revision:	1.1033	/Projects/r1/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1023	Mon Dec 28 22:42:14 1998
   Repository revision:	1.1023	/Projects/r1/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1008	Mon Dec 28 22:42:15 1998
   Repository revision:	1.1008	/Projects/r1/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 30, 1998 @ 15:49
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C 
Log Message:
Fixed bugs in extended system file output.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1052	Wed Dec 30 21:49:07 1998
   Repository revision:	1.1052	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 5, 1999 @ 18:56
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeAngles.C ComputeAngles.h ComputeBonds.C ComputeBonds.h 
	ComputeDPME.C ComputeDPMTA.C ComputeDihedrals.C 
	ComputeDihedrals.h ComputeFullDirect.C ComputeFullDirectBase.h 
	ComputeImpropers.C ComputeImpropers.h ComputeNonbondedBase.h 
	ComputeNonbondedUtil.C ComputeNonbondedUtil.h Controller.C 
	ReductionMgr.h Sequencer.C 
Log Message:
All compute objects except DPMTA now return diagonal of virial tensor.


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1010	Wed Jan  6 00:56:19 1999
   Repository revision:	1.1010	/Projects/r1/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1008	Wed Jan  6 00:56:20 1999
   Repository revision:	1.1008	/Projects/r1/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1009	Wed Jan  6 00:56:20 1999
   Repository revision:	1.1009	/Projects/r1/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1006	Wed Jan  6 00:56:20 1999
   Repository revision:	1.1006	/Projects/r1/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.6	Wed Jan  6 00:56:20 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1052	Wed Jan  6 00:56:20 1999
   Repository revision:	1.1052	/Projects/r1/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1011	Wed Jan  6 00:56:21 1999
   Repository revision:	1.1011	/Projects/r1/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1005	Wed Jan  6 00:56:21 1999
   Repository revision:	1.1005	/Projects/r1/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1017	Wed Jan  6 00:56:21 1999
   Repository revision:	1.1017	/Projects/r1/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1012)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirectBase.h	Status: Up-to-date

   Working revision:	1.2	Wed Jan  6 00:56:21 1999
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/ComputeFullDirectBase.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1010	Wed Jan  6 00:56:22 1999
   Repository revision:	1.1010	/Projects/r1/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1005	Wed Jan  6 00:56:22 1999
   Repository revision:	1.1005	/Projects/r1/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1042	Wed Jan  6 00:56:22 1999
   Repository revision:	1.1042	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1021	Wed Jan  6 00:56:23 1999
   Repository revision:	1.1021	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1017	Wed Jan  6 00:56:23 1999
   Repository revision:	1.1017	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1053	Wed Jan  6 00:56:23 1999
   Repository revision:	1.1053	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1014	Wed Jan  6 00:56:24 1999
   Repository revision:	1.1014	/Projects/r1/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1052	Wed Jan  6 00:56:24 1999
   Repository revision:	1.1052	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 6, 1999 @ 13:19
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Broadcasts.h Controller.C Lattice.h Sequencer.C 
	TestController.C 
Log Message:
Broadcast and Sequencers understand anisotropic volume rescaling factors.


===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.4	Wed Jan  6 19:19:19 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1054	Wed Jan  6 19:19:19 1999
   Repository revision:	1.1054	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1010	Wed Jan  6 19:19:20 1999
   Repository revision:	1.1010	/Projects/r1/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1053	Wed Jan  6 19:19:20 1999
   Repository revision:	1.1053	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: TestController.C 	Status: Up-to-date

   Working revision:	1.6	Wed Jan  6 19:19:21 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/src/TestController.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Wednesday January 6, 1999 @ 16:50
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C Controller.h Sequencer.C SimParameters.C 
	SimParameters.h 
Log Message:
Anisotropic (flexible cell) Langevin Piston pressure control finished.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1055	Wed Jan  6 22:50:30 1999
   Repository revision:	1.1055	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1020	Wed Jan  6 22:50:31 1999
   Repository revision:	1.1020	/Projects/r1/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1054	Wed Jan  6 22:50:31 1999
   Repository revision:	1.1054	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1053	Wed Jan  6 22:50:32 1999
   Repository revision:	1.1053	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1028	Wed Jan  6 22:50:33 1999
   Repository revision:	1.1028	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 6, 1999 @ 19:18
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Speed hacks to inner electrostatics loop.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1043	Thu Jan  7 01:18:29 1999
   Repository revision:	1.1043	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday January 8, 1999 @ 17:24
Author:	ferenc

Update of /Projects/r1/cvsroot/namd2/src
In directory jerusalem:/tmp_mnt/Projects/ising/namd2/src

Modified Files:
	ComputeRestraints.C 
Log Message:
added selective position restraints for specific Cartesian components

===================================================================
File: ComputeRestraints.C	Status: Up-to-date

   Working revision:	1.5	Fri Jan  8 23:24:26 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/ComputeRestraints.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)


****************************************
Date:	Friday January 8, 1999 @ 17:24
Author:	ferenc

Update of /Projects/r1/cvsroot/namd2/src
In directory jerusalem:/tmp_mnt/Projects/ising/namd2/src

Modified Files:
	ComputeRestraints.h 
Log Message:
added selective position restraints for specific Cartesian components

===================================================================
File: ComputeRestraints.h	Status: Up-to-date

   Working revision:	1.4	Fri Jan  8 23:24:34 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/ComputeRestraints.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)


****************************************
Date:	Friday January 8, 1999 @ 17:24
Author:	ferenc

Update of /Projects/r1/cvsroot/namd2/src
In directory jerusalem:/tmp_mnt/Projects/ising/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
added selective position restraints for specific Cartesian components

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1054	Fri Jan  8 23:24:49 1999
   Repository revision:	1.1054	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday January 8, 1999 @ 17:24
Author:	ferenc

Update of /Projects/r1/cvsroot/namd2/src
In directory jerusalem:/tmp_mnt/Projects/ising/namd2/src

Modified Files:
	SimParameters.h 
Log Message:
added selective position restraints for specific Cartesian components

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1029	Fri Jan  8 23:24:54 1999
   Repository revision:	1.1029	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday January 8, 1999 @ 17:45
Author:	ferenc

Update of /Projects/r1/cvsroot/namd2/ug
In directory jerusalem:/tmp_mnt/Projects/ising/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
added selective position restraints for specific Cartesian components

===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.6	Fri Jan  8 23:44:32 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Monday January 18, 1999 @ 15:53
Author:	brunner

Update of /Projects/l1/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/r1/user-projects/brunner/NAMD/namd2

Modified Files:
	Make.charm 
Log Message:
Changes to deal with recent Charm++ changes.  More extensive changes
may be needed soon, but this works for now.



===================================================================
File: Make.charm       	Status: Up-to-date

   Working revision:	1.2	Mon Jan 18 20:35:51 1999
   Repository revision:	1.2	/Projects/l1/cvsroot/namd2/Make.charm,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Monday January 18, 1999 @ 15:53
Author:	brunner

Update of /Projects/l1/cvsroot/namd2/src
In directory ophelia:/tmp_mnt/Projects/r1/user-projects/brunner/NAMD/namd2/src

Modified Files:
	CollectionMaster.C CollectionMgr.C ComputePatch.C 
	ComputePatchPair.C 
Log Message:
Changes to deal with recent Charm++ changes.  More extensive changes
may be needed soon, but this works for now.



===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1016	Mon Jan 18 21:53:55 1999
   Repository revision:	1.1016	/Projects/l1/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1013	Mon Jan 18 21:53:56 1999
   Repository revision:	1.1013	/Projects/l1/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1012	Mon Jan 18 21:53:57 1999
   Repository revision:	1.1012	/Projects/l1/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1015	Mon Jan 18 21:53:58 1999
   Repository revision:	1.1015	/Projects/l1/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 18, 1999 @ 15:55
Author:	brunner

Update of /Projects/l1/cvsroot/namd2
In directory ophelia:/tmp_mnt/Projects/r1/user-projects/brunner/NAMD/namd2

Modified Files:
	Make.charm 
Log Message:
Changed it back to the normal directory



===================================================================
File: Make.charm       	Status: Up-to-date

   Working revision:	1.3	Mon Jan 18 21:55:04 1999
   Repository revision:	1.3	/Projects/l1/cvsroot/namd2/Make.charm,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Tuesday February 2, 1999 @ 1:56
Author:	ferenc

Update of /Projects/r1/cvsroot/namd2/ug
In directory jerusalem:/tmp_mnt/Projects/ising/namd2/ug

Modified Files:
	ug_io.tex 
Log Message:
Added support for CHARMM parameter format in parameter files.


===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.4	Tue Feb  2 07:54:51 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Tuesday February 2, 1999 @ 2:02
Author:	ferenc

Update of /Projects/r1/cvsroot/namd2/src
In directory jerusalem:/tmp_mnt/Projects/ising/namd2/src

Modified Files:
	NamdState.C Node.C Parameters.C Parameters.h SimParameters.C 
	SimParameters.h 
Log Message:
Added support for CHARMM parameter format in parameter files.



===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1017	Tue Feb  2 08:02:31 1999
   Repository revision:	1.1017	/Projects/r1/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1032	Tue Feb  2 08:02:32 1999
   Repository revision:	1.1032	/Projects/r1/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1009	Tue Feb  2 08:02:34 1999
   Repository revision:	1.1009	/Projects/r1/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.1003	Tue Feb  2 08:02:35 1999
   Repository revision:	1.1003	/Projects/r1/cvsroot/namd2/src/Parameters.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1055	Tue Feb  2 08:02:36 1999
   Repository revision:	1.1055	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1030	Tue Feb  2 08:02:37 1999
   Repository revision:	1.1030	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 2, 1999 @ 15:35
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	Makefile ug.tex 
Added Files:
	ug_fenergy.tex 
Log Message:
Added free energy documentation from David Hurwitz.


===================================================================
File: ug_fenergy.tex   	Status: Up-to-date

   Working revision:	1.1	Tue Feb  2 21:30:59 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/ug/ug_fenergy.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.5	Tue Feb  2 20:48:12 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ug.tex           	Status: Up-to-date

   Working revision:	1.3	Tue Feb  2 21:35:29 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/ug/ug.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Wednesday February 3, 1999 @ 11:16
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_fenergy.tex 
Log Message:
Move from section to subsection.


===================================================================
File: ug_fenergy.tex   	Status: Up-to-date

   Working revision:	1.2	Wed Feb  3 17:06:04 1999
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/ug/ug_fenergy.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 3, 1999 @ 11:17
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Separated moving constraints from SMD.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.7	Wed Feb  3 17:01:55 1999
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Wednesday February 3, 1999 @ 11:18
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	namd_version.tex 
Log Message:
Added David Hurwitz as author for free energy code.


===================================================================
File: namd_version.tex 	Status: Up-to-date

   Working revision:	1.3	Wed Feb  3 16:44:51 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/ug/namd_version.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Wednesday February 3, 1999 @ 14:13
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Incorporated Sergei's changes to moving and rotating constraints.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.8	Wed Feb  3 20:10:39 1999
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Wednesday February 3, 1999 @ 14:44
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_add.tex ug_intro.tex ug_io.tex 
Log Message:
Fixed several configuration options.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.9	Wed Feb  3 20:42:39 1999
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.5	Wed Feb  3 20:44:59 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.5	Wed Feb  3 20:14:37 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Friday February 5, 1999 @ 15:04
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	PositionOwnerBox.h 
Log Message:
Fixed aCC error.


===================================================================
File: PositionOwnerBox.h	Status: Up-to-date

   Working revision:	1.1008	Fri Feb  5 17:21:24 1999
   Repository revision:	1.1008	/Projects/r1/cvsroot/namd2/src/PositionOwnerBox.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)


****************************************
Date:	Tuesday February 9, 1999 @ 18:11
Author:	ferenc

Update of /Projects/r1/cvsroot/namd2/src
In directory jerusalem:/tmp_mnt/Projects/ising/namd2/src

Modified Files:
	Parameters.C 
Log Message:
second argument of pow needs to be a real for kcc!


===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1010	Wed Feb 10 00:11:23 1999
   Repository revision:	1.1010	/Projects/r1/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 12, 1999 @ 15:55
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeDPME.C 
Log Message:
Fixed sign of virial from DPME.


===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.7	Fri Feb 12 21:55:15 1999
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Monday February 15, 1999 @ 17:49
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/arch

Modified Files:
	Makearch.Origin2000 
Added Files:
	Makearch.Origin2000-MPI 
Log Message:
Clarified Origin2000 vs Origin2000-MPI differences.


===================================================================
File: Makearch.Origin2000-MPI	Status: Up-to-date

   Working revision:	1.1	Mon Feb 15 23:34:17 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/arch/Makearch.Origin2000-MPI,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.15	Mon Feb 15 23:36:28 1999
   Repository revision:	1.15	/Projects/r1/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Monday February 15, 1999 @ 19:33
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpmta-2.6/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/dpmta-2.6/src

Modified Files:
	Makefile.converse 
Log Message:
Removed PVM_ARCH from compile line.


===================================================================
File: Makefile.converse	Status: Up-to-date

   Working revision:	1.6	Tue Feb 16 01:33:05 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/dpmta-2.6/src/Makefile.converse,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Monday February 15, 1999 @ 19:33
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpme2
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/dpme2

Modified Files:
	Makefile 
Log Message:
Removed PVM_ARCH from compile line.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.13	Tue Feb 16 00:43:58 1999
   Repository revision:	1.13	/Projects/r1/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.12)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.5)


****************************************
Date:	Tuesday February 16, 1999 @ 22:09
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeDPME.C ComputeDPMTA.C ComputeFreeEnergy.C 
	ComputeFullDirect.C ComputeGlobalMaster.C 
	ComputeGlobalMaster.h ComputeMDComm.C ComputeMgr.C 
	ComputeTcl.C 
Log Message:
Fixes to make optional force modules work with more nodes than patches.


===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.8	Wed Feb 17 04:09:54 1999
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1053	Wed Feb 17 04:09:55 1999
   Repository revision:	1.1053	/Projects/r1/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.14	Wed Feb 17 04:09:55 1999
   Repository revision:	1.14	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.12)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1018	Wed Feb 17 04:09:55 1999
   Repository revision:	1.1018	/Projects/r1/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1012)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeGlobalMaster.C	Status: Up-to-date

   Working revision:	1.3	Wed Feb 17 04:09:56 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/ComputeGlobalMaster.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeGlobalMaster.h	Status: Up-to-date

   Working revision:	1.4	Wed Feb 17 04:09:56 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/ComputeGlobalMaster.h,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeMDComm.C  	Status: Up-to-date

   Working revision:	1.2	Wed Feb 17 04:09:56 1999
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/ComputeMDComm.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1026	Wed Feb 17 04:09:56 1999
   Repository revision:	1.1026	/Projects/r1/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.9	Wed Feb 17 04:09:56 1999
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.7)


****************************************
Date:	Tuesday February 16, 1999 @ 22:38
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory istanbul:/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.depends 
Log Message:
Rebuilt dependencies, added many.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.23	Wed Feb 17 04:35:14 1999
   Repository revision:	1.23	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Tuesday February 16, 1999 @ 23:29
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ReductionMgr.C 
Log Message:
Fixed bug in more nodes than patches code.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1029	Wed Feb 17 05:29:01 1999
   Repository revision:	1.1029	/Projects/r1/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1026)
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 16, 1999 @ 23:43
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ReductionMgr.C 
Log Message:
Fixed memory leak in more nodes than patches code.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1030	Wed Feb 17 05:43:13 1999
   Repository revision:	1.1030	/Projects/r1/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1026)
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 17, 1999 @ 14:00
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C 
Log Message:
Added error checking to keep Berendsen pressure from blowing up.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1056	Wed Feb 17 20:00:43 1999
   Repository revision:	1.1056	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 17, 1999 @ 17:01
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory istanbul:/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Todo.txt 
Log Message:



===================================================================
File: Todo.txt         	Status: Up-to-date

   Working revision:	1.3	Wed Feb 17 23:00:35 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/Todo.txt,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday February 18, 1999 @ 22:46
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	main.C 
Log Message:
Changed version number to 2.0b3.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1012	Fri Feb 19 04:46:05 1999
   Repository revision:	1.1012	/Projects/r1/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 22, 1999 @ 20:01
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	namd_copyright.tex ug_intro.tex ug_io.tex ug_start.tex 
Log Message:
Small tweaks.


===================================================================
File: namd_copyright.tex	Status: Up-to-date

   Working revision:	1.3	Tue Feb 23 01:53:54 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/ug/namd_copyright.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.6	Tue Feb 23 02:01:13 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.6	Tue Feb 23 01:49:09 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.3	Tue Feb 23 01:42:07 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Monday February 22, 1999 @ 20:16
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_macros.tex 
Log Message:
Switched verb to tt in macros to please latex2html.


===================================================================
File: ug_macros.tex    	Status: Up-to-date

   Working revision:	1.2	Tue Feb 23 02:16:20 1999
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/ug/ug_macros.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Friday February 26, 1999 @ 0:57
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	namd_copyright.tex namd_macros.tex namd_title.tex 
	namd_version.tex ug.tex ug_add.tex ug_basic.tex ug_fenergy.tex 
	ug_io.tex ug_macros.tex ug_start.tex ug_xplor.tex 
Log Message:
Changes to make latex2html work.


===================================================================
File: namd_copyright.tex	Status: Up-to-date

   Working revision:	1.4	Fri Feb 26 06:16:00 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/ug/namd_copyright.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: namd_macros.tex  	Status: Up-to-date

   Working revision:	1.2	Fri Feb 26 06:57:15 1999
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/ug/namd_macros.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: namd_title.tex   	Status: Up-to-date

   Working revision:	1.3	Wed Feb 24 19:25:46 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/ug/namd_title.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: namd_version.tex 	Status: Up-to-date

   Working revision:	1.4	Thu Feb 25 01:06:20 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/ug/namd_version.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug.tex           	Status: Up-to-date

   Working revision:	1.4	Fri Feb 26 06:57:15 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/ug/ug.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.10	Wed Feb 24 19:43:48 1999
   Repository revision:	1.10	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.6	Wed Feb 24 20:42:10 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_fenergy.tex   	Status: Up-to-date

   Working revision:	1.3	Fri Feb 26 06:14:05 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/ug/ug_fenergy.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.7	Wed Feb 24 19:38:58 1999
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ug_macros.tex    	Status: Up-to-date

   Working revision:	1.3	Fri Feb 26 06:57:17 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/ug/ug_macros.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.4	Fri Feb 26 06:13:34 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_xplor.tex     	Status: Up-to-date

   Working revision:	1.2	Wed Feb 24 23:12:13 1999
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/ug/ug_xplor.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Friday February 26, 1999 @ 1:08
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	namd_title.tex 
Log Message:
Fixed minor title problem.


===================================================================
File: namd_title.tex   	Status: Up-to-date

   Working revision:	1.4	Fri Feb 26 07:00:08 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/ug/namd_title.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Friday February 26, 1999 @ 15:11
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_add.tex ug_fenergy.tex 
Log Message:
Small changes to make latex2html output look better.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.11	Fri Feb 26 20:50:51 1999
   Repository revision:	1.11	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_fenergy.tex   	Status: Up-to-date

   Working revision:	1.4	Fri Feb 26 20:56:00 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/ug/ug_fenergy.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday March 3, 1999 @ 12:01
Author:	brunner

Update of /Projects/l3/cvsroot/namd2/arch
In directory ophelia:/tmp_mnt/Projects/r1/user-projects/brunner/NAMD/namd2/arch

Added Files:
	Makearch.RED Makearch.UniSol 
Log Message:
Makefile data for Asci-Red and uniprocessor Solaris versions



===================================================================
File: Makearch.RED     	Status: Up-to-date

   Working revision:	1.1	Wed Mar  3 17:59:58 1999
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/arch/Makearch.RED,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.UniSol  	Status: Up-to-date

   Working revision:	1.1	Wed Mar  3 17:56:32 1999
   Repository revision:	1.1	/Projects/l3/cvsroot/namd2/arch/Makearch.UniSol,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday March 8, 1999 @ 17:02
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/tmp/namd2/src

Modified Files:
	main.C 
Log Message:
Modified startup message for experimental versions.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1013	Mon Mar  8 23:02:47 1999
   Repository revision:	1.1013	/Projects/r1/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 8, 1999 @ 19:44
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Molecule.C Molecule.h NamdState.C SimParameters.C 
	SimParameters.h 
Log Message:
Added langevinDamping and langevinHydrogen parameters.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1034	Tue Mar  9 01:44:14 1999
   Repository revision:	1.1034	/Projects/r1/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1024	Tue Mar  9 01:44:15 1999
   Repository revision:	1.1024	/Projects/r1/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1018	Tue Mar  9 01:44:15 1999
   Repository revision:	1.1018	/Projects/r1/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1056	Tue Mar  9 01:44:15 1999
   Repository revision:	1.1056	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1031	Tue Mar  9 01:44:17 1999
   Repository revision:	1.1031	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 8, 1999 @ 19:44
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Added langevinDamping and langevinHydrogen parameters.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.12	Tue Mar  9 01:30:05 1999
   Repository revision:	1.12	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Tuesday March 9, 1999 @ 14:58
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_add.tex ug_basic.tex ug_intro.tex ug_io.tex ug_start.tex 
	ug_xplor.tex 
Log Message:
Changed verb to tt in most places to help out latex2html.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.13	Tue Mar  9 20:53:12 1999
   Repository revision:	1.13	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.7	Tue Mar  9 20:49:59 1999
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.7	Tue Mar  9 20:58:47 1999
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.8	Tue Mar  9 20:46:10 1999
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.5	Tue Mar  9 20:49:11 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_xplor.tex     	Status: Up-to-date

   Working revision:	1.3	Tue Mar  9 20:49:42 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/ug/ug_xplor.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Tuesday March 9, 1999 @ 16:49
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	Makefile 
Log Message:
Added html target to preserve latex2html arguments.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.6	Tue Mar  9 21:17:38 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Tuesday March 9, 1999 @ 18:52
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeDPME.C 
Log Message:
Adding timing output for PME reciprocal sum.


===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.9	Wed Mar 10 00:52:26 1999
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Tuesday March 9, 1999 @ 23:11
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C Sequencer.C SimParameters.C SimParameters.h 
Log Message:
Added reassignHold parameter.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1057	Wed Mar 10 05:11:33 1999
   Repository revision:	1.1057	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1055	Wed Mar 10 05:11:34 1999
   Repository revision:	1.1055	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1057	Wed Mar 10 05:11:34 1999
   Repository revision:	1.1057	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1032	Wed Mar 10 05:11:35 1999
   Repository revision:	1.1032	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 9, 1999 @ 23:11
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Added reassignHold parameter.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.14	Wed Mar 10 05:02:47 1999
   Repository revision:	1.14	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Wednesday March 10, 1999 @ 12:15
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Added output for binary output file usage.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1058	Wed Mar 10 18:15:48 1999
   Repository revision:	1.1058	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 10, 1999 @ 12:16
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_add.tex ug_io.tex 
Log Message:
Documented binaryOutput, fixes for latex2html.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.15	Wed Mar 10 18:04:34 1999
   Repository revision:	1.15	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.9	Wed Mar 10 17:58:48 1999
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Wednesday March 10, 1999 @ 14:22
Author:	jim

Update of /Projects/r1/cvsroot/CVSROOT
In directory istanbul:/tmp/CVSROOT

Modified Files:
	loginfo 
Log Message:
Removed milind and sergei from mailing list.


===================================================================
File: loginfo          	Status: Up-to-date

   Working revision:	1.4	Wed Mar 10 20:21:44 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/CVSROOT/loginfo,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday March 10, 1999 @ 14:25
Author:	jim

Update of /Projects/r1/cvsroot/CVSROOT
In directory ophelia:/tmp_mnt/Home/l1/jim/tmp/CVSROOT

Modified Files:
	loginfo 
Log Message:
Commit needed to be done on hp becuase /usr/local/bin/mkmodules not found.


===================================================================
File: loginfo          	Status: Up-to-date

   Working revision:	1.5	Wed Mar 10 20:23:56 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/CVSROOT/loginfo,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday March 10, 1999 @ 14:31
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_add.tex ug_fenergy.tex 
Log Message:
Fixes to free energy section.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.16	Wed Mar 10 20:03:32 1999
   Repository revision:	1.16	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_fenergy.tex   	Status: Up-to-date

   Working revision:	1.5	Wed Mar 10 19:53:39 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/ug/ug_fenergy.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.4)


****************************************
Date:	Wednesday March 10, 1999 @ 15:48
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C 
Log Message:
Added remaining time to timing output.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1058	Wed Mar 10 21:48:26 1999
   Repository revision:	1.1058	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 10, 1999 @ 17:03
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	PDB.C PDBData.C 
Log Message:
Eliminated warnings sent to stderr.


===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1007	Wed Mar 10 23:03:14 1999
   Repository revision:	1.1007	/Projects/r1/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.C        	Status: Up-to-date

   Working revision:	1.1005	Wed Mar 10 23:03:14 1999
   Repository revision:	1.1005	/Projects/r1/cvsroot/namd2/src/PDBData.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 11, 1999 @ 20:08
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Molecule.C Molecule.h Controller.C 
Log Message:
Fixed bug detection to deal with fixed atom optimizations.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1035	Fri Mar 12 02:08:33 1999
   Repository revision:	1.1035	/Projects/r1/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1025	Fri Mar 12 02:08:35 1999
   Repository revision:	1.1025	/Projects/r1/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1059	Fri Mar 12 02:08:35 1999
   Repository revision:	1.1059	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 15, 1999 @ 21:41
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory asuncion:/tmp/namd2/arch

Modified Files:
	Makearch.Solaris 
Log Message:
Tweaks for new Solaris compilers.


===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.10	Tue Mar 16 03:22:09 1999
   Repository revision:	1.10	/Projects/r1/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Monday March 15, 1999 @ 21:42
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory asuncion:/tmp/namd2/src

Modified Files:
	Rebalancer.C 
Log Message:
Tweaks for new Solaris compilers.


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.20	Tue Mar 16 03:07:18 1999
   Repository revision:	1.20	/Projects/r1/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)


****************************************
Date:	Wednesday March 17, 1999 @ 11:54
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Parameters.C 
Log Message:
Added synonyms for angle, dihe, impr for charm19 parameter sets.


===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1011	Wed Mar 17 17:54:18 1999
   Repository revision:	1.1011	/Projects/r1/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 17, 1999 @ 11:59
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	AlgSeven.C CollectionMaster.h CollectionMgr.h ComputeMgr.h 
	Controller.C FreeEnergyLambda.C FreeEnergyParse.C 
	FreeEnergyRestrain.C HomePatch.C ParseOptions.C Rebalancer.C 
	SMD.C TclCommands.C 
Log Message:
Eliminated compiler warnings and errors.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.15	Sat Mar 13 21:09:34 1999
   Repository revision:	1.15	/Projects/r1/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1013	Wed Mar 17 17:59:22 1999
   Repository revision:	1.1013	/Projects/r1/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1009	Wed Mar 17 17:59:22 1999
   Repository revision:	1.1009	/Projects/r1/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1014	Wed Mar 17 17:59:22 1999
   Repository revision:	1.1014	/Projects/r1/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1013)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1060	Wed Mar 17 17:59:23 1999
   Repository revision:	1.1060	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: FreeEnergyLambda.C	Status: Up-to-date

   Working revision:	1.6	Wed Mar 17 17:59:23 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/src/FreeEnergyLambda.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: FreeEnergyParse.C	Status: Up-to-date

   Working revision:	1.4	Wed Mar 17 17:59:24 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/FreeEnergyParse.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyRestrain.C	Status: Up-to-date

   Working revision:	1.6	Wed Mar 17 17:59:24 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/src/FreeEnergyRestrain.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1049	Wed Mar 17 17:59:24 1999
   Repository revision:	1.1049	/Projects/r1/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1009	Wed Mar 17 17:59:25 1999
   Repository revision:	1.1009	/Projects/r1/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.21	Wed Mar 17 17:57:48 1999
   Repository revision:	1.21	/Projects/r1/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: SMD.C            	Status: Up-to-date

   Working revision:	1.9	Sat Mar 13 22:19:35 1999
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/src/SMD.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: TclCommands.C    	Status: Up-to-date

   Working revision:	1.4	Wed Mar 17 17:59:26 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/TclCommands.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Wednesday March 17, 1999 @ 13:57
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C Sequencer.C 
Log Message:
Fixed logic bug in reassignment.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1061	Wed Mar 17 19:57:57 1999
   Repository revision:	1.1061	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1056	Wed Mar 17 19:57:58 1999
   Repository revision:	1.1056	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 17, 1999 @ 15:26
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C Sequencer.C TestSequencer.C SimParameters.C 
	SimParameters.h 
Log Message:
Switching internal nomenclature from fmaFrequency to fullElectFrequency.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1062	Wed Mar 17 21:26:32 1999
   Repository revision:	1.1062	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1057	Wed Mar 17 21:26:33 1999
   Repository revision:	1.1057	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: TestSequencer.C  	Status: Up-to-date

   Working revision:	1.6	Wed Mar 17 21:26:34 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/src/TestSequencer.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1059	Wed Mar 17 21:26:34 1999
   Repository revision:	1.1059	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1033	Wed Mar 17 21:26:35 1999
   Repository revision:	1.1033	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 17, 1999 @ 15:49
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Switch to fullElectFrequency for external parameter as well.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1060	Wed Mar 17 21:49:57 1999
   Repository revision:	1.1060	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 17, 1999 @ 17:33
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_fenergy.tex 
Log Message:
Formatting fixes.


===================================================================
File: ug_fenergy.tex   	Status: Up-to-date

   Working revision:	1.6	Wed Mar 17 23:19:25 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/ug/ug_fenergy.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.4)


****************************************
Date:	Wednesday March 17, 1999 @ 19:49
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	Makefile namd_macros.tex ug_add.tex ug_avail.tex ug_basic.tex 
	ug_intro.tex ug_io.tex ug_start.tex 
Log Message:
Many changes, now mostly ready for 2.0 release.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.7	Wed Mar 17 23:20:56 1999
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: namd_macros.tex  	Status: Up-to-date

   Working revision:	1.3	Thu Mar 18 01:49:49 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/ug/namd_macros.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.17	Wed Mar 17 22:32:51 1999
   Repository revision:	1.17	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_avail.tex     	Status: Up-to-date

   Working revision:	1.3	Thu Mar 18 01:49:50 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/ug/ug_avail.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.8	Wed Mar 17 22:10:30 1999
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.8	Thu Mar 18 01:49:51 1999
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.10	Wed Mar 17 20:45:38 1999
   Repository revision:	1.10	/Projects/r1/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.6	Thu Mar 18 00:48:32 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Wednesday March 17, 1999 @ 20:16
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	namd_copyright.tex ug_add.tex ug_avail.tex ug_intro.tex 
	ug_io.tex ug_runit.tex ug_start.tex 
Log Message:
Spelling fixes.


===================================================================
File: namd_copyright.tex	Status: Up-to-date

   Working revision:	1.5	Thu Mar 18 02:01:27 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/ug/namd_copyright.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.18	Thu Mar 18 02:06:54 1999
   Repository revision:	1.18	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_avail.tex     	Status: Up-to-date

   Working revision:	1.4	Thu Mar 18 02:16:49 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/ug/ug_avail.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.9	Thu Mar 18 02:16:49 1999
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.11	Thu Mar 18 02:15:19 1999
   Repository revision:	1.11	/Projects/r1/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ug_runit.tex     	Status: Up-to-date

   Working revision:	1.3	Thu Mar 18 02:16:49 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/ug/ug_runit.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.7	Thu Mar 18 02:13:32 1999
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Wednesday March 17, 1999 @ 20:25
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_basic.tex ug_xplor.tex 
Log Message:
Eliminated references to vdwcutoff.


===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.9	Thu Mar 18 02:24:31 1999
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_xplor.tex     	Status: Up-to-date

   Working revision:	1.4	Thu Mar 18 02:23:15 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/ug/ug_xplor.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Wednesday March 17, 1999 @ 20:29
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Improved some parameter handling.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1061	Thu Mar 18 02:29:04 1999
   Repository revision:	1.1061	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 17, 1999 @ 20:32
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	common.C 
Log Message:
NAMD_write returns system error message.


===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1016	Thu Mar 18 02:32:44 1999
   Repository revision:	1.1016	/Projects/r1/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 17, 1999 @ 20:41
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	BroadcastClient.C Compute.C ComputeNonbondedPair.C 
	ComputeNonbondedSelf.C 
Log Message:
Turned off stray DEBUGM code.


===================================================================
File: BroadcastClient.C	Status: Up-to-date

   Working revision:	1.3	Thu Mar 18 02:41:15 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/BroadcastClient.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1019	Thu Mar 18 02:41:15 1999
   Repository revision:	1.1019	/Projects/r1/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1017	Thu Mar 18 02:41:15 1999
   Repository revision:	1.1017	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1012	Thu Mar 18 02:41:16 1999
   Repository revision:	1.1012	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 17, 1999 @ 20:59
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C 
Log Message:
Eliminated pressure debugging outputs.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1063	Thu Mar 18 02:59:11 1999
   Repository revision:	1.1063	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 18, 1999 @ 12:22
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/arch

Modified Files:
	Makearch.HPUX10 Makearch.HPUX9 Makearch.KCC Makearch.KCC-i486 
	Makearch.Origin2000 Makearch.Origin2000-MPI Makearch.RED 
	Makearch.SP3 Makearch.exemplar Makearch.g++ Makearch.g++-i486 
Log Message:
Eliminated unused options.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.15	Thu Mar 18 17:05:33 1999
   Repository revision:	1.15	/Projects/r1/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.3)

===================================================================
File: Makearch.HPUX9   	Status: Up-to-date

   Working revision:	1.9	Thu Mar 18 17:05:40 1999
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/arch/Makearch.HPUX9,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.KCC     	Status: Up-to-date

   Working revision:	1.8	Thu Mar 18 17:05:53 1999
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.7	Thu Mar 18 17:09:12 1999
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.16	Thu Mar 18 17:12:00 1999
   Repository revision:	1.16	/Projects/r1/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.15)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Origin2000-MPI	Status: Up-to-date

   Working revision:	1.2	Thu Mar 18 17:12:20 1999
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/arch/Makearch.Origin2000-MPI,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1)

===================================================================
File: Makearch.RED     	Status: Up-to-date

   Working revision:	1.2	Thu Mar 18 17:09:51 1999
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/arch/Makearch.RED,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1)

===================================================================
File: Makearch.SP3     	Status: Up-to-date

   Working revision:	1.7	Thu Mar 18 17:12:58 1999
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/arch/Makearch.SP3,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.exemplar	Status: Up-to-date

   Working revision:	1.5	Thu Mar 18 17:13:06 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/arch/Makearch.exemplar,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: Makearch.g++     	Status: Up-to-date

   Working revision:	1.11	Thu Mar 18 17:10:58 1999
   Repository revision:	1.11	/Projects/r1/cvsroot/namd2/arch/Makearch.g++,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.10)
	release-2-0-beta-2       	(revision: 1.10)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.g++-i486	Status: Up-to-date

   Working revision:	1.3	Thu Mar 18 17:11:15 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/arch/Makearch.g++-i486,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.2)


****************************************
Date:	Thursday March 18, 1999 @ 13:47
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/arch

Modified Files:
	Makearch.Solaris 
Log Message:
Enabled warnings.


===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.11	Thu Mar 18 18:44:27 1999
   Repository revision:	1.11	/Projects/r1/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Thursday March 18, 1999 @ 16:05
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory istanbul:/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Makefile 
Log Message:
Added FFTW library flag.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1069	Fri Mar 12 02:30:44 1999
   Repository revision:	1.1069	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 18, 1999 @ 16:06
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpme2
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/dpme2

Modified Files:
	Makefile bspline2.c charge_grid2.c dpme2_recip_sumW.c 
	fftcalls.c pmesh_kspace2.c protype.h 
Log Message:
Added FFTW flags and performance changes.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.14	Fri Mar 12 02:30:33 1999
   Repository revision:	1.14	/Projects/r1/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.13)
	release-2-0-beta-2       	(revision: 1.12)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.5)

===================================================================
File: bspline2.c       	Status: Up-to-date

   Working revision:	1.4	Thu Mar 11 19:14:23 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/dpme2/bspline2.c,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.3)

===================================================================
File: charge_grid2.c   	Status: Up-to-date

   Working revision:	1.5	Thu Mar 11 19:43:06 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/dpme2/charge_grid2.c,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)

===================================================================
File: dpme2_recip_sumW.c	Status: Up-to-date

   Working revision:	1.3	Thu Mar 18 22:06:32 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/dpme2/dpme2_recip_sumW.c,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: fftcalls.c       	Status: Up-to-date

   Working revision:	1.5	Fri Mar 12 03:45:02 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/dpme2/fftcalls.c,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)

===================================================================
File: pmesh_kspace2.c  	Status: Up-to-date

   Working revision:	1.6	Thu Mar 11 19:18:28 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/dpme2/pmesh_kspace2.c,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)

===================================================================
File: protype.h        	Status: Up-to-date

   Working revision:	1.4	Thu Mar 18 22:06:32 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/dpme2/protype.h,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.3)


****************************************
Date:	Thursday March 18, 1999 @ 19:00
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Minor bug fix.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1062	Fri Mar 19 01:00:18 1999
   Repository revision:	1.1062	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 18, 1999 @ 21:21
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Fixed XSTfreq option.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.19	Fri Mar 19 03:18:56 1999
   Repository revision:	1.19	/Projects/r1/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday March 19, 1999 @ 17:03
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C HomePatch.C HomePatch.h Sequencer.C Sequencer.h 
Log Message:
Fixed bugs in constant pressure code.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1064	Fri Mar 19 23:03:00 1999
   Repository revision:	1.1064	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1050	Fri Mar 19 23:03:01 1999
   Repository revision:	1.1050	/Projects/r1/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1018	Fri Mar 19 23:03:01 1999
   Repository revision:	1.1018	/Projects/r1/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1058	Fri Mar 19 23:03:02 1999
   Repository revision:	1.1058	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1021	Fri Mar 19 23:03:02 1999
   Repository revision:	1.1021	/Projects/r1/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 21, 1999 @ 23:44
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C 
Log Message:
Fixed bug in langevinPiston routine.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1065	Mon Mar 22 05:43:58 1999
   Repository revision:	1.1065	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 21, 1999 @ 23:54
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	main.C 
Log Message:
Changed message to release 2.0 version.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1014	Mon Mar 22 05:54:21 1999
   Repository revision:	1.1014	/Projects/r1/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 22, 1999 @ 11:45
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory ophelia:/tmp/namd2/arch

Modified Files:
	Makearch.HPUX10 Makearch.HPUX9 Makearch.RED Makearch.SP3 
	Makearch.T3E Makearch.template 
Log Message:
Added COPTS and eliminated CFLAGS as needed to optimize DPMTA.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.16	Mon Mar 22 17:39:08 1999
   Repository revision:	1.16	/Projects/r1/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.3)

===================================================================
File: Makearch.HPUX9   	Status: Up-to-date

   Working revision:	1.10	Mon Mar 22 17:43:40 1999
   Repository revision:	1.10	/Projects/r1/cvsroot/namd2/arch/Makearch.HPUX9,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.RED     	Status: Up-to-date

   Working revision:	1.3	Mon Mar 22 17:39:45 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/arch/Makearch.RED,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1)

===================================================================
File: Makearch.SP3     	Status: Up-to-date

   Working revision:	1.8	Mon Mar 22 17:42:53 1999
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/arch/Makearch.SP3,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.11	Mon Mar 22 17:41:11 1999
   Repository revision:	1.11	/Projects/r1/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.10)
	release-2-0-beta-2       	(revision: 1.10)
	release-alpha-1          	(revision: 1.4)

===================================================================
File: Makearch.template	Status: Up-to-date

   Working revision:	1.7	Mon Mar 22 17:43:12 1999
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/arch/Makearch.template,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Monday March 22, 1999 @ 14:55
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpme2
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/dpme2

Modified Files:
	Makefile cffti1.c charge_grid2.c dpme2_recip_sumW.c 
	dpme2_utilityW.c dpme2def.h fftcalls.c pmesh_kspace2.c 
	protype.h pub3dfft.c 
Log Message:
DPME now compiles using C compiler.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.15	Mon Mar 22 17:54:50 1999
   Repository revision:	1.15	/Projects/r1/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.13)
	release-2-0-beta-2       	(revision: 1.12)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.5)

===================================================================
File: cffti1.c         	Status: Up-to-date

   Working revision:	1.5	Mon Mar 22 20:05:00 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/dpme2/cffti1.c,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.3)

===================================================================
File: charge_grid2.c   	Status: Up-to-date

   Working revision:	1.6	Mon Mar 22 20:10:50 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/dpme2/charge_grid2.c,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)

===================================================================
File: dpme2_recip_sumW.c	Status: Up-to-date

   Working revision:	1.4	Mon Mar 22 20:55:31 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/dpme2/dpme2_recip_sumW.c,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: dpme2_utilityW.c 	Status: Up-to-date

   Working revision:	1.5	Mon Mar 22 20:55:32 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/dpme2/dpme2_utilityW.c,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: dpme2def.h       	Status: Up-to-date

   Working revision:	1.5	Mon Mar 22 20:33:57 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/dpme2/dpme2def.h,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.3)

===================================================================
File: fftcalls.c       	Status: Up-to-date

   Working revision:	1.6	Mon Mar 22 20:12:28 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/dpme2/fftcalls.c,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)

===================================================================
File: pmesh_kspace2.c  	Status: Up-to-date

   Working revision:	1.7	Mon Mar 22 20:12:57 1999
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/dpme2/pmesh_kspace2.c,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)

===================================================================
File: protype.h        	Status: Up-to-date

   Working revision:	1.5	Mon Mar 22 20:55:34 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/dpme2/protype.h,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.3)

===================================================================
File: pub3dfft.c       	Status: Up-to-date

   Working revision:	1.5	Mon Mar 22 20:14:17 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/dpme2/pub3dfft.c,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)


****************************************
Date:	Monday March 22, 1999 @ 14:55
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeDPME.C ComputeNonbondedUtil.C 
Log Message:
DPME now compiles using C compiler.


===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.10	Mon Mar 22 20:55:43 1999
   Repository revision:	1.10	/Projects/r1/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1022	Mon Mar 22 20:55:44 1999
   Repository revision:	1.1022	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 1, 1999 @ 14:52
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	main.C 
Log Message:
Added experimental version warning.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1015	Thu Apr  1 20:52:14 1999
   Repository revision:	1.1015	/Projects/r1/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 6, 1999 @ 15:29
Author:	hurwitz

Update of /Projects/r1/cvsroot/namd2/src
In directory hamlet.ks.uiuc.edu:/tmp_mnt/Projects/namd2/Programmers/hurwitz/namd2/src

Modified Files:
	FreeEnergyParse.C 
Log Message:
read white-space at start of restraints file


===================================================================
File: FreeEnergyParse.C	Status: Up-to-date

   Working revision:	1.5	Tue Apr  6 20:29:37 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/FreeEnergyParse.C,v

   Existing Tags:
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Tuesday April 13, 1999 @ 3:18
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Scr/oberon/jim/water/namd2/src

Modified Files:
	ComputeFullDirect.C MStream.C MStream.h 
Log Message:
Eliminated memory leaks and corruption in MStream and ComputeFullDirect.


===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1019	Tue Apr 13 08:17:58 1999
   Repository revision:	1.1019	/Projects/r1/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1012)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: MStream.C        	Status: Up-to-date

   Working revision:	1.4	Tue Apr 13 06:23:02 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/src/MStream.C,v

   Existing Tags:
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: MStream.h        	Status: Up-to-date

   Working revision:	1.5	Tue Apr 13 03:59:25 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/MStream.h,v

   Existing Tags:
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Tuesday April 13, 1999 @ 20:56
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Scr/oberon/jim/freeenergy/namd2/src

Modified Files:
	ComputeFreeEnergy.C ConfigList.C 
Log Message:
Fixed problems with free energy config file reading.


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.15	Wed Apr 14 01:56:25 1999
   Repository revision:	1.15	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	release-2-0              	(revision: 1.14)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.12)

===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1009	Wed Apr 14 01:56:25 1999
   Repository revision:	1.1009	/Projects/r1/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 14, 1999 @ 10:48
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Scr/oberon/jim/freeenergy/namd2/src

Modified Files:
	ComputeFreeEnergy.C 
Log Message:
Added error checking to file open.


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.16	Wed Apr 14 15:48:31 1999
   Repository revision:	1.16	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	release-2-0              	(revision: 1.14)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.12)


****************************************
Date:	Wednesday April 14, 1999 @ 11:07
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Scr/oberon/jim/freeenergy/namd2/src

Modified Files:
	common.C 
Log Message:
Added second message (to stdout) to NAMD_die.


===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1017	Wed Apr 14 16:07:58 1999
   Repository revision:	1.1017	/Projects/r1/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 14, 1999 @ 14:24
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Scr/oberon/jim/water/namd2/src

Modified Files:
	MStream.h 
Log Message:
Minor reordering.


===================================================================
File: MStream.h        	Status: Up-to-date

   Working revision:	1.6	Wed Apr 14 19:13:32 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/src/MStream.h,v

   Existing Tags:
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Thursday April 15, 1999 @ 2:22
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory oberon.ks.uiuc.edu:/export/scr/jim/water/namd2/src

Modified Files:
	MStream.C MStream.h 
Log Message:
Eliminated empty/unreceived/duplicate messages.


===================================================================
File: MStream.C        	Status: Up-to-date

   Working revision:	1.5	Thu Apr 15 07:17:11 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/MStream.C,v

   Existing Tags:
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: MStream.h        	Status: Up-to-date

   Working revision:	1.7	Thu Apr 15 06:43:08 1999
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/src/MStream.h,v

   Existing Tags:
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Wednesday April 21, 1999 @ 10:54
Author:	jim

Update of /Projects/r1/cvsroot/namd2/ug
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/ug

Modified Files:
	namd_copyright.tex 
Log Message:
Fixed paper citation.


===================================================================
File: namd_copyright.tex	Status: Up-to-date

   Working revision:	1.6	Wed Apr 21 15:48:37 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/ug/namd_copyright.tex,v

   Existing Tags:
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday April 22, 1999 @ 23:53
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpmta-2.6/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/dpmta-2.6/src

Modified Files:
	dpmta_t3dlib.c 
Log Message:
Added missing return statements assumed to be zero.


===================================================================
File: dpmta_t3dlib.c   	Status: Up-to-date

   Working revision:	1.4	Fri Apr 23 04:53:28 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/dpmta-2.6/src/dpmta_t3dlib.c,v

   Existing Tags:
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Friday April 23, 1999 @ 1:20
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory asuncion:/Projects/namd2/Programmers/jim/namd2/arch

Modified Files:
	Makearch.Solaris 
Log Message:
Eliminated -fsimple=2 which caused DPMTA to blow up.


===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.12	Fri Apr 23 06:15:40 1999
   Repository revision:	1.12	/Projects/r1/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Friday April 23, 1999 @ 1:25
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpmta-2.6/mpole
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/dpmta-2.6/mpole

Modified Files:
	mpe.h mpe_fft.c mpe_mpoleC.c mpe_mpoleLJ.c 
Log Message:
Added prototypes, switched return types to void.


===================================================================
File: mpe.h            	Status: Up-to-date

   Working revision:	1.4	Fri Apr 23 06:25:03 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/dpmta-2.6/mpole/mpe.h,v

   Existing Tags:
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)

===================================================================
File: mpe_fft.c        	Status: Up-to-date

   Working revision:	1.2	Fri Apr 23 06:25:03 1999
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/dpmta-2.6/mpole/mpe_fft.c,v

   Existing Tags:
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)

===================================================================
File: mpe_mpoleC.c     	Status: Up-to-date

   Working revision:	1.3	Fri Apr 23 06:25:03 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/dpmta-2.6/mpole/mpe_mpoleC.c,v

   Existing Tags:
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: mpe_mpoleLJ.c    	Status: Up-to-date

   Working revision:	1.2	Fri Apr 23 06:25:04 1999
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/dpmta-2.6/mpole/mpe_mpoleLJ.c,v

   Existing Tags:
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Friday April 23, 1999 @ 15:13
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeDPMTA.C 
Log Message:
Dies on startup failure.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1054	Fri Apr 23 20:13:52 1999
   Repository revision:	1.1054	/Projects/r1/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-0              	(revision: 1.1053)
	release-2-0-beta-3       	(revision: 1.1053)
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Tuesday April 27, 1999 @ 18:43
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Sequencer.C Sequencer.h 
Log Message:
Switched Langevin dynamics integrator to a two-part version of BBK.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1059	Tue Apr 27 23:43:03 1999
   Repository revision:	1.1059	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1022	Tue Apr 27 23:43:03 1999
   Repository revision:	1.1022	/Projects/r1/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 28, 1999 @ 17:50
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
Fixed tolerance and increased speed for SHAKE/RATTLE.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1051	Wed Apr 28 22:50:38 1999
   Repository revision:	1.1051	/Projects/r1/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 29, 1999 @ 10:29
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory titan.ks.uiuc.edu:/tmp/jim/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Reduced optimization for full direct code because of strange errors.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.24	Wed Apr 28 21:59:19 1999
   Repository revision:	1.24	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1070	Wed Apr 28 21:57:17 1999
   Repository revision:	1.1070	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 29, 1999 @ 10:31
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory titan.ks.uiuc.edu:/tmp/jim/namd2/arch

Modified Files:
	Makearch.Origin2000 Makearch.Origin2000-MPI 
Log Message:
Eliminated -g from thread options.


===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.17	Wed Apr 28 22:00:44 1999
   Repository revision:	1.17	/Projects/r1/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.15)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Origin2000-MPI	Status: Up-to-date

   Working revision:	1.3	Thu Apr 29 15:30:47 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/arch/Makearch.Origin2000-MPI,v

   Existing Tags:
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.1)


****************************************
Date:	Thursday April 29, 1999 @ 10:39
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Scr/oberon/jim/water/namd2/src

Modified Files:
	ReductionMgr.C 
Log Message:
Added check for extra reduction submissions.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1031	Thu Apr 29 15:39:23 1999
   Repository revision:	1.1031	/Projects/r1/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-2-0              	(revision: 1.1030)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1026)
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday May 7, 1999 @ 14:19
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory hamlet.ks.uiuc.edu:/tmp/cvs-serv27583

Modified Files:
	Makefile 
Log Message:
Generalized FFTW to FFT.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1071	Fri May  7 19:19:06 1999
   Repository revision:	1.1071	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday May 7, 1999 @ 14:19
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpme2
In directory hamlet.ks.uiuc.edu:/tmp/cvs-serv27583/dpme2

Modified Files:
	Makefile 
Log Message:
Generalized FFTW to FFT.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.16	Fri May  7 19:19:07 1999
   Repository revision:	1.16	/Projects/r1/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.13)
	release-2-0-beta-2       	(revision: 1.12)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.5)


****************************************
Date:	Friday May 7, 1999 @ 15:13
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory istanbul:/Projects/namd2/Programmers/jim/namd2

Modified Files:
	config 
Log Message:
Now allows for builds outside of source directory.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.6	Fri May  7 20:08:55 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/config,v

   Existing Tags:
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Monday May 10, 1999 @ 11:22
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory hamlet.ks.uiuc.edu:/tmp/cvs-serv28370

Modified Files:
	Makearch.Origin2000-MPI 
Log Message:
Added new optimization options and SGI FFT libraries.


===================================================================
File: Makearch.Origin2000-MPI	Status: Up-to-date

   Working revision:	1.4	Mon May 10 16:22:55 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/arch/Makearch.Origin2000-MPI,v

   Existing Tags:
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.1)


****************************************
Date:	Monday May 10, 1999 @ 11:25
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpme2
In directory hamlet.ks.uiuc.edu:/tmp/cvs-serv28470/dpme2

Modified Files:
	fftcalls.c 
Log Message:
Added SGI FFT library calls.


===================================================================
File: fftcalls.c       	Status: Up-to-date

   Working revision:	1.7	Mon May 10 16:25:22 1999
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/dpme2/fftcalls.c,v

   Existing Tags:
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)


****************************************
Date:	Tuesday May 11, 1999 @ 18:10
Author:	brunner

Update of /Projects/r1/cvsroot/namd2
In directory tirana.ks.uiuc.edu:/Projects/r1/brunner/NAMD/milinds-namd/namd2

Modified Files:
	Make.depends 
Log Message:
New charm changes


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.25	Tue May 11 20:51:47 1999
   Repository revision:	1.25	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syn	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Tuesday May 11, 1999 @ 18:55
Author:	brunner

Update of /Projects/r1/cvsroot/namd2
In directory tirana.ks.uiuc.edu:/Projects/r1/brunner/NAMD/milinds-namd/namd2

Modified Files:
	Make.charm Makefile 
Log Message:
Changes for new charm version



===================================================================
File: Make.charm       	Status: Up-to-date

   Working revision:	1.4	Wed May  5 15:46:04 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/Make.charm,v

   Existing Tags:
	release-2-0-pre-charm-syn	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1072	Tue May 11 22:59:54 1999
   Repository revision:	1.1072	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syn	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday May 11, 1999 @ 18:56
Author:	brunner

Update of /Projects/r1/cvsroot/namd2/arch
In directory tirana.ks.uiuc.edu:/Projects/r1/brunner/NAMD/milinds-namd/namd2/arch

Modified Files:
	Makearch.HPUX10 
Log Message:
Changes for new charm version



===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.17	Tue May 11 22:22:09 1999
   Repository revision:	1.17	/Projects/r1/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-2-0-pre-charm-syn	(revision: 1.16)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Tuesday May 11, 1999 @ 18:56
Author:	brunner

Update of /Projects/r1/cvsroot/namd2/src
In directory tirana.ks.uiuc.edu:/Projects/r1/brunner/NAMD/milinds-namd/namd2/src

Modified Files:
	AtomMap.C BOCgroup.h BroadcastMgr.C BroadcastMgr.ci 
	BroadcastMgr.h CollectionMaster.C CollectionMaster.ci 
	CollectionMaster.h CollectionMgr.C CollectionMgr.ci 
	CollectionMgr.h Compute.C ComputeDPME.C ComputeDPMEMsgs.C 
	ComputeDPMEMsgs.h ComputeDPMTA.C ComputeFreeEnergy.C 
	ComputeFullDirect.C ComputeGeneral.C ComputeGlobal.C 
	ComputeGlobalMaster.C ComputeGlobalMsgs.C ComputeGlobalMsgs.h 
	ComputeHomeTuples.h ComputeMDComm.C ComputeMap.C ComputeMap.h 
	ComputeMgr.C ComputeMgr.ci ComputeMgr.h ComputeNonbondedExcl.C 
	ComputePatch.C ComputePatchPair.C ComputeTcl.C Controller.C 
	Controller.h Debug.h HomePatch.C InfoStream.C InfoStream.h 
	Inform.C LdbCoordinator.C LdbCoordinator.ci LdbCoordinator.h 
	MigrateAtomsMsg.C MigrateAtomsMsg.h Namd.C Namd.h 
	NamdOneTools.C Node.C Node.ci Node.h Output.C OwnerBox.h 
	Patch.C PatchMap.C PatchMap.h PatchMgr.C PatchMgr.ci 
	PatchMgr.h PositionOwnerBox.h ProxyMgr.C ProxyMgr.ci 
	ProxyMgr.h ProxyPatch.C ReductionMgr.C ReductionMgr.ci 
	ReductionMgr.h SMD.C SMDMsgs.C SMDMsgs.h SimParameters.C 
	TestController.C WorkDistrib.C WorkDistrib.ci WorkDistrib.h 
	common.C common.h defmain.C main.C main.ci main.h 
Log Message:
Changes for new charm version



===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1010	Tue May 11 23:56:11 1999
   Repository revision:	1.1010	/Projects/r1/cvsroot/namd2/src/AtomMap.C,v

   Existing Tags:
	release-2-0-pre-charm-syn	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.1005	Tue May 11 23:56:12 1999
   Repository revision:	1.1005	/Projects/r1/cvsroot/namd2/src/BOCgroup.h,v

   Existing Tags:
	release-2-0-pre-charm-syn	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BroadcastMgr.C   	Status: Up-to-date

   Working revision:	1.10	Tue May 11 23:56:12 1999
   Repository revision:	1.10	/Projects/r1/cvsroot/namd2/src/BroadcastMgr.C,v

   Existing Tags:
	release-2-0-pre-charm-syn	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.2)

===================================================================
File: BroadcastMgr.ci  	Status: Up-to-date

   Working revision:	1.3	Tue May 11 23:56:13 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/BroadcastMgr.ci,v

   Existing Tags:
	release-2-0-pre-charm-syn	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: BroadcastMgr.h   	Status: Up-to-date

   Working revision:	1.10	Tue May 11 23:56:13 1999
   Repository revision:	1.10	/Projects/r1/cvsroot/namd2/src/BroadcastMgr.h,v

   Existing Tags:
	release-2-0-pre-charm-syn	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)

===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1017	Tue May 11 23:56:14 1999
   Repository revision:	1.1017	/Projects/r1/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-0-pre-charm-syn	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.ci	Status: Up-to-date

   Working revision:	1.1003	Tue May 11 23:56:14 1999
   Repository revision:	1.1003	/Projects/r1/cvsroot/namd2/src/CollectionMaster.ci,v

   Existing Tags:
	release-2-0-pre-charm-syn	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1014	Tue May 11 23:56:15 1999
   Repository revision:	1.1014	/Projects/r1/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-2-0-pre-charm-syn	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1014	Tue May 11 23:56:15 1999
   Repository revision:	1.1014	/Projects/r1/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	release-2-0-pre-charm-syn	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.ci 	Status: Up-to-date

   Working revision:	1.1003	Tue May 11 23:56:16 1999
   Repository revision:	1.1003	/Projects/r1/cvsroot/namd2/src/CollectionMgr.ci,v

   Existing Tags:
	release-2-0-pre-charm-syn	(revision: 1.1002)
	rel
****************************************
Date:	Friday May 14, 1999 @ 13:47
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	SimParameters.C SimParameters.h 
Log Message:
Split up huge functions into several smaller ones to help compilers.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1064	Fri May 14 18:47:25 1999
   Repository revision:	1.1064	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1034	Fri May 14 18:47:27 1999
   Repository revision:	1.1034	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday May 14, 1999 @ 16:32
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory oberon.ks.uiuc.edu:/tmp/jim/namd2/src

Modified Files:
	CollectionMaster.C CollectionMaster.h 
Log Message:
Fixed bugs which could stall output queue.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1018	Fri May 14 21:32:46 1999
   Repository revision:	1.1018	/Projects/r1/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1015	Fri May 14 21:32:47 1999
   Repository revision:	1.1015	/Projects/r1/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday May 19, 1999 @ 20:43
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory oberon.ks.uiuc.edu:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	dcdlib.C flipdcd.c 
Log Message:
Fixed major problems with DCD file format vs CHARMm.


===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.8	Thu May 20 01:43:27 1999
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)

===================================================================
File: flipdcd.c        	Status: Up-to-date

   Working revision:	1.2	Thu May 20 00:52:02 1999
   Repository revision:	1.2	/Projects/r1/cvsroot/namd2/src/flipdcd.c,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Monday May 24, 1999 @ 20:20
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	BroadcastMgr.h 
Log Message:
Fixed typo bug introduced with syntax changes.


===================================================================
File: BroadcastMgr.h   	Status: Up-to-date

   Working revision:	1.11	Tue May 25 01:20:52 1999
   Repository revision:	1.11	/Projects/r1/cvsroot/namd2/src/BroadcastMgr.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)


****************************************
Date:	Tuesday May 25, 1999 @ 16:48
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Output.C SimParameters.C dcdlib.C dcdlib.h 
Added Files:
	dumpdcd.c fixdcd.c loaddcd.c 
Log Message:
Modified DCD code to be compatible with Quanta.


===================================================================
File: dumpdcd.c        	Status: Up-to-date

   Working revision:	1.1	Mon May 24 22:09:47 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/dumpdcd.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fixdcd.c         	Status: Up-to-date

   Working revision:	1.1	Thu May 20 19:12:31 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/fixdcd.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: loaddcd.c        	Status: Up-to-date

   Working revision:	1.1	Mon May 24 22:09:37 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/loaddcd.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.19	Tue May 25 21:48:48 1999
   Repository revision:	1.19	/Projects/r1/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1065	Tue May 25 21:48:50 1999
   Repository revision:	1.1065	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.9	Tue May 25 21:48:51 1999
   Repository revision:	1.9	/Projects/r1/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)

===================================================================
File: dcdlib.h         	Status: Up-to-date

   Working revision:	1.3	Tue May 25 21:48:52 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/dcdlib.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday May 25, 1999 @ 16:50
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory istanbul:/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Makefile 
Log Message:
Added utilities to deal with DCD file formats.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1073	Mon May 24 22:24:25 1999
   Repository revision:	1.1073	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday May 26, 1999 @ 17:23
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	BroadcastObject.h Broadcasts.h Controller.C Node.C Node.ci 
	Node.h Sequencer.C SimParameters.C SimParameters.h Thread.h 
Log Message:
Added basic Tcl scripting, fixed bugs in broadcasts.


===================================================================
File: BroadcastObject.h	Status: Up-to-date

   Working revision:	1.5	Wed May 26 21:05:51 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/BroadcastObject.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.5	Wed May 26 22:23:53 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1067	Wed May 26 22:23:53 1999
   Repository revision:	1.1067	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1034	Wed May 26 22:23:54 1999
   Repository revision:	1.1034	/Projects/r1/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1008	Wed May 26 22:23:54 1999
   Repository revision:	1.1008	/Projects/r1/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1013	Wed May 26 22:23:55 1999
   Repository revision:	1.1013	/Projects/r1/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1060	Wed May 26 22:23:55 1999
   Repository revision:	1.1060	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1066	Wed May 26 22:23:55 1999
   Repository revision:	1.1066	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1035	Wed May 26 22:23:57 1999
   Repository revision:	1.1035	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Thread.h         	Status: Up-to-date

   Working revision:	1.5	Wed May 26 17:53:35 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/src/Thread.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)


****************************************
Date:	Wednesday May 26, 1999 @ 17:25
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory istanbul:/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added basic scripting.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.26	Wed May 26 22:24:17 1999
   Repository revision:	1.26	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1074	Wed May 26 17:46:38 1999
   Repository revision:	1.1074	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 27, 1999 @ 13:38
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Added Files:
	ScriptTcl.C ScriptTcl.h 
Log Message:
Files to implement general Tcl scripting.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.1	Thu May 27 18:38:58 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.1	Thu May 27 18:38:58 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday May 27, 1999 @ 14:00
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeDPME.C ComputeDPMTA.C ComputeFullDirectBase.h 
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h SimParameters.C SimParameters.h 
Log Message:
Added nonbondedScaling parameter and fixed Tcl scripting bug.


===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.12	Thu May 27 19:00:42 1999
   Repository revision:	1.12	/Projects/r1/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.10)
	release-2-0              	(revision: 1.10)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1056	Thu May 27 19:00:43 1999
   Repository revision:	1.1056	/Projects/r1/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1054)
	release-2-0              	(revision: 1.1053)
	release-2-0-beta-3       	(revision: 1.1053)
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirectBase.h	Status: Up-to-date

   Working revision:	1.3	Thu May 27 19:00:43 1999
   Repository revision:	1.3	/Projects/r1/cvsroot/namd2/src/ComputeFullDirectBase.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1044	Thu May 27 19:00:43 1999
   Repository revision:	1.1044	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1023	Thu May 27 19:00:44 1999
   Repository revision:	1.1023	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1018	Thu May 27 19:00:44 1999
   Repository revision:	1.1018	/Projects/r1/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1067	Thu May 27 19:00:45 1999
   Repository revision:	1.1067	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1036	Thu May 27 19:00:46 1999
   Repository revision:	1.1036	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 27, 1999 @ 14:02
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory oberon.ks.uiuc.edu:/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.depends 
Log Message:
Remade to include scripting.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.27	Thu May 27 19:01:32 1999
   Repository revision:	1.27	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Friday May 28, 1999 @ 15:23
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeRestraints.C SimParameters.C SimParameters.h 
Log Message:
Added constraintScaling parameter.


===================================================================
File: ComputeRestraints.C	Status: Up-to-date

   Working revision:	1.6	Fri May 28 20:22:58 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/src/ComputeRestraints.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1068	Fri May 28 20:23:01 1999
   Repository revision:	1.1068	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1037	Fri May 28 20:23:06 1999
   Repository revision:	1.1037	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday May 30, 1999 @ 15:06
Author:	brunner

Update of /Projects/r1/cvsroot/charm/pgms/simplearrayhello
In directory brutus:/tmp_mnt/Projects/r1/brunner/charm/net-linux-kcc/pgms/simplearrayhello

Revision/Branch: 1.1.1

Log Message:
New test program

Status:

Vendor Tag:	simplearrayhello
Release Tags:	start
		
N charm/pgms/simplearrayhello/Makefile
cvs: ERROR: cannot write file /Projects/r1/cvsroot/charm/pgms/simplearrayhello/Makefile,v: No such file or directory
N charm/pgms/simplearrayhello/hello.C
cvs: ERROR: cannot write file /Projects/r1/cvsroot/charm/pgms/simplearrayhello/hello.C,v: No such file or directory
N charm/pgms/simplearrayhello/hello.ci
cvs: ERROR: cannot write file /Projects/r1/cvsroot/charm/pgms/simplearrayhello/hello.ci,v: No such file or directory
N charm/pgms/simplearrayhello/hello.h
cvs: ERROR: cannot write file /Projects/r1/cvsroot/charm/pgms/simplearrayhello/hello.h,v: No such file or directory

No conflicts created by this import


[input file was '-']

****************************************
Date:	Wednesday June 2, 1999 @ 9:23
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Sequencer.C Sequencer.h SimParameters.C TestSequencer.C 
Log Message:
Generalized maximumMove to work with any dynamics mode.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1061	Wed Jun  2 14:23:21 1999
   Repository revision:	1.1061	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1023	Wed Jun  2 14:23:22 1999
   Repository revision:	1.1023	/Projects/r1/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1069	Wed Jun  2 14:23:22 1999
   Repository revision:	1.1069	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: TestSequencer.C  	Status: Up-to-date

   Working revision:	1.7	Wed Jun  2 14:23:23 1999
   Repository revision:	1.7	/Projects/r1/cvsroot/namd2/src/TestSequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Wednesday June 2, 1999 @ 10:14
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeDPME.C ComputeFreeEnergy.C Controller.C Controller.h 
	Namd.C Namd.h Node.C Node.ci Node.h Sequencer.C 
Log Message:
Now waits for output files to be written before halting.


===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.13	Wed Jun  2 15:14:19 1999
   Repository revision:	1.13	/Projects/r1/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.10)
	release-2-0              	(revision: 1.10)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.18	Wed Jun  2 15:14:19 1999
   Repository revision:	1.18	/Projects/r1/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.14)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.12)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1068	Wed Jun  2 15:14:19 1999
   Repository revision:	1.1068	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1022	Wed Jun  2 15:14:20 1999
   Repository revision:	1.1022	/Projects/r1/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.1012	Wed Jun  2 15:14:20 1999
   Repository revision:	1.1012	/Projects/r1/cvsroot/namd2/src/Namd.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.1013	Wed Jun  2 15:14:21 1999
   Repository revision:	1.1013	/Projects/r1/cvsroot/namd2/src/Namd.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1035	Wed Jun  2 15:14:21 1999
   Repository revision:	1.1035	/Projects/r1/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1009	Wed Jun  2 15:14:21 1999
   Repository revision:	1.1009	/Projects/r1/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1014	Wed Jun  2 15:14:21 1999
   Repository revision:	1.1014	/Projects/r1/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1062	Wed Jun  2 15:14:22 1999
   Repository revision:	1.1062	/Projects/r1/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday June 3, 1999 @ 11:50
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeGlobal.C Controller.C ReductionMgr.h SimParameters.C 
	SimParameters.h 
Added Files:
	ComputeGlobalEasy.C ComputeGlobalEasy.h ComputeMisc.C 
	ComputeMisc.h 
Log Message:
Added simplified interface to ComputeGlobal mechanism.


===================================================================
File: ComputeGlobalEasy.C	Status: Up-to-date

   Working revision:	1.1	Thu Jun  3 16:50:08 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeGlobalEasy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobalEasy.h	Status: Up-to-date

   Working revision:	1.1	Thu Jun  3 16:50:08 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeGlobalEasy.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMisc.C    	Status: Up-to-date

   Working revision:	1.1	Thu Jun  3 16:42:23 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeMisc.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMisc.h    	Status: Up-to-date

   Working revision:	1.1	Thu Jun  3 16:50:08 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputeMisc.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.13	Thu Jun  3 16:50:07 1999
   Repository revision:	1.13	/Projects/r1/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1069	Thu Jun  3 16:50:08 1999
   Repository revision:	1.1069	/Projects/r1/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1016	Thu Jun  3 16:50:09 1999
   Repository revision:	1.1016	/Projects/r1/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1070	Thu Jun  3 16:50:09 1999
   Repository revision:	1.1070	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1038	Thu Jun  3 16:50:11 1999
   Repository revision:	1.1038	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday June 3, 1999 @ 11:50
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory istanbul:/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Makefile Make.depends 
Log Message:
Added simplified interface to ComputeGlobal mechanism.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1075	Thu Jun  3 16:25:41 1999
   Repository revision:	1.1075	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.28	Thu Jun  3 16:29:04 1999
   Repository revision:	1.28	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Thursday June 3, 1999 @ 11:53
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/arch

Modified Files:
	Makearch.Origin2000 
Log Message:
Eliminated long compiler paths.


===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.18	Wed Jun  2 20:59:19 1999
   Repository revision:	1.18	/Projects/r1/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.15)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Thursday June 3, 1999 @ 16:47
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory istanbul:/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.charm 
Log Message:
Returned to normal path.


===================================================================
File: Make.charm       	Status: Up-to-date

   Working revision:	1.5	Mon May 24 22:21:27 1999
   Repository revision:	1.5	/Projects/r1/cvsroot/namd2/Make.charm,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Friday June 4, 1999 @ 9:09
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	NamdOneTools.C 
Log Message:
Eliminated use of bzero().


===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.18	Fri Jun  4 14:09:08 1999
   Repository revision:	1.18	/Projects/r1/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.16)
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)


****************************************
Date:	Friday June 4, 1999 @ 10:28
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/arch

Added Files:
	Makearch.g++-alpha 
Log Message:
Compiles on alpha.


===================================================================
File: Makearch.g++-alpha	Status: Up-to-date

   Working revision:	1.1	Fri Jun  4 14:41:51 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/arch/Makearch.g++-alpha,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday June 8, 1999 @ 9:51
Author:	jim

Update of /Projects/r1/cvsroot/namd2
In directory istanbul:/Projects/namd2/Programmers/jim/justin/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Incorporated Justin's faster PME code along side DPME.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.29	Tue Jun  8 14:16:40 1999
   Repository revision:	1.29	/Projects/r1/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1076	Tue Jun  8 00:27:58 1999
   Repository revision:	1.1076	/Projects/r1/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday June 8, 1999 @ 9:51
Author:	jim

Update of /Projects/r1/cvsroot/namd2/arch
In directory istanbul:/Projects/namd2/Programmers/jim/justin/namd2/arch

Modified Files:
	Makearch.KCC-i486 Makearch.g++-i486 
Log Message:
Incorporated Justin's faster PME code along side DPME.


===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.8	Tue Jun  8 01:01:12 1999
   Repository revision:	1.8	/Projects/r1/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: Makearch.g++-i486	Status: Up-to-date

   Working revision:	1.4	Tue Jun  8 00:35:28 1999
   Repository revision:	1.4	/Projects/r1/cvsroot/namd2/arch/Makearch.g++-i486,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)


****************************************
Date:	Tuesday June 8, 1999 @ 9:52
Author:	jim

Update of /Projects/r1/cvsroot/namd2/dpme2
In directory istanbul:/Projects/namd2/Programmers/jim/justin/namd2/dpme2

Modified Files:
	dpme2def.h 
Log Message:
Incorporated Justin's faster PME code along side DPME.


===================================================================
File: dpme2def.h       	Status: Up-to-date

   Working revision:	1.6	Mon Jun  7 23:22:58 1999
   Repository revision:	1.6	/Projects/r1/cvsroot/namd2/dpme2/dpme2def.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.3)


****************************************
Date:	Tuesday June 8, 1999 @ 9:52
Author:	jim

Update of /Projects/r1/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/justin/namd2/src

Modified Files:
	ComputeMap.h ComputeMgr.C ComputeMgr.ci ComputeMgr.h 
	SimParameters.C SimParameters.h WorkDistrib.C 
Added Files:
	ComputePme.C ComputePme.h ComputePmeMsgs.C ComputePmeMsgs.h 
	PmeBase.C PmeBase.h PmeCoulomb.C PmeCoulomb.h PmeFFT.C 
	PmeFFT.h PmeKSpace.C PmeKSpace.h PmeRealSpace.C PmeRealSpace.h 
Log Message:
Incorporated Justin's faster PME code along side DPME.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.1	Tue Jun  8 14:52:06 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.1	Tue Jun  8 14:52:07 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputePmeMsgs.C 	Status: Up-to-date

   Working revision:	1.1	Tue Jun  8 14:52:07 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputePmeMsgs.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputePmeMsgs.h 	Status: Up-to-date

   Working revision:	1.1	Tue Jun  8 14:52:07 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/ComputePmeMsgs.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeBase.C        	Status: Up-to-date

   Working revision:	1.1	Tue Jun  8 00:39:11 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/PmeBase.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeBase.h        	Status: Up-to-date

   Working revision:	1.1	Tue Jun  8 00:39:11 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/PmeBase.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeCoulomb.C     	Status: Up-to-date

   Working revision:	1.1	Tue Jun  8 00:39:11 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/PmeCoulomb.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeCoulomb.h     	Status: Up-to-date

   Working revision:	1.1	Tue Jun  8 00:39:11 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/PmeCoulomb.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeFFT.C         	Status: Up-to-date

   Working revision:	1.1	Tue Jun  8 14:20:51 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/PmeFFT.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeFFT.h         	Status: Up-to-date

   Working revision:	1.1	Tue Jun  8 00:39:11 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/PmeFFT.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeKSpace.C      	Status: Up-to-date

   Working revision:	1.1	Tue Jun  8 00:39:11 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/PmeKSpace.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeKSpace.h      	Status: Up-to-date

   Working revision:	1.1	Tue Jun  8 00:39:11 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/PmeKSpace.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeRealSpace.C   	Status: Up-to-date

   Working revision:	1.1	Tue Jun  8 00:39:11 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/PmeRealSpace.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeRealSpace.h   	Status: Up-to-date

   Working revision:	1.1	Tue Jun  8 00:39:11 1999
   Repository revision:	1.1	/Projects/r1/cvsroot/namd2/src/PmeRealSpace.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1017	Tue Jun  8 14:52:05 1999
   Repository revision:	1.1017	/Projects/r1/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1028	Tue Jun  8 14:52:06 1999
   Repository revision:	1.1028	/Projects/r1/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.ci    	Status: Up-to-date

   Working revision:	1.1007	Tue Jun  8 14:52:06 1999
   Repository revision:	1.1007	/Projects/r1/cvsroot/namd2/src/ComputeMgr.ci,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1016	Tue Jun  8 14:52:06 1999
   Repository revision:	1.1016	/Projects/r1/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1013)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1071	Tue Jun  8 14:52:08 1999
   Repository revision:	1.1071	/Projects/r1/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1039	Tue Jun  8 14:52:10 1999
   Repository revision:	1.1039	/Projects/r1/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1067	Tue Jun  8 14:52:10 1999
   Repository revision:	1.1067	/Projects/r1/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday June 9, 1999 @ 10:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Added nonbondedScaling parameter.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.2	Wed Jun  9 15:02:07 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday June 11, 1999 @ 15:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory istanbul:/Projects/namd2/Programmers/jim/namd2

Modified Files:
	Make.depends 
Log Message:
Got rid of fftw dependency.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.30	Fri Jun 11 20:42:31 1999
   Repository revision:	1.30	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Friday June 11, 1999 @ 15:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	PmeFFT.h 
Log Message:
Got rid of fftw dependency.


===================================================================
File: PmeFFT.h         	Status: Up-to-date

   Working revision:	1.2	Fri Jun 11 20:40:14 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/PmeFFT.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday June 17, 1999 @ 10:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeAngles.C ComputeAngles.h ComputeBonds.C ComputeBonds.h 
	ComputeCylindricalBC.C ComputeCylindricalBC.h ComputeDPME.C 
	ComputeDPMTA.C ComputeDPMTA.h ComputeDihedrals.C 
	ComputeDihedrals.h ComputeFullDirect.C ComputeFullDirect.h 
	ComputeGlobalEasy.C ComputeGlobalEasy.h ComputeHomePatches.C 
	ComputeHomePatches.h ComputeHomeTuples.h ComputeImpropers.C 
	ComputeImpropers.h ComputeNonbondedPair.C 
	ComputeNonbondedPair.h ComputeNonbondedSelf.C 
	ComputeNonbondedSelf.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h ComputePme.C ComputeRestraints.C 
	ComputeRestraints.h ComputeSMD.C ComputeSMD.h 
	ComputeSphericalBC.C ComputeSphericalBC.h Controller.C 
	Controller.h ReductionMgr.C ReductionMgr.ci ReductionMgr.h 
	Sequencer.C Sequencer.h 
Log Message:
Completely rewrote reduction system to eliminate need for sequence numbers.


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1011	Thu Jun 17 15:45:59 1999
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1009	Thu Jun 17 15:46:00 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1010	Thu Jun 17 15:46:01 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1007	Thu Jun 17 15:46:01 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeCylindricalBC.C	Status: Up-to-date

   Working revision:	1.7	Thu Jun 17 15:46:01 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputeCylindricalBC.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)

===================================================================
File: ComputeCylindricalBC.h	Status: Up-to-date

   Working revision:	1.6	Thu Jun 17 15:46:02 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeCylindricalBC.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.5)
	development-4            	(revision: 1.5)

===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.14	Thu Jun 17 15:46:02 1999
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.10)
	release-2-0              	(revision: 1.10)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1057	Thu Jun 17 15:46:03 1999
   Repository revision:	1.1057	/Projects/namd2/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1054)
	release-2-0              	(revision: 1.1053)
	release-2-0-beta-3       	(revision: 1.1053)
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1019	Thu Jun 17 15:46:04 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1017)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1012	Thu Jun 17 15:46:04 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1006	Thu Jun 17 15:46:05 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1021	Thu Jun 17 15:46:05 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1012)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirect.h	Status: Up-to-date

   Working revision:	1.1003	Thu Jun 17 15:46:06 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirect.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeGlobalEasy.C	Status: Up-to-date

   Working revision:	1.2	Thu Jun 17 15:46:06 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalEasy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobalEasy.h	Status: Up-to-date

   Working revision:	1.2	Thu Jun 17 15:46:07 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalEasy.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.1006	Thu Jun 17 15:46:07 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatches.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.1005	Thu Jun 17 15:46:07 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatches.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1018	Wed Jun 16 18:39:41 1999
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1011	Thu Jun 17 15:46:08 1999
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1006	Thu Jun 17 15:46:09 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1018	Thu Jun 17 15:46:09 1999
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1008	Thu Jun 17 15:46:10 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1013	Thu Jun 17 15:46:10 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.1007	Thu Jun 17 15:46:10 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1024	Thu Jun 17 15:46:11 1999
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1019	Thu Jun 17 15:46:11 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.3	Thu Jun 17 15:46:12 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeRestraints.C	Status: Up-to-date

   Working revision:	1.7	Thu Jun 17 15:46:13 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputeRestraints.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeRestraints.h	Status: Up-to-date

   Working revision:	1.5	Thu Jun 17 15:46:13 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeRestraints.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.3	Wed Jun 16 19:45:08 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeSMD.h     	Status: Up-to-date

   Working revision:	1.2	Wed Jun 16 19:45:31 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeSphericalBC.C	Status: Up-to-date

   Working revision:	1.2	Wed Jun 16 19:10:16 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeSphericalBC.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeSphericalBC.h	Status: Up-to-date

   Working revision:	1.2	Wed Jun 16 19:10:34 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeSphericalBC.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1070	Thu Jun 17 15:46:14 1999
   Repository revision:	1.1070	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1023	Thu Jun 17 15:46:16 1999
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1033	Thu Jun 17 15:46:16 1999
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1031)
	release-2-0              	(revision: 1.1030)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1026)
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.ci  	Status: Up-to-date

   Working revision:	1.1005	Thu Jun 17 15:46:17 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.ci,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1017	Thu Jun 17 15:46:18 1999
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1063	Thu Jun 17 15:46:18 1999
   Repository revision:	1.1063	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1024	Thu Jun 17 15:46:20 1999
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday June 17, 1999 @ 11:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ReductionMgr.C 
Log Message:
Added error checking for barrier violations.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1034	Thu Jun 17 16:02:54 1999
   Repository revision:	1.1034	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1031)
	release-2-0              	(revision: 1.1030)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1026)
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday June 17, 1999 @ 12:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ComputeAngles.C ComputeAngles.h ComputeBonds.C ComputeBonds.h 
	ComputeDPME.C ComputeDPMTA.C ComputeDihedrals.C 
	ComputeDihedrals.h ComputeGlobalEasy.C ComputeGlobalEasy.h 
	ComputeHomeTuples.h ComputeImpropers.C ComputeImpropers.h 
	ComputeNonbondedPair.C ComputeNonbondedSelf.C 
	ComputeNonbondedUtil.C ComputeNonbondedUtil.h ComputePatch.C 
	ComputePatchPair.C ComputePme.C ComputeRestraints.C 
	ComputeSMD.C Controller.C PatchTypes.h Sequencer.C 
	TestSequencer.C 
Log Message:
Renamed seq to step in most places.  Now has meaning only to user.


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1012	Thu Jun 17 17:05:33 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1010	Thu Jun 17 17:05:34 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1011	Thu Jun 17 17:05:34 1999
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1008	Thu Jun 17 17:05:35 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.15	Thu Jun 17 17:05:35 1999
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.10)
	release-2-0              	(revision: 1.10)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1058	Thu Jun 17 17:05:36 1999
   Repository revision:	1.1058	/Projects/namd2/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1054)
	release-2-0              	(revision: 1.1053)
	release-2-0-beta-3       	(revision: 1.1053)
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1013	Thu Jun 17 17:05:37 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1007	Thu Jun 17 17:05:37 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGlobalEasy.C	Status: Up-to-date

   Working revision:	1.3	Thu Jun 17 17:05:38 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalEasy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobalEasy.h	Status: Up-to-date

   Working revision:	1.3	Thu Jun 17 17:05:38 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalEasy.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1019	Thu Jun 17 16:39:26 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1012	Thu Jun 17 17:05:39 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1007	Thu Jun 17 17:05:39 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1019	Thu Jun 17 17:05:40 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1014	Thu Jun 17 17:05:40 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1025	Thu Jun 17 17:05:41 1999
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1020	Thu Jun 17 17:05:42 1999
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1014	Thu Jun 17 17:05:42 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1017	Thu Jun 17 17:05:43 1999
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.4	Thu Jun 17 17:05:43 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeRestraints.C	Status: Up-to-date

   Working revision:	1.8	Thu Jun 17 17:05:44 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ComputeRestraints.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.4	Thu Jun 17 16:49:44 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1071	Thu Jun 17 17:05:44 1999
   Repository revision:	1.1071	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.10	Thu Jun 17 17:05:46 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.8)
	development-4            	(revision: 1.8)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1064	Thu Jun 17 17:05:46 1999
   Repository revision:	1.1064	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: TestSequencer.C  	Status: Up-to-date

   Working revision:	1.8	Thu Jun 17 17:05:48 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/TestSequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Thursday June 17, 1999 @ 13:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	PmeCoulomb.C 
Log Message:
Dies gracefully if third grid dimension is odd.


===================================================================
File: PmeCoulomb.C     	Status: Up-to-date

   Working revision:	1.2	Thu Jun 17 18:09:43 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/PmeCoulomb.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday June 17, 1999 @ 14:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	SimParameters.C SimParameters.h 
Log Message:
SimParameters is now sent by bit-copy rather than by member.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1072	Thu Jun 17 19:03:44 1999
   Repository revision:	1.1072	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1040	Thu Jun 17 19:03:48 1999
   Repository revision:	1.1040	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday June 18, 1999 @ 12:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	ReductionMgr.C ReductionMgr.ci 
Log Message:
Full dynamics allocation and varsize messages for ReductionMgr.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1035	Fri Jun 18 17:04:13 1999
   Repository revision:	1.1035	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1031)
	release-2-0              	(revision: 1.1030)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1026)
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.ci  	Status: Up-to-date

   Working revision:	1.1006	Fri Jun 18 17:04:14 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.ci,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday June 18, 1999 @ 13:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Parameters.C 
Log Message:
Fixed bug in xplor-style hbond reading.


===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1012	Fri Jun 18 18:34:47 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday June 21, 1999 @ 11:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul:/Projects/namd2/Programmers/jim/namd2/src

Modified Files:
	Controller.C Output.C ScriptTcl.C ScriptTcl.h Sequencer.C 
	SimParameters.C 
Log Message:
Improved scripting, run now ends and generates output.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1072	Mon Jun 21 16:15:31 1999
   Repository revision:	1.1072	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.20	Mon Jun 21 16:15:33 1999
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.2	Mon Jun 21 16:15:36 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.2	Mon Jun 21 16:15:36 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1065	Mon Jun 21 16:15:36 1999
   Repository revision:	1.1065	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1073	Mon Jun 21 16:15:38 1999
   Repository revision:	1.1073	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday June 28, 1999 @ 14:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	FreeEnergyAssert.C FreeEnergyAssert.h 
Log Message:
Fixed assert.


===================================================================
File: FreeEnergyAssert.C	Status: Up-to-date

   Working revision:	1.2	Mon Jun 28 19:41:18 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/FreeEnergyAssert.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: FreeEnergyAssert.h	Status: Up-to-date

   Working revision:	1.2	Mon Jun 28 19:41:26 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/FreeEnergyAssert.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Monday June 28, 1999 @ 14:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputeTcl.C TclCommands.C TclCommands.h 
Log Message:
Eliminated tclx.


===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.11	Mon Jun 28 19:49:57 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: TclCommands.C    	Status: Up-to-date

   Working revision:	1.5	Mon Jun 28 19:49:57 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/TclCommands.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: TclCommands.h    	Status: Up-to-date

   Working revision:	1.3	Mon Jun 28 19:49:58 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/TclCommands.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Tuesday June 29, 1999 @ 15:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/arch

Modified Files:
	Makearch.HPUX10 Makearch.KCC-i486 Makearch.Origin2000 
	Makearch.Solaris Makearch.g++-alpha 
Log Message:
Added TCL and FFTW to all local builds.


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.18	Thu Jun 24 21:02:54 1999
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.3)

===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.9	Thu Jun 24 20:57:52 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.19	Thu Jun 24 21:00:20 1999
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.15)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.13	Thu Jun 24 20:58:35 1999
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.12)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.g++-alpha	Status: Up-to-date

   Working revision:	1.2	Thu Jun 24 21:05:28 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Makearch.g++-alpha,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday July 1, 1999 @ 15:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory oberon.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/arch

Modified Files:
	Makearch.g++-i486 
Log Message:
Updated FFTW and TCL directories.


===================================================================
File: Makearch.g++-i486	Status: Up-to-date

   Working revision:	1.5	Thu Jul  1 19:11:03 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Makearch.g++-i486,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)


****************************************
Date:	Thursday July 1, 1999 @ 15:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory oberon.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Now builds inc and obj directories when needed.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.31	Thu Jul  1 20:47:20 1999
   Repository revision:	1.31	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1077	Thu Jul  1 19:38:20 1999
   Repository revision:	1.1077	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 1, 1999 @ 16:00
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/arch
In directory asuncion.ks.uiuc.edu:/Projects/r1/brunner/NAMD/namd2/arch

Modified Files:
	Makearch.Solaris 
Log Message:
TCL needs -ldl library


===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.14	Thu Jul  1 20:59:26 1999
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.12)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Thursday July 1, 1999 @ 16:01
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory asuncion.ks.uiuc.edu:/Projects/r1/brunner/NAMD/namd2/src

Modified Files:
	ParseOptions.C common.C common.h 
Log Message:
Removed definitions for default new() for Sun, and got rid of libc.h


===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1010	Thu Jul  1 21:01:20 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1019	Thu Jul  1 21:01:21 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1020	Thu Jul  1 21:01:21 1999
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday July 2, 1999 @ 15:44
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/arch
In directory brutus:/tmp_mnt/Projects/r1/brunner/NAMD/namd2/arch

Modified Files:
	Makearch.Origin2000 
Log Message:
Offensive warning message turned off


===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.20	Fri Jul  2 20:35:46 1999
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.15)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Friday July 2, 1999 @ 17:07
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Makefile Make.depends 
Log Message:
Undid attempt to create inc and obj dirs.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1078	Fri Jul  2 22:01:03 1999
   Repository revision:	1.1078	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.32	Fri Jul  2 21:52:09 1999
   Repository revision:	1.32	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Tuesday July 6, 1999 @ 15:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	CollectionMaster.C CollectionMaster.h CollectionMgr.h 
	ComputeGlobalEasy.h ComputeMgr.h ComputeMisc.h Controller.C 
	Inform.C Inform.h Sequencer.C common.C common.h 
Log Message:
Eliminated warnings from new generation of picky compilers.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1019	Tue Jul  6 20:32:39 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1016	Tue Jul  6 20:32:40 1999
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1011	Tue Jul  6 20:32:40 1999
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGlobalEasy.h	Status: Up-to-date

   Working revision:	1.4	Tue Jul  6 20:32:41 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalEasy.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1017	Tue Jul  6 20:32:41 1999
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1013)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMisc.h    	Status: Up-to-date

   Working revision:	1.2	Tue Jul  6 20:32:41 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeMisc.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1073	Tue Jul  6 20:32:42 1999
   Repository revision:	1.1073	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Inform.C         	Status: Up-to-date

   Working revision:	1.1005	Tue Jul  6 20:32:43 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/Inform.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Inform.h         	Status: Up-to-date

   Working revision:	1.1002	Tue Jul  6 20:32:44 1999
   Repository revision:	1.1002	/Projects/namd2/cvsroot/namd2/src/Inform.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1066	Tue Jul  6 20:32:44 1999
   Repository revision:	1.1066	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1020	Tue Jul  6 20:32:46 1999
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1021	Tue Jul  6 20:32:46 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 8, 1999 @ 16:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputeHomePatches.h ComputeHomeTuples.h ComputeMisc.C 
	ComputeSMD.C ConfigList.h Controller.C Controller.h 
	FreeEnergyParse.C FreeEnergyParse.h HomePatch.C HomePatch.h 
	NamdState.C NamdState.h ParseOptions.C Rebalancer.h 
	Sequencer.C Sequencer.h UniqueSetIter.h strlib.C strlib.h 
Log Message:
Eliminated compiler warnings.


===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.1006	Thu Jul  8 21:26:34 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatches.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1020	Wed Jul  7 14:45:16 1999
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMisc.C    	Status: Up-to-date

   Working revision:	1.2	Wed Jul  7 14:56:35 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeMisc.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.5	Wed Jul  7 15:02:28 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ConfigList.h     	Status: Up-to-date

   Working revision:	1.1002	Thu Jul  8 21:26:38 1999
   Repository revision:	1.1002	/Projects/namd2/cvsroot/namd2/src/ConfigList.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1074	Thu Jul  8 21:26:39 1999
   Repository revision:	1.1074	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1024	Thu Jul  8 21:26:43 1999
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: FreeEnergyParse.C	Status: Up-to-date

   Working revision:	1.6	Thu Jul  8 21:26:44 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/FreeEnergyParse.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyParse.h	Status: Up-to-date

   Working revision:	1.2	Wed Jul  7 15:11:09 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/FreeEnergyParse.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1053	Thu Jul  8 21:26:48 1999
   Repository revision:	1.1053	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1019	Thu Jul  8 21:26:52 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1019	Thu Jul  8 21:26:54 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1009	Thu Jul  8 21:26:55 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1011	Thu Jul  8 21:26:57 1999
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Rebalancer.h     	Status: Up-to-date

   Working revision:	1.4	Wed Jul  7 14:37:18 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/Rebalancer.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1067	Thu Jul  8 21:27:02 1999
   Repository revision:	1.1067	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1025	Thu Jul  8 21:27:06 1999
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: UniqueSetIter.h  	Status: Up-to-date

   Working revision:	1.2	Wed Jul  7 14:41:55 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/UniqueSetIter.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: strlib.C         	Status: Up-to-date

   Working revision:	1.1004	Thu Jul  8 21:27:08 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/strlib.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: strlib.h         	Status: Up-to-date

   Working revision:	1.1004	Thu Jul  8 21:27:10 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/strlib.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 8, 1999 @ 17:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet.ks.uiuc.edu:/tmp/cvs-serv477

Modified Files:
	common.h 
Log Message:
Eliminated rint definition from fp.h on T3E.


===================================================================
File: no file common.h		Status: Needs Checkout

   Working revision:	1.1022	Thu Jul  8 22:08:08 1999
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday July 9, 1999 @ 16:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/namd2_threads/src

Modified Files:
	PDBData.C PDBData.h 
Log Message:
Eliminated compiler warnings.


===================================================================
File: PDBData.C        	Status: Up-to-date

   Working revision:	1.1006	Fri Jul  9 21:05:49 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/PDBData.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.h        	Status: Up-to-date

   Working revision:	1.1003	Fri Jul  9 21:05:50 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/PDBData.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 13, 1999 @ 14:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	WorkDistrib.C 
Added Files:
	Random.h 
Log Message:
Implemented new self contained version of rand48 random number generator.


===================================================================
File: Random.h         	Status: Up-to-date

   Working revision:	1.1	Tue Jul 13 18:52:52 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/Random.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1068	Tue Jul 13 19:21:05 1999
   Repository revision:	1.1068	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 21, 1999 @ 18:28
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet.ks.uiuc.edu:/tmp/cvs-serv5324

Modified Files:
	Random.h 
Log Message:
changed Random.h a litle, to eleiminate 
mulitiple declarations in for loop, like
for ( int i ... )


===================================================================
File: Random.h         	Status: Up-to-date

   Working revision:	1.2	Wed Jul 21 23:28:44 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Random.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday July 22, 1999 @ 10:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Make.depends 
Log Message:
Remade with new Random.h.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.33	Tue Jul 13 21:21:05 1999
   Repository revision:	1.33	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Thursday July 22, 1999 @ 10:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C Controller.h NamdOneTools.C NamdOneTools.h 
	Random.h SMD.C SMD.h Sequencer.C Sequencer.h WorkDistrib.C 
	common.C common.h 
Log Message:
Eliminated last remnants of non-reentrant rand48 calls.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1075	Thu Jul 22 15:39:41 1999
   Repository revision:	1.1075	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1025	Thu Jul 22 15:39:42 1999
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.19	Thu Jul 22 15:39:43 1999
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.16)
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)

===================================================================
File: NamdOneTools.h   	Status: Up-to-date

   Working revision:	1.5	Thu Jul 22 15:39:44 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/NamdOneTools.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: Random.h         	Status: Up-to-date

   Working revision:	1.3	Thu Jul 22 15:32:23 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/Random.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SMD.C            	Status: Up-to-date

   Working revision:	1.11	Tue Jul 13 21:19:03 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/SMD.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: SMD.h            	Status: Up-to-date

   Working revision:	1.4	Tue Jul 13 21:18:11 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/SMD.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1068	Thu Jul 22 15:39:45 1999
   Repository revision:	1.1068	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1026	Thu Jul 22 15:39:46 1999
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1069	Thu Jul 22 15:39:47 1999
   Repository revision:	1.1069	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1021	Thu Jul 22 15:39:49 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1023	Thu Jul 22 15:39:50 1999
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 22, 1999 @ 16:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
Fixed virial calculation during RATTLE.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1054	Thu Jul 22 21:43:06 1999
   Repository revision:	1.1054	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 4, 1999 @ 15:42
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	PDB.C PDBData.C 
Log Message:
Eliminated seg fault for binary pdb file read in as text.


===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1008	Wed Aug  4 20:42:31 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.C        	Status: Up-to-date

   Working revision:	1.1007	Wed Aug  4 20:42:32 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/PDBData.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 11, 1999 @ 11:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C Sequencer.C 
Log Message:
Turned on printing of atomic pressure with RATTLE.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1076	Wed Aug 11 16:49:19 1999
   Repository revision:	1.1076	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1069	Wed Aug 11 16:49:22 1999
   Repository revision:	1.1069	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 11, 1999 @ 11:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	PatchMap.C PatchMap.h 
Log Message:
Make homePatch() method return NULL for proxies rather than casting.


===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1021	Wed Aug 11 16:52:21 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1013	Wed Aug 11 16:52:23 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 11, 1999 @ 11:53
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	PatchMgr.C PatchMgr.ci PatchMgr.h ScriptTcl.C ScriptTcl.h 
	SimParameters.C 
Log Message:
Added move command to TCL scripting.


===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1018	Wed Aug 11 16:53:07 1999
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.ci      	Status: Up-to-date

   Working revision:	1.1006	Wed Aug 11 16:53:09 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/PatchMgr.ci,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1013	Wed Aug 11 16:53:09 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.3	Wed Aug 11 16:53:10 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.3	Wed Aug 11 16:53:11 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1074	Wed Aug 11 16:53:12 1999
   Repository revision:	1.1074	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 11, 1999 @ 14:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Now kills unstable simulations with sensible error message.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1070	Wed Aug 11 19:32:19 1999
   Repository revision:	1.1070	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 13, 1999 @ 17:57
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory oberon.ks.uiuc.edu:/Projects/brunner/NAMD/namd2/src

Modified Files:
	Controller.C Node.C 
Added Files:
	ccsinterface.C ccsinterface.h 
Log Message:
Added ccs files.  They are all currently disabled by ifdef NAMDCCS



===================================================================
File: ccsinterface.C   	Status: Up-to-date

   Working revision:	1.1	Fri Aug 13 20:36:30 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ccsinterface.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ccsinterface.h   	Status: Up-to-date

   Working revision:	1.1	Fri Aug 13 20:36:47 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ccsinterface.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1077	Fri Aug 13 22:57:00 1999
   Repository revision:	1.1077	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1036	Fri Aug 13 22:57:01 1999
   Repository revision:	1.1036	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 16, 1999 @ 16:23
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2
In directory naiad.ks.uiuc.edu:/tmp_mnt/Projects/brunner/NAMD/namd2

Modified Files:
	Makefile 
Log Message:
Added ccs interface file


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1079	Fri Aug 13 20:35:14 1999
   Repository revision:	1.1079	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 16, 1999 @ 16:55
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/arch
In directory naiad.ks.uiuc.edu:/tmp_mnt/Projects/brunner/NAMD/namd2/arch

Added Files:
	Makearch.alpha 
Log Message:
Version for alpha w/ DEC compiler



===================================================================
File: Makearch.alpha   	Status: Up-to-date

   Working revision:	1.1	Mon Aug 16 21:32:26 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Makearch.alpha,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday August 16, 1999 @ 16:55
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2
In directory naiad.ks.uiuc.edu:/tmp_mnt/Projects/brunner/NAMD/namd2

Modified Files:
	Make.depends 
Log Message:
Added CCS interface file, but it is ifdef'd out



===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.34	Mon Aug 16 21:39:42 1999
   Repository revision:	1.34	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Monday August 16, 1999 @ 17:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/interactive/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Incorporated Justin's interactive MD code.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.35	Mon Aug 16 22:05:02 1999
   Repository revision:	1.35	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1080	Mon Aug 16 21:58:40 1999
   Repository revision:	1.1080	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 16, 1999 @ 17:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory istanbul.ks.uiuc.edu:/Projects/namd2/Programmers/jim/interactive/namd2/src

Modified Files:
	ComputeGlobal.C Molecule.C Node.C Node.h Output.C 
	SimParameters.C SimParameters.h 
Added Files:
	ComputeIMD.C ComputeIMD.h IMDOutput.C IMDOutput.h imd.C imd.h 
	vmdsock.C vmdsock.h 
Log Message:
Incorporated Justin's interactive MD code.


===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.1	Mon Aug 16 20:07:21 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeIMD.h     	Status: Up-to-date

   Working revision:	1.1	Mon Aug 16 20:07:21 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: IMDOutput.C      	Status: Up-to-date

   Working revision:	1.1	Mon Aug 16 20:07:29 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/IMDOutput.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: IMDOutput.h      	Status: Up-to-date

   Working revision:	1.1	Mon Aug 16 20:07:29 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/IMDOutput.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: imd.C            	Status: Up-to-date

   Working revision:	1.1	Mon Aug 16 21:18:09 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/imd.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: imd.h            	Status: Up-to-date

   Working revision:	1.1	Mon Aug 16 20:28:50 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/imd.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: vmdsock.C        	Status: Up-to-date

   Working revision:	1.1	Mon Aug 16 21:10:13 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/vmdsock.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: vmdsock.h        	Status: Up-to-date

   Working revision:	1.1	Mon Aug 16 20:29:27 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/vmdsock.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.14	Mon Aug 16 22:19:08 1999
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1036	Mon Aug 16 22:19:17 1999
   Repository revision:	1.1036	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1037	Mon Aug 16 22:19:35 1999
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1015	Mon Aug 16 22:19:38 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.21	Mon Aug 16 22:19:40 1999
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1075	Mon Aug 16 22:19:43 1999
   Repository revision:	1.1075	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1041	Mon Aug 16 22:19:48 1999
   Repository revision:	1.1041	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 20, 1999 @ 14:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/molly/namd2/src

Modified Files:
	ComputeDPME.C ComputeDPMTA.C ComputeFullDirect.C 
	ComputeHomePatches.C ComputeHomePatches.h ComputeHomeTuples.h 
	ComputeNonbondedBase.h ComputeNonbondedExcl.C 
	ComputeNonbondedPair.C ComputeNonbondedPair.h 
	ComputeNonbondedSelf.C ComputeNonbondedSelf.h 
	ComputeNonbondedUtil.C ComputeNonbondedUtil.h ComputePme.C 
	Controller.C HomePatch.C HomePatch.h Molecule.C Molecule.h 
	Patch.C Patch.h PatchTypes.h ProxyMgr.C ProxyMgr.h 
	ProxyPatch.C ReductionMgr.h Sequencer.C SimParameters.C 
	SimParameters.h 
Log Message:
Added MOLLY - mollified impluse method.


===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.16	Fri Aug 20 19:11:07 1999
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.10)
	release-2-0              	(revision: 1.10)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1059	Fri Aug 20 19:11:07 1999
   Repository revision:	1.1059	/Projects/namd2/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1054)
	release-2-0              	(revision: 1.1053)
	release-2-0-beta-3       	(revision: 1.1053)
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1022	Fri Aug 20 19:11:08 1999
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1012)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.1007	Fri Aug 20 19:11:08 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatches.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.1007	Fri Aug 20 19:11:08 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatches.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1021	Wed Jul 28 16:20:32 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1045	Fri Aug 20 19:11:09 1999
   Repository revision:	1.1045	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1023	Fri Aug 20 19:11:09 1999
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1021)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1021)
	release-alpha-1          	(revision: 1.1019)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1020	Fri Aug 20 19:11:09 1999
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1009	Fri Aug 20 19:11:10 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1015	Fri Aug 20 19:11:10 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.1008	Fri Aug 20 19:11:10 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1026	Fri Aug 20 19:11:10 1999
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1021	Fri Aug 20 19:11:11 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.5	Fri Aug 20 19:11:11 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1078	Fri Aug 20 19:11:11 1999
   Repository revision:	1.1078	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1055	Fri Aug 20 19:11:11 1999
   Repository revision:	1.1055	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1020	Fri Aug 20 19:11:12 1999
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1036	Fri Aug 20 19:11:12 1999
   Repository revision:	1.1036	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1026	Fri Aug 20 19:11:13 1999
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1027	Fri Aug 20 19:11:13 1999
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1025)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1013	Fri Aug 20 19:11:13 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1012)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.11	Fri Aug 20 19:11:13 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.8)
	development-4            	(revision: 1.8)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1025	Fri Aug 20 19:11:14 1999
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1023)
	release-2-0              	(revision: 1.1023)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1023)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1012	Fri Aug 20 19:11:14 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1021	Fri Aug 20 19:11:14 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1018	Fri Aug 20 19:11:14 1999
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1071	Fri Aug 20 19:11:15 1999
   Repository revision:	1.1071	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1076	Fri Aug 20 19:11:15 1999
   Repository revision:	1.1076	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1042	Fri Aug 20 19:11:15 1999
   Repository revision:	1.1042	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 20, 1999 @ 16:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/molly/namd2/src

Modified Files:
	ComputeIMD.C IMDOutput.C Output.C imd.C imd.h 
Log Message:
Changes from Justin for interactive molecular dynamics code.


===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.2	Fri Aug 20 21:31:49 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: IMDOutput.C      	Status: Up-to-date

   Working revision:	1.2	Fri Aug 20 21:31:57 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/IMDOutput.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.22	Fri Aug 20 21:58:18 1999
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: imd.C            	Status: Up-to-date

   Working revision:	1.2	Fri Aug 20 21:31:42 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/imd.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: imd.h            	Status: Up-to-date

   Working revision:	1.2	Fri Aug 20 21:31:42 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/imd.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday August 25, 1999 @ 11:50
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory thalassa.ks.uiuc.edu:/tmp_mnt/Projects/brunner/NAMD/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
Fixed a divide-by-zero error with fixed atoms in rattle


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1056	Wed Aug 25 16:50:58 1999
   Repository revision:	1.1056	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 25, 1999 @ 13:38
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/molly/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
Fixed bug in divide-by-zero bug fix.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1057	Wed Aug 25 18:38:21 1999
   Repository revision:	1.1057	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 25, 1999 @ 17:14
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2
In directory asuncion.ks.uiuc.edu:/Projects/brunner/NAMD/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
The -dalign flag (part of -fast) was screwing up threads in ReductionMgr.C



===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.36	Wed Aug 25 22:13:16 1999
   Repository revision:	1.36	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1081	Wed Aug 25 21:15:17 1999
   Repository revision:	1.1081	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 25, 1999 @ 17:14
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/arch
In directory asuncion.ks.uiuc.edu:/Projects/brunner/NAMD/namd2/arch

Modified Files:
	Makearch.Solaris 
Log Message:
The -dalign flag (part of -fast) was screwing up threads in ReductionMgr.C



===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.15	Wed Aug 25 22:10:18 1999
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.12)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Thursday August 26, 1999 @ 14:46
Author:	justin

Update of /Projects/namd2/cvsroot/namd2/src
In directory asuncion.ks.uiuc.edu:/Projects/r5/bioinfo/justin/namd2/src

Modified Files:
	ComputeIMD.C ComputeIMD.h IMDOutput.C IMDOutput.h imd.C imd.h 
	vmdsock.C vmdsock.h 
Log Message:
Added handshake between VMD and NAMD to establish relative endianness.
Fixed a bug that resulted from VMD sending only the changed forces to NAMD.
Improved overall handling of received forces.
.



===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.3	Thu Aug 26 19:36:16 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeIMD.h     	Status: Up-to-date

   Working revision:	1.2	Thu Aug 26 18:18:48 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: IMDOutput.C      	Status: Up-to-date

   Working revision:	1.3	Thu Aug 26 15:39:51 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/IMDOutput.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: IMDOutput.h      	Status: Up-to-date

   Working revision:	1.2	Wed Aug 25 05:06:16 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/IMDOutput.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: imd.C            	Status: Up-to-date

   Working revision:	1.3	Wed Aug 25 18:45:45 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/imd.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: imd.h            	Status: Up-to-date

   Working revision:	1.3	Thu Aug 26 18:47:17 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/imd.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: vmdsock.C        	Status: Up-to-date

   Working revision:	1.2	Wed Aug 25 22:43:32 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/vmdsock.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: vmdsock.h        	Status: Up-to-date

   Working revision:	1.2	Tue Aug 24 20:10:43 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/vmdsock.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday August 27, 1999 @ 11:40
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/molly/namd2/src

Modified Files:
	HomePatch.C HomePatch.h 
Log Message:
Eliminated memory allocation and 1-based indexing from MOLLY code.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1058	Fri Aug 27 16:40:19 1999
   Repository revision:	1.1058	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1021	Fri Aug 27 16:40:20 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 27, 1999 @ 13:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/molly/namd2/arch

Modified Files:
	Makearch.alpha 
Log Message:
Added new optimization options for alpha.


===================================================================
File: Makearch.alpha   	Status: Up-to-date

   Working revision:	1.2	Wed Aug 25 19:27:45 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Makearch.alpha,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday August 30, 1999 @ 9:53
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputeTcl.C ScriptTcl.C 
Log Message:
Added error messages for TCL features if TCL unavailable.


===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.12	Mon Aug 30 14:53:31 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.4	Mon Aug 30 14:53:32 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday August 30, 1999 @ 15:43
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet.ks.uiuc.edu:/tmp/cvs-serv26066

Modified Files:
	vmdsock.C 
Log Message:
put types.h at the top


===================================================================
File: vmdsock.C        	Status: Up-to-date

   Working revision:	1.3	Mon Aug 30 20:43:28 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/vmdsock.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday August 30, 1999 @ 14:38
Author:	ferenc

Update of /Projects/namd2/cvsroot/namd2/src
In directory titan:/tmp_mnt/Projects/ising/namd2/src

Modified Files:
	Controller.C ccsinterface.C ccsinterface.h 
Log Message:
Removed negative sign in CCS energies, and fixed some declaration
problems int ccsinterface.[Ch]



===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1079	Mon Aug 30 21:38:35 1999
   Repository revision:	1.1079	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ccsinterface.C   	Status: Up-to-date

   Working revision:	1.2	Mon Aug 30 21:35:25 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ccsinterface.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ccsinterface.h   	Status: Up-to-date

   Working revision:	1.2	Mon Aug 30 21:36:43 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ccsinterface.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday August 30, 1999 @ 15:35
Author:	ferenc

Update of /Projects/namd2/cvsroot/namd2/arch
In directory titan:/tmp_mnt/Projects/ising/namd2/arch

Modified Files:
	Makearch.Origin2000 
Log Message:
added flags for ++server


===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.21	Mon Aug 30 22:34:09 1999
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.15)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Tuesday August 31, 1999 @ 10:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/molly/namd2/src

Modified Files:
	Controller.C HomePatch.C 
Log Message:
Cleaned up MOLLY code.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1080	Tue Aug 31 15:43:29 1999
   Repository revision:	1.1080	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1059	Tue Aug 31 15:43:31 1999
   Repository revision:	1.1059	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 31, 1999 @ 15:59
Author:	justin

Update of /Projects/namd2/cvsroot/namd2/src
In directory oberon.ks.uiuc.edu:/Projects/r5/bioinfo/justin/namd2/src

Modified Files:
	ComputeIMD.C Controller.C IMDOutput.C IMDOutput.h imd.h 
Log Message:
Added ability to set transfer rate of coordinates, to detach or kill the
simulation, and to transfer energies to VMD.


===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.4	Tue Aug 31 16:25:35 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1081	Tue Aug 31 20:59:50 1999
   Repository revision:	1.1081	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IMDOutput.C      	Status: Up-to-date

   Working revision:	1.4	Tue Aug 31 15:18:44 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/IMDOutput.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: IMDOutput.h      	Status: Up-to-date

   Working revision:	1.3	Mon Aug 30 16:22:57 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/IMDOutput.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: imd.h            	Status: Up-to-date

   Working revision:	1.4	Tue Aug 31 16:20:23 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/imd.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday September 2, 1999 @ 18:04
Author:	justin

Update of /Projects/namd2/cvsroot/namd2
In directory asuncion.ks.uiuc.edu:/Projects/r5/bioinfo/justin/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Eliminated MDComm from all files and Makefiles


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.37	Thu Sep  2 22:25:40 1999
   Repository revision:	1.37	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1082	Thu Sep  2 22:24:52 1999
   Repository revision:	1.1082	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 2, 1999 @ 18:04
Author:	justin

Update of /Projects/namd2/cvsroot/namd2/arch
In directory asuncion.ks.uiuc.edu:/Projects/r5/bioinfo/justin/namd2/arch

Modified Files:
	Makearch.HPUX10 Makearch.Origin2000 Makearch.Origin2000-MPI 
	Makearch.RED Makearch.Solaris Makearch.exemplar 
Log Message:
Eliminated MDComm from all files and Makefiles


===================================================================
File: Makearch.HPUX10  	Status: Up-to-date

   Working revision:	1.19	Thu Sep  2 22:26:01 1999
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/arch/Makearch.HPUX10,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.3)

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.22	Thu Sep  2 22:26:28 1999
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.15)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Origin2000-MPI	Status: Up-to-date

   Working revision:	1.5	Thu Sep  2 22:26:40 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000-MPI,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.1)

===================================================================
File: Makearch.RED     	Status: Up-to-date

   Working revision:	1.4	Thu Sep  2 22:26:50 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Makearch.RED,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.1)

===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.16	Thu Sep  2 22:42:45 1999
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.12)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.exemplar	Status: Up-to-date

   Working revision:	1.6	Thu Sep  2 22:27:01 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Makearch.exemplar,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Thursday September 2, 1999 @ 18:04
Author:	justin

Update of /Projects/namd2/cvsroot/namd2/src
In directory asuncion.ks.uiuc.edu:/Projects/r5/bioinfo/justin/namd2/src

Modified Files:
	ComputeGlobal.C Controller.C Output.C Output.h SimParameters.C 
	SimParameters.h 
Removed Files:
	ComputeMDComm.C ComputeMDComm.h mdcomm.C mdcomm.h 
Log Message:
Eliminated MDComm from all files and Makefiles


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.15	Thu Sep  2 23:04:48 1999
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1082	Thu Sep  2 23:04:50 1999
   Repository revision:	1.1082	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.23	Thu Sep  2 23:04:50 1999
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Output.h         	Status: Up-to-date

   Working revision:	1.7	Thu Sep  2 23:04:51 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/Output.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)
	development-3            	(revision: 1.1)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1077	Thu Sep  2 23:04:52 1999
   Repository revision:	1.1077	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1043	Thu Sep  2 23:04:52 1999
   Repository revision:	1.1043	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeMDComm.C		Status: Up-to-date

   Working revision:	No entry for ComputeMDComm.C
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeMDComm.C,v

===================================================================
File: no file ComputeMDComm.h		Status: Up-to-date

   Working revision:	No entry for ComputeMDComm.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeMDComm.h,v

===================================================================
File: no file mdcomm.C		Status: Up-to-date

   Working revision:	No entry for mdcomm.C
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/mdcomm.C,v

===================================================================
File: no file mdcomm.h		Status: Up-to-date

   Working revision:	No entry for mdcomm.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/mdcomm.h,v


****************************************
Date:	Friday September 3, 1999 @ 15:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2

Modified Files:
	Make.depends 
Log Message:
Support for non-orthogonal periodic boundary conditions.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.38	Fri Sep  3 20:40:20 1999
   Repository revision:	1.38	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Friday September 3, 1999 @ 15:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/src

Modified Files:
	Broadcasts.h ComputeDPME.C ComputeDPMTA.C ComputeFullDirect.C 
	ComputeFullDirectBase.h ComputeNonbondedUtil.C ComputePme.C 
	ComputePmeMsgs.C ComputePmeMsgs.h Controller.C HomePatch.C 
	Lattice.h PDB.C PDB.h PatchMap.C PatchMap.h PatchMap.inl 
	PmeBase.C PmeBase.h PmeCoulomb.C PmeCoulomb.h PmeKSpace.C 
	PmeKSpace.h PmeRealSpace.C PmeRealSpace.h RecBisection.C 
	Sequencer.C SimParameters.C SimParameters.h TestController.C 
	WorkDistrib.C 
Added Files:
	Tensor.h 
Log Message:
Support for non-orthogonal periodic boundary conditions.


===================================================================
File: Tensor.h         	Status: Up-to-date

   Working revision:	1.1	Fri Aug 13 19:49:42 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/Tensor.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.6	Fri Sep  3 20:46:05 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.17	Fri Sep  3 20:46:06 1999
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.10)
	release-2-0              	(revision: 1.10)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1060	Fri Sep  3 20:46:06 1999
   Repository revision:	1.1060	/Projects/namd2/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1054)
	release-2-0              	(revision: 1.1053)
	release-2-0-beta-3       	(revision: 1.1053)
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1023	Fri Sep  3 20:46:08 1999
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1012)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirectBase.h	Status: Up-to-date

   Working revision:	1.4	Fri Sep  3 20:46:08 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirectBase.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1027	Fri Sep  3 20:46:09 1999
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.6	Fri Sep  3 20:46:10 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputePmeMsgs.C 	Status: Up-to-date

   Working revision:	1.2	Fri Sep  3 20:46:11 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputePmeMsgs.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputePmeMsgs.h 	Status: Up-to-date

   Working revision:	1.2	Fri Sep  3 20:46:12 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputePmeMsgs.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1083	Fri Sep  3 20:46:12 1999
   Repository revision:	1.1083	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1060	Fri Sep  3 20:46:14 1999
   Repository revision:	1.1060	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1011	Fri Sep  3 20:46:15 1999
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1009	Fri Sep  3 20:46:16 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.h            	Status: Up-to-date

   Working revision:	1.1003	Fri Sep  3 20:46:17 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/PDB.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1022	Fri Sep  3 20:46:18 1999
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1014	Fri Sep  3 20:46:19 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.inl     	Status: Up-to-date

   Working revision:	1.4	Fri Sep  3 20:46:19 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/PatchMap.inl,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.1)

===================================================================
File: PmeBase.C        	Status: Up-to-date

   Working revision:	1.2	Thu Sep  2 17:00:51 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/PmeBase.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeBase.h        	Status: Up-to-date

   Working revision:	1.2	Thu Sep  2 18:36:17 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/PmeBase.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeCoulomb.C     	Status: Up-to-date

   Working revision:	1.3	Fri Sep  3 20:26:03 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/PmeCoulomb.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeCoulomb.h     	Status: Up-to-date

   Working revision:	1.2	Thu Sep  2 19:02:35 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/PmeCoulomb.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeKSpace.C      	Status: Up-to-date

   Working revision:	1.2	Fri Sep  3 20:16:09 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/PmeKSpace.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeKSpace.h      	Status: Up-to-date

   Working revision:	1.2	Thu Sep  2 18:45:32 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/PmeKSpace.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeRealSpace.C   	Status: Up-to-date

   Working revision:	1.2	Thu Sep  2 18:32:30 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/PmeRealSpace.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeRealSpace.h   	Status: Up-to-date

   Working revision:	1.2	Thu Sep  2 18:45:02 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/PmeRealSpace.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: RecBisection.C   	Status: Up-to-date

   Working revision:	1.5	Fri Sep  3 20:46:25 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/RecBisection.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1072	Fri Sep  3 20:46:26 1999
   Repository revision:	1.1072	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1078	Fri Sep  3 20:46:27 1999
   Repository revision:	1.1078	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1044	Fri Sep  3 20:46:28 1999
   Repository revision:	1.1044	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: TestController.C 	Status: Up-to-date

   Working revision:	1.8	Fri Sep  3 20:46:31 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/TestController.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1070	Fri Sep  3 20:46:31 1999
   Repository revision:	1.1070	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday September 7, 1999 @ 16:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory oberon.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Fixed missing erfc defs on KCC.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1079	Tue Sep  7 21:58:10 1999
   Repository revision:	1.1079	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 8, 1999 @ 11:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added internal PUB3DFFT package.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.39	Sat Sep  4 21:14:13 1999
   Repository revision:	1.39	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1083	Wed Sep  8 15:51:04 1999
   Repository revision:	1.1083	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 8, 1999 @ 11:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/src

Modified Files:
	ComputeDPMEMsgs.C ComputeDPMEMsgs.h ComputeMgr.C ComputePme.h 
	Node.C PmeFFT.C PmeFFT.h SimParameters.C WorkDistrib.C dc.pl 
Added Files:
	pub3dfft.C pub3dfft.h 
Log Message:
Added internal PUB3DFFT package.


===================================================================
File: pub3dfft.C       	Status: Up-to-date

   Working revision:	1.1	Tue Sep  7 23:20:37 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/pub3dfft.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pub3dfft.h       	Status: Up-to-date

   Working revision:	1.1	Sun Sep  5 23:26:11 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/pub3dfft.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDPMEMsgs.C	Status: Up-to-date

   Working revision:	1.4	Wed Sep  8 16:05:44 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeDPMEMsgs.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeDPMEMsgs.h	Status: Up-to-date

   Working revision:	1.3	Wed Sep  8 16:05:44 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeDPMEMsgs.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1029	Wed Sep  8 16:05:44 1999
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.2	Wed Sep  8 16:05:44 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1038	Wed Sep  8 16:05:45 1999
   Repository revision:	1.1038	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PmeFFT.C         	Status: Up-to-date

   Working revision:	1.2	Tue Sep  7 23:56:22 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/PmeFFT.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeFFT.h         	Status: Up-to-date

   Working revision:	1.3	Sun Sep  5 23:22:10 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/PmeFFT.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1080	Wed Sep  8 16:05:46 1999
   Repository revision:	1.1080	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1071	Wed Sep  8 16:05:46 1999
   Repository revision:	1.1071	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dc.pl            	Status: Up-to-date

   Working revision:	1.1004	Sat Sep  4 21:12:59 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/dc.pl,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 8, 1999 @ 14:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory naiad.ks.uiuc.edu:/tmp/namd2/arch

Modified Files:
	Makearch.alpha 
Log Message:
Added back TCL and FFT options.


===================================================================
File: Makearch.alpha   	Status: Up-to-date

   Working revision:	1.3	Wed Sep  8 16:53:58 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Makearch.alpha,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday September 8, 1999 @ 18:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2

Modified Files:
	Makefile 
Log Message:
Cleaned up compilation.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1084	Wed Sep  8 19:36:09 1999
   Repository revision:	1.1084	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 8, 1999 @ 18:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/arch

Modified Files:
	Makearch.KCC-i486 Makearch.Origin2000 Makearch.Origin2000-MPI 
	Makearch.RED Makearch.SP3 Makearch.Solaris Makearch.T3E 
	Makearch.alpha Makearch.exemplar Makearch.g++-alpha 
	Makearch.g++-i486 Makearch.template 
Added Files:
	Makearch.HPUX 
Removed Files:
	Makearch.HPUX10 Makearch.HPUX9 Makearch.KCC Makearch.UniSol 
	Makearch.g++ 
Log Message:
Cleaned up compilation.


===================================================================
File: Makearch.HPUX    	Status: Up-to-date

   Working revision:	1.1	Wed Sep  8 22:42:41 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Makearch.HPUX,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.10	Wed Sep  8 21:36:41 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.23	Wed Sep  8 21:37:06 1999
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.15)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Origin2000-MPI	Status: Up-to-date

   Working revision:	1.6	Wed Sep  8 21:37:22 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000-MPI,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.1)

===================================================================
File: Makearch.RED     	Status: Up-to-date

   Working revision:	1.5	Wed Sep  8 21:45:03 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Makearch.RED,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.1)

===================================================================
File: Makearch.SP3     	Status: Up-to-date

   Working revision:	1.9	Wed Sep  8 21:37:59 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/arch/Makearch.SP3,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.16	Wed Sep  8 21:34:43 1999
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.12)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.12	Wed Sep  8 21:56:15 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.10)
	release-2-0-beta-2       	(revision: 1.10)
	release-alpha-1          	(revision: 1.4)

===================================================================
File: Makearch.alpha   	Status: Up-to-date

   Working revision:	1.4	Wed Sep  8 21:34:50 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Makearch.alpha,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.exemplar	Status: Up-to-date

   Working revision:	1.7	Wed Sep  8 21:38:50 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Makearch.exemplar,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: Makearch.g++-alpha	Status: Up-to-date

   Working revision:	1.3	Wed Sep  8 21:39:03 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Makearch.g++-alpha,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.g++-i486	Status: Up-to-date

   Working revision:	1.6	Wed Sep  8 21:39:12 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Makearch.g++-i486,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)

===================================================================
File: Makearch.template	Status: Up-to-date

   Working revision:	1.8	Wed Sep  8 21:39:22 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/arch/Makearch.template,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: no file Makearch.HPUX10		Status: Up-to-date

   Working revision:	No entry for Makearch.HPUX10
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.HPUX10,v

===================================================================
File: no file Makearch.HPUX9		Status: Up-to-date

   Working revision:	No entry for Makearch.HPUX9
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.HPUX9,v

===================================================================
File: no file Makearch.KCC		Status: Up-to-date

   Working revision:	No entry for Makearch.KCC
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.KCC,v

===================================================================
File: no file Makearch.UniSol		Status: Up-to-date

   Working revision:	No entry for Makearch.UniSol
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.UniSol,v

===================================================================
File: no file Makearch.g++		Status: Up-to-date

   Working revision:	No entry for Makearch.g++
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.g++,v


****************************************
Date:	Wednesday September 8, 1999 @ 18:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/dpmta-2.6/mpole
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/dpmta-2.6/mpole

Modified Files:
	Makefile 
Log Message:
Cleaned up compilation.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.5	Wed Sep  8 23:02:36 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/dpmta-2.6/mpole/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Wednesday September 8, 1999 @ 18:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/pvm3
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/pvm3

Modified Files:
	Makefile 
Log Message:
Cleaned up compilation.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.14	Wed Sep  8 22:16:18 1999
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/pvm3/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.13)
	release-2-0              	(revision: 1.13)
	release-2-0-beta-3       	(revision: 1.13)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.11)
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday September 8, 1999 @ 18:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/src

Modified Files:
	ParseOptions.C PmeFFT.C PmeFFT.h common.C common.h pub3dfft.C 
Log Message:
Cleaned up compilation.


===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1012	Wed Sep  8 23:02:55 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PmeFFT.C         	Status: Up-to-date

   Working revision:	1.3	Wed Sep  8 22:34:10 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/PmeFFT.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeFFT.h         	Status: Up-to-date

   Working revision:	1.4	Wed Sep  8 22:30:25 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/PmeFFT.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1022	Wed Sep  8 23:02:56 1999
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1024	Wed Sep  8 23:02:56 1999
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: pub3dfft.C       	Status: Up-to-date

   Working revision:	1.2	Wed Sep  8 22:20:21 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/pub3dfft.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday September 9, 1999 @ 16:20
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/arch

Modified Files:
	Makearch.HPUX Makearch.KCC-i486 Makearch.Origin2000 
	Makearch.RED Makearch.SP3 Makearch.Solaris Makearch.T3E 
	Makearch.alpha Makearch.exemplar Makearch.g++-alpha 
	Makearch.g++-i486 Makearch.template 
Log Message:
Fixed link order for fftw.


===================================================================
File: Makearch.HPUX    	Status: Up-to-date

   Working revision:	1.2	Thu Sep  9 21:01:05 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Makearch.HPUX,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.11	Thu Sep  9 21:01:12 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.24	Thu Sep  9 21:01:18 1999
   Repository revision:	1.24	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.15)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.RED     	Status: Up-to-date

   Working revision:	1.6	Thu Sep  9 21:01:41 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Makearch.RED,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.1)

===================================================================
File: Makearch.SP3     	Status: Up-to-date

   Working revision:	1.10	Thu Sep  9 21:01:48 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/arch/Makearch.SP3,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.17	Thu Sep  9 21:01:55 1999
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.12)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.13	Thu Sep  9 21:02:04 1999
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.10)
	release-2-0-beta-2       	(revision: 1.10)
	release-alpha-1          	(revision: 1.4)

===================================================================
File: Makearch.alpha   	Status: Up-to-date

   Working revision:	1.5	Thu Sep  9 20:58:57 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Makearch.alpha,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.exemplar	Status: Up-to-date

   Working revision:	1.8	Thu Sep  9 21:02:20 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/arch/Makearch.exemplar,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: Makearch.g++-alpha	Status: Up-to-date

   Working revision:	1.4	Thu Sep  9 21:02:31 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Makearch.g++-alpha,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.g++-i486	Status: Up-to-date

   Working revision:	1.7	Thu Sep  9 21:02:39 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Makearch.g++-i486,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)

===================================================================
File: Makearch.template	Status: Up-to-date

   Working revision:	1.9	Thu Sep  9 21:02:45 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/arch/Makearch.template,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Thursday September 9, 1999 @ 16:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2

Modified Files:
	Makefile 
Log Message:
Cleaned up Makefile.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1085	Thu Sep  9 21:24:56 1999
   Repository revision:	1.1085	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 9, 1999 @ 16:40
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/efence
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/efence

Removed Files:
	CHANGES COPYING ElectricFence-2.0.5 HPUX.Install Makefile 
	README README.HPPD README.pen efence.c efence.c.cln efence.h 
	eftest.c libefence.3 page.c print.c tstheap.c 
Log Message:
Removing all electric fence files.


===================================================================
File: no file CHANGES		Status: Up-to-date

   Working revision:	No entry for CHANGES
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/CHANGES,v

===================================================================
File: no file COPYING		Status: Up-to-date

   Working revision:	No entry for COPYING
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/COPYING,v

===================================================================
File: no file ElectricFence-2.0.5		Status: Up-to-date

   Working revision:	No entry for ElectricFence-2.0.5
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/ElectricFence-2.0.5,v

===================================================================
File: no file HPUX.Install		Status: Up-to-date

   Working revision:	No entry for HPUX.Install
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/HPUX.Install,v

===================================================================
File: no file Makefile		Status: Up-to-date

   Working revision:	No entry for Makefile
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/Makefile,v

===================================================================
File: no file README		Status: Up-to-date

   Working revision:	No entry for README
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/README,v

===================================================================
File: no file README.HPPD		Status: Up-to-date

   Working revision:	No entry for README.HPPD
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/README.HPPD,v

===================================================================
File: no file README.pen		Status: Up-to-date

   Working revision:	No entry for README.pen
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/README.pen,v

===================================================================
File: no file efence.c		Status: Up-to-date

   Working revision:	No entry for efence.c
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/efence.c,v

===================================================================
File: no file efence.c.cln		Status: Up-to-date

   Working revision:	No entry for efence.c.cln
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/efence.c.cln,v

===================================================================
File: no file efence.h		Status: Up-to-date

   Working revision:	No entry for efence.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/efence.h,v

===================================================================
File: no file eftest.c		Status: Up-to-date

   Working revision:	No entry for eftest.c
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/eftest.c,v

===================================================================
File: no file libefence.3		Status: Up-to-date

   Working revision:	No entry for libefence.3
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/libefence.3,v

===================================================================
File: no file page.c		Status: Up-to-date

   Working revision:	No entry for page.c
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/page.c,v

===================================================================
File: no file print.c		Status: Up-to-date

   Working revision:	No entry for print.c
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/print.c,v

===================================================================
File: no file tstheap.c		Status: Up-to-date

   Working revision:	No entry for tstheap.c
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/efence/Attic/tstheap.c,v


****************************************
Date:	Saturday September 11, 1999 @ 15:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory naiad.ks.uiuc.edu:/tmp/namd2/src

Modified Files:
	Vector.h pub3dfft.C 
Log Message:
Small changes for better performance.


===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.1003	Sat Sep 11 20:44:11 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/Vector.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: pub3dfft.C       	Status: Up-to-date

   Working revision:	1.3	Sat Sep 11 20:41:58 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/pub3dfft.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday September 12, 1999 @ 14:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/src

Modified Files:
	CollectionMaster.C CollectionMaster.h CollectionMgr.C 
	CollectionMgr.h IMDOutput.C IMDOutput.h Output.C Output.h 
	Sequencer.C Vector.h 
Log Message:
Collections now use floats when possible.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1020	Sun Sep 12 19:33:13 1999
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1017	Sun Sep 12 19:33:14 1999
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1015	Sun Sep 12 19:33:15 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1012	Sun Sep 12 19:33:16 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IMDOutput.C      	Status: Up-to-date

   Working revision:	1.5	Sat Sep 11 19:02:00 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/IMDOutput.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: IMDOutput.h      	Status: Up-to-date

   Working revision:	1.4	Sat Sep 11 19:08:28 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/IMDOutput.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.24	Sun Sep 12 19:33:18 1999
   Repository revision:	1.24	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Output.h         	Status: Up-to-date

   Working revision:	1.8	Sun Sep 12 19:33:19 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/Output.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)
	development-3            	(revision: 1.1)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1073	Sun Sep 12 19:33:20 1999
   Repository revision:	1.1073	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.1004	Sun Sep 12 19:33:20 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/Vector.h,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 13, 1999 @ 14:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory despina.ks.uiuc.edu:/tmp_mnt/Projects/namd2/Programmers/jim/periodic/namd2/src

Modified Files:
	PmeFFT.C 
Log Message:
Fixed SGI FFT initializer routine name.


===================================================================
File: PmeFFT.C         	Status: Up-to-date

   Working revision:	1.4	Mon Sep 13 19:42:38 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/PmeFFT.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday September 13, 1999 @ 15:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet.ks.uiuc.edu:/tmp/cvs-serv1027

Modified Files:
	PmeFFT.h 
Log Message:
Fixed missing include for SGI FFT library.


===================================================================
File: PmeFFT.h         	Status: Up-to-date

   Working revision:	1.5	Mon Sep 13 20:28:33 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/PmeFFT.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday September 14, 1999 @ 10:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2

Added Files:
	announce.txt license.txt notes.txt 
Removed Files:
	Todo.txt 
Log Message:
Cleaning up source dirs for upcoming release.  Added 2.0 files.


===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.1	Tue Sep 14 15:48:02 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	No Tags Exist

===================================================================
File: license.txt      	Status: Up-to-date

   Working revision:	1.1	Tue Sep 14 15:48:39 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/license.txt,v

   Existing Tags:
	No Tags Exist

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.1	Tue Sep 14 15:47:57 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file Todo.txt		Status: Up-to-date

   Working revision:	No entry for Todo.txt
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/Attic/Todo.txt,v


****************************************
Date:	Tuesday September 14, 1999 @ 12:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/arch

Modified Files:
	Makearch.RED 
Log Message:
Fixed typo.


===================================================================
File: Makearch.RED     	Status: Up-to-date

   Working revision:	1.7	Tue Sep 14 17:05:32 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Makearch.RED,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.1)


****************************************
Date:	Tuesday September 14, 1999 @ 12:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2

Modified Files:
	announce.txt notes.txt 
Log Message:
Updated for 2.1b1.


===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.2	Tue Sep 14 17:20:14 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	No Tags Exist

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.2	Tue Sep 14 17:19:32 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday September 14, 1999 @ 12:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2

Modified Files:
	notes.txt 
Log Message:
Fixed typo.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.3	Tue Sep 14 17:24:33 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday September 14, 1999 @ 13:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Bug fix contributed by A. Krammer.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1037	Tue Sep 14 18:16:55 1999
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday September 14, 1999 @ 16:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2

Modified Files:
	notes.txt 
Log Message:
Fixed charm arch for exemplar.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.4	Tue Sep 14 21:07:17 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday September 14, 1999 @ 16:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/arch

Modified Files:
	Makearch.exemplar 
Log Message:
Fixed charm arch for exemplar.


===================================================================
File: Makearch.exemplar	Status: Up-to-date

   Working revision:	1.9	Tue Sep 14 21:07:34 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/arch/Makearch.exemplar,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Wednesday September 15, 1999 @ 13:08
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2
In directory bastogne.ks.uiuc.edu:/Projects/brunner/testing/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added CXXSIMPARAMOPTS, to allow the T3E to compile


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.40	Wed Sep 15 17:49:56 1999
   Repository revision:	1.40	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1086	Wed Sep 15 18:05:41 1999
   Repository revision:	1.1086	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 15, 1999 @ 13:08
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/arch
In directory bastogne.ks.uiuc.edu:/Projects/brunner/testing/namd2/arch

Modified Files:
	Makearch.HPUX Makearch.KCC-i486 Makearch.Origin2000 
	Makearch.Origin2000-MPI Makearch.RED Makearch.SP3 
	Makearch.Solaris Makearch.T3E Makearch.alpha Makearch.exemplar 
	Makearch.g++-alpha Makearch.g++-i486 Makearch.template 
Log Message:
Added CXXSIMPARAMOPTS, to allow the T3E to compile


===================================================================
File: Makearch.HPUX    	Status: Up-to-date

   Working revision:	1.3	Wed Sep 15 17:50:29 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Makearch.HPUX,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.12	Wed Sep 15 17:51:14 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.25	Wed Sep 15 17:51:42 1999
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.15)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Origin2000-MPI	Status: Up-to-date

   Working revision:	1.7	Wed Sep 15 17:52:10 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000-MPI,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.1)

===================================================================
File: Makearch.RED     	Status: Up-to-date

   Working revision:	1.8	Wed Sep 15 17:52:26 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/arch/Makearch.RED,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.1)

===================================================================
File: Makearch.SP3     	Status: Up-to-date

   Working revision:	1.11	Wed Sep 15 17:52:37 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/arch/Makearch.SP3,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.18	Wed Sep 15 17:53:10 1999
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.12)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.14	Wed Sep 15 18:07:13 1999
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.10)
	release-2-0-beta-2       	(revision: 1.10)
	release-alpha-1          	(revision: 1.4)

===================================================================
File: Makearch.alpha   	Status: Up-to-date

   Working revision:	1.6	Wed Sep 15 17:53:29 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Makearch.alpha,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.exemplar	Status: Up-to-date

   Working revision:	1.10	Wed Sep 15 17:53:39 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/arch/Makearch.exemplar,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: Makearch.g++-alpha	Status: Up-to-date

   Working revision:	1.5	Wed Sep 15 17:53:50 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Makearch.g++-alpha,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.g++-i486	Status: Up-to-date

   Working revision:	1.8	Wed Sep 15 17:53:59 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/arch/Makearch.g++-i486,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)

===================================================================
File: Makearch.template	Status: Up-to-date

   Working revision:	1.10	Wed Sep 15 17:54:10 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/arch/Makearch.template,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Wednesday September 15, 1999 @ 15:39
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hamlet.ks.uiuc.edu:/tmp/cvs-serv10012/arch

Modified Files:
	Makearch.T3E 
Log Message:
Made a special compiler option variable for SimParameters.C




===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.15	Wed Sep 15 20:39:01 1999
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.10)
	release-2-0-beta-2       	(revision: 1.10)
	release-alpha-1          	(revision: 1.4)


****************************************
Date:	Wednesday September 15, 1999 @ 16:35
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hamlet.ks.uiuc.edu:/tmp/cvs-serv10221/arch

Modified Files:
	Makearch.Origin2000-MPI 
Log Message:
Use Charm version mpi-origin which supercedes origin-mpi



===================================================================
File: Makearch.Origin2000-MPI	Status: Up-to-date

   Working revision:	1.8	Wed Sep 15 21:35:34 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000-MPI,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.1)


****************************************
Date:	Wednesday September 15, 1999 @ 17:07
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/src

Modified Files:
	main.C 
Log Message:
Updated version number to 2.1b1


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1017	Wed Sep 15 22:07:14 1999
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 15, 1999 @ 19:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hamlet.ks.uiuc.edu:/tmp/cvs-serv10906

Modified Files:
	Makearch.T3E 
Log Message:
Turned off TCL and FFTW.


===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.16	Thu Sep 16 00:45:16 1999
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.10)
	release-2-0-beta-2       	(revision: 1.10)
	release-alpha-1          	(revision: 1.4)


****************************************
Date:	Wednesday September 15, 1999 @ 19:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hamlet.ks.uiuc.edu:/tmp/cvs-serv10924

Modified Files:
	Makearch.Origin2000 Makearch.Origin2000-MPI 
Log Message:
Turned off TCL and FFTW.


===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.26	Thu Sep 16 00:45:44 1999
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.15)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Origin2000-MPI	Status: Up-to-date

   Working revision:	1.9	Thu Sep 16 00:45:44 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000-MPI,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.1)


****************************************
Date:	Wednesday September 15, 1999 @ 19:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/arch

Modified Files:
	Makearch.HPUX Makearch.KCC-i486 Makearch.SP3 Makearch.Solaris 
	Makearch.alpha Makearch.g++-alpha Makearch.g++-i486 
Log Message:
Turned off TCL and FFTW.


===================================================================
File: Makearch.HPUX    	Status: Up-to-date

   Working revision:	1.4	Thu Sep 16 00:46:20 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Makearch.HPUX,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.13	Thu Sep 16 00:46:29 1999
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: Makearch.SP3     	Status: Up-to-date

   Working revision:	1.12	Thu Sep 16 00:46:44 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/arch/Makearch.SP3,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.19	Thu Sep 16 00:46:53 1999
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.12)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.alpha   	Status: Up-to-date

   Working revision:	1.7	Thu Sep 16 00:47:03 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Makearch.alpha,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.g++-alpha	Status: Up-to-date

   Working revision:	1.6	Thu Sep 16 00:47:14 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Makearch.g++-alpha,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.g++-i486	Status: Up-to-date

   Working revision:	1.9	Thu Sep 16 00:47:24 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/arch/Makearch.g++-i486,v

   Existing Tags:
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)


****************************************
Date:	Wednesday September 15, 1999 @ 20:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2

Modified Files:
	notes.txt 
Log Message:
Updated release notes with new features and endian issues.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.5	Thu Sep 16 01:15:57 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday September 15, 1999 @ 22:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/tmp/namd2

Modified Files:
	config 
Log Message:
Eliminated warnings about missing efence directory.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.7	Thu Sep 16 03:44:57 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Wednesday September 15, 1999 @ 22:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/namd2/src

Modified Files:
	main.C 
Log Message:
Put back warning about experimental version.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1018	Thu Sep 16 03:48:39 1999
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 22, 1999 @ 15:28
Author:	kvandivo

Update of /Projects/namd2/cvsroot/namd2/arch
In directory caracas.ks.uiuc.edu:/Projects/collaboratory/kvandivo/namd2/arch

Modified Files:
	Makearch.KCC-i486 
Log Message:
Added CCS defines, commented out by default --Robert




===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.14	Wed Sep 22 20:27:13 1999
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.13)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Wednesday September 22, 1999 @ 17:08
Author:	kvandivo

Update of /Projects/namd2/cvsroot/namd2/arch
In directory caracas.ks.uiuc.edu:/Projects/collaboratory/kvandivo/namd2/arch

Modified Files:
	Makearch.Origin2000 
Log Message:
Added (commented out) lines for compiling with CCS enabled.


===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.27	Wed Sep 22 22:06:47 1999
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.26)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.15)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Wednesday September 22, 1999 @ 19:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Cleaned up code while looking for alpha bug.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1072	Thu Sep 23 00:14:23 1999
   Repository revision:	1.1072	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 22, 1999 @ 19:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/arch

Modified Files:
	Makearch.alpha 
Log Message:
Removed -fp_reorder option since compiler bug was breaking COM motion removal.


===================================================================
File: Makearch.alpha   	Status: Up-to-date

   Working revision:	1.8	Thu Sep 23 00:09:07 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/arch/Makearch.alpha,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.7)


****************************************
Date:	Thursday September 23, 1999 @ 15:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/src

Modified Files:
	ComputeCylindricalBC.C ComputeSphericalBC.C SimParameters.C 
	SimParameters.h 
Log Message:
Eliminated COM centering from docs and params.


===================================================================
File: ComputeCylindricalBC.C	Status: Up-to-date

   Working revision:	1.8	Thu Sep 23 20:33:39 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ComputeCylindricalBC.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)

===================================================================
File: ComputeSphericalBC.C	Status: Up-to-date

   Working revision:	1.3	Thu Sep 23 19:55:50 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeSphericalBC.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1081	Thu Sep 23 20:33:40 1999
   Repository revision:	1.1081	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1045	Thu Sep 23 20:33:40 1999
   Repository revision:	1.1045	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 23, 1999 @ 15:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/periodic/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Eliminated COM centering from docs and params.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.20	Thu Sep 23 20:15:43 1999
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday September 24, 1999 @ 12:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Scr/oberon/jim/namd2

Modified Files:
	Make.depends 
Log Message:
Added packmsg.h with macros to simplify packing.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.41	Fri Sep 24 16:36:07 1999
   Repository revision:	1.41	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Friday September 24, 1999 @ 12:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Scr/oberon/jim/namd2/src

Modified Files:
	CollectionMaster.C ComputeDPMEMsgs.C ComputeGlobalMsgs.C 
	ComputePmeMsgs.C HomePatch.C LdbCoordinator.C 
	MigrateAtomsMsg.C MigrateAtomsMsg.h Migration.h PatchMgr.C 
	ProxyMgr.C ProxyMgr.h 
Added Files:
	packmsg.h 
Log Message:
Added packmsg.h with macros to simplify packing.


===================================================================
File: packmsg.h        	Status: Up-to-date

   Working revision:	1.1	Fri Sep 24 16:36:49 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/packmsg.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1021	Fri Sep 24 17:15:08 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDPMEMsgs.C	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 17:15:08 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeDPMEMsgs.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeGlobalMsgs.C	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 17:15:08 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMsgs.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputePmeMsgs.C 	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 17:15:09 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputePmeMsgs.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1061	Fri Sep 24 17:15:09 1999
   Repository revision:	1.1061	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.37	Fri Sep 24 16:19:39 1999
   Repository revision:	1.37	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: MigrateAtomsMsg.C	Status: Up-to-date

   Working revision:	1.10	Fri Sep 24 17:15:09 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/MigrateAtomsMsg.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.7)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: MigrateAtomsMsg.h	Status: Up-to-date

   Working revision:	1.10	Fri Sep 24 17:15:10 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/MigrateAtomsMsg.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.1006	Fri Sep 24 17:15:10 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/Migration.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1019	Fri Sep 24 17:15:10 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1026	Fri Sep 24 17:15:10 1999
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1023)
	release-2-0              	(revision: 1.1023)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1023)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1013	Fri Sep 24 17:15:10 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 24, 1999 @ 14:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	packmsg.h 
Log Message:
Fixed template declaration.


===================================================================
File: packmsg.h        	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 19:56:09 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/packmsg.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday September 24, 1999 @ 15:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Removed dead files.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.42	Fri Sep 24 20:03:08 1999
   Repository revision:	1.42	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1087	Fri Sep 24 20:02:58 1999
   Repository revision:	1.1087	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 24, 1999 @ 15:20
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	AtomMap.C AtomMap.h BOCgroup.h BroadcastClient.C 
	BroadcastClient.h BroadcastMgr.C BroadcastMgr.ci 
	BroadcastMgr.h Broadcasts.h CollectionMaster.C 
	CollectionMaster.ci CollectionMaster.h CollectionMgr.C 
	CollectionMgr.ci CollectionMgr.h Compute.C Compute.h 
	ComputeAngles.C ComputeAngles.h ComputeAngles.inl 
	ComputeBonds.C ComputeBonds.h ComputeBonds.inl 
	ComputeCylindricalBC.C ComputeCylindricalBC.h ComputeDPME.C 
	ComputeDPME.h ComputeDPMEMsgs.C ComputeDPMEMsgs.h 
	ComputeDPMTA.C ComputeDPMTA.h ComputeDihedrals.C 
	ComputeDihedrals.h ComputeDihedrals.inl ComputeFreeEnergy.C 
	ComputeFreeEnergy.h ComputeFullDirect.C ComputeFullDirect.h 
	ComputeFullDirectBase.h ComputeGeneral.C ComputeGeneral.h 
	ComputeGlobal.C ComputeGlobal.h ComputeGlobalEasy.C 
	ComputeGlobalEasy.h ComputeGlobalMaster.C 
	ComputeGlobalMaster.h ComputeGlobalMsgs.C ComputeGlobalMsgs.h 
	ComputeHomeAtoms.h ComputeHomePatches.C ComputeHomePatches.h 
	ComputeImpropers.C ComputeImpropers.h ComputeMap.C 
	ComputeMap.h ComputeMgr.C ComputeMgr.ci ComputeMgr.h 
	ComputeMisc.h ComputeNonbondedBase.h ComputeNonbondedExcl.C 
	ComputeNonbondedExcl.h ComputeNonbondedPair.C 
	ComputeNonbondedPair.h ComputeNonbondedSelf.C 
	ComputeNonbondedSelf.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h ComputePatch.C ComputePatch.h 
	ComputePatchPair.C ComputePatchPair.h ComputePme.C 
	ComputePme.h ComputePmeMsgs.C ComputePmeMsgs.h 
	ComputeRestraints.C ComputeRestraints.h ComputeTcl.C 
	ComputeTcl.h ConfigList.C ConfigList.h Controller.C 
	Controller.h Debug.h FreeEnergyLambdMgr.C FreeEnergyLambdMgr.h 
	FreeEnergyLambda.C FreeEnergyLambda.h FreeEnergyParse.C 
	FreeEnergyRMgr.C FreeEnergyRMgr.h FreeEnergyRestrain.C 
	FreeEnergyRestrain.h FreeEnergyVector.C HBondPairData.h 
	HBondParam.C HBondParam.h HomePatch.C HomePatch.h 
	HomePatchList.h HomePatchTypes.h Hydrogen.h InfoStream.C 
	InfoStream.h Inform.C Inform.h IntList.h LJTable.C LJTable.h 
	Lattice.h LdbCoordinator.ci LdbCoordinator.h LintList.h 
	MigrateAtomsMsg.C MigrateAtomsMsg.h Migration.h Molecule.C 
	Molecule.h Namd.C Namd.h NamdOneTools.C NamdOneTools.h 
	NamdState.C NamdState.h NamdTypes.h Node.C Node.ci Node.h 
	Output.C Output.h PDB.C PDB.h PDBData.C PDBData.h Parameters.C 
	Parameters.h ParseOptions.C ParseOptions.h Patch.C Patch.h 
	PatchMap.C PatchMap.h PatchMap.inl PatchMgr.C PatchMgr.ci 
	PatchMgr.h PatchTypes.h ProxyMgr.C ProxyMgr.ci ProxyMgr.h 
	ProxyPatch.C ProxyPatch.h RecBisection.C RecBisection.h 
	ReductionMgr.C ReductionMgr.ci ReductionMgr.h ScriptTcl.C 
	ScriptTcl.h Sequencer.C Sequencer.h SimParameters.C 
	SimParameters.h TestController.C TestController.h 
	TestSequencer.C TestSequencer.h Vector.h WorkDistrib.C 
	WorkDistrib.ci WorkDistrib.h common.C common.h dcdlib.C 
	dcdlib.h main.C main.ci main.h strlib.C strlib.h structures.h 
Removed Files:
	IntTree.C IntTree.h Trial.h 
Log Message:
Removed RCS logs and dead files.


===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1011	Fri Sep 24 18:49:47 1999
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/AtomMap.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: AtomMap.h        	Status: Up-to-date

   Working revision:	1.1006	Fri Sep 24 18:50:09 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/AtomMap.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.1006	Fri Sep 24 18:50:21 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/BOCgroup.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BroadcastClient.C	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 18:50:32 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/BroadcastClient.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: BroadcastClient.h	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 18:50:42 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/BroadcastClient.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: BroadcastMgr.C   	Status: Up-to-date

   Working revision:	1.11	Fri Sep 24 18:50:56 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/BroadcastMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.10)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.2)

===================================================================
File: BroadcastMgr.ci  	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 18:51:04 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/BroadcastMgr.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: BroadcastMgr.h   	Status: Up-to-date

   Working revision:	1.12	Fri Sep 24 18:51:18 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/BroadcastMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)

===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.7	Fri Sep 24 18:51:29 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1022	Fri Sep 24 18:51:42 1999
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.ci	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 18:51:55 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1018	Fri Sep 24 18:52:07 1999
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1016	Fri Sep 24 18:52:18 1999
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.ci 	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 18:52:26 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1013	Fri Sep 24 18:52:39 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1021	Fri Sep 24 18:52:58 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1012	Fri Sep 24 18:53:24 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1013	Fri Sep 24 18:53:39 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1011	Fri Sep 24 18:54:00 1999
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.inl	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 18:54:17 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.inl,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1012	Fri Sep 24 18:54:30 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1009	Fri Sep 24 18:54:46 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.inl 	Status: Up-to-date

   Working revision:	1.1001	Fri Sep 24 18:54:55 1999
   Repository revision:	1.1001	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.inl,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1000)
	release-2-0-pre-charm-syntax	(revision: 1.1000)
	release-2-0              	(revision: 1.1000)
	release-2-0-beta-3       	(revision: 1.1000)
	release-2-0-beta-2       	(revision: 1.1000)
	release-alpha-1          	(revision: 1.1000)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeCylindricalBC.C	Status: Up-to-date

   Working revision:	1.9	Fri Sep 24 18:55:07 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ComputeCylindricalBC.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)

===================================================================
File: ComputeCylindricalBC.h	Status: Up-to-date

   Working revision:	1.7	Fri Sep 24 18:55:16 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputeCylindricalBC.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.5)
	development-4            	(revision: 1.5)

===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.18	Fri Sep 24 18:55:28 1999
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.17)
	release-2-0-pre-charm-syntax	(revision: 1.10)
	release-2-0              	(revision: 1.10)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ComputeDPME.h    	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 18:55:37 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeDPME.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ComputeDPMEMsgs.C	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 18:55:49 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeDPMEMsgs.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeDPMEMsgs.h	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 18:56:00 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeDPMEMsgs.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1061	Fri Sep 24 18:56:15 1999
   Repository revision:	1.1061	/Projects/namd2/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1054)
	release-2-0              	(revision: 1.1053)
	release-2-0-beta-3       	(revision: 1.1053)
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1020	Fri Sep 24 18:56:34 1999
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1017)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1014	Fri Sep 24 18:56:45 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1008	Fri Sep 24 18:57:24 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.inl	Status: Up-to-date

   Working revision:	1.1002	Fri Sep 24 18:57:42 1999
   Repository revision:	1.1002	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.inl,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1001)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.19	Fri Sep 24 18:57:53 1999
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.18)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.14)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.12)

===================================================================
File: ComputeFreeEnergy.h	Status: Up-to-date

   Working revision:	1.9	Fri Sep 24 18:58:02 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ComputeFreeEnergy.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.8)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1024	Fri Sep 24 18:58:12 1999
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1023)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1012)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirect.h	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 18:58:26 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirect.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirectBase.h	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 18:58:32 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirectBase.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeGeneral.C 	Status: Up-to-date

   Working revision:	1.1007	Fri Sep 24 18:58:45 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/ComputeGeneral.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1006)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGeneral.h 	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 18:58:59 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/ComputeGeneral.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.16	Fri Sep 24 18:59:09 1999
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeGlobal.h  	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 18:59:17 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ComputeGlobalEasy.C	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 18:59:22 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalEasy.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: ComputeGlobalEasy.h	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 18:59:30 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalEasy.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ComputeGlobalMaster.C	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 18:59:37 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMaster.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeGlobalMaster.h	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 18:59:45 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMaster.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeGlobalMsgs.C	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 18:59:53 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMsgs.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeGlobalMsgs.h	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 18:59:59 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMsgs.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ComputeHomeAtoms.h	Status: Up-to-date

   Working revision:	1.1003	Fri Sep 24 19:00:14 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/ComputeHomeAtoms.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1000)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.1008	Fri Sep 24 19:00:21 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatches.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.1008	Fri Sep 24 19:00:34 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatches.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1013	Fri Sep 24 19:00:48 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1008	Fri Sep 24 19:01:01 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1021	Fri Sep 24 19:01:22 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1013)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1018	Fri Sep 24 19:01:38 1999
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1030	Fri Sep 24 19:01:50 1999
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.ci    	Status: Up-to-date

   Working revision:	1.1008	Fri Sep 24 19:01:56 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1018	Fri Sep 24 19:02:11 1999
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1013)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMisc.h    	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 19:02:18 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeMisc.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1046	Fri Sep 24 19:02:40 1999
   Repository revision:	1.1046	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1024	Fri Sep 24 19:02:54 1999
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1023)
	release-2-0-pre-charm-syntax	(revision: 1.1021)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1021)
	release-alpha-1          	(revision: 1.1019)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.1007	Fri Sep 24 19:03:09 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedExcl.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1006)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1021	Fri Sep 24 19:03:27 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1010	Fri Sep 24 19:03:39 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1016	Fri Sep 24 19:03:53 1999
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.1009	Fri Sep 24 19:04:04 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1028	Fri Sep 24 19:04:19 1999
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1022	Fri Sep 24 19:04:34 1999
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1015	Fri Sep 24 19:04:48 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1014)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.1006	Fri Sep 24 19:43:54 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/ComputePatch.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1018	Fri Sep 24 19:05:35 1999
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.1008	Fri Sep 24 19:05:49 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/ComputePatchPair.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.7	Fri Sep 24 19:05:58 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 19:06:05 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputePmeMsgs.C 	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 19:06:14 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputePmeMsgs.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputePmeMsgs.h 	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 19:06:20 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputePmeMsgs.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputeRestraints.C	Status: Up-to-date

   Working revision:	1.9	Fri Sep 24 19:06:28 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ComputeRestraints.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeRestraints.h	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 19:06:36 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeRestraints.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.13	Fri Sep 24 19:06:44 1999
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: ComputeTcl.h     	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 19:06:50 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1010	Fri Sep 24 19:07:41 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ConfigList.h     	Status: Up-to-date

   Working revision:	1.1003	Fri Sep 24 19:12:58 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/ConfigList.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1084	Fri Sep 24 19:13:30 1999
   Repository revision:	1.1084	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1026	Fri Sep 24 19:13:41 1999
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Debug.h          	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 19:13:51 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/Debug.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: FreeEnergyLambdMgr.C	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 19:13:57 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/FreeEnergyLambdMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: FreeEnergyLambdMgr.h	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 19:14:04 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/FreeEnergyLambdMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: FreeEnergyLambda.C	Status: Up-to-date

   Working revision:	1.7	Fri Sep 24 19:14:11 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/FreeEnergyLambda.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: FreeEnergyLambda.h	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 19:14:21 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/FreeEnergyLambda.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: FreeEnergyParse.C	Status: Up-to-date

   Working revision:	1.7	Fri Sep 24 19:14:28 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/FreeEnergyParse.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyRMgr.C 	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 19:14:35 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyRMgr.h 	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 19:14:41 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: FreeEnergyRestrain.C	Status: Up-to-date

   Working revision:	1.7	Fri Sep 24 19:14:47 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRestrain.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: FreeEnergyRestrain.h	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 19:14:55 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRestrain.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyVector.C	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 19:15:00 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/FreeEnergyVector.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: HBondPairData.h  	Status: Up-to-date

   Working revision:	1.1002	Fri Sep 24 19:44:05 1999
   Repository revision:	1.1002	/Projects/namd2/cvsroot/namd2/src/HBondPairData.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1001)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: HBondParam.C     	Status: Up-to-date

   Working revision:	1.1003	Fri Sep 24 19:15:27 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/HBondParam.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: HBondParam.h     	Status: Up-to-date

   Working revision:	1.1003	Fri Sep 24 19:15:43 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/HBondParam.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1062	Fri Sep 24 20:20:42 1999
   Repository revision:	1.1062	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1022	Fri Sep 24 19:16:32 1999
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatchList.h  	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 19:16:40 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/HomePatchList.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: HomePatchTypes.h 	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 19:16:47 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/HomePatchTypes.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Hydrogen.h       	Status: Up-to-date

   Working revision:	1.9	Fri Sep 24 19:16:54 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/Hydrogen.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.6)

===================================================================
File: InfoStream.C     	Status: Up-to-date

   Working revision:	1.1003	Fri Sep 24 19:17:03 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/InfoStream.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 19:17:09 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/InfoStream.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Inform.C         	Status: Up-to-date

   Working revision:	1.1006	Fri Sep 24 19:17:16 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/Inform.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Inform.h         	Status: Up-to-date

   Working revision:	1.1003	Fri Sep 24 19:17:21 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/Inform.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IntList.h        	Status: Up-to-date

   Working revision:	1.1002	Fri Sep 24 19:17:41 1999
   Repository revision:	1.1002	/Projects/namd2/cvsroot/namd2/src/IntList.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1001)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.1008	Fri Sep 24 19:18:40 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/LJTable.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.h        	Status: Up-to-date

   Working revision:	1.1003	Fri Sep 24 19:18:48 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/LJTable.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1012	Fri Sep 24 19:18:56 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.ci	Status: Up-to-date

   Working revision:	1.7	Fri Sep 24 19:19:02 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.2)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.25	Fri Sep 24 19:19:14 1999
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.23)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)

===================================================================
File: LintList.h       	Status: Up-to-date

   Working revision:	1.1002	Fri Sep 24 19:19:29 1999
   Repository revision:	1.1002	/Projects/namd2/cvsroot/namd2/src/LintList.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1001)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MigrateAtomsMsg.C	Status: Up-to-date

   Working revision:	1.11	Fri Sep 24 19:19:36 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/MigrateAtomsMsg.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.7)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: MigrateAtomsMsg.h	Status: Up-to-date

   Working revision:	1.11	Fri Sep 24 19:19:43 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/MigrateAtomsMsg.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.1007	Fri Sep 24 19:19:54 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/Migration.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1038	Fri Sep 24 19:20:33 1999
   Repository revision:	1.1038	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1027	Fri Sep 24 19:20:55 1999
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.1013	Fri Sep 24 19:21:10 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/Namd.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.1014	Fri Sep 24 19:21:29 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/Namd.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.20	Fri Sep 24 19:21:40 1999
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.16)
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)

===================================================================
File: NamdOneTools.h   	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 19:21:47 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/NamdOneTools.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1020	Fri Sep 24 19:22:02 1999
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1010	Fri Sep 24 19:22:11 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1011	Fri Sep 24 19:22:38 1999
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1039	Fri Sep 24 19:23:01 1999
   Repository revision:	1.1039	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1010	Fri Sep 24 19:23:09 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1016	Fri Sep 24 19:23:23 1999
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.25	Fri Sep 24 19:23:47 1999
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Output.h         	Status: Up-to-date

   Working revision:	1.9	Fri Sep 24 19:26:00 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/Output.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)
	development-3            	(revision: 1.1)

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1010	Fri Sep 24 19:26:18 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.h            	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 19:31:30 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/PDB.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.C        	Status: Up-to-date

   Working revision:	1.1008	Fri Sep 24 19:31:42 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/PDBData.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.h        	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 19:32:01 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/PDBData.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1013	Fri Sep 24 19:32:15 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 19:32:27 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/Parameters.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1013	Fri Sep 24 19:32:39 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.h   	Status: Up-to-date

   Working revision:	1.1003	Fri Sep 24 19:32:47 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/ParseOptions.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1028	Fri Sep 24 19:33:09 1999
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1025)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1014	Fri Sep 24 19:33:23 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1012)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1023	Fri Sep 24 19:33:42 1999
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1015	Fri Sep 24 19:33:58 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1014)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.inl     	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 19:34:10 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/PatchMap.inl,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.1)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1020	Fri Sep 24 19:34:25 1999
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.ci      	Status: Up-to-date

   Working revision:	1.1007	Fri Sep 24 19:34:31 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/PatchMgr.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1006)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1014	Fri Sep 24 19:34:45 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.12	Fri Sep 24 19:34:53 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.8)
	development-4            	(revision: 1.8)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1027	Fri Sep 24 19:35:11 1999
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1023)
	release-2-0              	(revision: 1.1023)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1023)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.ci      	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 19:35:16 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1014	Fri Sep 24 19:35:28 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1022	Fri Sep 24 19:35:48 1999
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.h     	Status: Up-to-date

   Working revision:	1.1001	Fri Sep 24 19:35:57 1999
   Repository revision:	1.1001	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1000)
	release-2-0-pre-charm-syntax	(revision: 1.1000)
	release-2-0              	(revision: 1.1000)
	release-2-0-beta-3       	(revision: 1.1000)
	release-2-0-beta-2       	(revision: 1.1000)
	release-alpha-1          	(revision: 1.1000)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: RecBisection.C   	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 19:36:03 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/RecBisection.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)

===================================================================
File: RecBisection.h   	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 19:36:14 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/RecBisection.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1036	Fri Sep 24 19:36:29 1999
   Repository revision:	1.1036	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1035)
	release-2-0-pre-charm-syntax	(revision: 1.1031)
	release-2-0              	(revision: 1.1030)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1026)
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.ci  	Status: Up-to-date

   Working revision:	1.1007	Fri Sep 24 19:36:35 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1006)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1019	Fri Sep 24 19:36:45 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 19:36:52 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 19:36:59 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1074	Fri Sep 24 19:37:22 1999
   Repository revision:	1.1074	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1027	Fri Sep 24 19:37:37 1999
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1082	Fri Sep 24 19:38:43 1999
   Repository revision:	1.1082	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1046	Fri Sep 24 19:39:01 1999
   Repository revision:	1.1046	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: TestController.C 	Status: Up-to-date

   Working revision:	1.9	Fri Sep 24 19:39:10 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/TestController.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: TestController.h 	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 19:39:17 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/TestController.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: TestSequencer.C  	Status: Up-to-date

   Working revision:	1.9	Fri Sep 24 19:39:26 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/TestSequencer.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: TestSequencer.h  	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 19:39:31 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/TestSequencer.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 19:41:08 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/Vector.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1073	Fri Sep 24 19:41:44 1999
   Repository revision:	1.1073	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1009	Fri Sep 24 19:41:53 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1017	Fri Sep 24 19:42:01 1999
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1023	Fri Sep 24 19:42:11 1999
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1025	Fri Sep 24 19:42:27 1999
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1024)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.10	Fri Sep 24 19:42:35 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)

===================================================================
File: dcdlib.h         	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 19:42:41 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/dcdlib.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1019	Fri Sep 24 19:42:53 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 19:43:01 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/main.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.h           	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 19:43:08 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/main.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: strlib.C         	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 19:43:15 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/strlib.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: strlib.h         	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 19:43:24 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/strlib.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: structures.h     	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 19:43:32 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/structures.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file IntTree.C		Status: Up-to-date

   Working revision:	No entry for IntTree.C
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/Attic/IntTree.C,v

===================================================================
File: no file IntTree.h		Status: Up-to-date

   Working revision:	No entry for IntTree.h
   Repository revision:	1.1002	/Projects/namd2/cvsroot/namd2/src/Attic/IntTree.h,v

===================================================================
File: no file Trial.h		Status: Up-to-date

   Working revision:	No entry for Trial.h
   Repository revision:	1.1001	/Projects/namd2/cvsroot/namd2/src/Attic/Trial.h,v


****************************************
Date:	Friday September 24, 1999 @ 15:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	HomePatch.C HomePatch.h 
Log Message:
Eliminated ident element.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1063	Fri Sep 24 20:23:42 1999
   Repository revision:	1.1063	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1023	Fri Sep 24 20:23:50 1999
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 24, 1999 @ 15:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	TclCommands.C TclCommands.h 
Log Message:
Removed RCS information.


===================================================================
File: TclCommands.C    	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 20:31:23 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/TclCommands.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: TclCommands.h    	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 20:31:28 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/TclCommands.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Friday September 24, 1999 @ 16:20
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Make.depends 
Log Message:
Removed dead file LintList.h.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.43	Fri Sep 24 21:16:06 1999
   Repository revision:	1.43	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Friday September 24, 1999 @ 16:20
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Removed Files:
	LintList.h 
Log Message:
Removed dead file LintList.h.


===================================================================
File: no file LintList.h		Status: Up-to-date

   Working revision:	No entry for LintList.h
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/Attic/LintList.h,v


****************************************
Date:	Friday September 24, 1999 @ 17:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Alg7.h AlgSeven.C AtomMap.C AtomMap.h BOCgroup.h Box.h 
	BroadcastClient.C BroadcastClient.h BroadcastMgr.C 
	BroadcastMgr.ci BroadcastMgr.h BroadcastObject.h Broadcasts.h 
	CollectionMaster.C CollectionMaster.ci CollectionMaster.h 
	CollectionMgr.C CollectionMgr.ci CollectionMgr.h Communicate.C 
	Communicate.h Compute.C Compute.h ComputeAngles.C 
	ComputeAngles.h ComputeAngles.inl ComputeBonds.C 
	ComputeBonds.h ComputeBonds.inl ComputeCylindricalBC.C 
	ComputeCylindricalBC.h ComputeDPME.C ComputeDPME.h 
	ComputeDPMEMsgs.C ComputeDPMEMsgs.h ComputeDPMTA.C 
	ComputeDPMTA.h ComputeDihedrals.C ComputeDihedrals.h 
	ComputeDihedrals.inl ComputeFreeEnergy.C ComputeFreeEnergy.h 
	ComputeFullDirect.C ComputeFullDirect.h 
	ComputeFullDirectBase.h ComputeGeneral.C ComputeGeneral.h 
	ComputeGlobal.C ComputeGlobal.h ComputeGlobalEasy.C 
	ComputeGlobalEasy.h ComputeGlobalMaster.C 
	ComputeGlobalMaster.h ComputeGlobalMsgs.C ComputeGlobalMsgs.h 
	ComputeHomeAtoms.h ComputeHomePatches.C ComputeHomePatches.h 
	ComputeHomeTuples.h ComputeIMD.C ComputeIMD.h 
	ComputeImpropers.C ComputeImpropers.h ComputeMap.C 
	ComputeMap.h ComputeMgr.C ComputeMgr.ci ComputeMgr.h 
	ComputeMisc.C ComputeMisc.h ComputeNonbondedBase.h 
	ComputeNonbondedExcl.C ComputeNonbondedExcl.h 
	ComputeNonbondedPair.C ComputeNonbondedPair.h 
	ComputeNonbondedSelf.C ComputeNonbondedSelf.h 
	ComputeNonbondedSplitting.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h ComputePatch.C ComputePatch.h 
	ComputePatchPair.C ComputePatchPair.h ComputePme.C 
	ComputePme.h ComputePmeMsgs.C ComputePmeMsgs.h 
	ComputeRestraints.C ComputeRestraints.h ComputeSMD.C 
	ComputeSMD.h ComputeSphericalBC.C ComputeSphericalBC.h 
	ComputeTcl.C ComputeTcl.h ConfigList.C ConfigList.h 
	Controller.C Controller.h Debug.h FreeEnergyAssert.C 
	FreeEnergyAssert.h FreeEnergyEnums.h FreeEnergyGroup.C 
	FreeEnergyGroup.h FreeEnergyLambdMgr.C FreeEnergyLambdMgr.h 
	FreeEnergyLambda.C FreeEnergyLambda.h FreeEnergyMain.C 
	FreeEnergyParse.C FreeEnergyParse.h FreeEnergyRMgr.C 
	FreeEnergyRMgr.h FreeEnergyRestrain.C FreeEnergyRestrain.h 
	FreeEnergyVector.C FreeEnergyVector.h HBondPairData.h 
	HBondParam.C HBondParam.h HomePatch.C HomePatch.h 
	HomePatchList.h HomePatchTypes.h Hydrogen.h IMDOutput.C 
	IMDOutput.h InfoStream.C InfoStream.h Inform.C Inform.h 
	IntList.h LJTable.C LJTable.h Lattice.h LdbCoordinator.C 
	LdbCoordinator.ci LdbCoordinator.h MStream.C MStream.h 
	MigrateAtomsMsg.C MigrateAtomsMsg.h Migration.h Molecule.C 
	Molecule.h Namd.C Namd.h NamdOneTools.C NamdOneTools.h 
	NamdState.C NamdState.h NamdTypes.h Node.C Node.ci Node.h 
	ObjectArena.h Output.C Output.h OwnerBox.h PDB.C PDB.h 
	PDBData.C PDBData.h Parameters.C Parameters.h ParseOptions.C 
	ParseOptions.h Patch.C Patch.h PatchMap.C PatchMap.h 
	PatchMap.inl PatchMgr.C PatchMgr.ci PatchMgr.h PatchTypes.h 
	PmeBase.C PmeBase.h PmeCoulomb.C PmeCoulomb.h PmeFFT.C 
	PmeFFT.h PmeKSpace.C PmeKSpace.h PmeRealSpace.C PmeRealSpace.h 
	PositionBox.h PositionOwnerBox.h ProcessorPrivate.C 
	ProcessorPrivate.h ProxyMgr.C ProxyMgr.ci ProxyMgr.h 
	ProxyPatch.C ProxyPatch.h Queue.h Random.h Rebalancer.C 
	Rebalancer.h RecBisection.C RecBisection.h ReductionMgr.C 
	ReductionMgr.ci ReductionMgr.h RefineOnly.C RefineOnly.h 
	ResizeArray.h ResizeArrayIter.h ResizeArrayPrimIter.h 
	ResizeArrayRaw.h SMD.C SMD.h SMDMsgs.C SMDMsgs.h ScriptTcl.C 
	ScriptTcl.h Sequencer.C Sequencer.h Set.C Set.h 
	SimParameters.C SimParameters.h SortableResizeArray.h 
	SortedArray.h TclCommands.C TclCommands.h Tensor.h 
	TestController.C TestController.h TestSequencer.C 
	TestSequencer.h Thread.h UniqueSet.h UniqueSetIter.h 
	UniqueSetRaw.h UniqueSortedArray.h Vector.h VoidTree.C 
	VoidTree.h WorkDistrib.C WorkDistrib.ci WorkDistrib.h 
	ccsinterface.C ccsinterface.h common.C common.h dc.pl dcdlib.C 
	dcdlib.h defmain.C elements.h heap.C heap.h imd.C imd.h main.C 
	main.ci main.h packmsg.h pub3dfft.C pub3dfft.h strlib.C 
	strlib.h structures.h vmdsock.C vmdsock.h 
Log Message:
Cleaned up initial comments and copyright notice.


===================================================================
File: Alg7.h           	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 22:20:04 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Alg7.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.16	Fri Sep 24 22:18:49 1999
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1012	Fri Sep 24 22:18:50 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/AtomMap.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: AtomMap.h        	Status: Up-to-date

   Working revision:	1.1007	Fri Sep 24 22:20:04 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/AtomMap.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.1007	Fri Sep 24 22:20:04 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/BOCgroup.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Box.h            	Status: Up-to-date

   Working revision:	1.1003	Fri Sep 24 22:20:04 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/Box.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BroadcastClient.C	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:18:50 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/BroadcastClient.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: BroadcastClient.h	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 22:20:05 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/BroadcastClient.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: BroadcastMgr.C   	Status: Up-to-date

   Working revision:	1.12	Fri Sep 24 22:18:50 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/BroadcastMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.10)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.2)

===================================================================
File: BroadcastMgr.ci  	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:20:53 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/BroadcastMgr.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: BroadcastMgr.h   	Status: Up-to-date

   Working revision:	1.13	Fri Sep 24 22:20:05 1999
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/BroadcastMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)

===================================================================
File: BroadcastObject.h	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:20:05 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/BroadcastObject.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.8	Fri Sep 24 22:20:05 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1023	Fri Sep 24 22:18:50 1999
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.ci	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 22:20:54 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1019	Fri Sep 24 22:20:05 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1017	Fri Sep 24 22:18:50 1999
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.ci 	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 22:20:54 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1014	Fri Sep 24 22:20:05 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Communicate.C    	Status: Up-to-date

   Working revision:	1.1006	Fri Sep 24 22:18:50 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/Communicate.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Communicate.h    	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 22:20:06 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/Communicate.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1022	Fri Sep 24 22:18:51 1999
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1013	Fri Sep 24 22:20:06 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1014	Fri Sep 24 22:18:51 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1012	Fri Sep 24 22:20:06 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.inl	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 22:28:23 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.inl,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1013	Fri Sep 24 22:18:51 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1010	Fri Sep 24 22:20:06 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.inl 	Status: Up-to-date

   Working revision:	1.1002	Fri Sep 24 22:28:23 1999
   Repository revision:	1.1002	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.inl,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1000)
	release-2-0-pre-charm-syntax	(revision: 1.1000)
	release-2-0              	(revision: 1.1000)
	release-2-0-beta-3       	(revision: 1.1000)
	release-2-0-beta-2       	(revision: 1.1000)
	release-alpha-1          	(revision: 1.1000)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeCylindricalBC.C	Status: Up-to-date

   Working revision:	1.10	Fri Sep 24 22:18:51 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ComputeCylindricalBC.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)

===================================================================
File: ComputeCylindricalBC.h	Status: Up-to-date

   Working revision:	1.8	Fri Sep 24 22:20:06 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ComputeCylindricalBC.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.5)
	development-4            	(revision: 1.5)

===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.19	Fri Sep 24 22:18:51 1999
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.17)
	release-2-0-pre-charm-syntax	(revision: 1.10)
	release-2-0              	(revision: 1.10)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ComputeDPME.h    	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:20:06 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeDPME.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ComputeDPMEMsgs.C	Status: Up-to-date

   Working revision:	1.7	Fri Sep 24 22:18:52 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputeDPMEMsgs.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeDPMEMsgs.h	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:20:07 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeDPMEMsgs.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1062	Fri Sep 24 22:18:52 1999
   Repository revision:	1.1062	/Projects/namd2/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1054)
	release-2-0              	(revision: 1.1053)
	release-2-0-beta-3       	(revision: 1.1053)
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDPMTA.h   	Status: Up-to-date

   Working revision:	1.1021	Fri Sep 24 22:20:07 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/ComputeDPMTA.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1017)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1015	Fri Sep 24 22:18:52 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1009	Fri Sep 24 22:20:07 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.inl	Status: Up-to-date

   Working revision:	1.1003	Fri Sep 24 22:28:23 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.inl,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1001)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.20	Fri Sep 24 22:18:52 1999
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.18)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.14)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.12)

===================================================================
File: ComputeFreeEnergy.h	Status: Up-to-date

   Working revision:	1.10	Fri Sep 24 22:20:07 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ComputeFreeEnergy.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.8)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1025	Fri Sep 24 22:18:52 1999
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1023)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1012)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirect.h	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 22:20:07 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirect.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirectBase.h	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:20:07 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirectBase.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeGeneral.C 	Status: Up-to-date

   Working revision:	1.1008	Fri Sep 24 22:18:52 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/ComputeGeneral.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1006)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGeneral.h 	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 22:20:08 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/ComputeGeneral.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.17	Fri Sep 24 22:18:53 1999
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeGlobal.h  	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:20:08 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ComputeGlobalEasy.C	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:18:53 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalEasy.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: ComputeGlobalEasy.h	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:20:08 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalEasy.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ComputeGlobalMaster.C	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:18:53 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMaster.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeGlobalMaster.h	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:20:08 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMaster.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeGlobalMsgs.C	Status: Up-to-date

   Working revision:	1.7	Fri Sep 24 22:18:53 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMsgs.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeGlobalMsgs.h	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:20:08 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMsgs.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ComputeHomeAtoms.h	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 22:20:09 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/ComputeHomeAtoms.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1000)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.1009	Fri Sep 24 22:18:53 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatches.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.1009	Fri Sep 24 22:20:09 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatches.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1022	Fri Sep 24 22:20:09 1999
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:18:53 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ComputeIMD.h     	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:09 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1014	Fri Sep 24 22:18:53 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1009	Fri Sep 24 22:20:09 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1022	Fri Sep 24 22:18:54 1999
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1013)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1019	Fri Sep 24 22:20:09 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1031	Fri Sep 24 22:18:54 1999
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.ci    	Status: Up-to-date

   Working revision:	1.1009	Fri Sep 24 22:20:54 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1019	Fri Sep 24 22:20:10 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1013)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMisc.C    	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:18:54 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeMisc.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputeMisc.h    	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 22:20:10 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeMisc.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1047	Fri Sep 24 22:20:10 1999
   Repository revision:	1.1047	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1025	Fri Sep 24 22:18:54 1999
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1023)
	release-2-0-pre-charm-syntax	(revision: 1.1021)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1021)
	release-alpha-1          	(revision: 1.1019)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.1008	Fri Sep 24 22:20:10 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedExcl.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1006)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1022	Fri Sep 24 22:18:54 1999
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1011	Fri Sep 24 22:20:10 1999
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1017	Fri Sep 24 22:18:55 1999
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.1010	Fri Sep 24 22:20:10 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSplitting.h	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 22:20:11 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSplitting.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1029	Fri Sep 24 22:18:55 1999
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1023	Fri Sep 24 22:20:11 1999
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1016	Fri Sep 24 22:18:55 1999
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1014)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.1007	Fri Sep 24 22:20:11 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/ComputePatch.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1019	Fri Sep 24 22:18:55 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.1009	Fri Sep 24 22:20:11 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/ComputePatchPair.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.8	Fri Sep 24 22:18:55 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 22:20:11 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputePmeMsgs.C 	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:18:55 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputePmeMsgs.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputePmeMsgs.h 	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 22:20:11 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputePmeMsgs.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputeRestraints.C	Status: Up-to-date

   Working revision:	1.10	Fri Sep 24 22:18:56 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ComputeRestraints.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeRestraints.h	Status: Up-to-date

   Working revision:	1.7	Fri Sep 24 22:20:12 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputeRestraints.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:18:56 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeSMD.h     	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:12 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeSphericalBC.C	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 22:18:56 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeSphericalBC.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeSphericalBC.h	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:12 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeSphericalBC.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.14	Fri Sep 24 22:18:56 1999
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: ComputeTcl.h     	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:20:12 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1011	Fri Sep 24 22:18:56 1999
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ConfigList.h     	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 22:20:12 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/ConfigList.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1085	Fri Sep 24 22:18:56 1999
   Repository revision:	1.1085	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1027	Fri Sep 24 22:20:12 1999
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Debug.h          	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 22:20:13 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/Debug.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: FreeEnergyAssert.C	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:18:57 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/FreeEnergyAssert.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: FreeEnergyAssert.h	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:13 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/FreeEnergyAssert.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: FreeEnergyEnums.h	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 22:20:13 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/FreeEnergyEnums.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: FreeEnergyGroup.C	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 22:18:57 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/FreeEnergyGroup.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: FreeEnergyGroup.h	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:13 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/FreeEnergyGroup.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyLambdMgr.C	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:18:57 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/FreeEnergyLambdMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: FreeEnergyLambdMgr.h	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:20:13 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/FreeEnergyLambdMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: FreeEnergyLambda.C	Status: Up-to-date

   Working revision:	1.8	Fri Sep 24 22:18:57 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/FreeEnergyLambda.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: FreeEnergyLambda.h	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:20:13 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/FreeEnergyLambda.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: FreeEnergyMain.C 	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 22:18:57 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/FreeEnergyMain.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: FreeEnergyParse.C	Status: Up-to-date

   Working revision:	1.8	Fri Sep 24 22:18:57 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/FreeEnergyParse.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyParse.h	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:14 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/FreeEnergyParse.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: FreeEnergyRMgr.C 	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:18:58 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyRMgr.h 	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:20:14 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: FreeEnergyRestrain.C	Status: Up-to-date

   Working revision:	1.8	Fri Sep 24 22:18:58 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRestrain.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: FreeEnergyRestrain.h	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:20:14 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRestrain.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyVector.C	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 22:18:58 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/FreeEnergyVector.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: FreeEnergyVector.h	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 22:20:14 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/FreeEnergyVector.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: HBondPairData.h  	Status: Up-to-date

   Working revision:	1.1003	Fri Sep 24 22:20:14 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/HBondPairData.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1001)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: HBondParam.C     	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 22:18:58 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/HBondParam.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: HBondParam.h     	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 22:20:14 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/HBondParam.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1064	Fri Sep 24 22:18:58 1999
   Repository revision:	1.1064	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1024	Fri Sep 24 22:20:15 1999
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatchList.h  	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 22:20:15 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/HomePatchList.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: HomePatchTypes.h 	Status: Up-to-date

   Working revision:	1.1006	Fri Sep 24 22:20:15 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/HomePatchTypes.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Hydrogen.h       	Status: Up-to-date

   Working revision:	1.10	Fri Sep 24 22:20:15 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/Hydrogen.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.6)

===================================================================
File: IMDOutput.C      	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:18:58 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/IMDOutput.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)

===================================================================
File: IMDOutput.h      	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:20:15 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/IMDOutput.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: InfoStream.C     	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 22:18:59 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/InfoStream.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1006	Fri Sep 24 22:20:15 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/InfoStream.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Inform.C         	Status: Up-to-date

   Working revision:	1.1007	Fri Sep 24 22:18:59 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/Inform.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Inform.h         	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 22:20:15 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/Inform.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IntList.h        	Status: Up-to-date

   Working revision:	1.1003	Fri Sep 24 22:20:16 1999
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/IntList.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1001)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.1009	Fri Sep 24 22:18:59 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/LJTable.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.h        	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 22:20:16 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/LJTable.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1013	Fri Sep 24 22:20:16 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.38	Fri Sep 24 22:18:59 1999
   Repository revision:	1.38	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: LdbCoordinator.ci	Status: Up-to-date

   Working revision:	1.8	Fri Sep 24 22:20:54 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.2)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.26	Fri Sep 24 22:20:16 1999
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.23)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)

===================================================================
File: MStream.C        	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:18:59 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/MStream.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: MStream.h        	Status: Up-to-date

   Working revision:	1.8	Fri Sep 24 22:20:16 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/MStream.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.1)

===================================================================
File: MigrateAtomsMsg.C	Status: Up-to-date

   Working revision:	1.12	Fri Sep 24 22:18:59 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/MigrateAtomsMsg.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.7)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: MigrateAtomsMsg.h	Status: Up-to-date

   Working revision:	1.12	Fri Sep 24 22:20:16 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/MigrateAtomsMsg.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.1008	Fri Sep 24 22:20:17 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/Migration.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1039	Fri Sep 24 22:19:00 1999
   Repository revision:	1.1039	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1028	Fri Sep 24 22:20:17 1999
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.1014	Fri Sep 24 22:19:00 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/Namd.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.1015	Fri Sep 24 22:20:17 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/Namd.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.21	Fri Sep 24 22:19:00 1999
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.16)
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)

===================================================================
File: NamdOneTools.h   	Status: Up-to-date

   Working revision:	1.7	Fri Sep 24 22:20:17 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/NamdOneTools.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1021	Fri Sep 24 22:19:00 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1011	Fri Sep 24 22:20:17 1999
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1012	Fri Sep 24 22:20:17 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1040	Fri Sep 24 22:19:00 1999
   Repository revision:	1.1040	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1011	Fri Sep 24 22:20:54 1999
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1017	Fri Sep 24 22:20:18 1999
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ObjectArena.h    	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 22:20:18 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ObjectArena.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.26	Fri Sep 24 22:19:00 1999
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Output.h         	Status: Up-to-date

   Working revision:	1.10	Fri Sep 24 22:20:18 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/Output.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)
	development-3            	(revision: 1.1)

===================================================================
File: OwnerBox.h       	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:20:18 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/OwnerBox.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1011	Fri Sep 24 22:19:01 1999
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.h            	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 22:20:18 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/PDB.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.C        	Status: Up-to-date

   Working revision:	1.1009	Fri Sep 24 22:19:01 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/PDBData.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.h        	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 22:20:18 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/PDBData.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1014	Fri Sep 24 22:19:01 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 22:20:19 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/Parameters.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1014	Fri Sep 24 22:19:01 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.h   	Status: Up-to-date

   Working revision:	1.1004	Fri Sep 24 22:20:19 1999
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/ParseOptions.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1029	Fri Sep 24 22:19:01 1999
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1025)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1015	Fri Sep 24 22:20:19 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1012)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1024	Fri Sep 24 22:19:01 1999
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1016	Fri Sep 24 22:20:19 1999
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1014)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.inl     	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:28:23 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/PatchMap.inl,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.1)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1021	Fri Sep 24 22:19:02 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.ci      	Status: Up-to-date

   Working revision:	1.1008	Fri Sep 24 22:20:54 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/PatchMgr.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1006)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1015	Fri Sep 24 22:20:19 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.13	Fri Sep 24 22:20:19 1999
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.8)
	development-4            	(revision: 1.8)

===================================================================
File: PmeBase.C        	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:19:02 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/PmeBase.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeBase.h        	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:20 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/PmeBase.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeCoulomb.C     	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 22:19:02 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/PmeCoulomb.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: PmeCoulomb.h     	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:20 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/PmeCoulomb.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeFFT.C         	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:19:02 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/PmeFFT.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: PmeFFT.h         	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:20:20 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/PmeFFT.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)

===================================================================
File: PmeKSpace.C      	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:19:02 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/PmeKSpace.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeKSpace.h      	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:20 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/PmeKSpace.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeRealSpace.C   	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:19:02 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/PmeRealSpace.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeRealSpace.h   	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:20 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/PmeRealSpace.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PositionBox.h    	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 22:20:20 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/PositionBox.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionOwnerBox.h	Status: Up-to-date

   Working revision:	1.1010	Fri Sep 24 22:20:20 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/PositionOwnerBox.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: ProcessorPrivate.C	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 22:19:03 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ProcessorPrivate.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ProcessorPrivate.h	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:21 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ProcessorPrivate.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1028	Fri Sep 24 22:19:03 1999
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1023)
	release-2-0              	(revision: 1.1023)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1023)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.ci      	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 22:20:54 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1015	Fri Sep 24 22:20:21 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1023	Fri Sep 24 22:19:03 1999
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.h     	Status: Up-to-date

   Working revision:	1.1002	Fri Sep 24 22:20:21 1999
   Repository revision:	1.1002	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1000)
	release-2-0-pre-charm-syntax	(revision: 1.1000)
	release-2-0              	(revision: 1.1000)
	release-2-0-beta-3       	(revision: 1.1000)
	release-2-0-beta-2       	(revision: 1.1000)
	release-alpha-1          	(revision: 1.1000)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Queue.h          	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 22:20:21 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Queue.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: Random.h         	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 22:20:21 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/Random.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.22	Fri Sep 24 22:19:03 1999
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: Rebalancer.h     	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:20:21 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/Rebalancer.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: RecBisection.C   	Status: Up-to-date

   Working revision:	1.7	Fri Sep 24 22:19:03 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/RecBisection.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)

===================================================================
File: RecBisection.h   	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:22 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/RecBisection.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1037	Fri Sep 24 22:19:03 1999
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1035)
	release-2-0-pre-charm-syntax	(revision: 1.1031)
	release-2-0              	(revision: 1.1030)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1026)
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.ci  	Status: Up-to-date

   Working revision:	1.1008	Fri Sep 24 22:20:55 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1006)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1020	Fri Sep 24 22:20:22 1999
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: RefineOnly.C     	Status: Up-to-date

   Working revision:	1.7	Fri Sep 24 22:19:04 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/RefineOnly.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)

===================================================================
File: RefineOnly.h     	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 22:20:22 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/RefineOnly.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:20:22 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ResizeArray.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ResizeArrayIter.h	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 22:20:22 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ResizeArrayIter.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ResizeArrayPrimIter.h	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 22:20:22 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ResizeArrayPrimIter.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:20:22 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: SMD.C            	Status: Up-to-date

   Working revision:	1.12	Fri Sep 24 22:19:04 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/SMD.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: SMD.h            	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:20:23 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/SMD.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: SMDMsgs.C        	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:19:04 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/SMDMsgs.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: SMDMsgs.h        	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 22:20:23 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/SMDMsgs.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:19:04 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:20:23 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1075	Fri Sep 24 22:19:04 1999
   Repository revision:	1.1075	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1028	Fri Sep 24 22:20:23 1999
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Set.C            	Status: Up-to-date

   Working revision:	1.7	Fri Sep 24 22:19:04 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/Set.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.5)

===================================================================
File: Set.h            	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:20:23 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/Set.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1083	Fri Sep 24 22:19:05 1999
   Repository revision:	1.1083	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1047	Fri Sep 24 22:20:23 1999
   Repository revision:	1.1047	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SortableResizeArray.h	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:24 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/SortableResizeArray.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: SortedArray.h    	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:24 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/SortedArray.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: TclCommands.C    	Status: Up-to-date

   Working revision:	1.7	Fri Sep 24 22:19:05 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/TclCommands.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: TclCommands.h    	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:20:24 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/TclCommands.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: Tensor.h         	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 22:20:24 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Tensor.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)

===================================================================
File: TestController.C 	Status: Up-to-date

   Working revision:	1.10	Fri Sep 24 22:19:05 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/TestController.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: TestController.h 	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:24 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/TestController.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: TestSequencer.C  	Status: Up-to-date

   Working revision:	1.10	Fri Sep 24 22:19:05 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/TestSequencer.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: TestSequencer.h  	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:24 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/TestSequencer.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: Thread.h         	Status: Up-to-date

   Working revision:	1.6	Fri Sep 24 22:20:24 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/Thread.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: UniqueSet.h      	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 22:20:25 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/UniqueSet.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: UniqueSetIter.h  	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:25 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/UniqueSetIter.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: UniqueSetRaw.h   	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:25 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/UniqueSetRaw.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: UniqueSortedArray.h	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:25 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/UniqueSortedArray.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.1006	Fri Sep 24 22:20:25 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/Vector.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: VoidTree.C       	Status: Up-to-date

   Working revision:	1.1001	Fri Sep 24 22:19:05 1999
   Repository revision:	1.1001	/Projects/namd2/cvsroot/namd2/src/VoidTree.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1000)
	release-2-0-pre-charm-syntax	(revision: 1.1000)
	release-2-0              	(revision: 1.1000)
	release-2-0-beta-3       	(revision: 1.1000)
	release-2-0-beta-2       	(revision: 1.1000)
	release-alpha-1          	(revision: 1.1000)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: VoidTree.h       	Status: Up-to-date

   Working revision:	1.1001	Fri Sep 24 22:20:25 1999
   Repository revision:	1.1001	/Projects/namd2/cvsroot/namd2/src/VoidTree.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1000)
	release-2-0-pre-charm-syntax	(revision: 1.1000)
	release-2-0              	(revision: 1.1000)
	release-2-0-beta-3       	(revision: 1.1000)
	release-2-0-beta-2       	(revision: 1.1000)
	release-alpha-1          	(revision: 1.1000)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1074	Fri Sep 24 22:19:05 1999
   Repository revision:	1.1074	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1010	Fri Sep 24 22:20:55 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1018	Fri Sep 24 22:20:26 1999
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ccsinterface.C   	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:19:06 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ccsinterface.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ccsinterface.h   	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:26 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ccsinterface.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1024	Fri Sep 24 22:19:06 1999
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1026	Fri Sep 24 22:20:26 1999
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1024)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dc.pl            	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 21:59:00 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/dc.pl,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.11	Fri Sep 24 22:19:06 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)

===================================================================
File: dcdlib.h         	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:20:26 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/dcdlib.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)

===================================================================
File: defmain.C        	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 22:19:06 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/defmain.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: elements.h       	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 22:20:26 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/elements.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: heap.C           	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:19:06 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/heap.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: heap.h           	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 22:20:26 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/heap.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: imd.C            	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 22:19:06 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/imd.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: imd.h            	Status: Up-to-date

   Working revision:	1.5	Fri Sep 24 22:20:27 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/imd.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1020	Fri Sep 24 22:19:07 1999
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.1005	Fri Sep 24 22:20:55 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/main.ci,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.h           	Status: Up-to-date

   Working revision:	1.1006	Fri Sep 24 22:20:27 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/main.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: packmsg.h        	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:27 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/packmsg.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pub3dfft.C       	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 22:19:07 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/pub3dfft.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: pub3dfft.h       	Status: Up-to-date

   Working revision:	1.2	Fri Sep 24 22:20:27 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/pub3dfft.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)

===================================================================
File: strlib.C         	Status: Up-to-date

   Working revision:	1.1006	Fri Sep 24 22:19:07 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/strlib.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: strlib.h         	Status: Up-to-date

   Working revision:	1.1006	Fri Sep 24 22:20:27 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/strlib.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: structures.h     	Status: Up-to-date

   Working revision:	1.1006	Fri Sep 24 22:20:27 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/structures.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: vmdsock.C        	Status: Up-to-date

   Working revision:	1.4	Fri Sep 24 22:19:07 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/vmdsock.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: vmdsock.h        	Status: Up-to-date

   Working revision:	1.3	Fri Sep 24 22:20:27 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/vmdsock.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Monday September 27, 1999 @ 10:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	config 
Log Message:
No longer lists CVS as a build architecture.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.8	Mon Sep 27 15:00:35 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Monday September 27, 1999 @ 14:40
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/pvm3
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/pvm3

Removed Files:
	nodes nodes.atm 
Log Message:
Eliminated old unused notes files.


===================================================================
File: no file nodes		Status: Up-to-date

   Working revision:	No entry for nodes
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/pvm3/Attic/nodes,v

===================================================================
File: no file nodes.atm		Status: Up-to-date

   Working revision:	No entry for nodes.atm
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/pvm3/Attic/nodes.atm,v


****************************************
Date:	Monday September 27, 1999 @ 14:52
Author:	justin

Update of /Projects/namd2/cvsroot/namd2/src
In directory asuncion.ks.uiuc.edu:/Projects/r5/bioinfo/justin/namd2/src

Modified Files:
	ComputeSMD.C ComputeSMD.h SimParameters.C SimParameters.h 
Log Message:
Added 'SMDProjectForce' option, which when activated causes SMD forces to
be applied only along the pulling direction.



===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.7	Mon Sep 27 15:08:52 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeSMD.h     	Status: Up-to-date

   Working revision:	1.4	Mon Sep 27 05:51:39 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1084	Mon Sep 27 15:59:07 1999
   Repository revision:	1.1084	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1048	Mon Sep 27 05:52:08 1999
   Repository revision:	1.1048	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 27, 1999 @ 15:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Fixed maximumMove default with minimization on.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1085	Mon Sep 27 20:20:47 1999
   Repository revision:	1.1085	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 27, 1999 @ 15:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Verlet I MTS scheme is no longer reported as a warning.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1086	Mon Sep 27 20:56:33 1999
   Repository revision:	1.1086	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 29, 1999 @ 16:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	common.C 
Log Message:
Added newline to NAMD_die arg for both stout and sterr.


===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1025	Wed Sep 29 21:43:49 1999
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 29, 1999 @ 16:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Parameters.C 
Log Message:
Recognizes nbon as well as nonb in CHARMM format parameter files.


===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1015	Wed Sep 29 20:55:50 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 29, 1999 @ 16:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Detects CHARMM formatted psf files (and says so in the error message).


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1040	Wed Sep 29 21:33:30 1999
   Repository revision:	1.1040	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 30, 1999 @ 13:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Fixed exclusion of all atoms within hydrogen group even if excude none or 1-2.
Now forces splitPatch to position for exclude none or 1-2.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1087	Thu Sep 30 16:22:56 1999
   Repository revision:	1.1087	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 30, 1999 @ 15:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedSelf.C 
Log Message:
Fixed bug where if only last atom on patch was not fixed self calc
would act as if all atoms were fixed.  Now i_upper is numAtoms too.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1048	Thu Sep 30 19:58:58 1999
   Repository revision:	1.1048	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1018	Thu Sep 30 19:36:26 1999
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday October 4, 1999 @ 14:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	announce.txt license.txt 
Added Files:
	README.txt 
Log Message:
Updated language and added README.


===================================================================
File: README.txt       	Status: Up-to-date

   Working revision:	1.1	Mon Oct  4 19:25:26 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/README.txt,v

   Existing Tags:
	No Tags Exist

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.3	Mon Oct  4 19:20:06 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: license.txt      	Status: Up-to-date

   Working revision:	1.2	Mon Oct  4 19:24:22 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/license.txt,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)


****************************************
Date:	Tuesday October 5, 1999 @ 12:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Random.h 
Log Message:
Fixed accumulator overflows in 48-bit arithmetic code.  Should work on T3E.


===================================================================
File: Random.h         	Status: Up-to-date

   Working revision:	1.5	Tue Oct  5 16:45:08 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/Random.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Wednesday October 6, 1999 @ 12:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	SimParameters.C SimParameters.h 
Log Message:
Added outputPressure parameter to print pressures.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1088	Wed Oct  6 15:02:38 1999
   Repository revision:	1.1088	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1049	Wed Oct  6 15:00:41 1999
   Repository revision:	1.1049	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 6, 1999 @ 13:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/cvsbuild/namd2/src

Modified Files:
	Controller.C 
Log Message:
Added outputPressure parameter to print pressures.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1086	Wed Oct  6 17:59:57 1999
   Repository revision:	1.1086	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 6, 1999 @ 13:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputeAngles.C ComputeAngles.h ComputeBonds.C ComputeBonds.h 
	ComputeDihedrals.C ComputeDihedrals.h ComputeFullDirect.C 
	ComputeFullDirectBase.h ComputeImpropers.C ComputeImpropers.h 
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h ComputePme.C Controller.C Controller.h 
	HomePatch.C HomePatch.h ReductionMgr.h Sequencer.C Tensor.h 
Log Message:
Calculates full pressure tensor.


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1015	Tue Oct  5 20:56:47 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1013	Tue Oct  5 20:12:18 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1014	Tue Oct  5 20:59:55 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1011	Tue Oct  5 21:01:06 1999
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1016	Tue Oct  5 21:04:26 1999
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1010	Tue Oct  5 21:01:44 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1026	Tue Oct  5 21:19:02 1999
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1023)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1012)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeFullDirectBase.h	Status: Up-to-date

   Working revision:	1.7	Tue Oct  5 21:17:43 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirectBase.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1015	Tue Oct  5 21:06:36 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1010	Tue Oct  5 21:02:16 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1049	Tue Oct  5 21:42:40 1999
   Repository revision:	1.1049	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1030	Tue Oct  5 21:25:27 1999
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1024	Tue Oct  5 21:26:32 1999
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.9	Tue Oct  5 21:46:27 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1087	Wed Oct  6 18:19:49 1999
   Repository revision:	1.1087	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1028	Tue Oct  5 22:29:43 1999
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1065	Wed Oct  6 00:53:14 1999
   Repository revision:	1.1065	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1025	Wed Oct  6 00:37:04 1999
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1021	Wed Oct  6 00:12:22 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1076	Wed Oct  6 15:58:04 1999
   Repository revision:	1.1076	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Tensor.h         	Status: Up-to-date

   Working revision:	1.3	Wed Oct  6 17:42:47 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/Tensor.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1)


****************************************
Date:	Wednesday October 6, 1999 @ 13:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputeDPME.C ComputeDPMTA.C 
Log Message:
Calculates full pressure tensor.


===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.20	Wed Oct  6 18:28:06 1999
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.17)
	release-2-0-pre-charm-syntax	(revision: 1.10)
	release-2-0              	(revision: 1.10)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1063	Wed Oct  6 18:30:06 1999
   Repository revision:	1.1063	/Projects/namd2/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1054)
	release-2-0              	(revision: 1.1053)
	release-2-0-beta-3       	(revision: 1.1053)
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)


****************************************
Date:	Wednesday October 6, 1999 @ 13:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/ug

Modified Files:
	ug_io.tex 
Log Message:
Documented outputPressure.


===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.12	Wed Oct  6 18:43:07 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Wednesday October 6, 1999 @ 14:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/ug

Modified Files:
	namd_copyright.tex namd_version.tex 
Log Message:
Updated with new license for 2.1.


===================================================================
File: namd_copyright.tex	Status: Up-to-date

   Working revision:	1.7	Wed Oct  6 19:35:08 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/ug/namd_copyright.tex,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: namd_version.tex 	Status: Up-to-date

   Working revision:	1.5	Wed Oct  6 18:51:19 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/ug/namd_version.tex,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Wednesday October 6, 1999 @ 15:01
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C 
Log Message:
Eliminated vectors (parens and commas) in xst and xsc files.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1088	Wed Oct  6 19:53:15 1999
   Repository revision:	1.1088	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 6, 1999 @ 16:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/ug

Modified Files:
	Makefile ug_add.tex ug_basic.tex ug_intro.tex 
Log Message:
Various doc updates for 2.1.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.8	Wed Oct  6 19:14:59 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.21	Wed Oct  6 20:56:41 1999
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.10	Wed Oct  6 20:41:47 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.10	Wed Oct  6 21:06:00 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Wednesday October 6, 1999 @ 16:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	config 
Log Message:
Eliminated many links.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.9	Mon Sep 27 15:47:58 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Wednesday October 6, 1999 @ 17:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/cvsbuild/namd2

Modified Files:
	Make.depends 
Log Message:
Updated Make.depends.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.44	Wed Oct  6 21:29:56 1999
   Repository revision:	1.44	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Thursday October 7, 1999 @ 11:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	NamdState.C main.C 
Log Message:
Made some error messages nicer.


===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1022	Thu Oct  7 16:25:14 1999
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1021	Thu Oct  7 16:28:52 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday October 7, 1999 @ 14:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C 
Log Message:
Cleaned up benchmark time per step.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1089	Thu Oct  7 18:56:20 1999
   Repository revision:	1.1089	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday October 7, 1999 @ 14:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Output.C 
Log Message:
Fixed bug that prevented writing output files when firstTimeStep != 0
because of use of 0 as semaphore to write output files.


===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.27	Thu Oct  7 19:11:00 1999
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday October 7, 1999 @ 15:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Prints last energy when exiting due to unstable simulation.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1077	Thu Oct  7 19:21:21 1999
   Repository revision:	1.1077	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday October 7, 1999 @ 15:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C Namd.C 
Log Message:
Moved days per ns output from exit to benchmark timings.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1090	Thu Oct  7 19:52:21 1999
   Repository revision:	1.1090	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.1015	Thu Oct  7 20:42:01 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/Namd.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday October 7, 1999 @ 21:29
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/ug

Modified Files:
	Makefile ug.tex ug_basic.tex 
Log Message:
Now works with LaTeX 2e and can produce PDF files.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.9	Fri Oct  8 02:21:09 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ug.tex           	Status: Up-to-date

   Working revision:	1.5	Fri Oct  8 02:29:36 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/ug/ug.tex,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.11	Fri Oct  8 01:56:30 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Thursday October 7, 1999 @ 21:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug/figures
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/ug/figures

Removed Files:
	anglelist.eps dihelist.eps dpmta.eps implist.eps 
	patch_assignment.eps patch_comm.eps sphere_combo.eps 
	sphere_single.eps 
Log Message:
Eliminated old, unused figures.


===================================================================
File: no file anglelist.eps		Status: Up-to-date

   Working revision:	No entry for anglelist.eps
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/ug/figures/Attic/anglelist.eps,v

===================================================================
File: no file dihelist.eps		Status: Up-to-date

   Working revision:	No entry for dihelist.eps
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/ug/figures/Attic/dihelist.eps,v

===================================================================
File: no file dpmta.eps		Status: Up-to-date

   Working revision:	No entry for dpmta.eps
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/ug/figures/Attic/dpmta.eps,v

===================================================================
File: no file implist.eps		Status: Up-to-date

   Working revision:	No entry for implist.eps
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/ug/figures/Attic/implist.eps,v

===================================================================
File: no file patch_assignment.eps		Status: Up-to-date

   Working revision:	No entry for patch_assignment.eps
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/ug/figures/Attic/patch_assignment.eps,v

===================================================================
File: no file patch_comm.eps		Status: Up-to-date

   Working revision:	No entry for patch_comm.eps
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/ug/figures/Attic/patch_comm.eps,v

===================================================================
File: no file sphere_combo.eps		Status: Up-to-date

   Working revision:	No entry for sphere_combo.eps
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/ug/figures/Attic/sphere_combo.eps,v

===================================================================
File: no file sphere_single.eps		Status: Up-to-date

   Working revision:	No entry for sphere_single.eps
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/ug/figures/Attic/sphere_single.eps,v


****************************************
Date:	Thursday October 7, 1999 @ 21:55
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Allowed zero timestep simulations, useful for file conversion.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1089	Fri Oct  8 02:48:45 1999
   Repository revision:	1.1089	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday October 7, 1999 @ 21:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/ug

Modified Files:
	Makefile 
Log Message:
Updated version number.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.10	Fri Oct  8 02:57:51 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Thursday October 7, 1999 @ 22:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/ug

Modified Files:
	namd_version.tex 
Log Message:
Added Justin to authors list.


===================================================================
File: namd_version.tex 	Status: Up-to-date

   Working revision:	1.6	Fri Oct  8 03:18:47 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/ug/namd_version.tex,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday October 7, 1999 @ 23:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputeGlobal.C ComputeHomePatches.h HomePatch.h 
Log Message:
ComputeGlobal now deals with periodicity correctly.


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.18	Fri Oct  8 04:30:26 1999
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.1010	Fri Oct  8 03:54:24 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatches.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1026	Fri Oct  8 03:56:56 1999
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday October 8, 1999 @ 0:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputePatch.C ComputePatch.h ComputeSMD.C ComputeSMD.h 
Log Message:
SMD should now handle periodicity correctly.  Untested.


===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1017	Fri Oct  8 04:59:31 1999
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1014)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.1008	Fri Oct  8 04:56:53 1999
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/ComputePatch.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.8	Fri Oct  8 05:07:43 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeSMD.h     	Status: Up-to-date

   Working revision:	1.5	Fri Oct  8 05:03:09 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Friday October 8, 1999 @ 0:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Make.depends 
Log Message:
Changed Patch.h to HomePatch.h in a bunch of places.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.45	Fri Oct  8 05:23:34 1999
   Repository revision:	1.45	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Friday October 8, 1999 @ 9:59
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	notes.txt 
Log Message:
Clarified information on Tcl and FFTW.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.6	Fri Oct  8 14:55:48 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday October 8, 1999 @ 10:42
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Makefile 
Log Message:
Cleaned up CCS compilation.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1088	Fri Oct  8 15:05:33 1999
   Repository revision:	1.1088	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday October 8, 1999 @ 10:42
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/arch

Modified Files:
	Makearch.HPUX Makearch.KCC-i486 Makearch.Origin2000 
	Makearch.Origin2000-MPI Makearch.RED Makearch.SP3 
	Makearch.Solaris Makearch.T3E Makearch.alpha Makearch.exemplar 
	Makearch.g++-alpha Makearch.g++-i486 Makearch.template 
Log Message:
Cleaned up CCS compilation.


===================================================================
File: Makearch.HPUX    	Status: Up-to-date

   Working revision:	1.5	Fri Oct  8 15:20:51 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Makearch.HPUX,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.15	Fri Oct  8 15:22:17 1999
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.13)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.28	Fri Oct  8 15:22:23 1999
   Repository revision:	1.28	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.26)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.15)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Origin2000-MPI	Status: Up-to-date

   Working revision:	1.10	Fri Oct  8 15:20:51 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000-MPI,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.1)

===================================================================
File: Makearch.RED     	Status: Up-to-date

   Working revision:	1.9	Fri Oct  8 15:20:51 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/arch/Makearch.RED,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.1)

===================================================================
File: Makearch.SP3     	Status: Up-to-date

   Working revision:	1.13	Fri Oct  8 15:20:51 1999
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/arch/Makearch.SP3,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.20	Fri Oct  8 15:20:51 1999
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.12)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.17	Fri Oct  8 15:20:51 1999
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.16)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.10)
	release-2-0-beta-2       	(revision: 1.10)
	release-alpha-1          	(revision: 1.4)

===================================================================
File: Makearch.alpha   	Status: Up-to-date

   Working revision:	1.9	Fri Oct  8 15:22:29 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/arch/Makearch.alpha,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.7)

===================================================================
File: Makearch.exemplar	Status: Up-to-date

   Working revision:	1.11	Fri Oct  8 15:20:51 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/arch/Makearch.exemplar,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.10)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: Makearch.g++-alpha	Status: Up-to-date

   Working revision:	1.7	Fri Oct  8 15:20:51 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Makearch.g++-alpha,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: Makearch.g++-i486	Status: Up-to-date

   Working revision:	1.10	Fri Oct  8 15:20:51 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/arch/Makearch.g++-i486,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)

===================================================================
File: Makearch.template	Status: Up-to-date

   Working revision:	1.11	Fri Oct  8 15:20:51 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/arch/Makearch.template,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.10)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Friday October 8, 1999 @ 10:42
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C Node.C ccsinterface.C ccsinterface.h 
Log Message:
Cleaned up CCS compilation, eliminated messages.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1091	Fri Oct  8 15:30:25 1999
   Repository revision:	1.1091	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1041	Fri Oct  8 15:07:32 1999
   Repository revision:	1.1041	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ccsinterface.C   	Status: Up-to-date

   Working revision:	1.4	Fri Oct  8 15:32:02 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ccsinterface.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ccsinterface.h   	Status: Up-to-date

   Working revision:	1.4	Fri Oct  8 15:07:51 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ccsinterface.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Friday October 8, 1999 @ 10:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ccsinterface.C 
Log Message:
Eliminated warnings.


===================================================================
File: ccsinterface.C   	Status: Up-to-date

   Working revision:	1.5	Fri Oct  8 15:44:15 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ccsinterface.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Friday October 8, 1999 @ 11:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Separated ComputeHomePatch from ComputePatch.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.46	Fri Oct  8 16:04:47 1999
   Repository revision:	1.46	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1089	Fri Oct  8 16:02:36 1999
   Repository revision:	1.1089	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday October 8, 1999 @ 11:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputePatch.C ComputePatch.h ComputeSMD.h 
Added Files:
	ComputeHomePatch.C ComputeHomePatch.h 
Log Message:
Separated ComputeHomePatch from ComputePatch.


===================================================================
File: ComputeHomePatch.C	Status: Up-to-date

   Working revision:	1.1	Fri Oct  8 16:27:28 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatch.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeHomePatch.h	Status: Up-to-date

   Working revision:	1.1	Fri Oct  8 15:55:52 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatch.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1018	Fri Oct  8 16:01:38 1999
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1014)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.1009	Fri Oct  8 15:53:40 1999
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/ComputePatch.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeSMD.h     	Status: Up-to-date

   Working revision:	1.6	Fri Oct  8 16:04:15 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.h,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Friday October 8, 1999 @ 14:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
Pressure now calculated correctly by MOLLY.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1066	Fri Oct  8 18:37:17 1999
   Repository revision:	1.1066	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday October 8, 1999 @ 14:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	main.C 
Log Message:
Updated version to 2.1b2, removed warning message.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1022	Fri Oct  8 19:24:33 1999
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday October 8, 1999 @ 15:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	README.txt announce.txt notes.txt 
Log Message:
Updated version to 2.1b2.


===================================================================
File: README.txt       	Status: Up-to-date

   Working revision:	1.2	Fri Oct  8 20:03:09 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/README.txt,v

   Existing Tags:
	No Tags Exist

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.4	Fri Oct  8 20:03:42 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.7	Fri Oct  8 20:03:57 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday October 8, 1999 @ 17:12
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	announce.txt 
Log Message:
Shortened line longer than 72 chars.


===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.5	Fri Oct  8 22:11:51 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Monday October 11, 1999 @ 15:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory naiad.ks.uiuc.edu:/tmp/namd2/src

Modified Files:
	LJTable.C 
Log Message:
Fixed divide by zero when epsilon was zero for nbfix parameter.


===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.1010	Mon Oct 11 19:20:25 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/LJTable.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday October 11, 1999 @ 16:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	main.C 
Log Message:
Added warning about FFTW and redistribution.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1023	Mon Oct 11 21:13:50 1999
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday October 14, 1999 @ 10:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Fixed initialTemp not initialized with minimization.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1090	Thu Oct 14 15:30:25 1999
   Repository revision:	1.1090	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday October 14, 1999 @ 18:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputeHomePatch.C ComputePatch.C Controller.C MStream.C 
	Patch.C common.C common.h 
Log Message:
Replaced NAMD_die calls with NAMD_bug where appropriate.


===================================================================
File: ComputeHomePatch.C	Status: Up-to-date

   Working revision:	1.2	Thu Oct 14 23:54:29 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatch.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1019	Thu Oct 14 23:54:46 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1014)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1092	Thu Oct 14 23:55:30 1999
   Repository revision:	1.1092	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MStream.C        	Status: Up-to-date

   Working revision:	1.7	Thu Oct 14 23:55:45 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/MStream.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1030	Thu Oct 14 23:50:57 1999
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1029)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1025)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1026	Thu Oct 14 23:50:24 1999
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1027	Thu Oct 14 23:41:30 1999
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1024)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday October 14, 1999 @ 22:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory oberon.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	MStream.C MStream.h 
Log Message:
Added checksum to messages.


===================================================================
File: MStream.C        	Status: Up-to-date

   Working revision:	1.8	Fri Oct 15 03:13:50 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/MStream.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: MStream.h        	Status: Up-to-date

   Working revision:	1.9	Fri Oct 15 01:33:42 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/MStream.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Friday October 15, 1999 @ 17:07
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ConfigList.C 
Log Message:
Added "source <filename>" capability!


===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1012	Fri Oct 15 22:04:09 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday October 16, 1999 @ 17:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Cleaned up intVirial code.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1078	Fri Oct 15 04:34:19 1999
   Repository revision:	1.1078	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday October 17, 1999 @ 14:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Make.depends 
Log Message:
Added Tcl scripting.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.47	Sun Oct 17 19:30:06 1999
   Repository revision:	1.47	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Sunday October 17, 1999 @ 14:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ConfigList.C ConfigList.h Namd.C Namd.h NamdState.C 
	NamdState.h Node.C Node.ci Node.h ScriptTcl.C ScriptTcl.h 
	SimParameters.C main.C 
Log Message:
Added Tcl scripting.  Not perfect but it works.


===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1013	Sat Oct 16 23:03:50 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ConfigList.h     	Status: Up-to-date

   Working revision:	1.1005	Sat Oct 16 23:05:15 1999
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/ConfigList.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.1016	Sun Oct 17 00:46:29 1999
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/Namd.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Namd.h           	Status: Up-to-date

   Working revision:	1.1016	Sun Oct 17 00:34:13 1999
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/Namd.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1023	Sun Oct 17 18:06:10 1999
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1012	Sun Oct 17 00:25:00 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1042	Sun Oct 17 18:03:02 1999
   Repository revision:	1.1042	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1012	Sun Oct 17 00:43:58 1999
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1018	Sun Oct 17 19:34:33 1999
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.7	Sun Oct 17 19:18:42 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.6	Sun Oct 17 00:47:53 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1091	Sun Oct 17 19:14:26 1999
   Repository revision:	1.1091	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1024	Sun Oct 17 00:26:59 1999
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday October 19, 1999 @ 10:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputeFreeEnergy.C ComputeGlobalEasy.C ComputeTcl.C 
	ConfigList.C 
Log Message:
Fixed up free energy, misc, and tcl forces to work with Tcl config parser.


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.21	Sun Oct 17 20:56:51 1999
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.20)
	release-2-1-beta-1       	(revision: 1.18)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.14)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.12)

===================================================================
File: ComputeGlobalEasy.C	Status: Up-to-date

   Working revision:	1.6	Sun Oct 17 20:54:58 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalEasy.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.15	Sun Oct 17 20:49:51 1999
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.14)
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1014	Tue Oct 19 15:34:49 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday October 19, 1999 @ 11:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ScriptTcl.C 
Log Message:
Tcl config parser now handles = and # in existing config files.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.8	Tue Oct 19 16:09:41 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Wednesday October 20, 1999 @ 9:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C Controller.h NamdState.h ScriptTcl.C ScriptTcl.h 
	TestController.C TestController.h 
Log Message:
ScriptTcl and Controller now run in the same thread.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1093	Tue Oct 19 21:08:32 1999
   Repository revision:	1.1093	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1029	Tue Oct 19 21:01:32 1999
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1013	Tue Oct 19 18:22:37 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.9	Tue Oct 19 21:36:07 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.7	Tue Oct 19 21:22:15 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: TestController.C 	Status: Up-to-date

   Working revision:	1.11	Tue Oct 19 18:32:17 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/TestController.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: TestController.h 	Status: Up-to-date

   Working revision:	1.4	Tue Oct 19 18:32:02 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/TestController.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Wednesday October 20, 1999 @ 9:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	NamdState.h 
Log Message:
Fixed compile without Tcl.


===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1014	Wed Oct 20 14:47:52 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday October 21, 1999 @ 18:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Make.depends 
Log Message:
Added callbacks from controller to Tcl.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.48	Thu Oct 21 23:42:44 1999
   Repository revision:	1.48	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Thursday October 21, 1999 @ 18:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C ScriptTcl.C ScriptTcl.h Tensor.h Vector.h 
Log Message:
Added callbacks from controller to Tcl.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1094	Thu Oct 21 23:32:33 1999
   Repository revision:	1.1094	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.10	Thu Oct 21 23:30:09 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.8	Thu Oct 21 23:29:41 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: Tensor.h         	Status: Up-to-date

   Working revision:	1.4	Thu Oct 21 18:59:54 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/Tensor.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.1)

===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.1007	Thu Oct 21 19:43:20 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/Vector.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday October 22, 1999 @ 10:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Fixed uninitialized tclForcesOn w/o NAMD_TCL.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1092	Fri Oct 22 15:42:05 1999
   Repository revision:	1.1092	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday October 22, 1999 @ 11:38
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Parameters.C Parameters.h 
Log Message:
Eliminated repeated warnings about wildcard parameters.


===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1016	Fri Oct 22 16:33:23 1999
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.1006	Fri Oct 22 16:09:07 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/Parameters.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday October 22, 1999 @ 11:53
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	NamdState.C 
Log Message:
Now prints total mass and charge of system.


===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1024	Fri Oct 22 16:49:41 1999
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday October 22, 1999 @ 15:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C Controller.h Output.C Sequencer.C dcdlib.C 
Log Message:
Reworked a bunch of output.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1095	Fri Oct 22 19:47:49 1999
   Repository revision:	1.1095	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1030	Fri Oct 22 19:13:37 1999
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.28	Fri Oct 22 18:42:24 1999
   Repository revision:	1.28	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1079	Fri Oct 22 19:04:50 1999
   Repository revision:	1.1079	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.12	Fri Oct 22 18:42:32 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Sunday October 24, 1999 @ 11:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet.ks.uiuc.edu:/tmp/cvs-serv12732

Modified Files:
	common.C common.h 
Log Message:
Added method for backing up an existing file instead of overwriting.


===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1027	Sun Oct 24 16:22:49 1999
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1028	Sun Oct 24 16:22:49 1999
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1024)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday October 24, 1999 @ 11:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C 
Log Message:
Now uses NAMD_backup_file.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1096	Sun Oct 24 16:27:28 1999
   Repository revision:	1.1096	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday October 24, 1999 @ 11:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	CollectionMaster.C CollectionMaster.ci CollectionMaster.h 
	CollectionMgr.C CollectionMgr.h Output.C Output.h 
Log Message:
Eliminated unused and untested force output code.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1024	Sun Oct 24 16:30:06 1999
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.ci	Status: Up-to-date

   Working revision:	1.1006	Sun Oct 24 16:31:12 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.ci,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1020	Sun Oct 24 16:30:17 1999
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1018	Sun Oct 24 16:33:23 1999
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1015	Sun Oct 24 16:33:11 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.29	Sun Oct 24 16:28:41 1999
   Repository revision:	1.29	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Output.h         	Status: Up-to-date

   Working revision:	1.11	Sun Oct 24 16:26:56 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/Output.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)
	development-3            	(revision: 1.1)


****************************************
Date:	Sunday October 24, 1999 @ 12:01
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	CollectionMgr.h 
Log Message:
Eliminated unused and untested force output code.


===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1016	Sun Oct 24 17:01:03 1999
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday October 24, 1999 @ 12:40
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Broadcasts.h Controller.C ScriptTcl.C Sequencer.C 
Log Message:
Added symbolic names for script commands passed to Controller and Sequencer.


===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.9	Sun Oct 24 17:29:19 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1097	Sun Oct 24 17:14:24 1999
   Repository revision:	1.1097	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.11	Sun Oct 24 17:21:19 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1080	Sun Oct 24 17:17:06 1999
   Repository revision:	1.1080	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday October 24, 1999 @ 14:00
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C Controller.h Sequencer.C Sequencer.h 
Log Message:
Cleaned up algorithm(), now loops have same form.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1098	Sun Oct 24 18:55:33 1999
   Repository revision:	1.1098	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1031	Sun Oct 24 18:51:48 1999
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1081	Sun Oct 24 18:52:29 1999
   Repository revision:	1.1081	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1029	Sun Oct 24 18:51:59 1999
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday October 24, 1999 @ 16:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C Output.C Output.h Sequencer.C 
Log Message:
Cleaned up and fixed logic for trajectory, restart, and output files
so that it should now work with scripting.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1099	Sun Oct 24 21:01:36 1999
   Repository revision:	1.1099	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.30	Sun Oct 24 20:50:14 1999
   Repository revision:	1.30	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Output.h         	Status: Up-to-date

   Working revision:	1.12	Sun Oct 24 20:28:11 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/Output.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)
	development-3            	(revision: 1.1)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1082	Sun Oct 24 19:20:24 1999
   Repository revision:	1.1082	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday October 25, 1999 @ 9:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet.ks.uiuc.edu:/tmp/cvs-serv10256

Modified Files:
	dcdlib.C 
Log Message:
Now updates header information as-you-go after each frame written.


===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.13	Mon Oct 25 14:09:40 1999
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Monday October 25, 1999 @ 10:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	README.txt announce.txt notes.txt 
Log Message:
Updated for 2.1b3 and Tcl scripting language interface.


===================================================================
File: README.txt       	Status: Up-to-date

   Working revision:	1.3	Mon Oct 25 15:42:36 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/README.txt,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.2)

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.6	Mon Oct 25 15:46:38 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.8	Mon Oct 25 15:39:50 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Monday October 25, 1999 @ 10:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	main.C 
Log Message:
Updated for 2.1b3 release.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1025	Mon Oct 25 15:51:34 1999
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday October 25, 1999 @ 15:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C Output.C common.C common.h 
Log Message:
Disposable files now renamed to .old instead of .BAK.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1100	Mon Oct 25 20:25:39 1999
   Repository revision:	1.1100	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.31	Mon Oct 25 20:25:02 1999
   Repository revision:	1.31	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1028	Mon Oct 25 20:22:52 1999
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1029	Mon Oct 25 20:22:15 1999
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1024)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday October 25, 1999 @ 16:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Makefile 
Log Message:
Added ability to "make release".


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1090	Mon Oct 25 21:32:44 1999
   Repository revision:	1.1090	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday October 25, 1999 @ 16:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/arch

Modified Files:
	Makearch.HPUX Makearch.KCC-i486 Makearch.Origin2000 
	Makearch.Origin2000-MPI Makearch.RED Makearch.SP3 
	Makearch.Solaris Makearch.T3E Makearch.alpha Makearch.exemplar 
	Makearch.g++-alpha Makearch.g++-i486 Makearch.template 
Log Message:
Added ability to "make release".


===================================================================
File: Makearch.HPUX    	Status: Up-to-date

   Working revision:	1.6	Mon Oct 25 21:31:09 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Makearch.HPUX,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.16	Mon Oct 25 21:26:57 1999
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.15)
	release-2-1-beta-2       	(revision: 1.15)
	release-2-1-beta-1       	(revision: 1.13)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: Makearch.Origin2000	Status: Up-to-date

   Working revision:	1.29	Mon Oct 25 21:29:11 1999
   Repository revision:	1.29	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.28)
	release-2-1-beta-2       	(revision: 1.28)
	release-2-1-beta-1       	(revision: 1.26)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.15)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Origin2000-MPI	Status: Up-to-date

   Working revision:	1.11	Mon Oct 25 21:08:55 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/arch/Makearch.Origin2000-MPI,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.1)

===================================================================
File: Makearch.RED     	Status: Up-to-date

   Working revision:	1.10	Mon Oct 25 21:30:17 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/arch/Makearch.RED,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.1)

===================================================================
File: Makearch.SP3     	Status: Up-to-date

   Working revision:	1.14	Mon Oct 25 21:31:19 1999
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/arch/Makearch.SP3,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.13)
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.Solaris 	Status: Up-to-date

   Working revision:	1.21	Mon Oct 25 21:26:32 1999
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/arch/Makearch.Solaris,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.20)
	release-2-1-beta-2       	(revision: 1.20)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.12)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Makearch.T3E     	Status: Up-to-date

   Working revision:	1.18	Mon Oct 25 21:09:53 1999
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/arch/Makearch.T3E,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.17)
	release-2-1-beta-2       	(revision: 1.17)
	release-2-1-beta-1       	(revision: 1.16)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.10)
	release-2-0-beta-2       	(revision: 1.10)
	release-alpha-1          	(revision: 1.4)

===================================================================
File: Makearch.alpha   	Status: Up-to-date

   Working revision:	1.10	Mon Oct 25 21:26:23 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/arch/Makearch.alpha,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.7)

===================================================================
File: Makearch.exemplar	Status: Up-to-date

   Working revision:	1.12	Mon Oct 25 21:10:20 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/arch/Makearch.exemplar,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.10)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: Makearch.g++-alpha	Status: Up-to-date

   Working revision:	1.8	Mon Oct 25 21:10:31 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/arch/Makearch.g++-alpha,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: Makearch.g++-i486	Status: Up-to-date

   Working revision:	1.11	Mon Oct 25 21:10:39 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/arch/Makearch.g++-i486,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)

===================================================================
File: Makearch.template	Status: Up-to-date

   Working revision:	1.12	Mon Oct 25 21:11:00 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/arch/Makearch.template,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.10)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Tuesday October 26, 1999 @ 11:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputeTcl.C ScriptTcl.C 
Log Message:
Quick fixed suggested by Mark O'Donohue.


===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.16	Tue Oct 26 15:42:51 1999
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.15)
	release-2-1-beta-2       	(revision: 1.14)
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.12	Tue Oct 26 14:30:20 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Tuesday October 26, 1999 @ 16:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C 
Log Message:
Formatting avoids overwriting string buffer by limiting values to +/- 10^12.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1101	Tue Oct 26 20:58:27 1999
   Repository revision:	1.1101	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday October 26, 1999 @ 16:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	HomePatch.C SimParameters.C SimParameters.h 
Log Message:
Doesn't die during SHAKE if param rigidDieOnError is off (default is on).


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1067	Tue Oct 26 20:31:49 1999
   Repository revision:	1.1067	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1093	Tue Oct 26 18:59:54 1999
   Repository revision:	1.1093	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1050	Tue Oct 26 19:00:21 1999
   Repository revision:	1.1050	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday October 26, 1999 @ 17:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C Output.C SimParameters.C SimParameters.h 
Log Message:
Now has default names for trajectory and output files based on outputname.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1102	Tue Oct 26 21:56:40 1999
   Repository revision:	1.1102	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.32	Tue Oct 26 21:48:29 1999
   Repository revision:	1.32	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1094	Tue Oct 26 22:42:00 1999
   Repository revision:	1.1094	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1051	Tue Oct 26 21:15:27 1999
   Repository revision:	1.1051	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday October 26, 1999 @ 18:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Eliminated a bunch of unnecessary code for dealing with cwd.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1095	Tue Oct 26 23:00:51 1999
   Repository revision:	1.1095	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 27, 1999 @ 12:00
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	NamdOneTools.C NamdOneTools.h WorkDistrib.C 
Log Message:
Now reads other-endian binary files, unless atom count is palindromic base 256.


===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.22	Wed Oct 27 16:56:06 1999
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.16)
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)

===================================================================
File: NamdOneTools.h   	Status: Up-to-date

   Working revision:	1.8	Wed Oct 27 16:01:24 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/NamdOneTools.h,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1075	Wed Oct 27 15:51:32 1999
   Repository revision:	1.1075	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 27, 1999 @ 12:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C 
Log Message:
Fixed up XSC file writing to work with non-periodic systems.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1103	Wed Oct 27 17:09:30 1999
   Repository revision:	1.1103	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 27, 1999 @ 15:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	packmsg.h 
Log Message:
Added checksum to packed messages.


===================================================================
File: packmsg.h        	Status: Up-to-date

   Working revision:	1.4	Wed Oct 27 20:10:24 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/packmsg.h,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)


****************************************
Date:	Friday October 29, 1999 @ 9:38
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/arch

Modified Files:
	Makearch.KCC-i486 Makearch.g++-i486 
Log Message:
egcs to gcc


===================================================================
File: Makearch.KCC-i486	Status: Up-to-date

   Working revision:	1.17	Thu Oct 28 15:28:34 1999
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/arch/Makearch.KCC-i486,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.15)
	release-2-1-beta-2       	(revision: 1.15)
	release-2-1-beta-1       	(revision: 1.13)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: Makearch.g++-i486	Status: Up-to-date

   Working revision:	1.12	Thu Oct 28 15:28:01 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/arch/Makearch.g++-i486,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)


****************************************
Date:	Friday October 29, 1999 @ 13:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory tirana.ks.uiuc.edu:/tmp/namd2/arch

Modified Files:
	Makearch.HPUX 
Added Files:
	Makearch.HPUX-aCC Makearch.HPUX-g++ 
Log Message:
New compilers for HPUX.


===================================================================
File: Makearch.HPUX-aCC	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 18:08:09 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Makearch.HPUX-aCC,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.HPUX-g++	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 18:07:46 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Makearch.HPUX-g++,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makearch.HPUX    	Status: Up-to-date

   Working revision:	1.7	Fri Oct 29 18:07:00 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Makearch.HPUX,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Friday October 29, 1999 @ 13:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	packmsg.h 
Log Message:
Turned off checksums now that Converse is fixed.


===================================================================
File: packmsg.h        	Status: Up-to-date

   Working revision:	1.5	Fri Oct 29 17:05:37 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/packmsg.h,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)


****************************************
Date:	Friday October 29, 1999 @ 17:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Makefile config 
Log Message:
Revamped config and make system.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1091	Fri Oct 29 19:30:28 1999
   Repository revision:	1.1091	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.10	Fri Oct 29 21:59:25 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Friday October 29, 1999 @ 17:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/arch

Added Files:
	ASCI-Red.arch ASCI-Red.base HPUX-CC.arch HPUX-aCC.arch 
	HPUX-g++.arch HPUX.base HPUX.fftw HPUX.tcl IBM-SP.arch 
	IBM-SP.base Linux-i686-KCC.arch Linux-i686-g++.arch 
	Linux-i686.base Linux-i686.fftw Linux-i686.tcl 
	Origin2000-CC.arch Origin2000-MPI-CC.arch Origin2000.base 
	Origin2000.fftw Origin2000.tcl Solaris-Sparc-CC.arch 
	Solaris-Sparc-g++.arch Solaris-Sparc.base Solaris-Sparc.fftw 
	Solaris-Sparc.tcl Solaris-i686-g++.arch Solaris-i686.base 
	T3E-CC.arch T3E.base T3E.fftw T3E.tcl Tru64-Alpha-CC.arch 
	Tru64-Alpha-g++.arch Tru64-Alpha.base Tru64-Alpha.fftw 
	Tru64-Alpha.tcl 
Removed Files:
	Makearch.HPUX Makearch.HPUX-aCC Makearch.HPUX-g++ 
	Makearch.KCC-i486 Makearch.Origin2000 Makearch.Origin2000-MPI 
	Makearch.RED Makearch.SP3 Makearch.Solaris Makearch.T3E 
	Makearch.alpha Makearch.exemplar Makearch.g++-alpha 
	Makearch.g++-i486 Makearch.template 
Log Message:
Revamped config and make system.


===================================================================
File: ASCI-Red.arch    	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:45:48 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/ASCI-Red.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ASCI-Red.base    	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 20:34:15 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/ASCI-Red.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX-CC.arch     	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 22:10:05 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX-CC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX-aCC.arch    	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 22:10:56 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX-aCC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX-g++.arch    	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 22:09:01 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX-g++.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX.base        	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 20:24:52 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX.fftw        	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:35:39 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX.tcl         	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:34:50 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX.tcl,v

   Existing Tags:
	No Tags Exist

===================================================================
File: IBM-SP.arch      	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:46:20 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: IBM-SP.base      	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 20:33:53 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-KCC.arch	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:41:42 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-KCC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-g++.arch	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:45:11 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-g++.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686.base  	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 20:24:55 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686.fftw  	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:35:42 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686.tcl   	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:34:53 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.tcl,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Origin2000-CC.arch	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:42:09 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Origin2000-CC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Origin2000-MPI-CC.arch	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 20:08:00 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Origin2000-MPI-CC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Origin2000.base  	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 20:24:59 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Origin2000.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Origin2000.fftw  	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:36:11 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Origin2000.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Origin2000.tcl   	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:35:10 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Origin2000.tcl,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Solaris-Sparc-CC.arch	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:46:30 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc-CC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Solaris-Sparc-g++.arch	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:46:35 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc-g++.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Solaris-Sparc.base	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 20:25:01 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Solaris-Sparc.fftw	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:36:27 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Solaris-Sparc.tcl	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:35:25 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc.tcl,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Solaris-i686-g++.arch	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:44:11 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Solaris-i686-g++.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Solaris-i686.base	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 20:25:05 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Solaris-i686.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: T3E-CC.arch      	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:56:44 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/T3E-CC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: T3E.base         	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 20:25:36 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/T3E.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: T3E.fftw         	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:56:57 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/T3E.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: T3E.tcl          	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:57:09 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/T3E.tcl,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Tru64-Alpha-CC.arch	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:46:44 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-CC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Tru64-Alpha-g++.arch	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 19:46:50 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-g++.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Tru64-Alpha.base 	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 20:31:05 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Tru64-Alpha.fftw 	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 20:32:08 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Tru64-Alpha.tcl  	Status: Up-to-date

   Working revision:	1.1	Fri Oct 29 20:33:16 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha.tcl,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file Makearch.HPUX		Status: Up-to-date

   Working revision:	No entry for Makearch.HPUX
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.HPUX,v

===================================================================
File: no file Makearch.HPUX-aCC		Status: Up-to-date

   Working revision:	No entry for Makearch.HPUX-aCC
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.HPUX-aCC,v

===================================================================
File: no file Makearch.HPUX-g++		Status: Up-to-date

   Working revision:	No entry for Makearch.HPUX-g++
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.HPUX-g++,v

===================================================================
File: no file Makearch.KCC-i486		Status: Up-to-date

   Working revision:	No entry for Makearch.KCC-i486
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.KCC-i486,v

===================================================================
File: no file Makearch.Origin2000		Status: Up-to-date

   Working revision:	No entry for Makearch.Origin2000
   Repository revision:	1.30	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.Origin2000,v

===================================================================
File: no file Makearch.Origin2000-MPI		Status: Up-to-date

   Working revision:	No entry for Makearch.Origin2000-MPI
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.Origin2000-MPI,v

===================================================================
File: no file Makearch.RED		Status: Up-to-date

   Working revision:	No entry for Makearch.RED
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.RED,v

===================================================================
File: no file Makearch.SP3		Status: Up-to-date

   Working revision:	No entry for Makearch.SP3
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.SP3,v

===================================================================
File: no file Makearch.Solaris		Status: Up-to-date

   Working revision:	No entry for Makearch.Solaris
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.Solaris,v

===================================================================
File: no file Makearch.T3E		Status: Up-to-date

   Working revision:	No entry for Makearch.T3E
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.T3E,v

===================================================================
File: no file Makearch.alpha		Status: Up-to-date

   Working revision:	No entry for Makearch.alpha
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.alpha,v

===================================================================
File: no file Makearch.exemplar		Status: Up-to-date

   Working revision:	No entry for Makearch.exemplar
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.exemplar,v

===================================================================
File: no file Makearch.g++-alpha		Status: Up-to-date

   Working revision:	No entry for Makearch.g++-alpha
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.g++-alpha,v

===================================================================
File: no file Makearch.g++-i486		Status: Up-to-date

   Working revision:	No entry for Makearch.g++-i486
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.g++-i486,v

===================================================================
File: no file Makearch.template		Status: Up-to-date

   Working revision:	No entry for Makearch.template
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/arch/Attic/Makearch.template,v


****************************************
Date:	Friday October 29, 1999 @ 17:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/dpme2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/dpme2

Modified Files:
	Makefile 
Log Message:
Revamped config and make system.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.17	Fri Oct 29 18:38:37 1999
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.16)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.13)
	release-2-0-beta-2       	(revision: 1.12)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.5)


****************************************
Date:	Friday October 29, 1999 @ 17:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/dpmta-2.6
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/dpmta-2.6

Modified Files:
	Makefile 
Log Message:
Revamped config and make system.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.5	Fri Oct 29 22:18:54 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/dpmta-2.6/Makefile,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Friday October 29, 1999 @ 17:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/pvm3
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/pvm3

Modified Files:
	Makefile 
Log Message:
Revamped config and make system.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.15	Fri Oct 29 21:51:32 1999
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/pvm3/Makefile,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.14)
	release-2-1-beta-2       	(revision: 1.14)
	release-2-1-beta-1       	(revision: 1.14)
	release-2-0-pre-charm-syntax	(revision: 1.13)
	release-2-0              	(revision: 1.13)
	release-2-0-beta-3       	(revision: 1.13)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.11)
	development-3            	(revision: 1.1)


****************************************
Date:	Friday October 29, 1999 @ 17:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Makefile README.txt announce.txt notes.txt 
Log Message:
Updated version number to 2.1b4.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1092	Fri Oct 29 22:31:28 1999
   Repository revision:	1.1092	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: README.txt       	Status: Up-to-date

   Working revision:	1.4	Fri Oct 29 22:22:41 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/README.txt,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.2)

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.7	Fri Oct 29 22:23:25 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.9	Fri Oct 29 22:27:25 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday October 29, 1999 @ 17:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	main.C 
Log Message:
Updated version number to 2.1b4.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1026	Fri Oct 29 22:32:01 1999
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday October 30, 1999 @ 13:20
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	notes.txt 
Log Message:
Updated with new build method.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.10	Sat Oct 30 18:18:25 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Saturday October 30, 1999 @ 13:34
Author:	justin

Update of /Projects/namd2/cvsroot/namd2/src
In directory thalassa.ks.uiuc.edu:/tmp_mnt/Projects/r5/bioinfo/justin/namd2/src

Modified Files:
	ComputeSMD.C 
Log Message:
Fixed the very broken projectForces part of ComputeSMD.  Still need to 
make it work for an exponent other than 2, but there's currently no demand
for it.  The old SMD part is unchanged.


===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.9	Sat Oct 30 18:15:40 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Saturday October 30, 1999 @ 15:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Makefile 
Log Message:
Fixed "make release" for Solaris.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1093	Sat Oct 30 20:29:49 1999
   Repository revision:	1.1093	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday November 1, 1999 @ 16:49
Author:	jim

Update of /Projects/namd2/cvsroot/fftw
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw-2.1.2

Log Message:
Import of FFTW 2.1.2

Status:

Vendor Tag:	fftw_org
Release Tags:	fftw_2_1_2
		
N fftw/Makefile.in
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/Makefile.in,v: No such file or directory
N fftw/README
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/README,v: No such file or directory
N fftw/AUTHORS
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/AUTHORS,v: No such file or directory
N fftw/COPYING
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/COPYING,v: No such file or directory
N fftw/ChangeLog
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/ChangeLog,v: No such file or directory
N fftw/INSTALL
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/INSTALL,v: No such file or directory
N fftw/Makefile.am
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/Makefile.am,v: No such file or directory
N fftw/NEWS
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/NEWS,v: No such file or directory
N fftw/TODO
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/TODO,v: No such file or directory
N fftw/acinclude.m4
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/acinclude.m4,v: No such file or directory
N fftw/aclocal.m4
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/aclocal.m4,v: No such file or directory
N fftw/config.guess
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/config.guess,v: No such file or directory
N fftw/config.sub
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/config.sub,v: No such file or directory
N fftw/configure
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/configure,v: No such file or directory
N fftw/configure.in
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/configure.in,v: No such file or directory
N fftw/install-sh
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/install-sh,v: No such file or directory
N fftw/ltconfig
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/ltconfig,v: No such file or directory
N fftw/ltmain.sh
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/ltmain.sh,v: No such file or directory
N fftw/missing
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/missing,v: No such file or directory
N fftw/mkinstalldirs
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/mkinstalldirs,v: No such file or directory
N fftw/README.hacks
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/README.hacks,v: No such file or directory
N fftw/bootstrap.sh
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/bootstrap.sh,v: No such file or directory
N fftw/COPYRIGHT
cvs: ERROR: cannot write file /Projects/namd2/cvsroot/fftw/COPYRIGHT,v: No such file or directory
cvs: ERROR: cannot mkdir /Projects/namd2/cvsroot/fftw/fftw -- not added: No such file or directory
cvs: ERROR: cannot mkdir /Projects/namd2/cvsroot/fftw/rfftw -- not added: No such file or directory
cvs: ERROR: cannot mkdir /Projects/namd2/cvsroot/fftw/tests -- not added: No such file or directory
cvs: ERROR: cannot mkdir /Projects/namd2/cvsroot/fftw/doc -- not added: No such file or directory
cvs: ERROR: cannot mkdir /Projects/namd2/cvsroot/fftw/threads -- not added: No such file or directory
cvs: ERROR: cannot mkdir /Projects/namd2/cvsroot/fftw/mpi -- not added: No such file or directory
cvs: ERROR: cannot mkdir /Projects/namd2/cvsroot/fftw/fortran -- not added: No such file or directory
cvs: ERROR: cannot mkdir /Projects/namd2/cvsroot/fftw/gensrc -- not added: No such file or directory
cvs: ERROR: cannot mkdir /Projects/namd2/cvsroot/fftw/matlab -- not added: No such file or directory
cvs: ERROR: cannot mkdir /Projects/namd2/cvsroot/fftw/cilk -- not added: No such file or directory
cvs: ERROR: cannot mkdir /Projects/namd2/cvsroot/fftw/FAQ -- not added: No such file or directory

No conflicts created by this import


[input file was '-']

****************************************
Date:	Monday November 1, 1999 @ 16:52
Author:	jim

Update of /Projects/namd2/cvsroot/fftw
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw-2.1.2

Log Message:
Import of FFTW 2.1.2

Status:

Vendor Tag:	fftw_org
Release Tags:	fftw_2_1_2
		
N fftw/Makefile.in
N fftw/README
N fftw/AUTHORS
N fftw/COPYING
N fftw/ChangeLog
N fftw/INSTALL
N fftw/Makefile.am
N fftw/NEWS
N fftw/TODO
N fftw/acinclude.m4
N fftw/aclocal.m4
N fftw/config.guess
N fftw/config.sub
N fftw/configure
N fftw/configure.in
N fftw/install-sh
N fftw/ltconfig
N fftw/ltmain.sh
N fftw/missing
N fftw/mkinstalldirs
N fftw/README.hacks
N fftw/bootstrap.sh
N fftw/COPYRIGHT
N fftw/fftw/Makefile.in
N fftw/fftw/stamp-h1.in
N fftw/fftw/stamp-h2.in
N fftw/fftw/Makefile.am
N fftw/fftw/config.h.in
N fftw/fftw/fftw.h.in
N fftw/fftw/fn_1.c
N fftw/fftw/fn_2.c
N fftw/fftw/fn_3.c
N fftw/fftw/fn_4.c
N fftw/fftw/fn_5.c
N fftw/fftw/fn_6.c
N fftw/fftw/fn_7.c
N fftw/fftw/fn_8.c
N fftw/fftw/fn_9.c
N fftw/fftw/fn_10.c
N fftw/fftw/fn_11.c
N fftw/fftw/fn_12.c
N fftw/fftw/fn_13.c
N fftw/fftw/fn_14.c
N fftw/fftw/fn_15.c
N fftw/fftw/fn_16.c
N fftw/fftw/fn_32.c
N fftw/fftw/fn_64.c
N fftw/fftw/ftw_2.c
N fftw/fftw/ftw_3.c
N fftw/fftw/ftw_4.c
N fftw/fftw/ftw_5.c
N fftw/fftw/ftw_6.c
N fftw/fftw/ftw_7.c
N fftw/fftw/ftw_8.c
N fftw/fftw/ftw_9.c
N fftw/fftw/ftw_10.c
N fftw/fftw/ftw_16.c
N fftw/fftw/ftw_32.c
N fftw/fftw/ftw_64.c
N fftw/fftw/fni_1.c
N fftw/fftw/fni_2.c
N fftw/fftw/fni_3.c
N fftw/fftw/fni_4.c
N fftw/fftw/fni_5.c
N fftw/fftw/fni_6.c
N fftw/fftw/fni_7.c
N fftw/fftw/fni_8.c
N fftw/fftw/fni_9.c
N fftw/fftw/fni_10.c
N fftw/fftw/fni_11.c
N fftw/fftw/fni_12.c
N fftw/fftw/fni_13.c
N fftw/fftw/fni_14.c
N fftw/fftw/fni_15.c
N fftw/fftw/fni_16.c
N fftw/fftw/fni_32.c
N fftw/fftw/fni_64.c
N fftw/fftw/ftwi_2.c
N fftw/fftw/ftwi_3.c
N fftw/fftw/ftwi_4.c
N fftw/fftw/ftwi_5.c
N fftw/fftw/ftwi_6.c
N fftw/fftw/ftwi_7.c
N fftw/fftw/ftwi_8.c
N fftw/fftw/ftwi_9.c
N fftw/fftw/ftwi_10.c
N fftw/fftw/ftwi_16.c
N fftw/fftw/ftwi_32.c
N fftw/fftw/ftwi_64.c
N fftw/fftw/timer.c
N fftw/fftw/config.c
N fftw/fftw/planner.c
N fftw/fftw/twiddle.c
N fftw/fftw/executor.c
N fftw/fftw/generic.c
N fftw/fftw/fftwnd.c
N fftw/fftw/malloc.c
N fftw/fftw/wisdom.c
N fftw/fftw/wisdomio.c
N fftw/fftw/putils.c
N fftw/fftw/rader.c
N fftw/fftw/fftwf77.c
N fftw/fftw/f77_func.h
N fftw/fftw/fftw.h
N fftw/fftw/fftw-int.h
N fftw/fftw/config.h
N fftw/rfftw/Makefile.in
N fftw/rfftw/Makefile.am
N fftw/rfftw/frc_1.c
N fftw/rfftw/frc_2.c
N fftw/rfftw/frc_3.c
N fftw/rfftw/frc_4.c
N fftw/rfftw/frc_5.c
N fftw/rfftw/frc_6.c
N fftw/rfftw/frc_7.c
N fftw/rfftw/frc_8.c
N fftw/rfftw/frc_9.c
N fftw/rfftw/frc_10.c
N fftw/rfftw/frc_11.c
N fftw/rfftw/frc_12.c
N fftw/rfftw/frc_13.c
N fftw/rfftw/frc_14.c
N fftw/rfftw/frc_15.c
N fftw/rfftw/frc_16.c
N fftw/rfftw/frc_32.c
N fftw/rfftw/frc_64.c
N fftw/rfftw/frc_128.c
N fftw/rfftw/fhf_2.c
N fftw/rfftw/fhf_3.c
N fftw/rfftw/fhf_4.c
N fftw/rfftw/fhf_5.c
N fftw/rfftw/fhf_6.c
N fftw/rfftw/fhf_7.c
N fftw/rfftw/fhf_8.c
N fftw/rfftw/fhf_9.c
N fftw/rfftw/fhf_10.c
N fftw/rfftw/fhf_16.c
N fftw/rfftw/fhf_32.c
N fftw/rfftw/fcr_1.c
N fftw/rfftw/fcr_2.c
N fftw/rfftw/fcr_3.c
N fftw/rfftw/fcr_4.c
N fftw/rfftw/fcr_5.c
N fftw/rfftw/fcr_6.c
N fftw/rfftw/fcr_7.c
N fftw/rfftw/fcr_8.c
N fftw/rfftw/fcr_9.c
N fftw/rfftw/fcr_10.c
N fftw/rfftw/fcr_11.c
N fftw/rfftw/fcr_12.c
N fftw/rfftw/fcr_13.c
N fftw/rfftw/fcr_14.c
N fftw/rfftw/fcr_15.c
N fftw/rfftw/fcr_16.c
N fftw/rfftw/fcr_32.c
N fftw/rfftw/fcr_64.c
N fftw/rfftw/fcr_128.c
N fftw/rfftw/fhb_2.c
N fftw/rfftw/fhb_3.c
N fftw/rfftw/fhb_4.c
N fftw/rfftw/fhb_5.c
N fftw/rfftw/fhb_6.c
N fftw/rfftw/fhb_7.c
N fftw/rfftw/fhb_8.c
N fftw/rfftw/fhb_9.c
N fftw/rfftw/fhb_10.c
N fftw/rfftw/fhb_16.c
N fftw/rfftw/fhb_32.c
N fftw/rfftw/rconfig.c
N fftw/rfftw/rplanner.c
N fftw/rfftw/rexec.c
N fftw/rfftw/rexec2.c
N fftw/rfftw/rfftwnd.c
N fftw/rfftw/rgeneric.c
N fftw/rfftw/rfftwf77.c
N fftw/rfftw/rfftw.h
N fftw/tests/Makefile.in
N fftw/tests/README
N fftw/tests/Makefile.am
N fftw/tests/fftw_test.c
N fftw/tests/test_main.c
N fftw/tests/rfftw_test.c
N fftw/tests/test_main.h
N fftw/doc/Makefile.in
N fftw/doc/fftw.texi
N fftw/doc/version.texi
N fftw/doc/Makefile.am
N fftw/doc/mdate-sh
N fftw/doc/stamp-vti
N fftw/doc/texinfo.tex
N fftw/doc/fftw.ps
N fftw/doc/equation-1.gif
N fftw/doc/fftw_1.html
N fftw/doc/fftw_4.html
N fftw/doc/fftw_7.html
N fftw/doc/fftw_foot.html
N fftw/doc/equation-2.gif
N fftw/doc/fftw_2.html
N fftw/doc/fftw_5.html
N fftw/doc/fftw_8.html
N fftw/doc/fftw_toc.html
N fftw/doc/equation-3.gif
N fftw/doc/fftw_3.html
N fftw/doc/fftw_6.html
N fftw/doc/fftw_9.html
N fftw/doc/fftw_10.html
N fftw/doc/equation-4.gif
N fftw/doc/texi2html
N fftw/doc/rfftwnd.fig
N fftw/doc/rfftwnd.gif
N fftw/doc/fftw.info
N fftw/doc/fftw.info-1
N fftw/doc/fftw.info-2
N fftw/doc/fftw.info-3
N fftw/doc/fftw.info-4
N fftw/doc/fftw.info-5
N fftw/threads/Makefile.in
N fftw/threads/Makefile.am
N fftw/threads/executor_threads.c
N fftw/threads/fftw_threads.c
N fftw/threads/fftwnd_threads.c
N fftw/threads/fftw_f77_threads.c
N fftw/threads/fftw_threads.h
N fftw/threads/fftw_threads-int.h
N fftw/threads/rexec_threads.c
N fftw/threads/rexec2_threads.c
N fftw/threads/rfftwnd_threads.c
N fftw/threads/rfftw_f77_threads.c
N fftw/threads/rfftw_threads.h
N fftw/threads/fftw_threads_test.c
N fftw/threads/rfftw_threads_test.c
N fftw/mpi/Makefile.in
N fftw/mpi/Makefile.am
N fftw/mpi/sched.c
N fftw/mpi/sched.h
N fftw/mpi/TOMS_transpose.c
N fftw/mpi/TOMS_transpose.h
N fftw/mpi/transpose_mpi.c
N fftw/mpi/fftwnd_mpi.c
N fftw/mpi/fftw_mpi.c
N fftw/mpi/fftw_mpi.h
N fftw/mpi/rfftwnd_mpi.c
N fftw/mpi/rfftw_mpi.h
N fftw/mpi/test_sched.c
N fftw/mpi/test_transpose_mpi.c
N fftw/mpi/fftw_mpi_test.c
N fftw/mpi/rfftw_mpi_test.c
N fftw/fortran/f77_test.F
N fftw/fortran/fftw_f77.i
N fftw/gensrc/.indent.pro
N fftw/gensrc/Makefile
N fftw/gensrc/Makefile.fftw.am
N fftw/gensrc/Makefile.genfft
N fftw/gensrc/Makefile.rfftw.am
N fftw/gensrc/Makefile.sources
N fftw/gensrc/README
N fftw/gensrc/asched.ml
N fftw/gensrc/asched.mli
N fftw/gensrc/ast.ml
N fftw/gensrc/codelet_prelude
N fftw/gensrc/complex.ml
N fftw/gensrc/complex.mli
N fftw/gensrc/config
N fftw/gensrc/config_prelude
N fftw/gensrc/dag.ml
N fftw/gensrc/dag.mli
N fftw/gensrc/expr.ml
N fftw/gensrc/expr.mli
N fftw/gensrc/exprdag.ml
N fftw/gensrc/exprdag.mli
N fftw/gensrc/fft.ml
N fftw/gensrc/genfft.ml
N fftw/gensrc/install.sh
N fftw/gensrc/magic.ml
N fftw/gensrc/makeconfig.sh
N fftw/gensrc/makemakefile.sh
N fftw/gensrc/makerconfig.sh
N fftw/gensrc/makesources.sh
N fftw/gensrc/number.ml
N fftw/gensrc/number.mli
N fftw/gensrc/rconfig_prelude
N fftw/gensrc/schedule.ml
N fftw/gensrc/schedule.mli
N fftw/gensrc/symmetry.ml
N fftw/gensrc/to_c.ml
N fftw/gensrc/to_c.mli
N fftw/gensrc/twiddle.ml
N fftw/gensrc/util.ml
N fftw/gensrc/util.mli
N fftw/gensrc/variable.ml
N fftw/gensrc/variable.mli
N fftw/matlab/Makefile
N fftw/matlab/README
N fftw/matlab/fftw.c
N fftw/matlab/fftw.m
N fftw/cilk/Makefile
N fftw/cilk/README
N fftw/cilk/executor_cilk.cilk
N fftw/cilk/fftw_cilk.cilkh
N fftw/cilk/fftwnd_cilk.cilk
N fftw/cilk/test_cilk.cilk
N fftw/cilk/time_cilk.cilk
N fftw/FAQ/fftw-faq.ascii
N fftw/FAQ/Makefile
N fftw/FAQ/bfnnconv.pl
N fftw/FAQ/fftw-faq.bfnn
N fftw/FAQ/html.refs
N fftw/FAQ/m-ascii.pl
N fftw/FAQ/m-html.pl
N fftw/FAQ/m-info.pl
N fftw/FAQ/m-lout.pl
N fftw/FAQ/m-post.pl
N fftw/FAQ/fftw-faq.info
N fftw/FAQ/fftw-faq.xrefdb
N fftw/FAQ/fftw-faq.html/index.html
N fftw/FAQ/fftw-faq.html/section1.html
N fftw/FAQ/fftw-faq.html/section2.html
N fftw/FAQ/fftw-faq.html/section3.html
N fftw/FAQ/fftw-faq.html/section4.html
N fftw/FAQ/fftw-faq.html/section5.html

No conflicts created by this import


[input file was '-']

****************************************
Date:	Monday November 1, 1999 @ 17:01
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/charm
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/charm

Log Message:
Directory /Projects/namd2/cvsroot/fftw/charm added to the repository


[input file was '-']

****************************************
Date:	Monday November 1, 1999 @ 22:28
Author:	justin

Update of /Projects/namd2/cvsroot/namd2/src
In directory thalassa.ks.uiuc.edu:/tmp_mnt/Projects/r5/bioinfo/justin/namd2/src

Modified Files:
	ComputeIMD.C vmdsock.C vmdsock.h 
Log Message:
Added a parameter to the select functions to take a timeout value; used
in the IMD setup to block in select rather than using a tight while loop
to wait for a connection.


===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.6	Tue Nov  2 04:26:09 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: vmdsock.C        	Status: Up-to-date

   Working revision:	1.5	Tue Nov  2 03:15:13 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/vmdsock.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: vmdsock.h        	Status: Up-to-date

   Working revision:	1.4	Mon Nov  1 22:36:10 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/vmdsock.h,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Monday November 1, 1999 @ 22:55
Author:	justin

Update of /Projects/namd2/cvsroot/namd2/src
In directory thalassa.ks.uiuc.edu:/tmp_mnt/Projects/r5/bioinfo/justin/namd2/src

Modified Files:
	ComputeIMD.C 
Log Message:
IMD code now searches for a free port if the initial bind failed.  It also
reports the port to which a bind succeeded in the output.


===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.7	Tue Nov  2 04:50:57 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Tuesday November 2, 1999 @ 17:54
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C Controller.h 
Log Message:
Stale energies now output when not computed during multiple timestepping.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1104	Tue Nov  2 19:59:46 1999
   Repository revision:	1.1104	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1032	Tue Nov  2 19:50:36 1999
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday November 2, 1999 @ 17:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputeNonbondedExcl.C 
Log Message:
Eliminated old code which was if(0)'d out.


===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1026	Tue Nov  2 23:56:03 1999
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1025)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1023)
	release-2-0-pre-charm-syntax	(revision: 1.1021)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1021)
	release-alpha-1          	(revision: 1.1019)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday November 3, 1999 @ 15:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Makefile 
Log Message:
Cleaned up .ci/.decl.h/.def.h dependencies for gmake -j parallel make.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1094	Wed Nov  3 20:56:03 1999
   Repository revision:	1.1094	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday November 3, 1999 @ 17:01
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
firsttimestep and run now compatible w/o numsteps.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1096	Wed Nov  3 22:57:18 1999
   Repository revision:	1.1096	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday November 4, 1999 @ 10:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputeHomeTuples.h 
Log Message:
Notices when a patch needed by a tuple is missing.


===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1023	Wed Nov  3 15:04:29 1999
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday November 8, 1999 @ 10:38
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputeTcl.C 
Log Message:
Fixed group forces.


===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.17	Mon Nov  8 16:37:14 1999
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.15)
	release-2-1-beta-2       	(revision: 1.14)
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)


****************************************
Date:	Monday November 8, 1999 @ 10:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Escaped { }.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.22	Mon Nov  8 16:49:18 1999
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Monday November 8, 1999 @ 11:44
Author:	justin

Update of /Projects/namd2/cvsroot/namd2/src
In directory bilbao.ks.uiuc.edu:/tmp_mnt/Projects/r5/bioinfo/justin/namd2/src

Modified Files:
	ComputeIMD.C Controller.C IMDOutput.C IMDOutput.h imd.C imd.h 
Log Message:
Major rewrite of IMD code.  Eliminated strcmp's in favor of integer based
header in network byte order.  Added specific imd_send and imd_recv functions
which eliminate much of the implementation requirements on the part of VMD
and NAMD.  New code might also even work on machines with 8-byte integers.



===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.8	Sat Nov  6 21:53:25 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1105	Sat Nov  6 21:36:11 1999
   Repository revision:	1.1105	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: IMDOutput.C      	Status: Up-to-date

   Working revision:	1.7	Sat Nov  6 21:55:35 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/IMDOutput.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)

===================================================================
File: IMDOutput.h      	Status: Up-to-date

   Working revision:	1.6	Sat Nov  6 21:36:23 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/IMDOutput.h,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: imd.C            	Status: Up-to-date

   Working revision:	1.5	Sat Nov  6 22:23:13 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/imd.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: imd.h            	Status: Up-to-date

   Working revision:	1.6	Sat Nov  6 21:22:43 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/imd.h,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Monday November 8, 1999 @ 15:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Now checks for multiple globalForces.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1097	Mon Nov  8 21:47:46 1999
   Repository revision:	1.1097	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday November 8, 1999 @ 23:45
Author:	justin

Update of /Projects/namd2/cvsroot/namd2/src
In directory titan:/tmp_mnt/Projects/r5/bioinfo/justin/namd2/src

Modified Files:
	ComputeIMD.C IMDOutput.C imd.C imd.h 
Log Message:
Added handshake code to check for incompatible versions of IMD.  Also fixed
a bug in the rewritten IMD code that caused NAMD to hang if VMD exited without
shutting down NAMD first.


===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.9	Tue Nov  9 05:38:16 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: IMDOutput.C      	Status: Up-to-date

   Working revision:	1.8	Tue Nov  9 05:42:30 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/IMDOutput.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)

===================================================================
File: imd.C            	Status: Up-to-date

   Working revision:	1.6	Tue Nov  9 05:33:16 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/imd.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: imd.h            	Status: Up-to-date

   Working revision:	1.7	Tue Nov  9 03:33:49 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/imd.h,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Wednesday November 10, 1999 @ 9:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/arch

Modified Files:
	Origin2000.fftw 
Log Message:
Compile at NCSA out of the box.


===================================================================
File: Origin2000.fftw  	Status: Up-to-date

   Working revision:	1.2	Wed Nov 10 15:16:14 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Origin2000.fftw,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Wednesday November 10, 1999 @ 9:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/arch

Added Files:
	Solaris-i686.tcl 
Log Message:
Tcl for Solarix-x86.


===================================================================
File: Solaris-i686.tcl 	Status: Up-to-date

   Working revision:	1.1	Mon Nov  1 19:14:02 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Solaris-i686.tcl,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday November 10, 1999 @ 9:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Makefile 
Log Message:
Creates dummy executables if flipdcd and flipbinpdb don't compile (T3E).


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1095	Wed Nov 10 15:34:33 1999
   Repository revision:	1.1095	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday November 10, 1999 @ 15:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	config 
Log Message:
Eliminated use of NAMD_CCS macro.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.11	Wed Nov 10 20:56:06 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Wednesday November 10, 1999 @ 15:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	Controller.C Node.C ccsinterface.C ccsinterface.h 
Log Message:
Eliminated use of NAMD_CCS macro.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1106	Wed Nov 10 20:57:35 1999
   Repository revision:	1.1106	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1043	Wed Nov 10 20:57:50 1999
   Repository revision:	1.1043	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ccsinterface.C   	Status: Up-to-date

   Working revision:	1.6	Wed Nov 10 20:57:59 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ccsinterface.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ccsinterface.h   	Status: Up-to-date

   Working revision:	1.5	Wed Nov 10 20:58:06 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ccsinterface.h,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Wednesday November 10, 1999 @ 18:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv29177

Modified Files:
	IBM-SP.arch 
Added Files:
	AIX-RS6000-xlC.arch AIX-RS6000.base 
Log Message:
Updated AIX RS6000/SP port.


===================================================================
File: AIX-RS6000-xlC.arch	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 00:13:58 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000-xlC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: AIX-RS6000.base  	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 00:13:58 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: IBM-SP.arch      	Status: Up-to-date

   Working revision:	1.2	Thu Nov 11 00:13:58 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.arch,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Wednesday November 10, 1999 @ 18:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv29230

Modified Files:
	ConfigList.C NamdOneTools.C PDBData.h Parameters.h 
	ParseOptions.C PmeBase.h Sequencer.C SimParameters.C 
	ccsinterface.C strlib.C strlib.h vmdsock.C 
Log Message:
Updated AIX RS6000/SP port.


===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1015	Thu Nov 11 00:16:00 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.23	Thu Nov 11 00:16:00 1999
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.16)
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)

===================================================================
File: PDBData.h        	Status: Up-to-date

   Working revision:	1.1006	Thu Nov 11 00:16:00 1999
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/PDBData.h,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.1007	Thu Nov 11 00:16:00 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/Parameters.h,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1015	Thu Nov 11 00:16:00 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PmeBase.h        	Status: Up-to-date

   Working revision:	1.4	Thu Nov 11 00:16:00 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/PmeBase.h,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1083	Thu Nov 11 00:16:00 1999
   Repository revision:	1.1083	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1098	Thu Nov 11 00:16:00 1999
   Repository revision:	1.1098	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ccsinterface.C   	Status: Up-to-date

   Working revision:	1.7	Thu Nov 11 00:16:00 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ccsinterface.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: strlib.C         	Status: Up-to-date

   Working revision:	1.1007	Thu Nov 11 00:16:00 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/strlib.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: strlib.h         	Status: Up-to-date

   Working revision:	1.1007	Thu Nov 11 00:16:00 1999
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/strlib.h,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: vmdsock.C        	Status: Up-to-date

   Working revision:	1.6	Thu Nov 11 00:16:00 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/vmdsock.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Wednesday November 10, 1999 @ 18:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/dpme2
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv29266

Modified Files:
	dpme2.h dpme2_utilityW.c 
Log Message:
Updated AIX RS6000/SP port.


===================================================================
File: dpme2.h          	Status: Up-to-date

   Working revision:	1.5	Thu Nov 11 00:16:46 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/dpme2/dpme2.h,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.3)

===================================================================
File: no file dpme2_utilityW.c		Status: Needs Checkout

   Working revision:	1.6	Thu Nov 11 00:16:46 1999
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/dpme2/dpme2_utilityW.c,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)


****************************************
Date:	Wednesday November 10, 1999 @ 20:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv29780

Modified Files:
	Controller.C 
Log Message:
Another fix for AIX port.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1107	Thu Nov 11 02:13:13 1999
   Repository revision:	1.1107	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday November 10, 1999 @ 20:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv29805

Added Files:
	AIX-RS6000.tcl 
Log Message:
Added Tcl to AIX port.


===================================================================
File: AIX-RS6000.tcl   	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 02:13:50 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000.tcl,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday November 11, 1999 @ 9:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputeHomeTuples.h 
Log Message:
More informative error message.


===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1024	Fri Nov  5 15:27:07 1999
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday November 11, 1999 @ 10:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Makefile README.txt announce.txt notes.txt 
Log Message:
Updated version to 2.1.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1096	Thu Nov 11 16:00:57 1999
   Repository revision:	1.1096	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: README.txt       	Status: Up-to-date

   Working revision:	1.5	Thu Nov 11 15:54:53 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/README.txt,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.2)

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.8	Thu Nov 11 15:55:25 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.11	Thu Nov 11 15:58:47 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Thursday November 11, 1999 @ 10:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	main.C 
Log Message:
Updated version to 2.1.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1027	Thu Nov 11 16:00:38 1999
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday November 11, 1999 @ 16:17
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/converse
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw/converse

Log Message:
Directory /Projects/namd2/cvsroot/fftw/converse added to the repository


[input file was '-']

****************************************
Date:	Thursday November 11, 1999 @ 16:18
Author:	jim

Update of /Projects/namd2/cvsroot/fftw
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw

Modified Files:
	Makefile.am Makefile.in configure configure.in 
Log Message:
Manual attempt to create a converse subdir.


===================================================================
File: Makefile.am      	Status: Up-to-date

   Working revision:	1.2	Thu Nov 11 21:40:34 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/Makefile.am,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)

===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.2	Thu Nov 11 21:42:23 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)

===================================================================
File: configure        	Status: Up-to-date

   Working revision:	1.2	Thu Nov 11 22:00:09 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/configure,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)

===================================================================
File: configure.in     	Status: Up-to-date

   Working revision:	1.2	Thu Nov 11 22:07:59 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/configure.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Thursday November 11, 1999 @ 16:18
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/converse
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw/converse

Added Files:
	Makefile.am Makefile.in TOMS_transpose.c TOMS_transpose.h 
	fftw_converse.c fftw_converse.h fftw_converse_test.c 
	fftwnd_converse.c rfftw_converse.h rfftw_converse_test.c 
	rfftwnd_converse.c sched.c sched.h test_sched.c 
	test_transpose_converse.c transpose_converse.c 
Log Message:
Manual attempt to create a converse subdir.


===================================================================
File: Makefile.am      	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:36:22 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/Makefile.am,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:38:13 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/Makefile.in,v

   Existing Tags:
	No Tags Exist

===================================================================
File: TOMS_transpose.c 	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:38:39 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/TOMS_transpose.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: TOMS_transpose.h 	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:38:39 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/TOMS_transpose.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftw_converse.c  	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:38:39 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/fftw_converse.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftw_converse.h  	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:38:39 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/fftw_converse.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftw_converse_test.c	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:38:39 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/fftw_converse_test.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftwnd_converse.c	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:38:39 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/fftwnd_converse.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: rfftw_converse.h 	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:38:40 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/rfftw_converse.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: rfftw_converse_test.c	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:38:40 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/rfftw_converse_test.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: rfftwnd_converse.c	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:38:40 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/rfftwnd_converse.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: sched.c          	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:38:40 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/sched.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: sched.h          	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:38:40 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/sched.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: test_sched.c     	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:38:40 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/test_sched.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: test_transpose_converse.c	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:38:40 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/test_transpose_converse.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: transpose_converse.c	Status: Up-to-date

   Working revision:	1.1	Thu Nov 11 21:38:40 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/converse/transpose_converse.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday November 11, 1999 @ 17:28
Author:	jim

Update of /Projects/namd2/cvsroot/fftw
In directory oberon.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw

Modified Files:
	Makefile.in configure configure.in 
Log Message:
Now configures converse directory if CHARM environment variable is set.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.3	Thu Nov 11 23:26:10 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)

===================================================================
File: configure        	Status: Up-to-date

   Working revision:	1.3	Thu Nov 11 23:26:25 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/configure,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)

===================================================================
File: configure.in     	Status: Up-to-date

   Working revision:	1.3	Thu Nov 11 23:21:53 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/configure.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Thursday November 11, 1999 @ 17:28
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/converse
In directory oberon.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw/converse

Modified Files:
	Makefile.am Makefile.in 
Log Message:
Now configures converse directory if CHARM environment variable is set.


===================================================================
File: Makefile.am      	Status: Up-to-date

   Working revision:	1.2	Thu Nov 11 23:25:51 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/converse/Makefile.am,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.2	Thu Nov 11 23:26:11 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/converse/Makefile.in,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday November 11, 1999 @ 17:28
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/doc
In directory oberon.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw/doc

Modified Files:
	Makefile.in 
Log Message:
Now configures converse directory if CHARM environment variable is set.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.2	Thu Nov 11 23:26:10 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Thursday November 11, 1999 @ 17:28
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/fftw
In directory oberon.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw/fftw

Modified Files:
	Makefile.in config.h fftw.h 
Log Message:
Now configures converse directory if CHARM environment variable is set.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.2	Thu Nov 11 23:26:09 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/fftw/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)

===================================================================
File: config.h         	Status: Up-to-date

   Working revision:	1.2	Thu Nov 11 23:28:17 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/fftw/config.h,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)

===================================================================
File: fftw.h           	Status: Up-to-date

   Working revision:	1.2	Thu Nov 11 23:28:18 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/fftw/fftw.h,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Thursday November 11, 1999 @ 17:28
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/mpi
In directory oberon.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw/mpi

Modified Files:
	Makefile.in 
Log Message:
Now configures converse directory if CHARM environment variable is set.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.2	Thu Nov 11 23:26:10 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/mpi/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Thursday November 11, 1999 @ 17:28
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/rfftw
In directory oberon.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw/rfftw

Modified Files:
	Makefile.in 
Log Message:
Now configures converse directory if CHARM environment variable is set.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.2	Thu Nov 11 23:26:09 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/rfftw/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Thursday November 11, 1999 @ 17:28
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/tests
In directory oberon.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw/tests

Modified Files:
	Makefile.in 
Log Message:
Now configures converse directory if CHARM environment variable is set.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.2	Thu Nov 11 23:26:09 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/tests/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Thursday November 11, 1999 @ 17:28
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/threads
In directory oberon.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw/threads

Modified Files:
	Makefile.in 
Log Message:
Now configures converse directory if CHARM environment variable is set.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.2	Thu Nov 11 23:26:10 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/threads/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Friday November 12, 1999 @ 14:06
Author:	jim

Update of /Projects/namd2/cvsroot/fftw
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw

Modified Files:
	Makefile.in configure 
Log Message:
Updated to use converse directory.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.4	Fri Nov 12 18:30:43 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/fftw/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)

===================================================================
File: configure        	Status: Up-to-date

   Working revision:	1.4	Fri Nov 12 18:30:43 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/fftw/configure,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Friday November 12, 1999 @ 14:06
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/doc
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw/doc

Modified Files:
	stamp-vti version.texi 
Log Message:
Updated to use converse directory.


===================================================================
File: stamp-vti        	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 18:33:54 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/stamp-vti,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)

===================================================================
File: version.texi     	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 18:33:54 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/version.texi,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Friday November 12, 1999 @ 14:07
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/fftw
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw/fftw

Modified Files:
	config.h fftw.h stamp-h1.in stamp-h2.in 
Log Message:
Updated to use converse directory.


===================================================================
File: config.h         	Status: Up-to-date

   Working revision:	1.3	Fri Nov 12 20:07:04 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/fftw/config.h,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)

===================================================================
File: fftw.h           	Status: Up-to-date

   Working revision:	1.3	Fri Nov 12 20:07:04 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/fftw/fftw.h,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)

===================================================================
File: stamp-h1.in      	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 18:32:25 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/fftw/stamp-h1.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)

===================================================================
File: stamp-h2.in      	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 18:32:23 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/fftw/stamp-h2.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Friday November 12, 1999 @ 14:11
Author:	jim

Update of /Projects/namd2/cvsroot/fftw
In directory oberon.ks.uiuc.edu:/tmp/fftw

Modified Files:
	aclocal.m4 
Log Message:
Need to update modification date.


===================================================================
File: aclocal.m4       	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 20:10:33 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/aclocal.m4,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Friday November 12, 1999 @ 16:09
Author:	jim

Update of /Projects/namd2/cvsroot/fftw
In directory verdun.ks.uiuc.edu:/tmp/fftw

Modified Files:
	Makefile.in bootstrap.sh 
Log Message:
Redid automake using --include-deps option.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.5	Fri Nov 12 22:07:16 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/fftw/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)

===================================================================
File: bootstrap.sh     	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 22:06:48 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/bootstrap.sh,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Friday November 12, 1999 @ 16:10
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/converse
In directory verdun.ks.uiuc.edu:/tmp/fftw/converse

Modified Files:
	Makefile.in 
Log Message:
Redid automake using --include-deps option.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.3	Fri Nov 12 22:07:16 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/converse/Makefile.in,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday November 12, 1999 @ 16:10
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/doc
In directory verdun.ks.uiuc.edu:/tmp/fftw/doc

Modified Files:
	Makefile.in 
Log Message:
Redid automake using --include-deps option.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.3	Fri Nov 12 22:07:16 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/doc/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Friday November 12, 1999 @ 16:10
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/fftw
In directory verdun.ks.uiuc.edu:/tmp/fftw/fftw

Modified Files:
	Makefile.in config.h fftw.h 
Log Message:
Redid automake using --include-deps option.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.3	Fri Nov 12 22:07:15 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/fftw/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)

===================================================================
File: config.h         	Status: Up-to-date

   Working revision:	1.4	Fri Nov 12 22:10:02 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/fftw/fftw/config.h,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)

===================================================================
File: fftw.h           	Status: Up-to-date

   Working revision:	1.4	Fri Nov 12 22:10:02 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/fftw/fftw/fftw.h,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Friday November 12, 1999 @ 16:10
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/mpi
In directory verdun.ks.uiuc.edu:/tmp/fftw/mpi

Modified Files:
	Makefile.in 
Log Message:
Redid automake using --include-deps option.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.3	Fri Nov 12 22:07:16 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/mpi/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Friday November 12, 1999 @ 16:10
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/rfftw
In directory verdun.ks.uiuc.edu:/tmp/fftw/rfftw

Modified Files:
	Makefile.in 
Log Message:
Redid automake using --include-deps option.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.3	Fri Nov 12 22:07:15 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/rfftw/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Friday November 12, 1999 @ 16:10
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/tests
In directory verdun.ks.uiuc.edu:/tmp/fftw/tests

Modified Files:
	Makefile.in 
Log Message:
Redid automake using --include-deps option.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.3	Fri Nov 12 22:07:15 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/tests/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Friday November 12, 1999 @ 16:10
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/threads
In directory verdun.ks.uiuc.edu:/tmp/fftw/threads

Modified Files:
	Makefile.in 
Log Message:
Redid automake using --include-deps option.


===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.3	Fri Nov 12 22:07:16 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/threads/Makefile.in,v

   Existing Tags:
	fftw_2_1_2               	(revision: 1.1.1.1)
	fftw_org                 	(branch: 1.1.1)


****************************************
Date:	Friday November 12, 1999 @ 16:33
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/doc
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw/doc

Removed Files:
	fftw.info fftw.info-1 fftw.info-2 fftw.info-3 fftw.info-4 
	fftw.info-5 fftw.ps fftw_1.html fftw_10.html fftw_2.html 
	fftw_3.html fftw_4.html fftw_5.html fftw_6.html fftw_7.html 
	fftw_8.html fftw_9.html fftw_foot.html fftw_toc.html 
Log Message:
Removed files which are regenerated.


===================================================================
File: no file fftw.info		Status: Up-to-date

   Working revision:	No entry for fftw.info
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw.info,v

===================================================================
File: no file fftw.info-1		Status: Up-to-date

   Working revision:	No entry for fftw.info-1
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw.info-1,v

===================================================================
File: no file fftw.info-2		Status: Up-to-date

   Working revision:	No entry for fftw.info-2
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw.info-2,v

===================================================================
File: no file fftw.info-3		Status: Up-to-date

   Working revision:	No entry for fftw.info-3
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw.info-3,v

===================================================================
File: no file fftw.info-4		Status: Up-to-date

   Working revision:	No entry for fftw.info-4
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw.info-4,v

===================================================================
File: no file fftw.info-5		Status: Up-to-date

   Working revision:	No entry for fftw.info-5
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw.info-5,v

===================================================================
File: no file fftw.ps		Status: Up-to-date

   Working revision:	No entry for fftw.ps
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw.ps,v

===================================================================
File: no file fftw_1.html		Status: Up-to-date

   Working revision:	No entry for fftw_1.html
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw_1.html,v

===================================================================
File: no file fftw_10.html		Status: Up-to-date

   Working revision:	No entry for fftw_10.html
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw_10.html,v

===================================================================
File: no file fftw_2.html		Status: Up-to-date

   Working revision:	No entry for fftw_2.html
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw_2.html,v

===================================================================
File: no file fftw_3.html		Status: Up-to-date

   Working revision:	No entry for fftw_3.html
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw_3.html,v

===================================================================
File: no file fftw_4.html		Status: Up-to-date

   Working revision:	No entry for fftw_4.html
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw_4.html,v

===================================================================
File: no file fftw_5.html		Status: Up-to-date

   Working revision:	No entry for fftw_5.html
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw_5.html,v

===================================================================
File: no file fftw_6.html		Status: Up-to-date

   Working revision:	No entry for fftw_6.html
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw_6.html,v

===================================================================
File: no file fftw_7.html		Status: Up-to-date

   Working revision:	No entry for fftw_7.html
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw_7.html,v

===================================================================
File: no file fftw_8.html		Status: Up-to-date

   Working revision:	No entry for fftw_8.html
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw_8.html,v

===================================================================
File: no file fftw_9.html		Status: Up-to-date

   Working revision:	No entry for fftw_9.html
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw_9.html,v

===================================================================
File: no file fftw_foot.html		Status: Up-to-date

   Working revision:	No entry for fftw_foot.html
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw_foot.html,v

===================================================================
File: no file fftw_toc.html		Status: Up-to-date

   Working revision:	No entry for fftw_toc.html
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/doc/Attic/fftw_toc.html,v


****************************************
Date:	Friday November 12, 1999 @ 16:36
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/fftw
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw/fftw

Removed Files:
	config.h fftw.h 
Log Message:
Removed files which are generated by configure.


===================================================================
File: no file config.h		Status: Up-to-date

   Working revision:	No entry for config.h
   Repository revision:	1.5	/Projects/namd2/cvsroot/fftw/fftw/Attic/config.h,v

===================================================================
File: no file fftw.h		Status: Up-to-date

   Working revision:	No entry for fftw.h
   Repository revision:	1.5	/Projects/namd2/cvsroot/fftw/fftw/Attic/fftw.h,v


****************************************
Date:	Monday November 15, 1999 @ 10:34
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/converse
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw/converse

Modified Files:
	TOMS_transpose.h fftw_converse.c fftw_converse.h 
	fftw_converse_test.c fftwnd_converse.c rfftw_converse.h 
	rfftw_converse_test.c rfftwnd_converse.c sched.c 
	test_transpose_converse.c transpose_converse.c 
Log Message:
Replaced mpi with converse in include files.


===================================================================
File: TOMS_transpose.h 	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 23:25:54 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/converse/TOMS_transpose.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftw_converse.c  	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 23:26:00 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/converse/fftw_converse.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftw_converse.h  	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 23:31:59 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/converse/fftw_converse.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftw_converse_test.c	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 23:26:16 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/converse/fftw_converse_test.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftwnd_converse.c	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 23:28:18 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/converse/fftwnd_converse.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: rfftw_converse.h 	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 23:32:05 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/converse/rfftw_converse.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: rfftw_converse_test.c	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 23:26:35 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/converse/rfftw_converse_test.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: rfftwnd_converse.c	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 23:26:40 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/converse/rfftwnd_converse.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: sched.c          	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 23:26:45 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/converse/sched.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: test_transpose_converse.c	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 23:28:22 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/converse/test_transpose_converse.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: transpose_converse.c	Status: Up-to-date

   Working revision:	1.2	Fri Nov 12 23:28:25 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/converse/transpose_converse.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday November 15, 1999 @ 12:53
Author:	jim

Update of /Projects/namd2/cvsroot/fftw/converse
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/fftw/fftw/converse

Modified Files:
	fftw_converse.c fftw_converse.h fftwnd_converse.c 
	rfftw_converse.h rfftwnd_converse.c test_transpose_converse.c 
	transpose_converse.c 
Log Message:
Enough hacks and comments to compile.


===================================================================
File: fftw_converse.c  	Status: Up-to-date

   Working revision:	1.3	Mon Nov 15 17:01:41 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/converse/fftw_converse.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftw_converse.h  	Status: Up-to-date

   Working revision:	1.3	Mon Nov 15 16:52:40 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/converse/fftw_converse.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftwnd_converse.c	Status: Up-to-date

   Working revision:	1.3	Mon Nov 15 17:00:18 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/converse/fftwnd_converse.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: rfftw_converse.h 	Status: Up-to-date

   Working revision:	1.3	Mon Nov 15 17:03:53 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/converse/rfftw_converse.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: rfftwnd_converse.c	Status: Up-to-date

   Working revision:	1.3	Mon Nov 15 17:02:37 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/converse/rfftwnd_converse.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: test_transpose_converse.c	Status: Up-to-date

   Working revision:	1.3	Mon Nov 15 17:12:46 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/converse/test_transpose_converse.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: transpose_converse.c	Status: Up-to-date

   Working revision:	1.3	Mon Nov 15 16:54:17 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/fftw/converse/transpose_converse.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday November 29, 1999 @ 15:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2/ug

Modified Files:
	ug_fenergy.tex 
Added Files:
	.latex2html-init 
Log Message:
LaTeX2HTML now works correctly and gives a white background.


===================================================================
File: .latex2html-init 	Status: Up-to-date

   Working revision:	1.1	Mon Nov 29 21:12:38 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/ug/.latex2html-init,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_fenergy.tex   	Status: Up-to-date

   Working revision:	1.7	Mon Nov 29 21:18:22 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/ug/ug_fenergy.tex,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.4)


****************************************
Date:	Tuesday November 30, 1999 @ 11:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2/ug

Modified Files:
	namd_copyright.tex 
Log Message:
Dropped License bits from subsection to subsubsection for LaTeX2HTML.


===================================================================
File: namd_copyright.tex	Status: Up-to-date

   Working revision:	1.8	Tue Nov 30 17:29:28 1999
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/ug/namd_copyright.tex,v

   Existing Tags:
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Tuesday November 30, 1999 @ 14:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2/ug

Modified Files:
	Makefile 
Removed Files:
	.latex2html-init 
Log Message:
Using CSS to change background color as workaround to LaTeX2HTML bug.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.11	Tue Nov 30 19:32:26 1999
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: no file .latex2html-init		Status: Up-to-date

   Working revision:	No entry for .latex2html-init
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/ug/Attic/.latex2html-init,v


****************************************
Date:	Wednesday December 1, 1999 @ 14:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2/ug

Modified Files:
	Makefile 
Added Files:
	.latex2html-init 
Log Message:
Now using -toc_stars workaround until latex2html is fixed.


===================================================================
File: .latex2html-init 	Status: Up-to-date

   Working revision:	1.3	Wed Dec  1 16:27:33 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/ug/.latex2html-init,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.12	Wed Dec  1 16:25:25 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Wednesday December 1, 1999 @ 15:33
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/arch
In directory bastogne.ks.uiuc.edu:/Home/p1/brunner/tmp/namd2/arch

Modified Files:
	ASCI-Red.arch 
Log Message:
Added new options for the ASCI-Red



===================================================================
File: ASCI-Red.arch    	Status: Up-to-date

   Working revision:	1.2	Wed Dec  1 20:57:53 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/ASCI-Red.arch,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Wednesday December 1, 1999 @ 15:35
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Home/p1/brunner/tmp/namd2/src

Modified Files:
	Node.C common.C vmdsock.C 
Log Message:
Made dummy VMD code made file compression and gethostname() calls
deselectable with new #defines, for ASCI-Red. 
-DDUMMY_VMDSOCK -DNOHOSTNAME -DNOCOMPRESSED



===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1044	Wed Dec  1 20:53:56 1999
   Repository revision:	1.1044	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1029	Wed Dec  1 20:58:32 1999
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: vmdsock.C        	Status: Up-to-date

   Working revision:	1.7	Wed Dec  1 01:24:58 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/vmdsock.C,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Friday December 3, 1999 @ 11:34
Author:	justin

Update of /Projects/namd2/cvsroot/namd2
In directory titan:/tmp_mnt/Projects/r5/bioinfo/justin/namd2/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Removed SMD.* and SMDMsgs.*.  Refactored ComputeSMD as a ComputeGlobalMaster and
updated dependencies.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.49	Fri Dec  3 17:16:17 1999
   Repository revision:	1.49	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1097	Fri Dec  3 17:21:58 1999
   Repository revision:	1.1097	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday December 3, 1999 @ 11:36
Author:	justin

Update of /Projects/namd2/cvsroot/namd2/src
In directory titan:/tmp_mnt/Projects/r5/bioinfo/justin/namd2/namd2/src

Modified Files:
	ComputeGlobal.C ComputeMap.h ComputeMgr.C ComputeSMD.C 
	ComputeSMD.h Controller.C NamdState.C NamdState.h Node.C 
	Node.ci Node.h SimParameters.C SimParameters.h WorkDistrib.C 
	common.h 
Removed Files:
	SMD.C SMD.h SMDMsgs.C SMDMsgs.h 
Log Message:
Total rewrite of ComputeSMD.  New code does one thing: applies a moving 
harmonic restraint to the center of mass of a group of atoms, with the force
applied only along the direction of motion. 


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.19	Fri Dec  3 05:59:40 1999
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1020	Thu Dec  2 04:14:15 1999
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1032	Thu Dec  2 04:14:35 1999
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.10	Fri Dec  3 16:57:55 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeSMD.h     	Status: Up-to-date

   Working revision:	1.7	Fri Dec  3 05:41:53 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.h,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1108	Thu Dec  2 04:13:55 1999
   Repository revision:	1.1108	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1025	Thu Dec  2 03:24:30 1999
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1015	Wed Dec  1 23:39:17 1999
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1014)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1045	Thu Dec  2 03:28:53 1999
   Repository revision:	1.1045	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1013	Thu Dec  2 03:33:42 1999
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1019	Thu Dec  2 03:25:52 1999
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1099	Fri Dec  3 17:19:18 1999
   Repository revision:	1.1099	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1052	Thu Dec  2 17:41:54 1999
   Repository revision:	1.1052	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1076	Thu Dec  2 04:12:38 1999
   Repository revision:	1.1076	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1030	Thu Dec  2 03:34:08 1999
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1024)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file SMD.C		Status: Up-to-date

   Working revision:	No entry for SMD.C
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/Attic/SMD.C,v

===================================================================
File: no file SMD.h		Status: Up-to-date

   Working revision:	No entry for SMD.h
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/Attic/SMD.h,v

===================================================================
File: no file SMDMsgs.C		Status: Up-to-date

   Working revision:	No entry for SMDMsgs.C
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/Attic/SMDMsgs.C,v

===================================================================
File: no file SMDMsgs.h		Status: Up-to-date

   Working revision:	No entry for SMDMsgs.h
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/Attic/SMDMsgs.h,v


****************************************
Date:	Friday December 3, 1999 @ 14:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Refactoring startup/control for frontend separation.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.50	Fri Dec  3 20:45:09 1999
   Repository revision:	1.50	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1098	Fri Dec  3 20:20:37 1999
   Repository revision:	1.1098	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday December 3, 1999 @ 14:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2/src

Modified Files:
	common.C main.C 
Added Files:
	mainfunc.C 
Removed Files:
	defmain.C 
Log Message:
Refactoring startup/control for frontend separation.


===================================================================
File: mainfunc.C       	Status: Up-to-date

   Working revision:	1.1	Fri Dec  3 20:17:02 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/mainfunc.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1030	Fri Dec  3 20:05:16 1999
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1028	Fri Dec  3 20:07:20 1999
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file defmain.C		Status: Up-to-date

   Working revision:	No entry for defmain.C
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/Attic/defmain.C,v


****************************************
Date:	Saturday December 4, 1999 @ 16:43
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2
In directory bastogne.ks.uiuc.edu:/Projects/brunner/NAMD/namd2

Modified Files:
	Makefile 
Log Message:
Added tracemode summary compilation


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1099	Sat Dec  4 20:27:40 1999
   Repository revision:	1.1099	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday December 4, 1999 @ 16:43
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/arch
In directory bastogne.ks.uiuc.edu:/Projects/brunner/NAMD/namd2/arch

Modified Files:
	ASCI-Red.arch 
Log Message:
Put in -D's to customize for ASCI-Red
Added tracemode summary compilation


===================================================================
File: ASCI-Red.arch    	Status: Up-to-date

   Working revision:	1.3	Wed Dec  1 22:12:01 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/ASCI-Red.arch,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Saturday December 4, 1999 @ 16:44
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Projects/brunner/NAMD/namd2/src

Modified Files:
	common.C 
Log Message:
#ifdefs added for ASCI-specific code



===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1031	Sat Dec  4 20:42:57 1999
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday December 5, 1999 @ 16:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/tmp/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Purged dead code.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.51	Sun Dec  5 21:12:50 1999
   Repository revision:	1.51	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1100	Sun Dec  5 21:09:36 1999
   Repository revision:	1.1100	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday December 5, 1999 @ 16:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/namd2/src

Removed Files:
	ComputeGeneral.C ComputeGeneral.h ComputeHomeAtoms.h Queue.h 
Log Message:
Purged dead code.


===================================================================
File: no file ComputeGeneral.C		Status: Up-to-date

   Working revision:	No entry for ComputeGeneral.C
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeGeneral.C,v

===================================================================
File: no file ComputeGeneral.h		Status: Up-to-date

   Working revision:	No entry for ComputeGeneral.h
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeGeneral.h,v

===================================================================
File: no file ComputeHomeAtoms.h		Status: Up-to-date

   Working revision:	No entry for ComputeHomeAtoms.h
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeHomeAtoms.h,v

===================================================================
File: no file Queue.h		Status: Up-to-date

   Working revision:	No entry for Queue.h
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/Attic/Queue.h,v


****************************************
Date:	Monday December 6, 1999 @ 11:57
Author:	justin

Update of /Projects/namd2/cvsroot/namd2/ug
In directory bilbao.ks.uiuc.edu:/tmp_mnt/Projects/r5/bioinfo/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Update docs for new SMD code.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.23	Mon Dec  6 17:56:49 1999
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Monday December 6, 1999 @ 14:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2/src

Modified Files:
	Node.C Node.ci Node.h mainfunc.C 
Log Message:
can now halt scheduler to return to front end


===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1046	Mon Dec  6 20:42:08 1999
   Repository revision:	1.1046	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1014	Fri Dec  3 22:57:15 1999
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1020	Fri Dec  3 22:50:15 1999
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: mainfunc.C       	Status: Up-to-date

   Working revision:	1.2	Mon Dec  6 20:52:32 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/mainfunc.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday December 6, 1999 @ 16:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Moving code around for API.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.52	Mon Dec  6 22:15:13 1999
   Repository revision:	1.52	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1101	Mon Dec  6 21:27:42 1999
   Repository revision:	1.1101	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday December 6, 1999 @ 16:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2/src

Modified Files:
	Namd.C mainfunc.C 
Added Files:
	BackEnd.C BackEnd.h 
Log Message:
Moving code around for API.


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.1	Mon Dec  6 22:01:23 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BackEnd.h        	Status: Up-to-date

   Working revision:	1.1	Mon Dec  6 21:32:38 1999
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/BackEnd.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Namd.C           	Status: Up-to-date

   Working revision:	1.1017	Mon Dec  6 22:05:50 1999
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/Namd.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: mainfunc.C       	Status: Up-to-date

   Working revision:	1.3	Mon Dec  6 21:37:33 1999
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/mainfunc.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday December 15, 1999 @ 10:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Makefile 
Log Message:
Fixes permissions before tar on Make release.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1102	Wed Dec 15 16:49:38 1999
   Repository revision:	1.1102	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 15, 1999 @ 17:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Rearranging for frontend/backend separation.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.53	Wed Dec 15 22:45:20 1999
   Repository revision:	1.53	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1103	Wed Dec 15 17:34:47 1999
   Repository revision:	1.1103	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 15, 1999 @ 17:31
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2/src

Modified Files:
	BackEnd.C BackEnd.h ComputeDPME.C ComputeDPMTA.C 
	ComputeFreeEnergy.C ComputeFullDirect.C ComputeGlobal.C 
	ComputeGlobalEasy.C ComputeGlobalMaster.C ComputeHomePatches.C 
	ComputeHomeTuples.h ComputeNonbondedExcl.C ComputePme.C 
	ComputeTcl.C Controller.C Controller.h LdbCoordinator.C 
	LdbCoordinator.h NamdState.C NamdState.h Node.C Node.h 
	ProxyMgr.C ScriptTcl.C ScriptTcl.h Sequencer.C Sequencer.h 
	TestController.C mainfunc.C 
Removed Files:
	Namd.C Namd.h 
Log Message:
Rearranging for frontend/backend separation.


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.2	Tue Dec  7 00:07:34 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BackEnd.h        	Status: Up-to-date

   Working revision:	1.2	Tue Dec  7 00:07:40 1999
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/BackEnd.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.21	Mon Dec  6 23:14:11 1999
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-1              	(revision: 1.20)
	release-2-1-beta-4       	(revision: 1.20)
	release-2-1-beta-3       	(revision: 1.20)
	release-2-1-beta-2       	(revision: 1.20)
	release-2-1-beta-1       	(revision: 1.17)
	release-2-0-pre-charm-syntax	(revision: 1.10)
	release-2-0              	(revision: 1.10)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1064	Mon Dec  6 23:14:14 1999
   Repository revision:	1.1064	/Projects/namd2/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1063)
	release-2-1-beta-4       	(revision: 1.1063)
	release-2-1-beta-3       	(revision: 1.1063)
	release-2-1-beta-2       	(revision: 1.1063)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1054)
	release-2-0              	(revision: 1.1053)
	release-2-0-beta-3       	(revision: 1.1053)
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.22	Mon Dec  6 23:14:18 1999
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	release-2-1              	(revision: 1.21)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.20)
	release-2-1-beta-1       	(revision: 1.18)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.14)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.12)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1027	Mon Dec  6 23:14:20 1999
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1023)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1012)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.20	Mon Dec  6 23:14:23 1999
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeGlobalEasy.C	Status: Up-to-date

   Working revision:	1.7	Mon Dec  6 23:14:27 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalEasy.C,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: ComputeGlobalMaster.C	Status: Up-to-date

   Working revision:	1.7	Mon Dec  6 23:14:29 1999
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMaster.C,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.1010	Mon Dec  6 23:14:31 1999
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatches.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1009)
	release-2-1-beta-4       	(revision: 1.1009)
	release-2-1-beta-3       	(revision: 1.1009)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1025	Mon Dec  6 23:14:33 1999
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1027	Mon Dec  6 23:14:36 1999
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1025)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1023)
	release-2-0-pre-charm-syntax	(revision: 1.1021)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1021)
	release-alpha-1          	(revision: 1.1019)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.10	Mon Dec  6 23:14:38 1999
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.18	Mon Dec  6 23:14:40 1999
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-1              	(revision: 1.17)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.15)
	release-2-1-beta-2       	(revision: 1.14)
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1109	Wed Dec 15 22:57:34 1999
   Repository revision:	1.1109	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1033	Wed Dec 15 22:22:44 1999
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.39	Wed Dec 15 23:09:40 1999
   Repository revision:	1.39	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.27	Wed Dec 15 22:21:38 1999
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-2-1              	(revision: 1.26)
	release-2-1-beta-4       	(revision: 1.26)
	release-2-1-beta-3       	(revision: 1.26)
	release-2-1-beta-2       	(revision: 1.26)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.23)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1026	Tue Dec  7 17:42:12 1999
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1016	Tue Dec  7 17:42:05 1999
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1014)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1047	Tue Dec  7 19:16:21 1999
   Repository revision:	1.1047	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1021	Tue Dec  7 03:17:59 1999
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1029	Mon Dec  6 23:14:45 1999
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1023)
	release-2-0              	(revision: 1.1023)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1023)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.13	Tue Dec  7 19:31:16 1999
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.9	Tue Dec  7 04:01:54 1999
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1084	Wed Dec 15 22:57:31 1999
   Repository revision:	1.1084	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1030	Wed Dec 15 22:22:41 1999
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: TestController.C 	Status: Up-to-date

   Working revision:	1.12	Wed Dec 15 21:58:18 1999
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/TestController.C,v

   Existing Tags:
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.11)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: mainfunc.C       	Status: Up-to-date

   Working revision:	1.4	Tue Dec  7 03:21:29 1999
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/mainfunc.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file Namd.C		Status: Up-to-date

   Working revision:	No entry for Namd.C
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/Attic/Namd.C,v

===================================================================
File: no file Namd.h		Status: Up-to-date

   Working revision:	No entry for Namd.h
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/Attic/Namd.h,v


****************************************
Date:	Wednesday December 15, 1999 @ 17:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Removed long-broken TestSequencer and TestController.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.54	Wed Dec 15 23:38:14 1999
   Repository revision:	1.54	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1104	Wed Dec 15 23:36:03 1999
   Repository revision:	1.1104	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 15, 1999 @ 17:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2/src

Modified Files:
	HomePatch.h NamdState.h Node.C 
Removed Files:
	TestController.C TestController.h TestSequencer.C 
	TestSequencer.h 
Log Message:
Removed long-broken TestSequencer and TestController.


===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1027	Wed Dec 15 23:37:46 1999
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.h      	Status: Up-to-date

   Working revision:	1.1017	Wed Dec 15 23:37:50 1999
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/NamdState.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1014)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1048	Wed Dec 15 23:37:11 1999
   Repository revision:	1.1048	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file TestController.C		Status: Up-to-date

   Working revision:	No entry for TestController.C
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/Attic/TestController.C,v

===================================================================
File: no file TestController.h		Status: Up-to-date

   Working revision:	No entry for TestController.h
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/Attic/TestController.h,v

===================================================================
File: no file TestSequencer.C		Status: Up-to-date

   Working revision:	No entry for TestSequencer.C
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/Attic/TestSequencer.C,v

===================================================================
File: no file TestSequencer.h		Status: Up-to-date

   Working revision:	No entry for TestSequencer.h
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/Attic/TestSequencer.h,v


****************************************
Date:	Wednesday December 15, 1999 @ 18:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2/src

Modified Files:
	Controller.C Node.h mainfunc.C 
Log Message:
Tcl callbacks work again.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1110	Thu Dec 16 00:16:36 1999
   Repository revision:	1.1110	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1022	Thu Dec 16 00:16:24 1999
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: mainfunc.C       	Status: Up-to-date

   Working revision:	1.5	Thu Dec 16 00:18:07 1999
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/mainfunc.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday December 15, 1999 @ 18:55
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2/src

Modified Files:
	ScriptTcl.C 
Log Message:
print now works correctly


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.14	Thu Dec 16 00:51:39 1999
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Tuesday December 21, 1999 @ 16:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2

Modified Files:
	Makefile 
Log Message:
Fixed spelling error.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1105	Tue Dec 21 22:16:06 1999
   Repository revision:	1.1105	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday January 6, 19100 @ 16:00
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory asuncion.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Matched delete [] to new [].


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1077	Thu Jan  6 21:35:14 2000
   Repository revision:	1.1077	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday January 7, 19100 @ 17:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	dumpdcd.c 
Log Message:
Uses readonly file access.


===================================================================
File: dumpdcd.c        	Status: Up-to-date

   Working revision:	1.2	Fri Jan  7 23:27:32 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/dumpdcd.c,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)
	release-2-1-beta-3       	(revision: 1.1)
	release-2-1-beta-2       	(revision: 1.1)
	release-2-1-beta-1       	(revision: 1.1)


****************************************
Date:	Monday January 10, 19100 @ 14:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	license.txt 
Log Message:
New license agreement.


===================================================================
File: license.txt      	Status: Up-to-date

   Working revision:	1.3	Mon Jan 10 19:59:23 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/license.txt,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.2)
	release-2-1-beta-1       	(revision: 1.1)


****************************************
Date:	Monday January 10, 19100 @ 14:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	license.txt 
Log Message:
small formatting tweaks


===================================================================
File: license.txt      	Status: Up-to-date

   Working revision:	1.4	Mon Jan 10 20:08:23 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/license.txt,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.2)
	release-2-1-beta-1       	(revision: 1.1)


****************************************
Date:	Wednesday January 19, 19100 @ 16:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/contra/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added ability to write "measurements" for Tcl scripts.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.55	Wed Jan 19 22:15:04 2000
   Repository revision:	1.55	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1106	Wed Jan 19 20:18:31 2000
   Repository revision:	1.1106	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 19, 19100 @ 16:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/contra/namd2/src

Modified Files:
	Broadcasts.h Controller.C Node.h Output.C Output.h ScriptTcl.C 
	ScriptTcl.h Sequencer.C 
Added Files:
	Measure.C Measure.h 
Log Message:
Added ability to write "measurements" for Tcl scripts.


===================================================================
File: Measure.C        	Status: Up-to-date

   Working revision:	1.1	Wed Jan 19 20:55:35 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/Measure.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Measure.h        	Status: Up-to-date

   Working revision:	1.1	Wed Jan 19 20:32:28 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/Measure.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.10	Wed Jan 19 16:01:43 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1111	Wed Jan 19 16:34:12 2000
   Repository revision:	1.1111	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1023	Wed Jan 19 19:31:03 2000
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.33	Wed Jan 19 20:58:21 2000
   Repository revision:	1.33	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Output.h         	Status: Up-to-date

   Working revision:	1.13	Wed Jan 19 15:53:03 2000
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/Output.h,v

   Existing Tags:
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.12)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)
	development-3            	(revision: 1.1)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.15	Wed Jan 19 21:00:28 2000
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.10	Wed Jan 19 19:31:13 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1085	Wed Jan 19 15:58:22 2000
   Repository revision:	1.1085	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 24, 19100 @ 16:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/contra/namd2/src

Modified Files:
	Broadcasts.h Controller.C ScriptTcl.C ScriptTcl.h Sequencer.C 
	Sequencer.h SimParameters.C 
Log Message:
Added "reinitvels <temperature>" command.


===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.11	Mon Jan 24 22:00:41 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1112	Mon Jan 24 22:32:19 2000
   Repository revision:	1.1112	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.16	Mon Jan 24 22:19:43 2000
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.11	Mon Jan 24 22:08:16 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1086	Mon Jan 24 22:00:12 2000
   Repository revision:	1.1086	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1031	Mon Jan 24 21:58:16 2000
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1100	Mon Jan 24 22:19:05 2000
   Repository revision:	1.1100	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 24, 19100 @ 19:00
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/contra/namd2/src

Modified Files:
	Broadcasts.h Controller.C HomePatch.C HomePatch.h Migration.h 
	ScriptTcl.C ScriptTcl.h Sequencer.C 
Log Message:
Added checkpoint and revert functions for CONTRA.


===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.12	Mon Jan 24 22:54:19 2000
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1113	Mon Jan 24 23:04:24 2000
   Repository revision:	1.1113	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1068	Tue Jan 25 00:55:20 2000
   Repository revision:	1.1068	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1028	Mon Jan 24 23:32:30 2000
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.1009	Mon Jan 24 23:50:06 2000
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/Migration.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1008)
	release-2-1-beta-4       	(revision: 1.1008)
	release-2-1-beta-3       	(revision: 1.1008)
	release-2-1-beta-2       	(revision: 1.1008)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.17	Mon Jan 24 23:05:54 2000
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.12	Mon Jan 24 22:55:01 2000
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1087	Mon Jan 24 23:14:40 2000
   Repository revision:	1.1087	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 24, 19100 @ 19:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/contra/namd2/src

Modified Files:
	Measure.C 
Log Message:
Added radiusOfGyration measurement.


===================================================================
File: Measure.C        	Status: Up-to-date

   Working revision:	1.2	Tue Jan 25 01:22:56 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Measure.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday January 25, 19100 @ 17:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv6781/arch

Modified Files:
	AIX-RS6000-xlC.arch IBM-SP.arch Linux-i686-KCC.arch 
	Linux-i686-g++.arch 
Log Message:
Eliminating switches for socklen_t, using define to set in .arch file.


===================================================================
File: AIX-RS6000-xlC.arch	Status: Up-to-date

   Working revision:	1.2	Tue Jan 25 23:19:05 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000-xlC.arch,v

   Existing Tags:
	release-2-1              	(revision: 1.1)

===================================================================
File: IBM-SP.arch      	Status: Up-to-date

   Working revision:	1.3	Tue Jan 25 23:19:05 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.arch,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Linux-i686-KCC.arch	Status: Up-to-date

   Working revision:	1.2	Tue Jan 25 23:19:05 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-KCC.arch,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Linux-i686-g++.arch	Status: Up-to-date

   Working revision:	1.2	Tue Jan 25 23:19:05 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-g++.arch,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Tuesday January 25, 19100 @ 17:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv6781/src

Modified Files:
	vmdsock.C 
Log Message:
Eliminating switches for socklen_t, using define to set in .arch file.


===================================================================
File: vmdsock.C        	Status: Up-to-date

   Working revision:	1.8	Tue Jan 25 23:19:05 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/vmdsock.C,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Friday January 28, 19100 @ 17:10
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Projects/brunner/NAMD/exit-fix/namd2/src

Modified Files:
	Node.C Node.ci Node.h 
Log Message:
Fixed an exit bug.  The scheduler needs to be stopped on all processors
at the end of a simulation



===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1049	Fri Jan 28 23:09:31 2000
   Repository revision:	1.1049	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1015	Fri Jan 28 23:09:32 2000
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1024	Fri Jan 28 23:09:32 2000
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday January 28, 19100 @ 18:08
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Projects/brunner/NAMD/exit-fix/namd2/src

Modified Files:
	Node.C Node.h Node.ci 
Log Message:
Put back to previous form


===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1050	Sat Jan 29 00:07:18 2000
   Repository revision:	1.1050	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1025	Fri Jan 28 23:32:54 2000
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1016	Fri Jan 28 23:33:08 2000
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday January 28, 19100 @ 18:20
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Projects/brunner/NAMD/exit-fix/namd2/src

Modified Files:
	BackEnd.C BackEnd.h 
Log Message:
The exit procedure should be more reliable now, allowing Converse
to exit cleanly.


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.3	Sat Jan 29 00:17:41 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BackEnd.h        	Status: Up-to-date

   Working revision:	1.3	Fri Jan 28 23:45:45 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/BackEnd.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday January 31, 19100 @ 18:00
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/mdapi/namd2/src

Modified Files:
	BackEnd.C 
Log Message:
Put back timing output.


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.4	Mon Jan 31 23:58:40 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday February 4, 19100 @ 14:54
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ObjectArena.h 
Log Message:
Fixed behavior for large requests.


===================================================================
File: ObjectArena.h    	Status: Up-to-date

   Working revision:	1.3	Fri Feb  4 17:27:34 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ObjectArena.h,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.2)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Tuesday February 8, 19100 @ 12:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ObjectArena.h 
Log Message:
Added option to align arrays to given boundary.


===================================================================
File: ObjectArena.h    	Status: Up-to-date

   Working revision:	1.4	Fri Feb  4 22:54:52 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ObjectArena.h,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.2)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Tuesday February 8, 19100 @ 12:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Make.depends 
Log Message:
Moved ObjectArena.h out of Molecule.h.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.56	Tue Feb  8 18:27:38 2000
   Repository revision:	1.56	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Tuesday February 8, 19100 @ 12:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	ComputeNonbondedBase.h Molecule.C Molecule.h 
Log Message:
Cleaned and tuned exclusion checking.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1050	Tue Feb  8 18:14:05 2000
   Repository revision:	1.1050	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1041	Tue Feb  8 16:46:06 2000
   Repository revision:	1.1041	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1029	Tue Feb  8 00:22:48 2000
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 9, 19100 @ 18:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Major cleanup.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.57	Wed Feb  9 22:34:31 2000
   Repository revision:	1.57	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1107	Tue Feb  8 23:52:16 2000
   Repository revision:	1.1107	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 9, 19100 @ 18:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	AlgSeven.C Compute.C ComputeAngles.C ComputeDihedrals.C 
	ComputeHomeTuples.h ComputeImpropers.C ComputeMap.C 
	ComputePatchPair.C Controller.C Debug.h FreeEnergyLambdMgr.C 
	HomePatchList.h InfoStream.C InfoStream.h LJTable.h 
	LdbCoordinator.C MStream.C Molecule.C Molecule.h 
	NamdOneTools.C NamdState.C NamdTypes.h Node.C Output.C PDB.C 
	PDB.h PDBData.C Parameters.C Parameters.h ParseOptions.C 
	Patch.C Patch.h PmeFFT.C Tensor.h Vector.h common.C common.h 
	main.C mainfunc.C structures.h 
Removed Files:
	HBondPairData.h HBondParam.C HBondParam.h Inform.C Inform.h 
	IntList.h VoidTree.C VoidTree.h 
Log Message:
Major cleanup.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.17	Wed Feb  9 15:58:47 2000
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1023	Wed Feb  9 20:12:04 2000
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1016	Wed Feb  9 16:33:38 2000
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1017	Wed Feb  9 16:33:42 2000
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1016)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1026	Tue Feb  8 22:25:17 2000
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1016	Wed Feb  9 16:33:47 2000
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1023	Wed Feb  9 20:12:37 2000
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1013)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1020	Wed Feb  9 20:05:55 2000
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1114	Wed Feb  9 20:02:23 2000
   Repository revision:	1.1114	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Debug.h          	Status: Up-to-date

   Working revision:	1.1006	Wed Feb  9 17:14:56 2000
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/Debug.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: FreeEnergyLambdMgr.C	Status: Up-to-date

   Working revision:	1.7	Wed Feb  9 16:35:35 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/FreeEnergyLambdMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: HomePatchList.h  	Status: Up-to-date

   Working revision:	1.1006	Wed Feb  9 21:53:20 2000
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/HomePatchList.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: InfoStream.C     	Status: Up-to-date

   Working revision:	1.1005	Wed Feb  9 17:27:01 2000
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/InfoStream.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1004)
	release-2-1-beta-4       	(revision: 1.1004)
	release-2-1-beta-3       	(revision: 1.1004)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1007	Wed Feb  9 17:25:56 2000
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/InfoStream.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.h        	Status: Up-to-date

   Working revision:	1.1005	Tue Feb  8 22:33:56 2000
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/LJTable.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1004)
	release-2-1-beta-4       	(revision: 1.1004)
	release-2-1-beta-3       	(revision: 1.1004)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.40	Wed Feb  9 20:07:19 2000
   Repository revision:	1.40	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: MStream.C        	Status: Up-to-date

   Working revision:	1.9	Wed Feb  9 20:08:50 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/MStream.C,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1042	Tue Feb  8 23:51:14 2000
   Repository revision:	1.1042	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1030	Tue Feb  8 23:41:51 2000
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.24	Wed Feb  9 20:13:59 2000
   Repository revision:	1.24	/Projects/namd2/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-2-1              	(revision: 1.23)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.16)
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1027	Tue Feb  8 22:46:14 2000
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1013	Wed Feb  9 21:48:25 2000
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1012)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1051	Tue Feb  8 22:26:12 2000
   Repository revision:	1.1051	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.34	Wed Feb  9 20:14:44 2000
   Repository revision:	1.34	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1012	Tue Feb  8 23:29:34 2000
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.h            	Status: Up-to-date

   Working revision:	1.1006	Tue Feb  8 23:30:16 2000
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/PDB.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.C        	Status: Up-to-date

   Working revision:	1.1010	Wed Feb  9 16:56:47 2000
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/PDBData.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1009)
	release-2-1-beta-4       	(revision: 1.1009)
	release-2-1-beta-3       	(revision: 1.1009)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1017	Wed Feb  9 16:54:44 2000
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.1008	Tue Feb  8 23:39:00 2000
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/Parameters.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1016	Wed Feb  9 16:55:52 2000
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1031	Wed Feb  9 21:49:24 2000
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1029)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1025)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1016	Wed Feb  9 21:49:27 2000
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1012)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PmeFFT.C         	Status: Up-to-date

   Working revision:	1.6	Wed Feb  9 16:57:26 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/PmeFFT.C,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: Tensor.h         	Status: Up-to-date

   Working revision:	1.5	Wed Feb  9 17:25:48 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/Tensor.h,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.1)

===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.1008	Wed Feb  9 17:25:13 2000
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/Vector.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1007)
	release-2-1-beta-3       	(revision: 1.1007)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1032	Wed Feb  9 16:34:19 2000
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1031	Wed Feb  9 16:30:27 2000
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1024)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1029	Wed Feb  9 17:39:39 2000
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: mainfunc.C       	Status: Up-to-date

   Working revision:	1.6	Wed Feb  9 21:33:08 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/mainfunc.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: structures.h     	Status: Up-to-date

   Working revision:	1.1007	Tue Feb  8 23:40:09 2000
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/structures.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file HBondPairData.h		Status: Up-to-date

   Working revision:	No entry for HBondPairData.h
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/Attic/HBondPairData.h,v

===================================================================
File: no file HBondParam.C		Status: Up-to-date

   Working revision:	No entry for HBondParam.C
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/Attic/HBondParam.C,v

===================================================================
File: no file HBondParam.h		Status: Up-to-date

   Working revision:	No entry for HBondParam.h
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/Attic/HBondParam.h,v

===================================================================
File: no file Inform.C		Status: Up-to-date

   Working revision:	No entry for Inform.C
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/Attic/Inform.C,v

===================================================================
File: no file Inform.h		Status: Up-to-date

   Working revision:	No entry for Inform.h
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/Attic/Inform.h,v

===================================================================
File: no file IntList.h		Status: Up-to-date

   Working revision:	No entry for IntList.h
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/Attic/IntList.h,v

===================================================================
File: no file VoidTree.C		Status: Up-to-date

   Working revision:	No entry for VoidTree.C
   Repository revision:	1.1002	/Projects/namd2/cvsroot/namd2/src/Attic/VoidTree.C,v

===================================================================
File: no file VoidTree.h		Status: Up-to-date

   Working revision:	No entry for VoidTree.h
   Repository revision:	1.1002	/Projects/namd2/cvsroot/namd2/src/Attic/VoidTree.h,v


****************************************
Date:	Thursday February 10, 19100 @ 14:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Make.depends 
Log Message:
Eliminated lots of iterators.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.58	Thu Feb 10 00:50:19 2000
   Repository revision:	1.58	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Thursday February 10, 19100 @ 14:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	NamdTypes.h 
Log Message:
Eliminated lots of iterators.


===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1014	Thu Feb 10 00:49:15 2000
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1012)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 10, 19100 @ 16:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Make.depends 
Log Message:
Cleaned out main.h.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.59	Thu Feb 10 21:21:42 2000
   Repository revision:	1.59	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Thursday February 10, 19100 @ 16:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	BackEnd.C CollectionMgr.ci CollectionMgr.h Node.ci Node.h 
	UniqueSetRaw.h WorkDistrib.ci WorkDistrib.h main.ci main.h 
Log Message:
Cleaned out main.h.


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.5	Thu Feb 10 20:38:42 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: CollectionMgr.ci 	Status: Up-to-date

   Working revision:	1.1006	Thu Feb 10 20:28:05 2000
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1017	Thu Feb 10 20:35:41 2000
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1017	Thu Feb 10 20:57:02 2000
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1026	Thu Feb 10 21:13:50 2000
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: UniqueSetRaw.h   	Status: Up-to-date

   Working revision:	1.4	Thu Feb 10 21:17:20 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/UniqueSetRaw.h,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1011	Thu Feb 10 20:23:13 2000
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1019	Thu Feb 10 20:23:50 2000
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.1006	Thu Feb 10 20:56:53 2000
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/main.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.h           	Status: Up-to-date

   Working revision:	1.1007	Thu Feb 10 21:20:10 2000
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/main.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 10, 19100 @ 16:52
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Projects/brunner/NAMD/namd2/src

Modified Files:
	BackEnd.C 
Log Message:
Removed an extra CmiFree at exit


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.6	Thu Feb 10 22:52:11 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday February 10, 19100 @ 17:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2

Modified Files:
	Make.depends 
Log Message:
Removed many .decl.h files.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.60	Thu Feb 10 23:26:24 2000
   Repository revision:	1.60	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Thursday February 10, 19100 @ 17:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/production/namd2/src

Modified Files:
	CollectionMgr.ci Node.ci ReductionMgr.h WorkDistrib.ci main.ci 
Log Message:
Removed many .decl.h dependencies.


===================================================================
File: CollectionMgr.ci 	Status: Up-to-date

   Working revision:	1.1007	Thu Feb 10 23:18:25 2000
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1018	Thu Feb 10 23:18:28 2000
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1022	Thu Feb 10 23:14:01 2000
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1012	Thu Feb 10 23:18:38 2000
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.1007	Thu Feb 10 23:25:02 2000
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/main.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 14, 19100 @ 17:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory titan:/tmp/jim/namd2/src

Modified Files:
	main.ci 
Log Message:
Gotta leave those externs in.


===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.1008	Mon Feb 14 22:59:33 2000
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/main.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 14, 19100 @ 17:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory titan:/tmp/jim/namd2/src

Modified Files:
	ScriptTcl.C 
Log Message:
Now produces decent Tcl errors.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.18	Mon Feb 14 23:25:26 2000
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Tuesday February 15, 19100 @ 10:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Make.depends 
Log Message:
Additional dependencies from externs in main.ci.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.61	Tue Feb 15 16:22:37 2000
   Repository revision:	1.61	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Thursday February 17, 19100 @ 9:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	AIX-RS6000.tcl HPUX.tcl Linux-i686.tcl Origin2000.tcl 
	Solaris-Sparc.tcl Solaris-i686.tcl T3E.tcl Tru64-Alpha.tcl 
Log Message:
Specified -ltcl8.1 to avoid linking to random libtcl.so files.


===================================================================
File: AIX-RS6000.tcl   	Status: Up-to-date

   Working revision:	1.2	Thu Feb 17 15:40:59 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000.tcl,v

   Existing Tags:
	release-2-1              	(revision: 1.1)

===================================================================
File: HPUX.tcl         	Status: Up-to-date

   Working revision:	1.2	Thu Feb 17 15:41:03 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/HPUX.tcl,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Linux-i686.tcl   	Status: Up-to-date

   Working revision:	1.2	Thu Feb 17 15:41:13 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.tcl,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Origin2000.tcl   	Status: Up-to-date

   Working revision:	1.2	Thu Feb 17 15:46:38 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Origin2000.tcl,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Solaris-Sparc.tcl	Status: Up-to-date

   Working revision:	1.2	Thu Feb 17 15:41:22 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc.tcl,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Solaris-i686.tcl 	Status: Up-to-date

   Working revision:	1.2	Thu Feb 17 15:41:25 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Solaris-i686.tcl,v

   Existing Tags:
	release-2-1              	(revision: 1.1)

===================================================================
File: T3E.tcl          	Status: Up-to-date

   Working revision:	1.2	Thu Feb 17 15:45:36 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/T3E.tcl,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Tru64-Alpha.tcl  	Status: Up-to-date

   Working revision:	1.2	Thu Feb 17 15:37:06 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha.tcl,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Thursday February 17, 19100 @ 9:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeAngles.C ComputeDihedrals.C ComputeFreeEnergy.C 
	ComputeGlobal.C ComputeGlobalEasy.C ComputeGlobalMaster.C 
	ComputeIMD.C ComputeImpropers.C ComputeSMD.C ComputeTcl.C 
	HomePatch.C Lattice.h ResizeArray.h Sequencer.C 
	SimParameters.h Vector.h WorkDistrib.C 
Log Message:
Eliminated initialization of Vector to zeros.


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1017	Tue Feb 15 19:19:11 2000
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1018	Tue Feb 15 19:20:22 2000
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1016)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.23	Tue Feb 15 20:33:50 2000
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	release-2-1              	(revision: 1.21)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.20)
	release-2-1-beta-1       	(revision: 1.18)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.14)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.12)

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.21	Tue Feb 15 20:09:01 2000
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeGlobalEasy.C	Status: Up-to-date

   Working revision:	1.8	Tue Feb 15 20:35:25 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalEasy.C,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: ComputeGlobalMaster.C	Status: Up-to-date

   Working revision:	1.8	Tue Feb 15 20:36:06 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMaster.C,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.10	Tue Feb 15 20:36:37 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1017	Tue Feb 15 19:21:01 2000
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.11	Tue Feb 15 20:37:34 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.19	Tue Feb 15 20:39:56 2000
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-1              	(revision: 1.17)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.15)
	release-2-1-beta-2       	(revision: 1.14)
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1069	Tue Feb 15 19:31:44 2000
   Repository revision:	1.1069	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1014	Tue Feb 15 16:46:45 2000
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.6	Tue Feb 15 20:30:08 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ResizeArray.h,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1088	Tue Feb 15 19:13:07 2000
   Repository revision:	1.1088	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1053	Tue Feb 15 19:14:58 2000
   Repository revision:	1.1053	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.1009	Wed Feb 16 22:38:43 2000
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/Vector.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1007)
	release-2-1-beta-3       	(revision: 1.1007)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1078	Tue Feb 15 17:51:00 2000
   Repository revision:	1.1078	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 17, 19100 @ 11:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Linux-i686.tcl Solaris-Sparc.tcl 
Log Message:
Eliminated -ldl flag (not needed with proper library).


===================================================================
File: Linux-i686.tcl   	Status: Up-to-date

   Working revision:	1.3	Thu Feb 17 16:21:00 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.tcl,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Solaris-Sparc.tcl	Status: Up-to-date

   Working revision:	1.3	Thu Feb 17 16:22:05 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc.tcl,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Thursday February 17, 19100 @ 11:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Origin2000.tcl 
Log Message:
Should find Tcl in /Projects/namd2 or $(HOME) now.


===================================================================
File: Origin2000.tcl   	Status: Up-to-date

   Working revision:	1.3	Thu Feb 17 16:52:13 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Origin2000.tcl,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Thursday February 17, 19100 @ 11:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	PDBData.h ParseOptions.h 
Log Message:
Eliminated small compile glitches.


===================================================================
File: PDBData.h        	Status: Up-to-date

   Working revision:	1.1007	Thu Feb 17 16:35:51 2000
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/PDBData.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ParseOptions.h   	Status: Up-to-date

   Working revision:	1.1005	Thu Feb 17 16:47:32 2000
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/ParseOptions.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1004)
	release-2-1-beta-4       	(revision: 1.1004)
	release-2-1-beta-3       	(revision: 1.1004)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 17, 19100 @ 12:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv8700

Added Files:
	IBM-SP.tcl 
Log Message:
Added TCL on SP.


===================================================================
File: IBM-SP.tcl       	Status: Up-to-date

   Working revision:	1.1	Thu Feb 17 18:50:31 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.tcl,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday February 17, 19100 @ 13:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Origin2000.fftw 
Added Files:
	IBM-SP.fftw 
Log Message:
Cleaning up FFTW builds.


===================================================================
File: IBM-SP.fftw      	Status: Up-to-date

   Working revision:	1.1	Thu Feb 17 19:05:31 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Origin2000.fftw  	Status: Up-to-date

   Working revision:	1.3	Thu Feb 17 19:07:25 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Origin2000.fftw,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Thursday February 17, 19100 @ 13:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv14023

Added Files:
	AIX-RS6000.fftw 
Log Message:
Added FFTW for AIX.


===================================================================
File: AIX-RS6000.fftw  	Status: Up-to-date

   Working revision:	1.1	Thu Feb 17 19:41:19 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000.fftw,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 23, 19100 @ 14:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Eliminated unused/untested NOHGROUPING code.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1051	Wed Feb 23 20:40:52 2000
   Repository revision:	1.1051	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 23, 19100 @ 16:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Eliminated always-on HGROUPING macros.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1052	Wed Feb 23 20:48:43 2000
   Repository revision:	1.1052	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 25, 19100 @ 17:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	CollectionMaster.h CollectionMgr.h HomePatch.C 
	HomePatchTypes.h NamdTypes.h ResizeArray.h 
Log Message:
Eliminated prototype-based find() and del() from ResizeArray.


===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1021	Fri Feb 25 23:28:08 2000
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1020)
	release-2-1-beta-4       	(revision: 1.1020)
	release-2-1-beta-3       	(revision: 1.1020)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1018	Fri Feb 25 22:47:57 2000
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1070	Fri Feb 25 23:03:30 2000
   Repository revision:	1.1070	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatchTypes.h 	Status: Up-to-date

   Working revision:	1.1007	Fri Feb 25 22:54:30 2000
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/HomePatchTypes.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1015	Fri Feb 25 22:11:56 2000
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1012)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.7	Fri Feb 25 23:09:59 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ResizeArray.h,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Saturday February 26, 19100 @ 11:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Communicate.C Communicate.h MStream.C MStream.h ResizeArray.h 
	ResizeArrayRaw.h 
Log Message:
Trimmed includes.


===================================================================
File: Communicate.C    	Status: Up-to-date

   Working revision:	1.1007	Sat Feb 26 17:43:42 2000
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/Communicate.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Communicate.h    	Status: Up-to-date

   Working revision:	1.1006	Sat Feb 26 17:46:09 2000
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/Communicate.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: MStream.C        	Status: Up-to-date

   Working revision:	1.10	Sat Feb 26 17:42:32 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/MStream.C,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)

===================================================================
File: MStream.h        	Status: Up-to-date

   Working revision:	1.10	Sat Feb 26 17:46:16 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/MStream.h,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.1)

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.8	Sat Feb 26 17:45:04 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ResizeArray.h,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.7	Sat Feb 26 17:45:09 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Saturday February 26, 19100 @ 12:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	PmeKSpace.C 
Log Message:
Fixed missing abs() definition.


===================================================================
File: PmeKSpace.C      	Status: Up-to-date

   Working revision:	1.4	Sat Feb 26 18:24:44 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/PmeKSpace.C,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Saturday February 26, 19100 @ 12:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/pvm3
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/pvm3

Modified Files:
	pvmc_buf.c 
Log Message:
Fixed #ifdef not at column 1.


===================================================================
File: pvmc_buf.c       	Status: Up-to-date

   Working revision:	1.9	Sat Feb 26 18:31:16 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/pvm3/pvmc_buf.c,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.8)
	development-4            	(revision: 1.8)
	development-3            	(revision: 1.1)


****************************************
Date:	Saturday February 26, 19100 @ 12:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Patch.C Patch.h 
Log Message:
Eliminated unused code.


===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1032	Sat Feb 26 18:43:57 2000
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1029)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1025)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1017	Sat Feb 26 18:43:54 2000
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1012)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 28, 19100 @ 10:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Output.C 
Log Message:
Fixed DCD behavior for zero timestep runs.


===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.35	Mon Feb 28 16:22:49 2000
   Repository revision:	1.35	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday February 29, 19100 @ 11:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	AtomMap.C AtomMap.h CollectionMgr.C CollectionMgr.h Compute.C 
	Compute.h ComputeAngles.C ComputeBonds.C 
	ComputeCylindricalBC.C ComputeCylindricalBC.h ComputeDPME.C 
	ComputeDPMTA.C ComputeDihedrals.C ComputeFullDirect.C 
	ComputeGlobal.C ComputeHomePatch.C ComputeHomePatch.h 
	ComputeHomePatches.h ComputeHomeTuples.h ComputeImpropers.C 
	ComputeNonbondedBase.h ComputeNonbondedExcl.C 
	ComputeNonbondedPair.C ComputeNonbondedPair.h 
	ComputeNonbondedSelf.C ComputeNonbondedSelf.h 
	ComputeNonbondedUtil.h ComputePatch.C ComputePatch.h 
	ComputePatchPair.C ComputePatchPair.h ComputePme.C 
	ComputeRestraints.C ComputeRestraints.h ComputeSphericalBC.C 
	ComputeSphericalBC.h Controller.C Controller.h HomePatch.C 
	HomePatch.h LJTable.C LJTable.h Lattice.h Migration.h 
	NamdTypes.h Patch.C Patch.h PatchMgr.C PatchMgr.h 
	PositionBox.h PositionOwnerBox.h ProxyMgr.C ProxyMgr.h 
	ProxyPatch.C Sequencer.C WorkDistrib.C 
Log Message:
Eliminated multiple arrays in Patch and HomePatch.


===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1013	Tue Feb 29 17:08:19 2000
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/AtomMap.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1012)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: AtomMap.h        	Status: Up-to-date

   Working revision:	1.1008	Sun Feb 27 20:22:45 2000
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/AtomMap.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1007)
	release-2-1-beta-3       	(revision: 1.1007)
	release-2-1-beta-2       	(revision: 1.1007)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1019	Sun Feb 27 21:43:41 2000
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1019	Sun Feb 27 21:34:52 2000
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1024	Mon Feb 28 20:37:03 2000
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1014	Mon Feb 28 20:35:59 2000
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1018	Sat Feb 26 19:37:15 2000
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1015	Sat Feb 26 19:38:06 2000
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1014)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeCylindricalBC.C	Status: Up-to-date

   Working revision:	1.11	Sat Feb 26 19:48:26 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ComputeCylindricalBC.C,v

   Existing Tags:
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)

===================================================================
File: ComputeCylindricalBC.h	Status: Up-to-date

   Working revision:	1.9	Sat Feb 26 19:46:14 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ComputeCylindricalBC.h,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.5)
	development-4            	(revision: 1.5)

===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.22	Sat Feb 26 21:09:57 2000
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-1              	(revision: 1.20)
	release-2-1-beta-4       	(revision: 1.20)
	release-2-1-beta-3       	(revision: 1.20)
	release-2-1-beta-2       	(revision: 1.20)
	release-2-1-beta-1       	(revision: 1.17)
	release-2-0-pre-charm-syntax	(revision: 1.10)
	release-2-0              	(revision: 1.10)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1065	Sat Feb 26 21:11:37 2000
   Repository revision:	1.1065	/Projects/namd2/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1063)
	release-2-1-beta-4       	(revision: 1.1063)
	release-2-1-beta-3       	(revision: 1.1063)
	release-2-1-beta-2       	(revision: 1.1063)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1054)
	release-2-0              	(revision: 1.1053)
	release-2-0-beta-3       	(revision: 1.1053)
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1019	Sat Feb 26 19:38:42 2000
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1016)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1028	Sat Feb 26 21:12:45 2000
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1023)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1012)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.22	Sun Feb 27 19:08:07 2000
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeHomePatch.C	Status: Up-to-date

   Working revision:	1.3	Sun Feb 27 19:02:50 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.1)

===================================================================
File: ComputeHomePatch.h	Status: Up-to-date

   Working revision:	1.2	Sun Feb 27 19:01:06 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatch.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)
	release-2-1-beta-3       	(revision: 1.1)
	release-2-1-beta-2       	(revision: 1.1)

===================================================================
File: ComputeHomePatches.h	Status: Up-to-date

   Working revision:	1.1011	Sat Feb 26 21:16:19 2000
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatches.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1027	Tue Feb 29 16:38:53 2000
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1018	Sat Feb 26 19:38:49 2000
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1053	Mon Feb 28 21:10:21 2000
   Repository revision:	1.1053	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.C	Status: Up-to-date

   Working revision:	1.1028	Sat Feb 26 21:03:17 2000
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedExcl.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1025)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1023)
	release-2-0-pre-charm-syntax	(revision: 1.1021)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1021)
	release-alpha-1          	(revision: 1.1019)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1023	Sat Feb 26 20:07:38 2000
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1012	Sat Feb 26 20:01:09 2000
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1019	Sat Feb 26 20:06:17 2000
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.1011	Sat Feb 26 20:00:54 2000
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1025	Sat Feb 26 20:05:10 2000
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1020	Sat Feb 26 19:42:48 2000
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1014)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.1010	Sat Feb 26 19:41:02 2000
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/ComputePatch.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1009)
	release-2-1-beta-4       	(revision: 1.1009)
	release-2-1-beta-3       	(revision: 1.1009)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1021	Sat Feb 26 19:45:20 2000
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.1010	Sat Feb 26 19:45:31 2000
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/ComputePatchPair.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1009)
	release-2-1-beta-4       	(revision: 1.1009)
	release-2-1-beta-3       	(revision: 1.1009)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.11	Sat Feb 26 21:18:54 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputeRestraints.C	Status: Up-to-date

   Working revision:	1.11	Sat Feb 26 21:20:53 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ComputeRestraints.C,v

   Existing Tags:
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeRestraints.h	Status: Up-to-date

   Working revision:	1.8	Sat Feb 26 21:16:45 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ComputeRestraints.h,v

   Existing Tags:
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeSphericalBC.C	Status: Up-to-date

   Working revision:	1.5	Sat Feb 26 19:52:13 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeSphericalBC.C,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeSphericalBC.h	Status: Up-to-date

   Working revision:	1.4	Sat Feb 26 19:51:01 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeSphericalBC.h,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1115	Tue Feb 29 16:39:26 2000
   Repository revision:	1.1115	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1034	Mon Feb 28 21:57:29 2000
   Repository revision:	1.1034	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1071	Tue Feb 29 16:34:09 2000
   Repository revision:	1.1071	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1029	Mon Feb 28 21:38:06 2000
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.1011	Mon Feb 28 19:38:24 2000
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/LJTable.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.h        	Status: Up-to-date

   Working revision:	1.1006	Mon Feb 28 19:50:02 2000
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/LJTable.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1004)
	release-2-1-beta-4       	(revision: 1.1004)
	release-2-1-beta-3       	(revision: 1.1004)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1015	Sat Feb 26 19:28:58 2000
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Migration.h      	Status: Up-to-date

   Working revision:	1.1010	Tue Feb 29 00:37:38 2000
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/Migration.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1008)
	release-2-1-beta-4       	(revision: 1.1008)
	release-2-1-beta-3       	(revision: 1.1008)
	release-2-1-beta-2       	(revision: 1.1008)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1016	Mon Feb 28 19:26:22 2000
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1012)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1033	Mon Feb 28 21:00:56 2000
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1029)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1025)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1018	Mon Feb 28 21:05:08 2000
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1012)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1022	Sun Feb 27 20:55:15 2000
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1016	Sun Feb 27 20:54:27 2000
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PositionBox.h    	Status: Up-to-date

   Working revision:	1.1006	Sat Feb 26 19:23:08 2000
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/PositionBox.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: PositionOwnerBox.h	Status: Up-to-date

   Working revision:	1.1011	Sat Feb 26 19:25:37 2000
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/PositionOwnerBox.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1030	Sun Feb 27 21:00:44 2000
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1023)
	release-2-0              	(revision: 1.1023)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1023)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1016	Sun Feb 27 19:36:37 2000
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1024	Tue Feb 29 17:06:20 2000
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1023)
	release-2-1-beta-4       	(revision: 1.1023)
	release-2-1-beta-3       	(revision: 1.1023)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1089	Mon Feb 28 21:40:36 2000
   Repository revision:	1.1089	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1079	Mon Feb 28 20:46:49 2000
   Repository revision:	1.1079	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 1, 19100 @ 17:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Patch.C ResizeArray.h ResizeArrayRaw.h 
Log Message:
ResizeArray aligns data to 32-byte boundaries.


===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1034	Wed Mar  1 21:15:22 2000
   Repository revision:	1.1034	/Projects/namd2/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1029)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1025)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.9	Wed Mar  1 21:19:16 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ResizeArray.h,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.8	Wed Mar  1 22:57:58 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Thursday March 2, 19100 @ 14:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv6807/src

Modified Files:
	Parameters.C 
Log Message:
Ignore VDW params w/ -'ve epsilon.


===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1018	Thu Mar  2 20:47:25 2000
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 2, 19100 @ 14:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv6832/src

Modified Files:
	LJTable.C 
Log Message:
Slightly better sign test.


===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.1012	Thu Mar  2 20:48:56 2000
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/LJTable.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 5, 19100 @ 20:19
Author:	justin

Update of /Projects/namd2/cvsroot/namd2/src
In directory urbana.ks.uiuc.edu:/Projects/r5/bioinfo/justin/namd2/namd2/src

Modified Files:
	imd.C 
Log Message:
Fixed a problem with the handshake that occurs on little-endian machines,
same fix as in VMD.


===================================================================
File: imd.C            	Status: Up-to-date

   Working revision:	1.7	Sat Mar  4 18:34:37 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/imd.C,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Sunday March 5, 19100 @ 21:30
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory titan:/tmp/namd2/src

Modified Files:
	ComputeIMD.C vmdsock.C vmdsock.h 
Log Message:
vmdsock_accept now returns a new socket handle rather than overwriting
the old file descriptor.


===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.11	Mon Mar  6 03:19:36 2000
   Repository revision:	1.11	/home/cvs/namd/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: vmdsock.C        	Status: Up-to-date

   Working revision:	1.9	Mon Mar  6 03:21:05 2000
   Repository revision:	1.9	/home/cvs/namd/cvsroot/namd2/src/vmdsock.C,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: vmdsock.h        	Status: Up-to-date

   Working revision:	1.5	Mon Mar  6 03:17:31 2000
   Repository revision:	1.5	/home/cvs/namd/cvsroot/namd2/src/vmdsock.h,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Monday March 6, 19100 @ 18:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile 
Log Message:
Added usage tracking code.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1108	Tue Mar  7 00:10:44 2000
   Repository revision:	1.1108	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 6, 19100 @ 18:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	main.C 
Log Message:
Added usage tracking code.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1030	Tue Mar  7 00:15:23 2000
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 7, 19100 @ 10:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	main.C 
Log Message:
Changed order of includes for T3E.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1031	Tue Mar  7 16:37:39 2000
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 7, 19100 @ 10:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	main.C 
Log Message:
Added include file for AIX.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1032	Tue Mar  7 16:44:49 2000
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 7, 19100 @ 13:42
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv12234/src

Modified Files:
	ResizeArrayRaw.h 
Log Message:
Fixed AIX compile problem.


===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.9	Tue Mar  7 19:42:28 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Tuesday March 7, 19100 @ 14:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv12364

Modified Files:
	config 
Log Message:
Added 'debug' option to command line.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.12	Tue Mar  7 20:27:24 2000
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Sunday March 12, 19100 @ 15:33
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2
In directory bastogne.ks.uiuc.edu:/Projects/brunner/NAMD/namd2

Modified Files:
	Makefile Make.depends 
Log Message:
Added NamdCentLB.C, which uses new load balancing framework inside of
charm++


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1109	Sun Mar 12 21:00:41 2000
   Repository revision:	1.1109	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.62	Wed Feb 16 22:35:56 2000
   Repository revision:	1.62	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Sunday March 12, 19100 @ 15:33
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Projects/brunner/NAMD/namd2/src

Modified Files:
	AlgSeven.C Controller.C LdbCoordinator.C LdbCoordinator.ci 
	LdbCoordinator.h Node.C Node.ci Rebalancer.C elements.h 
Added Files:
	NamdCentLB.C NamdCentLB.ci NamdCentLB.h 
Log Message:
Added NamdCentLB.C, and modified other files to use new load balancing
framework inside of Charm++


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.1	Mon Mar  6 23:41:46 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdCentLB.ci    	Status: Up-to-date

   Working revision:	1.1	Tue Feb 15 19:37:55 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.ci,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdCentLB.h     	Status: Up-to-date

   Working revision:	1.1	Wed Feb 16 23:27:20 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.18	Tue Feb 22 00:37:25 2000
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1116	Tue Feb 29 22:51:18 2000
   Repository revision:	1.1116	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.41	Tue Feb 29 22:50:51 2000
   Repository revision:	1.41	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: LdbCoordinator.ci	Status: Up-to-date

   Working revision:	1.9	Tue Feb 29 02:02:54 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.2)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.28	Tue Feb 29 22:48:35 2000
   Repository revision:	1.28	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-2-1              	(revision: 1.26)
	release-2-1-beta-4       	(revision: 1.26)
	release-2-1-beta-3       	(revision: 1.26)
	release-2-1-beta-2       	(revision: 1.26)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.23)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1052	Thu Feb 10 22:51:18 2000
   Repository revision:	1.1052	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1019	Thu Feb 17 17:51:37 2000
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.23	Tue Feb 22 01:00:32 2000
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: elements.h       	Status: Up-to-date

   Working revision:	1.5	Wed Feb 16 23:13:14 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/elements.h,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)


****************************************
Date:	Monday March 13, 19100 @ 10:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory titan:/tmp/jim/namd2

Modified Files:
	Makefile 
Log Message:
Cleanup load balance changes.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1110	Mon Mar 13 15:27:22 2000
   Repository revision:	1.1110	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 13, 19100 @ 10:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory titan:/tmp/jim/namd2/src

Modified Files:
	AlgSeven.C NamdCentLB.C Node.ci Rebalancer.C 
Log Message:
Cleanup load balance changes.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.19	Mon Mar 13 16:02:18 2000
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.2	Mon Mar 13 16:16:13 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1020	Mon Mar 13 15:27:52 2000
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.24	Mon Mar 13 15:56:26 2000
   Repository revision:	1.24	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)


****************************************
Date:	Monday March 13, 19100 @ 10:53
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Make.depends 
Log Message:
Redid dependencies after fixing Node.ci.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.63	Mon Mar 13 16:48:43 2000
   Repository revision:	1.63	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Monday March 13, 19100 @ 16:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory oberon.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	main.C 
Log Message:
Standard functions for getting user name.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1033	Mon Mar 13 22:22:27 2000
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 14, 19100 @ 13:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv17960/src

Modified Files:
	AtomMap.C AtomMap.h HomePatch.C Patch.C ProxyPatch.C 
Log Message:
AtomMap uses iterators.


===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1014	Tue Mar 14 19:15:03 2000
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/AtomMap.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1012)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: AtomMap.h        	Status: Up-to-date

   Working revision:	1.1009	Tue Mar 14 19:15:03 2000
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/AtomMap.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1007)
	release-2-1-beta-3       	(revision: 1.1007)
	release-2-1-beta-2       	(revision: 1.1007)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1072	Tue Mar 14 19:15:03 2000
   Repository revision:	1.1072	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1035	Tue Mar 14 19:15:03 2000
   Repository revision:	1.1035	/Projects/namd2/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1029)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1025)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1025	Tue Mar 14 19:15:03 2000
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1023)
	release-2-1-beta-4       	(revision: 1.1023)
	release-2-1-beta-3       	(revision: 1.1023)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 14, 19100 @ 13:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv18000/src

Modified Files:
	NamdTypes.h 
Log Message:
Added constructors and assignment to CompAtom for IBM's broken compiler.


===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1017	Tue Mar 14 19:17:09 2000
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1012)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 14, 19100 @ 13:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv18036/src

Modified Files:
	AtomMap.C 
Log Message:
Small bug.


===================================================================
File: AtomMap.C        	Status: Up-to-date

   Working revision:	1.1015	Tue Mar 14 19:21:33 2000
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/AtomMap.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1012)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 14, 19100 @ 13:38
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv18104/src

Modified Files:
	OwnerBox.h PositionOwnerBox.h 
Log Message:
Now completely inlined.


===================================================================
File: OwnerBox.h       	Status: Up-to-date

   Working revision:	1.6	Tue Mar 14 19:38:51 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/OwnerBox.h,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: PositionOwnerBox.h	Status: Up-to-date

   Working revision:	1.1012	Tue Mar 14 19:38:51 2000
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/PositionOwnerBox.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.2.2)
	development-0            	(revision: 1.2)


****************************************
Date:	Tuesday March 14, 19100 @ 13:40
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv18132/src

Modified Files:
	packmsg.h 
Log Message:
Completely inlined.


===================================================================
File: packmsg.h        	Status: Up-to-date

   Working revision:	1.6	Tue Mar 14 19:40:05 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/packmsg.h,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)


****************************************
Date:	Tuesday March 14, 19100 @ 22:00
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Projects/brunner/NAMD/namd2/src

Modified Files:
	LdbCoordinator.C LdbCoordinator.h NamdCentLB.C 
Log Message:
A few clean-up changes



===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.42	Sun Mar 12 22:01:32 2000
   Repository revision:	1.42	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.29	Sun Mar 12 22:01:47 2000
   Repository revision:	1.29	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-2-1              	(revision: 1.26)
	release-2-1-beta-4       	(revision: 1.26)
	release-2-1-beta-3       	(revision: 1.26)
	release-2-1-beta-2       	(revision: 1.26)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.23)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.3	Wed Mar 15 03:59:32 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday March 14, 19100 @ 23:01
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Projects/brunner/NAMD/namd2/src

Modified Files:
	AlgSeven.C main.C 
Log Message:
A few changes.  Deleted some unused code in AlgSeven, and surrounded
packet stuff with an ifndef NOHOSTNAME, so it works on ARed.




===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.20	Wed Mar 15 04:18:09 2000
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1034	Wed Mar 15 04:50:14 2000
   Repository revision:	1.1034	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 15, 19100 @ 11:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv19045/src

Modified Files:
	LdbCoordinator.C LdbCoordinator.h 
Log Message:
Eliminated bool.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.43	Wed Mar 15 17:30:54 2000
   Repository revision:	1.43	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.30	Wed Mar 15 17:30:54 2000
   Repository revision:	1.30	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-2-1              	(revision: 1.26)
	release-2-1-beta-4       	(revision: 1.26)
	release-2-1-beta-3       	(revision: 1.26)
	release-2-1-beta-2       	(revision: 1.26)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.23)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)


****************************************
Date:	Wednesday March 15, 19100 @ 15:55
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	imd.C 
Log Message:
Eliminated casting away const.


===================================================================
File: imd.C            	Status: Up-to-date

   Working revision:	1.8	Wed Mar 15 21:54:56 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/imd.C,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Wednesday March 15, 19100 @ 17:04
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv29399

Modified Files:
	Rebalancer.C 
Log Message:
aff same fix as in AlgSeven.c in Rebalancer.C: refine().
pnly assign bestP to p when load of p is smaller than bestP


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.25	Wed Mar 15 23:04:33 2000
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)


****************************************
Date:	Thursday March 16, 19100 @ 10:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile 
Log Message:
Now using pvm lib in charm source.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1111	Thu Mar 16 16:08:44 2000
   Repository revision:	1.1111	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 16, 19100 @ 10:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/pvm3
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/pvm3

Removed Files:
	Makefile pvm3.h pvmc.h pvmc_buf.c pvmc_comm.c pvmc_conv.c 
	pvmc_groups.c pvmc_main.c pvmc_pack.c pvmctest.c 
Log Message:
Now using pvm lib in charm source.


===================================================================
File: no file Makefile		Status: Up-to-date

   Working revision:	No entry for Makefile
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/pvm3/Attic/Makefile,v

===================================================================
File: no file pvm3.h		Status: Up-to-date

   Working revision:	No entry for pvm3.h
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/pvm3/Attic/pvm3.h,v

===================================================================
File: no file pvmc.h		Status: Up-to-date

   Working revision:	No entry for pvmc.h
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/pvm3/Attic/pvmc.h,v

===================================================================
File: no file pvmc_buf.c		Status: Up-to-date

   Working revision:	No entry for pvmc_buf.c
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/pvm3/Attic/pvmc_buf.c,v

===================================================================
File: no file pvmc_comm.c		Status: Up-to-date

   Working revision:	No entry for pvmc_comm.c
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/pvm3/Attic/pvmc_comm.c,v

===================================================================
File: no file pvmc_conv.c		Status: Up-to-date

   Working revision:	No entry for pvmc_conv.c
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/pvm3/Attic/pvmc_conv.c,v

===================================================================
File: no file pvmc_groups.c		Status: Up-to-date

   Working revision:	No entry for pvmc_groups.c
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/pvm3/Attic/pvmc_groups.c,v

===================================================================
File: no file pvmc_main.c		Status: Up-to-date

   Working revision:	No entry for pvmc_main.c
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/pvm3/Attic/pvmc_main.c,v

===================================================================
File: no file pvmc_pack.c		Status: Up-to-date

   Working revision:	No entry for pvmc_pack.c
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/pvm3/Attic/pvmc_pack.c,v

===================================================================
File: no file pvmctest.c		Status: Up-to-date

   Working revision:	No entry for pvmctest.c
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/pvm3/Attic/pvmctest.c,v


****************************************
Date:	Thursday March 16, 19100 @ 10:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	config 
Log Message:
Now using pvm lib in charm source.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.13	Thu Mar 16 16:20:23 2000
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Thursday March 16, 19100 @ 10:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/dpmta-2.6
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/dpmta-2.6

Modified Files:
	Makefile 
Log Message:
Finds pvm includes again.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.6	Thu Mar 16 16:57:46 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/dpmta-2.6/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Thursday March 16, 19100 @ 10:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/dpmta-2.6/mpole
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/dpmta-2.6/mpole

Modified Files:
	Makefile 
Log Message:
Finds pvm includes again.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.6	Thu Mar 16 16:57:50 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/dpmta-2.6/mpole/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Thursday March 16, 19100 @ 10:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/dpmta-2.6/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/dpmta-2.6/src

Modified Files:
	Makefile.converse 
Log Message:
Finds pvm includes again.


===================================================================
File: Makefile.converse	Status: Up-to-date

   Working revision:	1.7	Thu Mar 16 16:57:53 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/dpmta-2.6/src/Makefile.converse,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Thursday March 16, 19100 @ 11:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile config 
Log Message:
Makearch now includes Make.charm.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1112	Thu Mar 16 17:01:50 2000
   Repository revision:	1.1112	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.14	Thu Mar 16 17:00:34 2000
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Thursday March 16, 19100 @ 11:07
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/dpme2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/dpme2

Modified Files:
	Makefile 
Log Message:
Makearch now includes Make.charm.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.18	Thu Mar 16 17:03:19 2000
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/dpme2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.17)
	release-2-1-beta-4       	(revision: 1.17)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.16)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.13)
	release-2-0-beta-2       	(revision: 1.12)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.5)


****************************************
Date:	Thursday March 16, 19100 @ 11:07
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/dpmta-2.6
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/dpmta-2.6

Modified Files:
	Makefile 
Log Message:
Makearch now includes Make.charm.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.7	Thu Mar 16 17:07:06 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/dpmta-2.6/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Thursday March 16, 19100 @ 11:07
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/dpmta-2.6/mpole
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/dpmta-2.6/mpole

Modified Files:
	Makefile 
Log Message:
Makearch now includes Make.charm.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.7	Thu Mar 16 17:07:09 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/dpmta-2.6/mpole/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Thursday March 16, 19100 @ 11:07
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/dpmta-2.6/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/dpmta-2.6/src

Modified Files:
	Makefile.converse 
Log Message:
Makearch now includes Make.charm.


===================================================================
File: Makefile.converse	Status: Up-to-date

   Working revision:	1.8	Thu Mar 16 17:07:12 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/dpmta-2.6/src/Makefile.converse,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.3)


****************************************
Date:	Thursday March 16, 19100 @ 16:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv16927

Modified Files:
	ResizeArray.h ResizeArrayRaw.h SortableResizeArray.h 
	SortedArray.h UniqueSortedArray.h UniqueSetRaw.h 
Log Message:
Fixed const lies and non-inlines.


===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.10	Thu Mar 16 22:49:48 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ResizeArray.h,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.10	Thu Mar 16 22:49:48 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: SortableResizeArray.h	Status: Up-to-date

   Working revision:	1.4	Thu Mar 16 22:49:48 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/SortableResizeArray.h,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: SortedArray.h    	Status: Up-to-date

   Working revision:	1.4	Thu Mar 16 22:49:48 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/SortedArray.h,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: UniqueSortedArray.h	Status: Up-to-date

   Working revision:	1.4	Thu Mar 16 22:49:48 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/UniqueSortedArray.h,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: UniqueSetRaw.h   	Status: Up-to-date

   Working revision:	1.5	Thu Mar 16 22:49:48 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/UniqueSetRaw.h,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Thursday March 16, 19100 @ 17:29
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	BackEnd.C 
Log Message:
Added message about CPU timing.


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.7	Thu Mar 16 23:07:18 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday March 16, 19100 @ 17:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Node.C WorkDistrib.C 
Log Message:
Eliminated per-node startup messages.


===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1053	Thu Mar 16 23:31:57 2000
   Repository revision:	1.1053	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1080	Thu Mar 16 23:34:26 2000
   Repository revision:	1.1080	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday March 18, 19100 @ 17:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ResizeArrayRaw.h 
Log Message:
Removed duplicate outlined destructor.


===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.11	Sat Mar 18 23:34:03 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Saturday March 18, 19100 @ 18:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	UniqueSetRaw.h 
Log Message:
Eliminated static array in inlined method.


===================================================================
File: UniqueSetRaw.h   	Status: Up-to-date

   Working revision:	1.6	Sun Mar 19 00:28:23 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/UniqueSetRaw.h,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Thursday March 23, 19100 @ 13:20
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv7680

Modified Files:
	BOCgroup.h BackEnd.C Compute.C HomePatch.C ProcessorPrivate.C 
	ProcessorPrivate.h main.ci 
Log Message:
add synchroniztion to Computes in
BOCgroup.h BackEnd.C Compute.C HomePatch.C ProcessorPrivate.C
ProcessorPrivate.h main.ci
useSync is set as default 0 in Sync.C


===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.1008	Thu Mar 23 19:20:47 2000
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/BOCgroup.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1007)
	release-2-1-beta-3       	(revision: 1.1007)
	release-2-1-beta-2       	(revision: 1.1007)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.8	Thu Mar 23 19:20:47 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1025	Thu Mar 23 19:20:47 2000
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1073	Thu Mar 23 19:20:48 2000
   Repository revision:	1.1073	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProcessorPrivate.C	Status: Up-to-date

   Working revision:	1.3	Thu Mar 23 19:20:48 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ProcessorPrivate.C,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.2)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ProcessorPrivate.h	Status: Up-to-date

   Working revision:	1.4	Thu Mar 23 19:20:48 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ProcessorPrivate.h,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.1009	Thu Mar 23 19:20:48 2000
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/main.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 23, 19100 @ 13:21
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv7798

Added Files:
	Sync.C Sync.ci Sync.h 
Log Message:
Synchronization of Computes.


===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.1	Thu Mar 23 19:21:33 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Sync.ci          	Status: Up-to-date

   Working revision:	1.1	Thu Mar 23 19:21:33 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/Sync.ci,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Sync.h           	Status: Up-to-date

   Working revision:	1.1	Thu Mar 23 19:21:33 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/Sync.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday March 23, 19100 @ 13:23
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv7918

Modified Files:
	Make.depends 
Log Message:
updated Make.depends


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.64	Thu Mar 23 19:23:45 2000
   Repository revision:	1.64	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Friday March 24, 19100 @ 10:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory lima.ks.uiuc.edu:/tmp/jim/namd2

Modified Files:
	Makefile 
Log Message:
Changes to build Sync.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1113	Fri Mar 24 16:22:27 2000
   Repository revision:	1.1113	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 24, 19100 @ 11:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/ntport/namd2/src

Modified Files:
	ComputeDPMTA.C ComputeGlobal.C ComputeNonbondedUtil.C 
	ComputeSMD.C ConfigList.C ConfigList.h FreeEnergyMain.C 
	FreeEnergyParse.C FreeEnergyRMgr.C FreeEnergyRestrain.C 
	InfoStream.h LdbCoordinator.C NamdState.C Node.C PDB.C 
	PDBData.C Parameters.C PatchMap.C SimParameters.C Sync.C 
	Vector.h WorkDistrib.C ccsinterface.h common.C common.h 
	dcdlib.C main.C mainfunc.C vmdsock.C vmdsock.h 
Log Message:
Changes for NT port.


===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1066	Wed Mar 22 19:25:28 2000
   Repository revision:	1.1066	/Projects/namd2/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1063)
	release-2-1-beta-4       	(revision: 1.1063)
	release-2-1-beta-3       	(revision: 1.1063)
	release-2-1-beta-2       	(revision: 1.1063)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1054)
	release-2-0              	(revision: 1.1053)
	release-2-0-beta-3       	(revision: 1.1053)
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.23	Wed Mar 22 19:29:49 2000
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1031	Thu Mar 23 23:11:54 2000
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.12	Wed Mar 22 19:29:56 2000
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1016	Wed Mar 22 19:30:02 2000
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ConfigList.h     	Status: Up-to-date

   Working revision:	1.1006	Thu Mar 23 23:15:38 2000
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/ConfigList.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: FreeEnergyMain.C 	Status: Up-to-date

   Working revision:	1.3	Wed Mar 22 19:30:05 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/FreeEnergyMain.C,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.2)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: FreeEnergyParse.C	Status: Up-to-date

   Working revision:	1.9	Wed Mar 22 19:30:09 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/FreeEnergyParse.C,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyRMgr.C 	Status: Up-to-date

   Working revision:	1.6	Wed Mar 22 19:30:13 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyRestrain.C	Status: Up-to-date

   Working revision:	1.9	Wed Mar 22 19:30:17 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRestrain.C,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1008	Tue Mar 21 23:31:27 2000
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/InfoStream.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.44	Wed Mar 22 22:13:33 2000
   Repository revision:	1.44	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1028	Wed Mar 22 21:57:48 2000
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1054	Wed Mar 22 22:03:35 2000
   Repository revision:	1.1054	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1013	Wed Mar 22 22:57:14 2000
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDBData.C        	Status: Up-to-date

   Working revision:	1.1011	Wed Mar 22 22:57:29 2000
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/PDBData.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1009)
	release-2-1-beta-4       	(revision: 1.1009)
	release-2-1-beta-3       	(revision: 1.1009)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1019	Wed Mar 22 22:57:40 2000
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1025	Wed Mar 22 21:58:14 2000
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1101	Wed Mar 22 22:53:48 2000
   Repository revision:	1.1101	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.2	Fri Mar 24 17:07:11 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.1010	Thu Mar 23 23:16:08 2000
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/Vector.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1007)
	release-2-1-beta-3       	(revision: 1.1007)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1081	Wed Mar 22 22:54:47 2000
   Repository revision:	1.1081	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ccsinterface.h   	Status: Up-to-date

   Working revision:	1.6	Wed Mar 22 21:58:35 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ccsinterface.h,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1033	Fri Mar 24 17:22:25 2000
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1032	Tue Mar 21 23:35:11 2000
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1024)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.14	Thu Mar 23 23:05:31 2000
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1035	Wed Mar 22 22:42:35 2000
   Repository revision:	1.1035	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: mainfunc.C       	Status: Up-to-date

   Working revision:	1.7	Wed Mar 22 22:37:28 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/mainfunc.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: vmdsock.C        	Status: Up-to-date

   Working revision:	1.10	Wed Mar 22 22:01:01 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/vmdsock.C,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: vmdsock.h        	Status: Up-to-date

   Working revision:	1.6	Wed Mar 22 22:10:54 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/vmdsock.h,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Friday March 24, 19100 @ 11:54
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/msvc
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/ntport/namd2_orig/msvc

Log Message:
Directory /Projects/namd2/cvsroot/namd2/msvc added to the repository


[input file was '-']

****************************************
Date:	Friday March 24, 19100 @ 11:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/msvc
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/ntport/namd2_orig/msvc

Added Files:
	namd2.dsp namd2.dsw 
Log Message:
MS Visual C++ files.


===================================================================
File: namd2.dsp        	Status: Up-to-date

   Working revision:	1.1	Fri Mar 24 17:26:19 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/msvc/namd2.dsp,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namd2.dsw        	Status: Up-to-date

   Working revision:	1.1	Fri Mar 17 22:48:45 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/msvc/namd2.dsw,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday March 24, 19100 @ 16:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory lima.ks.uiuc.edu:/tmp/jim/namd2/arch

Added Files:
	HPUX-KCC.arch 
Log Message:
KCC compiler on HP-UX.


===================================================================
File: HPUX-KCC.arch    	Status: Up-to-date

   Working revision:	1.1	Thu Mar 23 18:00:16 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX-KCC.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Saturday March 25, 19100 @ 23:27
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory asuncion.ks.uiuc.edu:/Home/p1/brunner/tmp/namd2/src

Modified Files:
	LdbCoordinator.C 
Log Message:
Fixed a load balancing bug.  Processors with no patches or computes
initially were not being load balanced properly.



===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.45	Sun Mar 26 05:26:02 2000
   Repository revision:	1.45	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Tuesday March 28, 19100 @ 17:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeTcl.C ScriptTcl.C ScriptTcl.h 
Log Message:
tclForces now uses main interp.


===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.20	Tue Mar 28 22:51:51 2000
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-1              	(revision: 1.17)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.15)
	release-2-1-beta-2       	(revision: 1.14)
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.19	Tue Mar 28 22:46:42 2000
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.13	Tue Mar 28 21:06:59 2000
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Wednesday March 29, 19100 @ 17:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	BackEnd.C 
Log Message:
Added new_handler.


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.9	Wed Mar 29 23:26:17 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday March 30, 19100 @ 16:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	HomePatch.C HomePatch.h Sequencer.C Sequencer.h 
Log Message:
Added code for constant extrapolation.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1074	Thu Mar 30 21:27:46 2000
   Repository revision:	1.1074	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1030	Thu Mar 30 21:24:02 2000
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1090	Thu Mar 30 21:20:28 2000
   Repository revision:	1.1090	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1032	Thu Mar 30 21:19:20 2000
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 31, 19100 @ 14:55
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Sequencer.C SimParameters.C 
Log Message:
Added constant extrapolation MTS scheme.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1091	Fri Mar 31 20:01:33 2000
   Repository revision:	1.1091	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1102	Fri Mar 31 20:00:34 2000
   Repository revision:	1.1102	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 3, 19100 @ 18:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	UniqueSetRaw.h 
Log Message:
Eliminated const array in favor of cascaded conditionals.


===================================================================
File: UniqueSetRaw.h   	Status: Up-to-date

   Working revision:	1.7	Mon Apr  3 23:21:50 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/UniqueSetRaw.h,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Monday April 3, 19100 @ 18:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeHomeTuples.h ComputeNonbondedBase.h 
	ComputeNonbondedUtil.C ComputeNonbondedUtil.h Sequencer.C 
	SimParameters.C SimParameters.h 
Log Message:
Added commOnly feature to eliminate force eval and integration.


===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1028	Mon Apr  3 23:20:29 2000
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1054	Mon Apr  3 23:08:22 2000
   Repository revision:	1.1054	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1032	Mon Apr  3 23:06:36 2000
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1026	Mon Apr  3 23:06:53 2000
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1092	Mon Apr  3 23:29:20 2000
   Repository revision:	1.1092	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1103	Mon Apr  3 23:02:43 2000
   Repository revision:	1.1103	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1054	Mon Apr  3 23:00:51 2000
   Repository revision:	1.1054	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 4, 19100 @ 12:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Can set commOnly in middle of run.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1104	Tue Apr  4 17:22:34 2000
   Repository revision:	1.1104	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 6, 19100 @ 16:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Broadcasts.h Controller.C Controller.h ReductionMgr.h 
	ScriptTcl.C ScriptTcl.h Sequencer.C Sequencer.h 
Log Message:
Conjugate gradient minimizer.


===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.13	Wed Apr  5 19:19:02 2000
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1117	Thu Apr  6 21:31:30 2000
   Repository revision:	1.1117	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1035	Wed Apr  5 21:15:14 2000
   Repository revision:	1.1035	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1023	Wed Apr  5 19:23:52 2000
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.20	Wed Apr  5 18:38:43 2000
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.14	Wed Apr  5 16:54:42 2000
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1093	Thu Apr  6 20:12:18 2000
   Repository revision:	1.1093	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1033	Wed Apr  5 20:35:12 2000
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday April 7, 19100 @ 9:29
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Projects/brunner/NAMD/namd2/src

Modified Files:
	NamdCentLB.C 
Log Message:
Added a weight factor for background load in load balancing


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.4	Fri Apr  7 14:28:30 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday April 7, 19100 @ 11:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Controller.C 
Log Message:
Added superlinear line search to CG minimizer.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1118	Fri Apr  7 15:56:05 2000
   Repository revision:	1.1118	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday April 8, 19100 @ 16:26
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv22502

Modified Files:
	Sync.C Sync.ci 
Log Message:
fix a bug in Sync.C


===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.3	Sat Apr  8 21:26:56 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Sync.ci          	Status: Up-to-date

   Working revision:	1.2	Sat Apr  8 21:26:56 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Sync.ci,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday April 9, 19100 @ 0:45
Author:	justin

Update of /Projects/namd2/cvsroot/namd2/src
In directory titan:/tmp_mnt/Projects/r5/bioinfo/justin/namd2/namd2/src

Modified Files:
	IMDOutput.C 
Log Message:
Fixed a bug with not checking if sock=0 before trying to call select on it.


===================================================================
File: IMDOutput.C      	Status: Up-to-date

   Working revision:	1.9	Sun Apr  9 05:26:53 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/IMDOutput.C,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Monday April 10, 19100 @ 15:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Controller.C Sequencer.C 
Log Message:
Small speed/stability tweaks to CG minimizer.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1119	Mon Apr 10 20:06:22 2000
   Repository revision:	1.1119	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1094	Fri Apr  7 21:52:24 2000
   Repository revision:	1.1094	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 10, 19100 @ 18:57
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv17814

Modified Files:
	Sync.C 
Log Message:
in Sync, remove a bug when no homepatch on a node


===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.4	Mon Apr 10 23:57:56 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday April 10, 19100 @ 19:01
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv18045

Modified Files:
	HomePatch.C 
Log Message:
made Sync call in HomePatch.C simple


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1075	Tue Apr 11 00:01:37 2000
   Repository revision:	1.1075	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 10, 19100 @ 19:33
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv19499

Modified Files:
	Node.C Sync.C Sync.h 
Log Message:
when no HomePatch in node, disable Sync. changes in Node.C andSync.[hC]


===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1055	Tue Apr 11 00:33:41 2000
   Repository revision:	1.1055	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.5	Tue Apr 11 00:33:41 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Sync.h           	Status: Up-to-date

   Working revision:	1.2	Tue Apr 11 00:33:41 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Sync.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday April 11, 19100 @ 9:54
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeAngles.C ComputeAngles.h ComputeAngles.inl 
	ComputeBonds.C ComputeBonds.h ComputeBonds.inl 
	ComputeDihedrals.C ComputeDihedrals.h ComputeDihedrals.inl 
	ComputeHomeTuples.h ComputeImpropers.C ComputeImpropers.h 
	ComputeNonbondedExcl.h Molecule.C Parameters.h 
Log Message:
Cleaned up tuple classes.


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1019	Tue Apr 11 01:58:17 2000
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1014	Tue Apr 11 01:55:39 2000
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.inl	Status: Up-to-date

   Working revision:	1.1006	Tue Apr 11 01:27:20 2000
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.inl,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1016	Tue Apr 11 02:01:00 2000
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1014)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1012	Tue Apr 11 01:59:18 2000
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.inl 	Status: Up-to-date

   Working revision:	1.1003	Tue Apr 11 01:14:10 2000
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.inl,v

   Existing Tags:
	release-2-1              	(revision: 1.1002)
	release-2-1-beta-4       	(revision: 1.1002)
	release-2-1-beta-3       	(revision: 1.1002)
	release-2-1-beta-2       	(revision: 1.1002)
	release-2-1-beta-1       	(revision: 1.1000)
	release-2-0-pre-charm-syntax	(revision: 1.1000)
	release-2-0              	(revision: 1.1000)
	release-2-0-beta-3       	(revision: 1.1000)
	release-2-0-beta-2       	(revision: 1.1000)
	release-alpha-1          	(revision: 1.1000)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1020	Tue Apr 11 02:03:02 2000
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1016)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1011	Tue Apr 11 01:59:27 2000
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.inl	Status: Up-to-date

   Working revision:	1.1004	Tue Apr 11 01:33:14 2000
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.inl,v

   Existing Tags:
	release-2-1              	(revision: 1.1003)
	release-2-1-beta-4       	(revision: 1.1003)
	release-2-1-beta-3       	(revision: 1.1003)
	release-2-1-beta-2       	(revision: 1.1003)
	release-2-1-beta-1       	(revision: 1.1001)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1029	Tue Apr 11 02:07:54 2000
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1019	Tue Apr 11 02:02:51 2000
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1011	Tue Apr 11 01:59:36 2000
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedExcl.h	Status: Up-to-date

   Working revision:	1.1009	Tue Apr 11 02:05:29 2000
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedExcl.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1008)
	release-2-1-beta-4       	(revision: 1.1008)
	release-2-1-beta-3       	(revision: 1.1008)
	release-2-1-beta-2       	(revision: 1.1008)
	release-2-1-beta-1       	(revision: 1.1006)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1043	Tue Apr 11 14:49:58 2000
   Repository revision:	1.1043	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.1009	Tue Apr 11 01:57:39 2000
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/Parameters.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 11, 19100 @ 10:12
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Home/p1/brunner/tmp/namd2/src

Modified Files:
	Rebalancer.C RefineOnly.C 
Log Message:
Some load balancer tweaks added


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.26	Tue Apr 11 15:12:16 2000
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: RefineOnly.C     	Status: Up-to-date

   Working revision:	1.8	Mon Apr 10 15:50:41 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/RefineOnly.C,v

   Existing Tags:
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)


****************************************
Date:	Tuesday April 11, 19100 @ 13:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
Small addForceToMomentum() optimization.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1076	Tue Apr 11 18:44:46 2000
   Repository revision:	1.1076	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 11, 19100 @ 13:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Lattice.h 
Log Message:
#defined out rint() macro.


===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1016	Tue Apr 11 16:30:31 2000
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 11, 19100 @ 14:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeAngles.C ComputeDihedrals.C 
Log Message:
Reorganization for optimizations.


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1020	Tue Apr 11 19:18:53 2000
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1021	Tue Apr 11 15:14:56 2000
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1016)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 11, 19100 @ 16:12
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv15474

Modified Files:
	NamdCentLB.h NamdCentLB.C 
Log Message:
dump buildData three arrays to files "data" for debugging


===================================================================
File: NamdCentLB.h     	Status: Up-to-date

   Working revision:	1.2	Tue Apr 11 21:12:54 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.5	Tue Apr 11 21:12:55 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday April 11, 19100 @ 16:41
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv16741

Modified Files:
	NamdCentLB.C 
Log Message:
remove debug printout in NamdCentLB.C


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.6	Tue Apr 11 21:41:46 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday April 11, 19100 @ 16:49
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv17108

Modified Files:
	NamdCentLB.C 
Log Message:
NamdCentralLB.C


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.7	Tue Apr 11 21:49:52 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday April 11, 19100 @ 17:27
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv19157

Modified Files:
	NamdCentLB.C 
Log Message:
remove dumpDat


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.8	Tue Apr 11 22:27:35 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday April 11, 19100 @ 18:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Lattice.h 
Log Message:
Just declared rint instead of using fp.h on T3E.


===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1017	Tue Apr 11 23:16:49 2000
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 11, 19100 @ 21:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Lattice.h 
Log Message:
rint() on T3E again


===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1018	Wed Apr 12 02:11:11 2000
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 11, 19100 @ 23:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeNonbondedBase.h Controller.C Molecule.C Molecule.h 
	WorkDistrib.C 
Log Message:
Eliminated ComputeNonbondedExcl with faster exclusion tests.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1055	Wed Apr 12 03:46:12 2000
   Repository revision:	1.1055	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1120	Wed Apr 12 03:55:39 2000
   Repository revision:	1.1120	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1044	Wed Apr 12 04:46:25 2000
   Repository revision:	1.1044	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1031	Wed Apr 12 03:48:16 2000
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1082	Wed Apr 12 03:49:29 2000
   Repository revision:	1.1082	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 11, 19100 @ 23:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Controller.C Sequencer.C 
Log Message:
Eliminated unused altVirial calculation.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1121	Wed Apr 12 04:52:08 2000
   Repository revision:	1.1121	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1095	Wed Apr 12 04:53:21 2000
   Repository revision:	1.1095	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 12, 19100 @ 14:33
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Projects/brunner/NAMD/namd2/src

Modified Files:
	WorkDistrib.C WorkDistrib.ci WorkDistrib.h 
Log Message:
Broke up enqueueWorks by type, for clearer load statistics


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1083	Wed Apr 12 19:23:20 2000
   Repository revision:	1.1083	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1013	Tue Apr 11 20:36:39 2000
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1020	Tue Apr 11 20:36:07 2000
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 12, 19100 @ 14:34
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Projects/brunner/NAMD/namd2/src

Modified Files:
	RefineOnly.C Sync.C 
Log Message:
Turn sync off by default


===================================================================
File: RefineOnly.C     	Status: Up-to-date

   Working revision:	1.9	Tue Apr 11 20:23:43 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/RefineOnly.C,v

   Existing Tags:
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)

===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.6	Tue Apr 11 22:16:16 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday April 12, 19100 @ 17:49
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv25678

Modified Files:
	Compute.C Patch.C ProxyMgr.h Sync.C Sync.h 
Log Message:
New Sync


===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1026	Wed Apr 12 22:49:30 2000
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1036	Wed Apr 12 22:49:30 2000
   Repository revision:	1.1036	/Projects/namd2/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1029)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1025)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1017	Wed Apr 12 22:49:30 2000
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.7	Wed Apr 12 22:49:30 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Sync.h           	Status: Up-to-date

   Working revision:	1.3	Wed Apr 12 22:49:30 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/Sync.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday April 12, 19100 @ 18:40
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv28084

Modified Files:
	Sync.C 
Log Message:
remove debug


===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.8	Wed Apr 12 23:40:13 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday April 12, 19100 @ 18:59
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv28984

Modified Files:
	Sync.C 
Log Message:
Sync.C


===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.9	Wed Apr 12 23:59:41 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday April 12, 19100 @ 20:39
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv3598

Modified Files:
	Sync.C 
Log Message:
Sync.C some optimization


===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.10	Thu Apr 13 01:39:16 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday April 12, 19100 @ 21:05
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv4852

Modified Files:
	Sync.C 
Log Message:
turn off Sync by default


===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.11	Thu Apr 13 02:05:47 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday April 13, 19100 @ 12:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ReductionMgr.h 
Log Message:
Eliminated unused altVirial data.


===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1024	Thu Apr 13 17:02:51 2000
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 13, 19100 @ 13:42
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Eliminated unused altVirial.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1096	Thu Apr 13 18:42:03 2000
   Repository revision:	1.1096	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 13, 19100 @ 17:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeNonbondedUtil.C 
Log Message:
Eliminated endif;


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1033	Thu Apr 13 22:07:21 2000
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 13, 19100 @ 21:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeAngles.h ComputeBonds.h ComputeDihedrals.h 
	ComputeHomeTuples.h ComputeImpropers.h ComputeMap.h 
	ComputeMgr.C LdbCoordinator.C Molecule.C WorkDistrib.C 
Added Files:
	ComputeSelfTuples.h 
Log Message:
Split B/A/D/I into within and between patch parts.


===================================================================
File: ComputeSelfTuples.h	Status: Up-to-date

   Working revision:	1.1	Fri Apr 14 02:32:53 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeSelfTuples.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1015	Thu Apr 13 19:46:59 2000
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1013	Thu Apr 13 19:48:17 2000
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1012	Thu Apr 13 19:48:29 2000
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1030	Fri Apr 14 02:23:07 2000
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1012	Thu Apr 13 19:48:44 2000
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1021	Thu Apr 13 19:50:19 2000
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1033	Thu Apr 13 19:52:22 2000
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.46	Thu Apr 13 20:05:17 2000
   Repository revision:	1.46	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1045	Fri Apr 14 02:38:33 2000
   Repository revision:	1.1045	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1084	Thu Apr 13 20:00:11 2000
   Repository revision:	1.1084	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 17, 19100 @ 14:45
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv25464

Added Files:
	Linux-i686-MPI.arch 
Log Message:
add Linux-i686-MPI.arch for mpi-linux


===================================================================
File: Linux-i686-MPI.arch	Status: Up-to-date

   Working revision:	1.1	Mon Apr 17 19:45:43 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-MPI.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday April 18, 19100 @ 14:34
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv26636

Modified Files:
	ComputeSelfTuples.h 
Log Message:
linux compiler complain a multi-inheritance ambiguity in ComputeSelfTuples.h


===================================================================
File: ComputeSelfTuples.h	Status: Up-to-date

   Working revision:	1.2	Tue Apr 18 19:34:07 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeSelfTuples.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday April 24, 19100 @ 15:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Make.depends 
Log Message:
Remade dependencies.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.65	Mon Apr 24 20:42:33 2000
   Repository revision:	1.65	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Monday April 24, 19100 @ 16:36
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Projects/brunner/NAMD/namd2/src

Modified Files:
	Rebalancer.C Rebalancer.h 
Log Message:
Made some changes to the refinement procedure


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.27	Mon Apr 24 21:35:27 2000
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: Rebalancer.h     	Status: Up-to-date

   Working revision:	1.6	Fri Apr 14 19:16:14 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/Rebalancer.h,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)


****************************************
Date:	Tuesday April 25, 19100 @ 15:21
Author:	gzheng

Update of /Projects/namd2/cvsroot/fftw/ampi
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv9586/ampi

Log Message:
Directory /Projects/namd2/cvsroot/fftw/ampi added to the repository


[input file was '-']

****************************************
Date:	Tuesday April 25, 19100 @ 15:22
Author:	gzheng

Update of /Projects/namd2/cvsroot/fftw/ampi
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv9613

Added Files:
	Makefile Makefile.am Makefile.in TOMS_transpose.c 
	TOMS_transpose.h fftw_mpi.c fftw_mpi.h fftw_mpi_test.c 
	fftwnd_mpi.c rfftw_mpi.h rfftw_mpi_test.c rfftwnd_mpi.c 
	sched.c sched.h test_sched.c test_transpose_mpi.c 
	transpose_mpi.c 
Log Message:
add for ampi


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:19 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile.am      	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:19 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/Makefile.am,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile.in      	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:19 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/Makefile.in,v

   Existing Tags:
	No Tags Exist

===================================================================
File: TOMS_transpose.c 	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:19 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/TOMS_transpose.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: TOMS_transpose.h 	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:19 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/TOMS_transpose.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftw_mpi.c       	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:19 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/fftw_mpi.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftw_mpi.h       	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:19 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/fftw_mpi.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftw_mpi_test.c  	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:19 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/fftw_mpi_test.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftwnd_mpi.c     	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:19 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/fftwnd_mpi.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: rfftw_mpi.h      	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:20 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/rfftw_mpi.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: rfftw_mpi_test.c 	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:20 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/rfftw_mpi_test.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: rfftwnd_mpi.c    	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:20 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/rfftwnd_mpi.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: sched.c          	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:20 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/sched.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: sched.h          	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:20 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/sched.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: test_sched.c     	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:20 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/test_sched.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: test_transpose_mpi.c	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:20 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/test_transpose_mpi.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: transpose_mpi.c  	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:22:20 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/transpose_mpi.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday April 25, 19100 @ 15:33
Author:	gzheng

Update of /Projects/namd2/cvsroot/fftw/ampi/namd2
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv9659/namd2

Log Message:
Directory /Projects/namd2/cvsroot/fftw/ampi/namd2 added to the repository


[input file was '-']

****************************************
Date:	Tuesday April 25, 19100 @ 15:34
Author:	gzheng

Update of /Projects/namd2/cvsroot/fftw/ampi
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv9686

Modified Files:
	Makefile fftw_mpi_test.c rfftw_mpi_test.c 
Log Message:
added sample small program for namd2


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.2	Tue Apr 25 20:34:37 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/ampi/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftw_mpi_test.c  	Status: Up-to-date

   Working revision:	1.2	Tue Apr 25 20:34:38 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/ampi/fftw_mpi_test.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: rfftw_mpi_test.c 	Status: Up-to-date

   Working revision:	1.2	Tue Apr 25 20:34:38 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/fftw/ampi/rfftw_mpi_test.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday April 25, 19100 @ 15:34
Author:	gzheng

Update of /Projects/namd2/cvsroot/fftw/ampi/namd2
In directory hamlet:/tmp_mnt/Home/l2/gzheng/tmp/cvs-serv9686/namd2

Added Files:
	Makefile main.C main.ci 
Log Message:
added sample small program for namd2


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:34:38 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/namd2/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:34:38 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/namd2/main.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.1	Tue Apr 25 20:34:38 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/fftw/ampi/namd2/main.ci,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday April 27, 19100 @ 11:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/fftw
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/fftw

Log Message:
Directory /Projects/namd2/cvsroot/namd2/fftw added to the repository


[input file was '-']

****************************************
Date:	Thursday April 27, 19100 @ 11:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile config 
Log Message:
Incorporated AMPI version of FFTW.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1114	Thu Apr 27 16:23:25 2000
   Repository revision:	1.1114	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.15	Thu Apr 27 15:16:57 2000
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Thursday April 27, 19100 @ 11:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	AIX-RS6000.fftw HPUX.fftw IBM-SP.fftw Linux-i686.fftw 
	Origin2000.fftw Solaris-Sparc.fftw T3E.fftw Tru64-Alpha.fftw 
Log Message:
Incorporated AMPI version of FFTW.


===================================================================
File: AIX-RS6000.fftw  	Status: Up-to-date

   Working revision:	1.2	Thu Apr 27 15:40:05 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX.fftw        	Status: Up-to-date

   Working revision:	1.2	Thu Apr 27 15:40:10 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/HPUX.fftw,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: IBM-SP.fftw      	Status: Up-to-date

   Working revision:	1.2	Thu Apr 27 15:40:15 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686.fftw  	Status: Up-to-date

   Working revision:	1.2	Thu Apr 27 15:40:20 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.fftw,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Origin2000.fftw  	Status: Up-to-date

   Working revision:	1.4	Thu Apr 27 15:40:28 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Origin2000.fftw,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Solaris-Sparc.fftw	Status: Up-to-date

   Working revision:	1.2	Thu Apr 27 15:40:34 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc.fftw,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: T3E.fftw         	Status: Up-to-date

   Working revision:	1.2	Thu Apr 27 15:40:38 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/T3E.fftw,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Tru64-Alpha.fftw 	Status: Up-to-date

   Working revision:	1.2	Thu Apr 27 15:40:44 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha.fftw,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Thursday April 27, 19100 @ 11:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/fftw
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/fftw

Added Files:
	COPYING Makefile fftw_mpi.c fftw_mpi.h fftwnd_mpi.c 
	rfftw_mpi.h rfftwnd_mpi.c sched.c sched.h transpose_mpi.c 
Log Message:
Incorporated AMPI version of FFTW.


===================================================================
File: COPYING          	Status: Up-to-date

   Working revision:	1.1	Thu Apr 27 16:21:26 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/fftw/COPYING,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1	Thu Apr 27 15:29:25 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/fftw/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftw_mpi.c       	Status: Up-to-date

   Working revision:	1.1	Thu Apr 27 16:17:34 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/fftw/fftw_mpi.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftw_mpi.h       	Status: Up-to-date

   Working revision:	1.1	Thu Apr 27 16:17:45 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/fftw/fftw_mpi.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftwnd_mpi.c     	Status: Up-to-date

   Working revision:	1.1	Thu Apr 27 16:17:56 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/fftw/fftwnd_mpi.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: rfftw_mpi.h      	Status: Up-to-date

   Working revision:	1.1	Thu Apr 27 16:18:08 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/fftw/rfftw_mpi.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: rfftwnd_mpi.c    	Status: Up-to-date

   Working revision:	1.1	Thu Apr 27 16:18:20 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/fftw/rfftwnd_mpi.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: sched.c          	Status: Up-to-date

   Working revision:	1.1	Thu Apr 27 16:18:34 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/fftw/sched.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: sched.h          	Status: Up-to-date

   Working revision:	1.1	Thu Apr 27 16:18:48 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/fftw/sched.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: transpose_mpi.c  	Status: Up-to-date

   Working revision:	1.1	Thu Apr 27 16:19:04 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/fftw/transpose_mpi.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday April 28, 19100 @ 16:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ReductionMgr.C 
Log Message:
Change to varsize message to fix alignment problem.  Last element
is now array of length 1.  Hopefully always last in memory but
have to watch because this is a class, not a struct.


===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1038	Fri Apr 28 21:19:20 2000
   Repository revision:	1.1038	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1037)
	release-2-1-beta-4       	(revision: 1.1037)
	release-2-1-beta-3       	(revision: 1.1037)
	release-2-1-beta-2       	(revision: 1.1037)
	release-2-1-beta-1       	(revision: 1.1035)
	release-2-0-pre-charm-syntax	(revision: 1.1031)
	release-2-0              	(revision: 1.1030)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1026)
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday April 30, 19100 @ 14:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory ganymede.ks.uiuc.edu:/tmp_mnt/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	HPUX-aCC.arch 
Log Message:
Aggressive optimization.


===================================================================
File: HPUX-aCC.arch    	Status: Up-to-date

   Working revision:	1.2	Sat Apr 29 18:50:16 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/HPUX-aCC.arch,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Monday May 1, 19100 @ 17:29
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Added Files:
	HPUX-PA2.0-aCC.arch HPUX-PA2.0.base 
Log Message:
Added HPUX-PA2.0 specialized build.


===================================================================
File: HPUX-PA2.0-aCC.arch	Status: Up-to-date

   Working revision:	1.1	Sun Apr 30 19:52:45 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX-PA2.0-aCC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX-PA2.0.base  	Status: Up-to-date

   Working revision:	1.1	Sun Apr 30 19:54:31 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX-PA2.0.base,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday May 1, 19100 @ 17:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Added Files:
	HPUX-PA2.0.fftw HPUX-PA2.0.tcl 
Log Message:
Extra files for HPUX-PA2.0.


===================================================================
File: HPUX-PA2.0.fftw  	Status: Up-to-date

   Working revision:	1.1	Mon May  1 22:39:41 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX-PA2.0.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX-PA2.0.tcl   	Status: Up-to-date

   Working revision:	1.1	Mon May  1 22:39:47 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX-PA2.0.tcl,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 5, 19100 @ 13:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/ntport/namd2/src

Modified Files:
	Lattice.h NamdCentLB.C 
Log Message:
Keeping it compiling on Win32.


===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1019	Thu May  4 22:03:47 2000
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.9	Fri May  5 16:20:44 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 5, 19100 @ 13:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/msvc
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/ntport/namd2/msvc

Modified Files:
	namd2.dsp 
Log Message:
Compiles on Win32 again.


===================================================================
File: namd2.dsp        	Status: Up-to-date

   Working revision:	1.2	Fri May  5 16:26:35 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/msvc/namd2.dsp,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday May 23, 19100 @ 15:45
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory urbana.ks.uiuc.edu:/Projects/r5/bioinfo/justin/namd2/namd2/src

Modified Files:
	Controller.C SimParameters.C SimParameters.h 
Log Message:
Added surface tension control.  Currently implemented only for Langevin
piston, and assumes that the third lattice vector is parallel to the
z axis.  Still untested.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1122	Tue May 23 14:59:11 2000
   Repository revision:	1.1122	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1105	Tue May 23 13:36:53 2000
   Repository revision:	1.1105	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1055	Mon May 22 21:01:43 2000
   Repository revision:	1.1055	/home/cvs/namd/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday May 24, 19100 @ 11:12
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Fixed bug from uninitialized accumulator Vectors.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1097	Wed May 24 16:11:40 2000
   Repository revision:	1.1097	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 25, 19100 @ 13:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hamlet:/tmp/cvs-serv18041

Modified Files:
	T3E.fftw 
Log Message:
Fixed for SDSC T3E.


===================================================================
File: T3E.fftw         	Status: Up-to-date

   Working revision:	1.3	Thu May 25 18:52:02 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/T3E.fftw,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Wednesday May 31, 19100 @ 17:31
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	ProxyPatch.C 
Log Message:
Fixed bug when creating new proxies.


===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1026	Wed May 31 22:30:02 2000
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1023)
	release-2-1-beta-4       	(revision: 1.1023)
	release-2-1-beta-3       	(revision: 1.1023)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday May 31, 19100 @ 18:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	ProxyPatch.C 
Log Message:
Fixed for real this time.


===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1027	Wed May 31 23:00:35 2000
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1023)
	release-2-1-beta-4       	(revision: 1.1023)
	release-2-1-beta-3       	(revision: 1.1023)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday June 5, 19100 @ 10:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	NamdTypes.h 
Log Message:
char -> signed char


===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1018	Mon Jun  5 15:09:42 2000
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1012)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday June 28, 19100 @ 23:54
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Parallel PME reciprocal sum.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.66	Thu Jun 29 04:22:32 2000
   Repository revision:	1.66	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1115	Tue Jun 27 22:05:49 2000
   Repository revision:	1.1115	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday June 28, 19100 @ 23:55
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	ComputePme.C ComputePme.h ComputePmeMsgs.C ComputePmeMsgs.h 
	NamdCentLB.C Node.h PmeBase.h PmeCoulomb.C PmeKSpace.C 
	PmeKSpace.h WorkDistrib.C WorkDistrib.h main.ci 
Added Files:
	ComputePmeMgr.ci 
Log Message:
Parallel PME reciprocal sum.


===================================================================
File: ComputePmeMgr.ci 	Status: Up-to-date

   Working revision:	1.1	Tue Jun 27 21:45:24 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputePmeMgr.ci,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.12	Thu Jun 29 04:47:26 2000
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.5	Thu Jun 29 03:02:40 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputePmeMsgs.C 	Status: Up-to-date

   Working revision:	1.6	Thu Jun 29 04:33:13 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputePmeMsgs.C,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputePmeMsgs.h 	Status: Up-to-date

   Working revision:	1.5	Thu Jun 29 04:33:02 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputePmeMsgs.h,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.10	Wed Jun 28 18:58:47 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1027	Wed Jun 28 20:23:26 2000
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PmeBase.h        	Status: Up-to-date

   Working revision:	1.5	Wed Jun 28 20:02:20 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/PmeBase.h,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeCoulomb.C     	Status: Up-to-date

   Working revision:	1.5	Thu Jun 29 00:59:10 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/PmeCoulomb.C,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: PmeKSpace.C      	Status: Up-to-date

   Working revision:	1.5	Thu Jun 29 01:14:08 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/PmeKSpace.C,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeKSpace.h      	Status: Up-to-date

   Working revision:	1.4	Thu Jun 29 01:13:39 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/PmeKSpace.h,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1085	Wed Jun 28 16:46:28 2000
   Repository revision:	1.1085	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1021	Wed Jun 28 16:38:23 2000
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.1010	Tue Jun 27 22:19:40 2000
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/main.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday July 3, 19100 @ 14:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Updated for new Charm version.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.13	Mon Jul  3 18:49:31 2000
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Wednesday July 12, 19100 @ 10:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	ProxyMgr.C 
Log Message:
Eliminates zero forces from result messages.


===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1031	Wed Jul 12 15:38:36 2000
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1023)
	release-2-0              	(revision: 1.1023)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1023)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 12, 19100 @ 17:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	LdbCoordinator.C LdbCoordinator.h NamdCentLB.C 
Log Message:
Turned off timer calls except right before load balancing.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.47	Wed Jul 12 21:47:20 2000
   Repository revision:	1.47	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.31	Wed Jul 12 19:33:16 2000
   Repository revision:	1.31	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-2-1              	(revision: 1.26)
	release-2-1-beta-4       	(revision: 1.26)
	release-2-1-beta-3       	(revision: 1.26)
	release-2-1-beta-2       	(revision: 1.26)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.23)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.11	Wed Jul 12 21:12:48 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday July 13, 19100 @ 11:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2

Modified Files:
	notes.txt 
Log Message:
Added notes on ssh.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.12	Thu Jul 13 16:45:10 2000
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Thursday July 13, 19100 @ 19:42
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Hydrogen.h Molecule.C 
Log Message:
Eliminated order N-squared behavior at startup.


===================================================================
File: Hydrogen.h       	Status: Up-to-date

   Working revision:	1.11	Fri Jul 14 00:14:42 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/Hydrogen.h,v

   Existing Tags:
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.6)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1046	Fri Jul 14 00:39:19 2000
   Repository revision:	1.1046	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 13, 19100 @ 19:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Hydrogen.h Molecule.C 
Log Message:
Fixed include files.


===================================================================
File: Hydrogen.h       	Status: Up-to-date

   Working revision:	1.12	Fri Jul 14 00:45:22 2000
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/Hydrogen.h,v

   Existing Tags:
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.6)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1047	Fri Jul 14 00:45:08 2000
   Repository revision:	1.1047	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 13, 19100 @ 20:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Parameters.C 
Log Message:
Improved assignment of dihedral parameters, but still a linear search.


===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1020	Fri Jul 14 01:15:50 2000
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday July 14, 19100 @ 15:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	ComputeAngles.h ComputeBonds.h ComputeDihedrals.h 
	ComputeHomeTuples.h ComputeImpropers.h ComputeMgr.C 
	ComputeSelfTuples.h PatchMap.C PatchMap.h 
Log Message:
ComputeHomeTuples now passed base patch ID list in ComputeMgr.C.
Currently base patches are home patches, but this can be changed.


===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1016	Fri Jul 14 19:10:59 2000
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1014	Fri Jul 14 19:10:51 2000
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1013	Fri Jul 14 19:11:05 2000
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1031	Fri Jul 14 20:20:15 2000
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1013	Fri Jul 14 19:53:16 2000
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1034	Fri Jul 14 19:21:37 2000
   Repository revision:	1.1034	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeSelfTuples.h	Status: Up-to-date

   Working revision:	1.3	Fri Jul 14 20:04:06 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeSelfTuples.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1026	Fri Jul 14 19:18:14 2000
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1017	Fri Jul 14 19:12:43 2000
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1016)
	release-2-1-beta-1       	(revision: 1.1014)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday July 14, 19100 @ 16:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2

Modified Files:
	Make.depends 
Log Message:
Updated.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.67	Fri Jul 14 21:55:00 2000
   Repository revision:	1.67	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Saturday July 15, 19100 @ 13:30
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/arch
In directory bastogne.ks.uiuc.edu:/Home/p1/brunner/tmp/namd2/arch

Added Files:
	ASCI-Red.fftw 
Log Message:
FFTW file for account rbrunne on the ASCI Red


===================================================================
File: ASCI-Red.fftw    	Status: Up-to-date

   Working revision:	1.1	Sat Jul 15 18:23:15 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/ASCI-Red.fftw,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Saturday July 15, 19100 @ 21:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory io.ks.uiuc.edu:/tmp/namd2/src

Modified Files:
	ResizeArray.h 
Log Message:
ResizeArray constructors no longer us references since only a pointer.


===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.11	Sun Jul 16 02:55:09 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ResizeArray.h,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Saturday July 15, 19100 @ 22:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	ComputeMgr.C PatchMap.C PatchMap.h 
Log Message:
Fixed compile problem with passing temporaries on some platforms.


===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1035	Sun Jul 16 03:27:09 2000
   Repository revision:	1.1035	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1027	Sun Jul 16 03:22:05 2000
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1018	Sun Jul 16 03:28:36 2000
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1016)
	release-2-1-beta-1       	(revision: 1.1014)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 18, 19100 @ 10:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory cancun:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	HomePatch.C ProxyMgr.C ProxyMgr.ci ProxyMgr.h 
Log Message:
Uses multicasts to send positions.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1077	Mon Jul 17 15:06:24 2000
   Repository revision:	1.1077	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1032	Mon Jul 17 15:04:30 2000
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1023)
	release-2-0              	(revision: 1.1023)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1023)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.ci      	Status: Up-to-date

   Working revision:	1.1006	Mon Jul 17 15:02:12 2000
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1018	Mon Jul 17 15:01:29 2000
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 19, 19100 @ 11:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Switched atoi to sscanf to avoid optimization bug.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1048	Wed Jul 19 16:30:47 2000
   Repository revision:	1.1048	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 19, 19100 @ 15:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	HomePatch.C WorkDistrib.C 
Log Message:
Reduced numbers of proxies (fixed OLD bug).


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1078	Wed Jul 19 19:52:26 2000
   Repository revision:	1.1078	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1086	Wed Jul 19 19:56:36 2000
   Repository revision:	1.1086	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 19, 19100 @ 17:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2

Modified Files:
	Makefile 
Log Message:
Builds without FFTW again.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1116	Wed Jul 19 21:34:38 2000
   Repository revision:	1.1116	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 19, 19100 @ 17:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/arch

Modified Files:
	AIX-RS6000.fftw ASCI-Red.fftw HPUX-PA2.0.fftw HPUX.fftw 
	IBM-SP.fftw Linux-i686.fftw Origin2000.fftw Solaris-Sparc.fftw 
	T3E.fftw Tru64-Alpha.fftw 
Log Message:
Builds without FFTW again.


===================================================================
File: AIX-RS6000.fftw  	Status: Up-to-date

   Working revision:	1.3	Wed Jul 19 21:42:29 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ASCI-Red.fftw    	Status: Up-to-date

   Working revision:	1.2	Wed Jul 19 21:42:39 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/ASCI-Red.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX-PA2.0.fftw  	Status: Up-to-date

   Working revision:	1.2	Wed Jul 19 21:42:48 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/HPUX-PA2.0.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX.fftw        	Status: Up-to-date

   Working revision:	1.3	Wed Jul 19 21:42:57 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/HPUX.fftw,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: IBM-SP.fftw      	Status: Up-to-date

   Working revision:	1.3	Wed Jul 19 21:43:07 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686.fftw  	Status: Up-to-date

   Working revision:	1.3	Wed Jul 19 21:43:15 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.fftw,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Origin2000.fftw  	Status: Up-to-date

   Working revision:	1.5	Wed Jul 19 21:43:24 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Origin2000.fftw,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Solaris-Sparc.fftw	Status: Up-to-date

   Working revision:	1.3	Wed Jul 19 21:43:32 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc.fftw,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: T3E.fftw         	Status: Up-to-date

   Working revision:	1.4	Wed Jul 19 21:43:41 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/T3E.fftw,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Tru64-Alpha.fftw 	Status: Up-to-date

   Working revision:	1.3	Wed Jul 19 21:43:48 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha.fftw,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Wednesday July 19, 19100 @ 17:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/fftw
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/fftw

Modified Files:
	fftw_mpi.c fftwnd_mpi.c rfftwnd_mpi.c sched.c transpose_mpi.c 
Log Message:
Builds without FFTW again.


===================================================================
File: fftw_mpi.c       	Status: Up-to-date

   Working revision:	1.2	Wed Jul 19 21:24:45 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/fftw/fftw_mpi.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: fftwnd_mpi.c     	Status: Up-to-date

   Working revision:	1.2	Wed Jul 19 21:24:59 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/fftw/fftwnd_mpi.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: rfftwnd_mpi.c    	Status: Up-to-date

   Working revision:	1.2	Wed Jul 19 21:25:26 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/fftw/rfftwnd_mpi.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: sched.c          	Status: Up-to-date

   Working revision:	1.2	Wed Jul 19 21:25:38 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/fftw/sched.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: transpose_mpi.c  	Status: Up-to-date

   Working revision:	1.2	Wed Jul 19 21:25:52 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/fftw/transpose_mpi.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday July 19, 19100 @ 17:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Builds without FFTW again.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.14	Wed Jul 19 21:02:38 2000
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Wednesday July 19, 19100 @ 17:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2

Modified Files:
	Makefile 
Log Message:
Fixed race condition when using gmake.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1117	Wed Jul 19 22:40:39 2000
   Repository revision:	1.1117	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 20, 19100 @ 15:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
Nodes w/o patches get data first.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1079	Thu Jul 20 20:12:04 2000
   Repository revision:	1.1079	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 20, 19100 @ 18:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	ComputeMgr.C ComputeNonbondedBase.h ComputeNonbondedPair.C 
	ComputeNonbondedPair.h WorkDistrib.C 
Log Message:
ComputeNonbondedPair partitioned for smaller time slices.


===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1036	Thu Jul 20 22:51:24 2000
   Repository revision:	1.1036	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1056	Thu Jul 20 23:04:54 2000
   Repository revision:	1.1056	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1024	Thu Jul 20 22:54:59 2000
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1013	Thu Jul 20 22:52:23 2000
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1087	Thu Jul 20 23:46:41 2000
   Repository revision:	1.1087	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday July 23, 19100 @ 17:35
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Home/p1/brunner/tmp/namd2-07.20/src

Modified Files:
	AlgSeven.C NamdCentLB.C Rebalancer.C Rebalancer.h RefineOnly.C 
Log Message:
Changed the refinement search into a binary search, in both AlgSeven and
RefineOnly


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.21	Sun Jul 23 22:00:14 2000
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.12	Fri Jul 21 20:38:09 2000
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.28	Wed Jul 19 20:44:45 2000
   Repository revision:	1.28	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: Rebalancer.h     	Status: Up-to-date

   Working revision:	1.7	Wed Jul 19 20:44:56 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/Rebalancer.h,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: RefineOnly.C     	Status: Up-to-date

   Working revision:	1.10	Fri Jul 21 20:26:36 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/RefineOnly.C,v

   Existing Tags:
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)


****************************************
Date:	Sunday July 23, 19100 @ 17:36
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Home/p1/brunner/tmp/namd2-07.20/src

Modified Files:
	Sync.C 
Log Message:
Turned sync on by default



===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.12	Sun Jul 23 22:22:34 2000
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday July 23, 19100 @ 17:37
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Home/p1/brunner/tmp/namd2-07.20/src

Modified Files:
	Patch.C 
Log Message:
Added a compute proxy checker, to print a warning when a non-home patch
has no dependent patches.


===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1037	Sun Jul 23 22:14:27 2000
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1029)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1025)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 25, 19100 @ 9:29
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	NamdCentLB.C 
Log Message:
Added newline.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.13	Tue Jul 25 14:27:16 2000
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 25, 19100 @ 11:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory cancun:/tmp/namd2/src

Modified Files:
	HomePatch.C PatchTypes.h Sync.C 
Log Message:
Fixed Sync so that firstTimestep != 0 works by adding sequence to flags.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1080	Tue Jul 25 16:26:23 2000
   Repository revision:	1.1080	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.14	Tue Jul 25 16:28:06 2000
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.13)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.8)
	development-4            	(revision: 1.8)

===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.13	Tue Jul 25 16:27:30 2000
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 25, 19100 @ 11:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	ComputeMgr.C HomePatch.C Patch.h ProxyMgr.C ProxyMgr.ci 
	ProxyMgr.h ProxyPatch.C ProxyPatch.h 
Log Message:
Now removes unused proxies during compute migration (load balancing).


===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1037	Tue Jul 25 14:34:16 2000
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1081	Tue Jul 25 16:40:23 2000
   Repository revision:	1.1081	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1019	Mon Jul 24 21:57:23 2000
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1012)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1033	Tue Jul 25 15:05:13 2000
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1023)
	release-2-0              	(revision: 1.1023)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1023)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.ci      	Status: Up-to-date

   Working revision:	1.1007	Tue Jul 25 15:18:44 2000
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1019	Tue Jul 25 15:05:26 2000
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1028	Mon Jul 24 22:12:47 2000
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1023)
	release-2-1-beta-4       	(revision: 1.1023)
	release-2-1-beta-3       	(revision: 1.1023)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.h     	Status: Up-to-date

   Working revision:	1.1003	Mon Jul 24 22:06:35 2000
   Repository revision:	1.1003	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1002)
	release-2-1-beta-4       	(revision: 1.1002)
	release-2-1-beta-3       	(revision: 1.1002)
	release-2-1-beta-2       	(revision: 1.1002)
	release-2-1-beta-1       	(revision: 1.1000)
	release-2-0-pre-charm-syntax	(revision: 1.1000)
	release-2-0              	(revision: 1.1000)
	release-2-0-beta-3       	(revision: 1.1000)
	release-2-0-beta-2       	(revision: 1.1000)
	release-alpha-1          	(revision: 1.1000)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 25, 19100 @ 13:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	ProxyPatch.C 
Log Message:
Fixed rare bug w/ removing proxies.


===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1029	Tue Jul 25 18:30:42 2000
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1023)
	release-2-1-beta-4       	(revision: 1.1023)
	release-2-1-beta-3       	(revision: 1.1023)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 25, 19100 @ 15:46
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Home/p1/brunner/tmp/namd2-07.25/src

Modified Files:
	AlgSeven.C 
Log Message:
Fixed load balancer problem which occurs when the biggest piece of
work is larger than the average processor load.  Instead of giving
up immediately, now it allows some processors to be overloaded, and
continues.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.22	Tue Jul 25 20:40:54 2000
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)


****************************************
Date:	Wednesday July 26, 19100 @ 15:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Compute.C Compute.h ComputeHomePatch.C ComputeHomePatch.h 
	ComputeHomePatches.C ComputeHomeTuples.h ComputePatch.C 
	ComputePatch.h ComputePatchPair.C ComputePatchPair.h 
	ComputeSelfTuples.h Patch.C Sync.C WorkDistrib.C common.h 
Log Message:
Cleaned and updated priorities.


===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1027	Wed Jul 26 20:27:39 2000
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1015	Wed Jul 26 19:28:17 2000
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomePatch.C	Status: Up-to-date

   Working revision:	1.4	Wed Jul 26 20:19:37 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.1)

===================================================================
File: ComputeHomePatch.h	Status: Up-to-date

   Working revision:	1.3	Wed Jul 26 19:22:51 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatch.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)
	release-2-1-beta-3       	(revision: 1.1)
	release-2-1-beta-2       	(revision: 1.1)

===================================================================
File: ComputeHomePatches.C	Status: Up-to-date

   Working revision:	1.1011	Wed Jul 26 20:22:01 2000
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ComputeHomePatches.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1009)
	release-2-1-beta-4       	(revision: 1.1009)
	release-2-1-beta-3       	(revision: 1.1009)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1032	Wed Jul 26 20:22:20 2000
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.C   	Status: Up-to-date

   Working revision:	1.1021	Wed Jul 26 20:19:44 2000
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/ComputePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1014)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatch.h   	Status: Up-to-date

   Working revision:	1.1011	Wed Jul 26 19:23:01 2000
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ComputePatch.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1009)
	release-2-1-beta-4       	(revision: 1.1009)
	release-2-1-beta-3       	(revision: 1.1009)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.C	Status: Up-to-date

   Working revision:	1.1022	Wed Jul 26 20:19:59 2000
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/ComputePatchPair.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePatchPair.h	Status: Up-to-date

   Working revision:	1.1011	Wed Jul 26 19:23:08 2000
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ComputePatchPair.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1009)
	release-2-1-beta-4       	(revision: 1.1009)
	release-2-1-beta-3       	(revision: 1.1009)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeSelfTuples.h	Status: Up-to-date

   Working revision:	1.4	Wed Jul 26 20:20:11 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeSelfTuples.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1038	Wed Jul 26 19:30:54 2000
   Repository revision:	1.1038	/Projects/namd2/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1029)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1025)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.14	Wed Jul 26 19:32:35 2000
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1088	Wed Jul 26 20:12:31 2000
   Repository revision:	1.1088	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1033	Wed Jul 26 20:25:28 2000
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1024)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 26, 19100 @ 16:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Turned priorities on with CkSetQueueing.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1089	Wed Jul 26 21:13:07 2000
   Repository revision:	1.1089	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday July 28, 19100 @ 14:47
Author:	brunner

Update of /Projects/namd2/cvsroot/namd2/src
In directory bastogne.ks.uiuc.edu:/Home/p1/brunner/tmp/namd2-07.27/src

Modified Files:
	AlgSeven.C NamdCentLB.C NamdCentLB.h Rebalancer.C Rebalancer.h 
Log Message:
I added the capability to dump the load balancer data to an ASCII file
for off-line analysis.  This is commented out in strategy().
I also modified both Refine and AlgSeven to favor
home patches over proxies in deciding where to place computes.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.23	Thu Jul 27 20:11:03 2000
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.14	Fri Jul 28 19:45:30 2000
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdCentLB.h     	Status: Up-to-date

   Working revision:	1.3	Tue Jul 25 03:40:11 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.29	Fri Jul 28 18:46:00 2000
   Repository revision:	1.29	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: Rebalancer.h     	Status: Up-to-date

   Working revision:	1.8	Thu Jul 27 19:47:25 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/Rebalancer.h,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)


****************************************
Date:	Monday July 31, 19100 @ 1:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Updates for new version of AMPI in Charm.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.15	Thu Jul 27 18:41:40 2000
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Monday July 31, 19100 @ 14:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/arch

Modified Files:
	IBM-SP.arch 
Log Message:
Eliminated optimization until IBM fixes SP compilers.


===================================================================
File: IBM-SP.arch      	Status: Up-to-date

   Working revision:	1.4	Mon Jul 31 19:38:44 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.arch,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Monday July 31, 19100 @ 14:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv22412

Modified Files:
	IBM-SP.arch 
Log Message:
Updated SP opts for Blue Horizon.


===================================================================
File: IBM-SP.arch      	Status: Up-to-date

   Working revision:	1.5	Mon Jul 31 19:45:40 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.arch,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Monday July 31, 19100 @ 15:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv22528/arch

Modified Files:
	IBM-SP.arch 
Log Message:
Removed -Q so SP compiles.


===================================================================
File: IBM-SP.arch      	Status: Up-to-date

   Working revision:	1.6	Mon Jul 31 20:04:34 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.arch,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Monday July 31, 19100 @ 15:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv22545/src

Modified Files:
	ComputePme.C LdbCoordinator.C Tensor.h 
Log Message:
Small changes to make SP compilers happy.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.16	Mon Jul 31 20:04:55 2000
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.48	Mon Jul 31 20:04:55 2000
   Repository revision:	1.48	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: Tensor.h         	Status: Up-to-date

   Working revision:	1.6	Mon Jul 31 20:04:55 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/Tensor.h,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.1)


****************************************
Date:	Wednesday August 2, 19100 @ 11:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	AlgSeven.C 
Log Message:
Fixed crashing bug.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.24	Wed Aug  2 16:10:49 2000
   Repository revision:	1.24	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)


****************************************
Date:	Monday August 7, 19100 @ 11:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv1474

Added Files:
	Linux-Alpha-g++.arch Linux-Alpha.base 
Log Message:
Added Linux-Alpha port.


===================================================================
File: Linux-Alpha-g++.arch	Status: Up-to-date

   Working revision:	1.1	Mon Aug  7 16:27:35 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha-g++.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-Alpha.base 	Status: Up-to-date

   Working revision:	1.1	Mon Aug  7 16:27:35 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha.base,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday August 7, 19100 @ 22:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv2770

Modified Files:
	HomePatch.C ProxyPatch.C 
Log Message:
Prioritized proxy data and result messages.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1082	Tue Aug  8 03:13:15 2000
   Repository revision:	1.1082	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1030	Tue Aug  8 03:13:15 2000
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1023)
	release-2-1-beta-4       	(revision: 1.1023)
	release-2-1-beta-3       	(revision: 1.1023)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 11, 19100 @ 16:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	RecBisection.C 
Log Message:
Fixed bug with big, empty boxes.


===================================================================
File: RecBisection.C   	Status: Up-to-date

   Working revision:	1.8	Fri Aug 11 21:07:29 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/RecBisection.C,v

   Existing Tags:
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)


****************************************
Date:	Thursday August 17, 19100 @ 10:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv15994/arch

Modified Files:
	IBM-SP.arch 
Log Message:
SP compilers working again!


===================================================================
File: IBM-SP.arch      	Status: Up-to-date

   Working revision:	1.7	Thu Aug 17 15:39:54 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.arch,v

   Existing Tags:
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Thursday August 17, 19100 @ 10:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv15994/src

Modified Files:
	ComputeGlobalMaster.h 
Log Message:
SP compilers working again!


===================================================================
File: ComputeGlobalMaster.h	Status: Up-to-date

   Working revision:	1.7	Thu Aug 17 15:39:54 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMaster.h,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Friday August 18, 19100 @ 12:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Added Files:
	varsizemsg.h 
Log Message:
Macros for allocating, packing and unpacking varsize messages.


===================================================================
File: varsizemsg.h     	Status: Up-to-date

   Working revision:	1.1	Fri Aug 18 17:06:46 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/varsizemsg.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday August 18, 19100 @ 16:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	varsizemsg.h 
Log Message:
Fixed memory corruption bug.


===================================================================
File: varsizemsg.h     	Status: Up-to-date

   Working revision:	1.2	Fri Aug 18 21:31:15 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/varsizemsg.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday August 24, 19100 @ 22:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	BOCgroup.h BackEnd.C ComputePme.C ComputePme.h 
	ComputePmeMgr.ci PmeKSpace.C PmeKSpace.h WorkDistrib.C 
	WorkDistrib.h 
Log Message:
New PME scheme using FFTW directly (without AMPI).


===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.1009	Fri Aug 18 15:20:31 2000
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/BOCgroup.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1007)
	release-2-1-beta-3       	(revision: 1.1007)
	release-2-1-beta-2       	(revision: 1.1007)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.10	Fri Aug 18 19:18:50 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.17	Fri Aug 25 03:39:50 2000
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.6	Fri Aug 25 03:30:55 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputePmeMgr.ci 	Status: Up-to-date

   Working revision:	1.2	Thu Aug 24 19:14:32 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputePmeMgr.ci,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeKSpace.C      	Status: Up-to-date

   Working revision:	1.6	Fri Aug 25 02:34:48 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/PmeKSpace.C,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeKSpace.h      	Status: Up-to-date

   Working revision:	1.5	Fri Aug 25 02:29:42 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/PmeKSpace.h,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1090	Fri Aug 18 19:22:58 2000
   Repository revision:	1.1090	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1022	Fri Aug 18 19:23:41 2000
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 25, 19100 @ 13:42
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C ComputePme.h ComputePmeMgr.ci 
Log Message:
Broke up sending and computation into separate entry points for more
accurate breakdown in projections.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.18	Fri Aug 25 16:45:39 2000
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.7	Fri Aug 25 15:41:35 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputePmeMgr.ci 	Status: Up-to-date

   Working revision:	1.3	Fri Aug 25 15:40:13 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputePmeMgr.ci,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday August 25, 19100 @ 16:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C ComputePme.h ComputePmeMgr.ci PmeCoulomb.C 
	PmeRealSpace.C PmeRealSpace.h 
Log Message:
Compressed PME grid messages using pencils.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.19	Fri Aug 25 21:31:04 2000
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.8	Fri Aug 25 19:34:46 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputePmeMgr.ci 	Status: Up-to-date

   Working revision:	1.4	Fri Aug 25 18:50:25 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputePmeMgr.ci,v

   Existing Tags:
	No Tags Exist

===================================================================
File: PmeCoulomb.C     	Status: Up-to-date

   Working revision:	1.6	Fri Aug 25 19:36:00 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/PmeCoulomb.C,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: PmeRealSpace.C   	Status: Up-to-date

   Working revision:	1.4	Fri Aug 25 19:17:47 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/PmeRealSpace.C,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeRealSpace.h   	Status: Up-to-date

   Working revision:	1.4	Fri Aug 25 19:16:08 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/PmeRealSpace.h,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Friday August 25, 19100 @ 17:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
FFTW now uses "specific" plans based on actual input arrays.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.20	Fri Aug 25 22:44:56 2000
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Monday August 28, 19100 @ 11:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Compiles without FFTW again.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.21	Mon Aug 28 16:15:16 2000
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Monday August 28, 19100 @ 14:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeMgr.C ComputeMgr.ci ComputeMgr.h ComputePme.C 
	ComputePme.h 
Removed Files:
	ComputePmeMsgs.C ComputePmeMsgs.h 
Log Message:
Removing old/unused PME code.


===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1038	Mon Aug 28 16:41:14 2000
   Repository revision:	1.1038	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.ci    	Status: Up-to-date

   Working revision:	1.1010	Mon Aug 28 16:32:38 2000
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.ci,v

   Existing Tags:
	release-2-1              	(revision: 1.1009)
	release-2-1-beta-4       	(revision: 1.1009)
	release-2-1-beta-3       	(revision: 1.1009)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1020	Mon Aug 28 16:29:56 2000
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1013)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.22	Mon Aug 28 16:40:51 2000
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.9	Mon Aug 28 16:41:01 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: no file ComputePmeMsgs.C		Status: Up-to-date

   Working revision:	No entry for ComputePmeMsgs.C
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/Attic/ComputePmeMsgs.C,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: no file ComputePmeMsgs.h		Status: Up-to-date

   Working revision:	No entry for ComputePmeMsgs.h
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/Attic/ComputePmeMsgs.h,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Monday August 28, 19100 @ 14:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile 
Log Message:
Removing old/unused PME code.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1118	Mon Aug 28 19:42:20 2000
   Repository revision:	1.1118	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 28, 19100 @ 14:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Make.depends 
Log Message:
Removing old/unused PME code.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.68	Mon Aug 28 19:46:01 2000
   Repository revision:	1.68	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Monday August 28, 19100 @ 15:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Removing old/unused PME code.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.69	Mon Aug 28 19:59:14 2000
   Repository revision:	1.69	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1119	Mon Aug 28 20:02:16 2000
   Repository revision:	1.1119	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 28, 19100 @ 15:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C 
Removed Files:
	PmeCoulomb.C PmeCoulomb.h PmeFFT.C PmeFFT.h 
Log Message:
Removing old/unused PME code.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.23	Mon Aug 28 19:55:26 2000
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: no file PmeCoulomb.C		Status: Up-to-date

   Working revision:	No entry for PmeCoulomb.C
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/Attic/PmeCoulomb.C,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: no file PmeCoulomb.h		Status: Up-to-date

   Working revision:	No entry for PmeCoulomb.h
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/Attic/PmeCoulomb.h,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: no file PmeFFT.C		Status: Up-to-date

   Working revision:	No entry for PmeFFT.C
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/Attic/PmeFFT.C,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: no file PmeFFT.h		Status: Up-to-date

   Working revision:	No entry for PmeFFT.h
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/Attic/PmeFFT.h,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Monday August 28, 19100 @ 15:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	PatchMap.C 
Log Message:
Increased limit on number of computes.


===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1028	Mon Aug 28 20:23:56 2000
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 28, 19100 @ 15:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	main.C 
Log Message:
Cleanup up startup message.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1036	Mon Aug 28 20:15:21 2000
   Repository revision:	1.1036	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 28, 19100 @ 17:12
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Controller.C Sequencer.C SimParameters.C SimParameters.h 
Log Message:
New minimizer now default, works in both modes.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1123	Mon Aug 28 21:53:02 2000
   Repository revision:	1.1123	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1098	Mon Aug 28 21:32:12 2000
   Repository revision:	1.1098	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1106	Mon Aug 28 21:37:18 2000
   Repository revision:	1.1106	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1056	Mon Aug 28 21:16:00 2000
   Repository revision:	1.1056	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 28, 19100 @ 21:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
FullElectFrequency now defaults to nonbondedFreq.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1107	Tue Aug 29 01:59:38 2000
   Repository revision:	1.1107	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 28, 19100 @ 21:54
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Removed old/unused exclusion checking code.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.70	Tue Aug 29 02:27:45 2000
   Repository revision:	1.70	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1120	Tue Aug 29 02:52:44 2000
   Repository revision:	1.1120	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 28, 19100 @ 21:55
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeMap.h ComputeMgr.C ComputeNonbondedBase.h 
	ComputeNonbondedUtil.C Molecule.h WorkDistrib.C 
Removed Files:
	ComputeNonbondedExcl.C ComputeNonbondedExcl.h 
Log Message:
Removed old/unused exclusion checking code.


===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1022	Tue Aug 29 02:15:03 2000
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1039	Tue Aug 29 02:14:43 2000
   Repository revision:	1.1039	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1057	Tue Aug 29 02:32:44 2000
   Repository revision:	1.1057	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1034	Tue Aug 29 02:23:22 2000
   Repository revision:	1.1034	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1032	Tue Aug 29 02:36:14 2000
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1091	Tue Aug 29 02:45:09 2000
   Repository revision:	1.1091	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeNonbondedExcl.C		Status: Up-to-date

   Working revision:	No entry for ComputeNonbondedExcl.C
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeNonbondedExcl.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1025)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1023)
	release-2-0-pre-charm-syntax	(revision: 1.1021)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1021)
	release-alpha-1          	(revision: 1.1019)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: no file ComputeNonbondedExcl.h		Status: Up-to-date

   Working revision:	No entry for ComputeNonbondedExcl.h
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeNonbondedExcl.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1008)
	release-2-1-beta-4       	(revision: 1.1008)
	release-2-1-beta-3       	(revision: 1.1008)
	release-2-1-beta-2       	(revision: 1.1008)
	release-2-1-beta-1       	(revision: 1.1006)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 28, 19100 @ 21:59
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/fftw
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/fftw

Removed Files:
	COPYING Makefile fftw_mpi.c fftw_mpi.h fftwnd_mpi.c 
	rfftw_mpi.h rfftwnd_mpi.c sched.c sched.h transpose_mpi.c 
Log Message:
Removed unused FFTW/AMPI code.


===================================================================
File: no file COPYING		Status: Up-to-date

   Working revision:	No entry for COPYING
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/fftw/Attic/COPYING,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file Makefile		Status: Up-to-date

   Working revision:	No entry for Makefile
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/fftw/Attic/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file fftw_mpi.c		Status: Up-to-date

   Working revision:	No entry for fftw_mpi.c
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/fftw/Attic/fftw_mpi.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file fftw_mpi.h		Status: Up-to-date

   Working revision:	No entry for fftw_mpi.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/fftw/Attic/fftw_mpi.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file fftwnd_mpi.c		Status: Up-to-date

   Working revision:	No entry for fftwnd_mpi.c
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/fftw/Attic/fftwnd_mpi.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file rfftw_mpi.h		Status: Up-to-date

   Working revision:	No entry for rfftw_mpi.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/fftw/Attic/rfftw_mpi.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file rfftwnd_mpi.c		Status: Up-to-date

   Working revision:	No entry for rfftwnd_mpi.c
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/fftw/Attic/rfftwnd_mpi.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file sched.c		Status: Up-to-date

   Working revision:	No entry for sched.c
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/fftw/Attic/sched.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file sched.h		Status: Up-to-date

   Working revision:	No entry for sched.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/fftw/Attic/sched.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file transpose_mpi.c		Status: Up-to-date

   Working revision:	No entry for transpose_mpi.c
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/fftw/Attic/transpose_mpi.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday August 28, 19100 @ 22:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	config 
Log Message:
Removed trying to link fftw directory.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.16	Tue Aug 29 03:17:11 2000
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Tuesday August 29, 19100 @ 10:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv27041

Modified Files:
	AIX-RS6000-xlC.arch AIX-RS6000.fftw 
Log Message:
Compile AIX version on SP now.


===================================================================
File: AIX-RS6000-xlC.arch	Status: Up-to-date

   Working revision:	1.3	Tue Aug 29 15:34:48 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000-xlC.arch,v

   Existing Tags:
	release-2-1              	(revision: 1.1)

===================================================================
File: AIX-RS6000.fftw  	Status: Up-to-date

   Working revision:	1.4	Tue Aug 29 15:34:48 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000.fftw,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday August 29, 19100 @ 11:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Fixed uninitialized variable.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1108	Tue Aug 29 16:21:00 2000
   Repository revision:	1.1108	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 29, 19100 @ 17:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile 
Log Message:
Removed fftw directory.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1121	Tue Aug 29 22:09:57 2000
   Repository revision:	1.1121	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 29, 19100 @ 17:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C ComputePme.h SimParameters.C SimParameters.h 
Log Message:
Use subset of processors for PME FFT and recip sum.
PMEProcessors config file option.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.24	Tue Aug 29 21:57:15 2000
   Repository revision:	1.24	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.10	Tue Aug 29 21:21:02 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1109	Tue Aug 29 21:31:53 2000
   Repository revision:	1.1109	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1057	Tue Aug 29 21:28:48 2000
   Repository revision:	1.1057	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 29, 19100 @ 17:47
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory despina.ks.uiuc.edu:/tmp_mnt/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeIMD.C ComputeIMD.h IMDOutput.C IMDOutput.h Node.C 
	Node.h SimParameters.C SimParameters.h 
Log Message:
IMD now allows repeated connect/disconnect - former behavior disallowed
future connections after the first disconnect.  Two behaviors are supported:
wait, in which NAMD will pause when no connections are present, and non-wait,
in which NAMD never waits for connections.


===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.12	Tue Aug 29 21:12:48 2000
   Repository revision:	1.12	/home/cvs/namd/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ComputeIMD.h     	Status: Up-to-date

   Working revision:	1.4	Tue Aug 29 20:29:01 2000
   Repository revision:	1.4	/home/cvs/namd/cvsroot/namd2/src/ComputeIMD.h,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: IMDOutput.C      	Status: Up-to-date

   Working revision:	1.10	Tue Aug 29 19:22:53 2000
   Repository revision:	1.10	/home/cvs/namd/cvsroot/namd2/src/IMDOutput.C,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)

===================================================================
File: IMDOutput.h      	Status: Up-to-date

   Working revision:	1.7	Tue Aug 29 19:11:38 2000
   Repository revision:	1.7	/home/cvs/namd/cvsroot/namd2/src/IMDOutput.h,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1056	Tue Aug 29 19:53:25 2000
   Repository revision:	1.1056	/home/cvs/namd/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1028	Tue Aug 29 18:54:00 2000
   Repository revision:	1.1028	/home/cvs/namd/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1110	Tue Aug 29 22:42:01 2000
   Repository revision:	1.1110	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1058	Tue Aug 29 22:42:01 2000
   Repository revision:	1.1058	/home/cvs/namd/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 30, 19100 @ 10:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	HomePatch.C Sync.C 
Log Message:
Eliminated messages at startup.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1083	Wed Aug 30 15:40:12 2000
   Repository revision:	1.1083	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.15	Wed Aug 30 15:02:53 2000
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday August 30, 19100 @ 13:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Startup message and allocation tweaks.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1092	Wed Aug 30 17:52:59 2000
   Repository revision:	1.1092	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 30, 19100 @ 13:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	main.C 
Log Message:
Now prints out usage data.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1037	Wed Aug 30 18:17:54 2000
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 30, 19100 @ 16:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C ComputePme.h PmeRealSpace.C PmeRealSpace.h 
Log Message:
Reduced PME memory usage.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.25	Wed Aug 30 20:46:21 2000
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.11	Wed Aug 30 20:04:40 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeRealSpace.C   	Status: Up-to-date

   Working revision:	1.5	Wed Aug 30 20:48:20 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/PmeRealSpace.C,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeRealSpace.h   	Status: Up-to-date

   Working revision:	1.5	Wed Aug 30 20:03:40 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/PmeRealSpace.h,v

   Existing Tags:
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Thursday August 31, 19100 @ 10:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Now bit-copies Molecule data structures.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1049	Thu Aug 31 15:42:57 2000
   Repository revision:	1.1049	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday August 31, 19100 @ 17:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added memory usage tracking.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.71	Thu Aug 31 21:58:18 2000
   Repository revision:	1.71	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1122	Thu Aug 31 19:28:39 2000
   Repository revision:	1.1122	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday August 31, 19100 @ 17:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	BackEnd.C Controller.C Node.C main.C mainfunc.C 
Added Files:
	memusage.C memusage.h 
Log Message:
Added memory usage tracking.


===================================================================
File: memusage.C       	Status: Up-to-date

   Working revision:	1.1	Thu Aug 31 19:39:15 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/memusage.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: memusage.h       	Status: Up-to-date

   Working revision:	1.1	Thu Aug 31 19:37:55 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/memusage.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.11	Thu Aug 31 21:57:22 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1124	Thu Aug 31 20:14:32 2000
   Repository revision:	1.1124	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1057	Thu Aug 31 21:50:03 2000
   Repository revision:	1.1057	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1038	Thu Aug 31 20:03:45 2000
   Repository revision:	1.1038	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: mainfunc.C       	Status: Up-to-date

   Working revision:	1.8	Thu Aug 31 19:43:22 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/mainfunc.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday September 1, 19100 @ 11:48
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory urbana.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Updates for new IMD code.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.24	Fri Sep  1 16:46:44 2000
   Repository revision:	1.24	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday September 1, 19100 @ 16:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedBase.h Controller.C Sequencer.C 
	SimParameters.C 
Log Message:
Improved minimizer for fixed atoms, bad initial conditions.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1058	Fri Sep  1 17:07:52 2000
   Repository revision:	1.1058	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1125	Fri Sep  1 21:17:15 2000
   Repository revision:	1.1125	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1099	Fri Sep  1 17:13:31 2000
   Repository revision:	1.1099	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1111	Fri Sep  1 16:49:35 2000
   Repository revision:	1.1111	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 1, 19100 @ 17:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Sequencer.C Sequencer.h 
Log Message:
Final cleanup to minimizer.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1100	Fri Sep  1 22:47:28 2000
   Repository revision:	1.1100	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1034	Fri Sep  1 22:41:02 2000
   Repository revision:	1.1034	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 1, 19100 @ 17:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile 
Log Message:
Declaring official 2.2b1.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1123	Fri Sep  1 22:05:38 2000
   Repository revision:	1.1123	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 1, 19100 @ 17:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	main.C 
Log Message:
Declaring official 2.2b1.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1039	Fri Sep  1 22:06:31 2000
   Repository revision:	1.1039	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday September 2, 19100 @ 17:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Controller.C Controller.h ReductionMgr.h Sequencer.C 
Log Message:
Line minimizer detects bogus gradient (from truncation)
and uses golden section search instead.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1126	Sat Sep  2 21:39:13 2000
   Repository revision:	1.1126	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1036	Sat Sep  2 20:51:55 2000
   Repository revision:	1.1036	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1025	Sat Sep  2 20:46:06 2000
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1101	Sat Sep  2 20:49:11 2000
   Repository revision:	1.1101	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 4, 19100 @ 20:54
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Removed caps on number of PME processors.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.26	Tue Sep  5 01:54:03 2000
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Tuesday September 5, 19100 @ 14:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	README.txt announce.txt notes.txt 
Log Message:
Updated for 2.2b1.


===================================================================
File: README.txt       	Status: Up-to-date

   Working revision:	1.6	Tue Sep  5 18:55:14 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/README.txt,v

   Existing Tags:
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.2)

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.9	Tue Sep  5 19:18:17 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.13	Tue Sep  5 19:14:26 2000
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Tuesday September 5, 19100 @ 14:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	namd_version.tex ug_add.tex ug_basic.tex ug_start.tex 
Log Message:
Updated for 2.2b1.


===================================================================
File: namd_version.tex 	Status: Up-to-date

   Working revision:	1.7	Tue Sep  5 18:06:56 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/ug/namd_version.tex,v

   Existing Tags:
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.25	Tue Sep  5 16:41:11 2000
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.12	Tue Sep  5 16:46:43 2000
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.11)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.8	Tue Sep  5 16:13:47 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Tuesday September 5, 19100 @ 14:40
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_intro.tex 
Log Message:
Updated for 2.2b1.


===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.11	Tue Sep  5 19:40:48 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Tuesday September 5, 19100 @ 16:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	Makefile 
Log Message:
Fixed 2.1 -> 2.2b1.  Whoops.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.13	Tue Sep  5 21:32:51 2000
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Wednesday September 6, 19100 @ 17:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	CollectionMaster.C CollectionMaster.h 
Log Message:
Reduced memory reallocation in collections.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1025	Wed Sep  6 21:43:33 2000
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1022	Wed Sep  6 22:02:43 2000
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1021)
	release-2-1              	(revision: 1.1020)
	release-2-1-beta-4       	(revision: 1.1020)
	release-2-1-beta-3       	(revision: 1.1020)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday September 10, 19100 @ 15:06
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory titan:/tmp_mnt/Projects/justin/namd2/namd2/src

Modified Files:
	LdbCoordinator.C LdbCoordinator.h NamdCentLB.C Rebalancer.C 
	Rebalancer.h RefineOnly.C Set.C Set.h elements.h heap.C heap.h 
Log Message:
Plugged memory leaks in the load balancing code: added destructors to 
Set and heap and changed structs in elements to use Set instead of Set *.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.49	Sun Sep 10 18:47:27 2000
   Repository revision:	1.49	/home/cvs/namd/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.32	Sun Sep 10 18:47:33 2000
   Repository revision:	1.32	/home/cvs/namd/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.31)
	release-2-1              	(revision: 1.26)
	release-2-1-beta-4       	(revision: 1.26)
	release-2-1-beta-3       	(revision: 1.26)
	release-2-1-beta-2       	(revision: 1.26)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.23)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.15	Sun Sep 10 18:51:27 2000
   Repository revision:	1.15	/home/cvs/namd/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.14)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.30	Sun Sep 10 18:54:03 2000
   Repository revision:	1.30	/home/cvs/namd/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: Rebalancer.h     	Status: Up-to-date

   Working revision:	1.9	Sun Sep 10 18:39:42 2000
   Repository revision:	1.9	/home/cvs/namd/cvsroot/namd2/src/Rebalancer.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: RefineOnly.C     	Status: Up-to-date

   Working revision:	1.11	Sun Sep 10 19:09:23 2000
   Repository revision:	1.11	/home/cvs/namd/cvsroot/namd2/src/RefineOnly.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)

===================================================================
File: Set.C            	Status: Up-to-date

   Working revision:	1.8	Sun Sep 10 16:56:58 2000
   Repository revision:	1.8	/home/cvs/namd/cvsroot/namd2/src/Set.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.5)

===================================================================
File: Set.h            	Status: Up-to-date

   Working revision:	1.6	Sun Sep 10 16:50:50 2000
   Repository revision:	1.6	/home/cvs/namd/cvsroot/namd2/src/Set.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)

===================================================================
File: elements.h       	Status: Up-to-date

   Working revision:	1.6	Sun Sep 10 18:27:43 2000
   Repository revision:	1.6	/home/cvs/namd/cvsroot/namd2/src/elements.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: heap.C           	Status: Up-to-date

   Working revision:	1.6	Sun Sep 10 18:27:21 2000
   Repository revision:	1.6	/home/cvs/namd/cvsroot/namd2/src/heap.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: heap.h           	Status: Up-to-date

   Working revision:	1.5	Sun Sep 10 18:26:49 2000
   Repository revision:	1.5	/home/cvs/namd/cvsroot/namd2/src/heap.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.4)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)


****************************************
Date:	Monday September 11, 19100 @ 14:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	CollectionMaster.h CollectionMgr.C CollectionMgr.h 
Log Message:
Reduced reallocation in collections and eliminated conflict with use of
negative seq in Output.


===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1023	Mon Sep 11 19:38:38 2000
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1021)
	release-2-1              	(revision: 1.1020)
	release-2-1-beta-4       	(revision: 1.1020)
	release-2-1-beta-3       	(revision: 1.1020)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1020	Mon Sep 11 18:56:37 2000
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1020	Mon Sep 11 19:46:40 2000
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 11, 19100 @ 14:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Margin defaults to 0.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1112	Mon Sep 11 19:53:25 2000
   Repository revision:	1.1112	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 11, 19100 @ 17:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	varsizemsg.h 
Log Message:
Eliminated compiler warnings.


===================================================================
File: varsizemsg.h     	Status: Up-to-date

   Working revision:	1.3	Mon Sep 11 22:47:20 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/varsizemsg.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.2)


****************************************
Date:	Tuesday September 12, 19100 @ 13:20
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Added Files:
	erf.C 
Log Message:
Error function for WIN32 copied from OpenBSD.


===================================================================
File: erf.C            	Status: Up-to-date

   Working revision:	1.1	Tue Sep 12 18:18:40 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/erf.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday September 12, 19100 @ 21:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	NamdCentLB.C 
Log Message:
Changes to reduce memory growth.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.16	Tue Sep 12 21:53:10 2000
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Tuesday September 12, 19100 @ 21:59
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Molecule.C Molecule.h 
Log Message:
Changed int to int32 to save memory on T3E.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1050	Wed Sep 13 02:36:47 2000
   Repository revision:	1.1050	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1033	Wed Sep 13 02:32:06 2000
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday September 12, 19100 @ 22:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv2674

Modified Files:
	Molecule.C Molecule.h 
Log Message:
Finished int to int32 changes.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1051	Wed Sep 13 03:16:34 2000
   Repository revision:	1.1051	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1034	Wed Sep 13 03:16:34 2000
   Repository revision:	1.1034	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 13, 19100 @ 10:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv3720

Modified Files:
	ComputeAngles.C ComputeAngles.h ComputeBonds.C ComputeBonds.h 
	ComputeDihedrals.C ComputeDihedrals.h ComputeHomeTuples.h 
	ComputeImpropers.C ComputeImpropers.h ComputeSelfTuples.h 
	Molecule.C 
Log Message:
Completed int to int32 changes.


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1021	Wed Sep 13 15:58:28 2000
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1017	Wed Sep 13 15:58:28 2000
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1017	Wed Sep 13 15:58:28 2000
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1014)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1015	Wed Sep 13 15:58:28 2000
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1014)
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1022	Wed Sep 13 15:58:28 2000
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1021)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1016)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1014	Wed Sep 13 15:58:28 2000
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1033	Wed Sep 13 15:58:28 2000
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1020	Wed Sep 13 15:58:28 2000
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1014	Wed Sep 13 15:58:28 2000
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeSelfTuples.h	Status: Up-to-date

   Working revision:	1.5	Wed Sep 13 15:58:28 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeSelfTuples.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.4)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1052	Wed Sep 13 15:58:28 2000
   Repository revision:	1.1052	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 13, 19100 @ 13:31
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv3824/src

Modified Files:
	Molecule.C 
Log Message:
Turned off arena alignment to save memory.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1053	Wed Sep 13 18:31:24 2000
   Repository revision:	1.1053	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 13, 19100 @ 15:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Controller.C Sequencer.C 
Log Message:
Checkpointing and minimization now coexist.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1127	Wed Sep 13 19:59:34 2000
   Repository revision:	1.1127	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1102	Wed Sep 13 15:32:58 2000
   Repository revision:	1.1102	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 13, 19100 @ 15:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_start.tex 
Log Message:
Removed restriction on minimization and checkpointing.


===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.9	Wed Sep 13 20:09:32 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Wednesday September 13, 19100 @ 15:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	memusage.C 
Log Message:
Turned off sbrk call on WIN32.


===================================================================
File: memusage.C       	Status: Up-to-date

   Working revision:	1.2	Mon Sep 11 22:29:33 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/memusage.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1)


****************************************
Date:	Wednesday September 13, 19100 @ 15:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h Controller.C 
Log Message:
Restored exclusion checksum.  Warns of 2 atoms in same place.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1059	Wed Sep 13 20:43:02 2000
   Repository revision:	1.1059	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1035	Wed Sep 13 20:20:42 2000
   Repository revision:	1.1035	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1027	Wed Sep 13 20:20:01 2000
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1128	Wed Sep 13 20:48:07 2000
   Repository revision:	1.1128	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 13, 19100 @ 16:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	InfoStream.C 
Log Message:
Added fflush(stdout) to endi to fix CkPrintf when implemented as printf.


===================================================================
File: InfoStream.C     	Status: Up-to-date

   Working revision:	1.1006	Wed Sep 13 21:09:38 2000
   Repository revision:	1.1006	/Projects/namd2/cvsroot/namd2/src/InfoStream.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1005)
	release-2-1              	(revision: 1.1004)
	release-2-1-beta-4       	(revision: 1.1004)
	release-2-1-beta-3       	(revision: 1.1004)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 13, 19100 @ 17:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Controller.C ScriptTcl.C Sequencer.C mainfunc.C 
Log Message:
Barrier to avoid memory spike at end of run.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1129	Wed Sep 13 22:29:23 2000
   Repository revision:	1.1129	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.21	Wed Sep 13 22:12:34 2000
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1103	Wed Sep 13 22:29:43 2000
   Repository revision:	1.1103	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: mainfunc.C       	Status: Up-to-date

   Working revision:	1.9	Wed Sep 13 22:22:58 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/mainfunc.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.8)


****************************************
Date:	Wednesday September 13, 19100 @ 18:20
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Excludes processors from PME which would be empty anyway.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.27	Wed Sep 13 23:07:46 2000
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Wednesday September 13, 19100 @ 20:29
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ScriptTcl.C ScriptTcl.h 
Log Message:
Added "exit" and "abort" commands to Tcl.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.22	Thu Sep 14 01:27:49 2000
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.15	Thu Sep 14 01:20:06 2000
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Thursday September 14, 19100 @ 10:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	NamdState.C 
Log Message:
Removed old unused code.


===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1029	Thu Sep 14 15:21:16 2000
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 14, 19100 @ 10:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	main.C 
Log Message:
Added printing of processor count.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1040	Thu Sep 14 15:09:56 2000
   Repository revision:	1.1040	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 14, 19100 @ 10:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	BackEnd.C 
Log Message:
Modified set_new_handler to satisfy Windows.


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.12	Thu Sep 14 15:03:44 2000
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.11)


****************************************
Date:	Thursday September 14, 19100 @ 10:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	SimParameters.C mainfunc.C 
Log Message:
Fixed path separator on Windows.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1113	Thu Sep 14 15:30:35 2000
   Repository revision:	1.1113	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: mainfunc.C       	Status: Up-to-date

   Working revision:	1.10	Thu Sep 14 15:31:31 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/mainfunc.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.8)


****************************************
Date:	Thursday September 14, 19100 @ 12:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile 
Log Message:
Only one file per MOVE for Windows.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1124	Thu Sep 14 17:45:01 2000
   Repository revision:	1.1124	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 14, 19100 @ 15:01
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile config Make.depends 
Log Message:
One Makefile now builds Win32 and unix.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1125	Thu Sep 14 19:53:50 2000
   Repository revision:	1.1125	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.17	Thu Sep 14 19:57:11 2000
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)

===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.72	Thu Sep 14 17:55:40 2000
   Repository revision:	1.72	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Thursday September 14, 19100 @ 16:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	config Make.charm 
Log Message:
Config script now does Win32 (but runs on unix).


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.18	Thu Sep 14 20:33:30 2000
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)

===================================================================
File: Make.charm       	Status: Up-to-date

   Working revision:	1.6	Thu Sep 14 20:35:44 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/Make.charm,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Thursday September 14, 19100 @ 16:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Added Files:
	Win32-i686-MSVC.arch Win32.base 
Log Message:
Config script now does Win32 (but runs on unix).


===================================================================
File: Win32-i686-MSVC.arch	Status: Up-to-date

   Working revision:	1.1	Thu Sep 14 21:32:43 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Win32-i686-MSVC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Win32.base       	Status: Up-to-date

   Working revision:	1.1	Thu Sep 14 20:12:44 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Win32.base,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday September 14, 19100 @ 16:54
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	Win32-i686-MSVC.arch 
Log Message:
Added optimization.


===================================================================
File: Win32-i686-MSVC.arch	Status: Up-to-date

   Working revision:	1.2	Thu Sep 14 21:52:30 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Win32-i686-MSVC.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday September 14, 19100 @ 17:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	Win32-i686-MSVC.arch 
Log Message:
Removed bogus option.


===================================================================
File: Win32-i686-MSVC.arch	Status: Up-to-date

   Working revision:	1.3	Thu Sep 14 22:09:38 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Win32-i686-MSVC.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday September 14, 19100 @ 17:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile 
Log Message:
Added LINKOPTS for Win32.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1126	Thu Sep 14 21:06:00 2000
   Repository revision:	1.1126	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 14, 19100 @ 17:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile README.txt announce.txt notes.txt 
Log Message:
Updated version to 2.2b2.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1127	Thu Sep 14 22:15:24 2000
   Repository revision:	1.1127	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: README.txt       	Status: Up-to-date

   Working revision:	1.7	Thu Sep 14 22:15:57 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/README.txt,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.2)

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.10	Thu Sep 14 22:19:09 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.14	Thu Sep 14 22:41:38 2000
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday September 15, 19100 @ 10:55
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	Win32-i686-MSVC.arch 
Log Message:
IMD (and vmdsock) now works on Windows!


===================================================================
File: Win32-i686-MSVC.arch	Status: Up-to-date

   Working revision:	1.4	Fri Sep 15 15:29:58 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Win32-i686-MSVC.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday September 15, 19100 @ 10:55
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeIMD.C vmdsock.C vmdsock.h 
Log Message:
IMD (and vmdsock) now works on Windows!


===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.13	Fri Sep 15 15:20:07 2000
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: vmdsock.C        	Status: Up-to-date

   Working revision:	1.11	Fri Sep 15 15:42:45 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/vmdsock.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: vmdsock.h        	Status: Up-to-date

   Working revision:	1.7	Fri Sep 15 15:15:31 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/vmdsock.h,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Friday September 15, 19100 @ 15:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile 
Log Message:
Tcl and FFTW now work on Win32.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1128	Fri Sep 15 18:17:43 2000
   Repository revision:	1.1128	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 15, 19100 @ 15:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Added Files:
	Win32.fftw Win32.tcl 
Log Message:
Tcl and FFTW now work on Win32.


===================================================================
File: Win32.fftw       	Status: Up-to-date

   Working revision:	1.1	Fri Sep 15 16:01:49 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Win32.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Win32.tcl        	Status: Up-to-date

   Working revision:	1.1	Fri Sep 15 18:23:23 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Win32.tcl,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday September 15, 19100 @ 15:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
FFTW now shows progress as it measures.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.28	Fri Sep 15 20:19:42 2000
   Repository revision:	1.28	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Friday September 15, 19100 @ 15:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Minor format change.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.29	Fri Sep 15 20:47:33 2000
   Repository revision:	1.29	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Friday September 15, 19100 @ 15:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Limited output to first processor.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.30	Fri Sep 15 20:52:34 2000
   Repository revision:	1.30	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Monday September 18, 19100 @ 10:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
Removed reference to specific version of VMD.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.15	Mon Sep 18 15:41:35 2000
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Monday September 18, 19100 @ 11:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/tmp/namd2

Modified Files:
	Makefile 
Log Message:
Reversed order of moves for .def and .decl files.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1129	Mon Sep 18 16:22:52 2000
   Repository revision:	1.1129	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 18, 19100 @ 11:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile 
Log Message:
Added winrelease target to build zip files.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1130	Mon Sep 18 16:40:27 2000
   Repository revision:	1.1130	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 18, 19100 @ 11:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	Win32.tcl 
Log Message:
Fixed so Makefile works on unix too.


===================================================================
File: Win32.tcl        	Status: Up-to-date

   Working revision:	1.2	Mon Sep 18 15:58:33 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Win32.tcl,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday September 18, 19100 @ 14:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Turned on and fixed erf() and erfc() for Win32.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.73	Mon Sep 18 16:50:06 2000
   Repository revision:	1.73	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1131	Mon Sep 18 16:47:48 2000
   Repository revision:	1.1131	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 18, 19100 @ 14:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedUtil.C erf.C 
Log Message:
Turned on and fixed erf() and erfc() for Win32.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1036	Mon Sep 18 16:46:25 2000
   Repository revision:	1.1036	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: erf.C            	Status: Up-to-date

   Working revision:	1.2	Mon Sep 18 19:31:19 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/erf.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday September 18, 19100 @ 14:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
updated


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.16	Mon Sep 18 19:51:08 2000
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Monday September 18, 19100 @ 14:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	Makefile namd_version.tex ug_intro.tex 
Log Message:
updated


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.14	Mon Sep 18 19:43:31 2000
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: namd_version.tex 	Status: Up-to-date

   Working revision:	1.8	Mon Sep 18 19:43:35 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/ug/namd_version.tex,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.12	Mon Sep 18 19:52:27 2000
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Tuesday September 19, 19100 @ 15:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	NamdOneTools.C Output.C dcdlib.C 
Log Message:
Operate on binary files in binary mode.  Important for Win32.


===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.25	Tue Sep 19 20:12:29 2000
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.23)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.16)
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.36	Tue Sep 19 20:09:48 2000
   Repository revision:	1.36	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.35)
	release-2-2-beta-1       	(revision: 1.35)
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.15	Tue Sep 19 20:33:09 2000
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday September 19, 19100 @ 15:59
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Output.C common.C dcdlib.C 
Log Message:
Call remove before rename on Win32 only.


===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.37	Tue Sep 19 20:47:22 2000
   Repository revision:	1.37	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.35)
	release-2-2-beta-1       	(revision: 1.35)
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1034	Tue Sep 19 20:48:40 2000
   Repository revision:	1.1034	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.16	Tue Sep 19 20:50:05 2000
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday September 20, 19100 @ 13:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Controller.C Node.C Node.ci Node.h Sequencer.C 
Log Message:
Now exits correctly when simulation is unstable.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1130	Wed Sep 20 14:56:41 2000
   Repository revision:	1.1130	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1058	Wed Sep 20 18:07:51 2000
   Repository revision:	1.1058	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.1057)
	release-2-2-beta-1       	(revision: 1.1057)
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1021	Wed Sep 20 16:41:39 2000
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1029	Wed Sep 20 16:42:09 2000
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.1028)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1104	Wed Sep 20 16:42:36 2000
   Repository revision:	1.1104	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 20, 19100 @ 17:42
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeTcl.C ScriptTcl.C TclCommands.C TclCommands.h 
Log Message:
Eliminated deprecated use of Tcl interp->result.


===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.21	Wed Sep 20 22:02:58 2000
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.20)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.17)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.15)
	release-2-1-beta-2       	(revision: 1.14)
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.23	Wed Sep 20 22:09:24 2000
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: TclCommands.C    	Status: Up-to-date

   Working revision:	1.8	Wed Sep 20 22:35:35 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/TclCommands.C,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: TclCommands.h    	Status: Up-to-date

   Working revision:	1.6	Wed Sep 20 21:53:08 2000
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/TclCommands.h,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday September 21, 19100 @ 13:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Controller.C 
Log Message:
Turned off bogus exclusion error message when using MTS for nonbonded.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1131	Thu Sep 21 18:13:11 2000
   Repository revision:	1.1131	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 21, 19100 @ 13:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	common.C 
Log Message:
Fixed buffer overrun in NAMD_bug.


===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1035	Thu Sep 21 18:23:12 2000
   Repository revision:	1.1035	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 22, 19100 @ 16:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile 
Log Message:
Fixes to work with the new version of Charm.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1132	Fri Sep 22 21:42:27 2000
   Repository revision:	1.1132	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 22, 19100 @ 17:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile README.txt announce.txt notes.txt 
Log Message:
Updated version to 2.2b3.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1133	Fri Sep 22 22:07:07 2000
   Repository revision:	1.1133	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: README.txt       	Status: Up-to-date

   Working revision:	1.8	Fri Sep 22 22:07:16 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/README.txt,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.2)

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.11	Fri Sep 22 22:07:29 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.17	Fri Sep 22 22:07:42 2000
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday September 22, 19100 @ 17:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	Makefile namd_version.tex 
Log Message:
Updated version to 2.2b3.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.15	Fri Sep 22 22:08:39 2000
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: namd_version.tex 	Status: Up-to-date

   Working revision:	1.9	Fri Sep 22 22:08:42 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/ug/namd_version.tex,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Saturday September 23, 19100 @ 1:16
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory titan:/tmp_mnt/Projects/justin/namd2/namd2/src

Modified Files:
	IMDOutput.h 
Log Message:
Deleted dead code.


===================================================================
File: IMDOutput.h      	Status: Up-to-date

   Working revision:	1.8	Sat Sep 23 06:11:23 2000
   Repository revision:	1.8	/home/cvs/namd/cvsroot/namd2/src/IMDOutput.h,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Monday September 25, 19100 @ 11:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/tmp/namd2

Modified Files:
	Makefile 
Log Message:
Added daemon_background.exe to windows archive.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1134	Mon Sep 25 16:42:05 2000
   Repository revision:	1.1134	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 25, 19100 @ 11:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/tmp/namd2

Modified Files:
	notes.txt 
Log Message:
Commented on daemon_background.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.18	Mon Sep 25 16:48:31 2000
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Wednesday September 27, 19100 @ 17:08
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory urbana.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Fixed incorrect description of IMDWait - mistake pointed out by L. Woods.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.26	Wed Sep 27 22:06:15 2000
   Repository revision:	1.26	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Thursday September 28, 19100 @ 11:07
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Added Files:
	Linux-Alpha-cxx.arch Linux-Alpha.fftw Linux-Alpha.tcl 
Log Message:
Ported to Alpha Linux w/ Compaq compilers.


===================================================================
File: Linux-Alpha-cxx.arch	Status: Up-to-date

   Working revision:	1.1	Wed Sep 27 16:48:50 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha-cxx.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-Alpha.fftw 	Status: Up-to-date

   Working revision:	1.1	Thu Sep 28 02:41:21 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-Alpha.tcl  	Status: Up-to-date

   Working revision:	1.1	Thu Sep 28 15:47:39 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha.tcl,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday September 28, 19100 @ 13:25
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv11326

Modified Files:
	WorkDistrib.C WorkDistrib.ci WorkDistrib.h 
Log Message:
ComputePme into a separate enqueuePme queue.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1093	Thu Sep 28 18:25:30 2000
   Repository revision:	1.1093	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1014	Thu Sep 28 18:25:30 2000
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	release-2-2-beta-3       	(revision: 1.1013)
	release-2-2-beta-2       	(revision: 1.1013)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1023	Thu Sep 28 18:25:30 2000
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 29, 19100 @ 14:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/tmp/namd2

Modified Files:
	Makefile README.txt announce.txt notes.txt 
Log Message:
Updated to 2.2, added release notes.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1135	Fri Sep 29 18:54:14 2000
   Repository revision:	1.1135	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: README.txt       	Status: Up-to-date

   Working revision:	1.9	Fri Sep 29 19:11:33 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/README.txt,v

   Existing Tags:
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.2)

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.12	Fri Sep 29 18:56:55 2000
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.19	Fri Sep 29 19:44:09 2000
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday September 29, 19100 @ 14:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/tmp/namd2/ug

Modified Files:
	Makefile namd_version.tex 
Log Message:
Updated to 2.2.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.16	Fri Sep 29 18:54:02 2000
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: namd_version.tex 	Status: Up-to-date

   Working revision:	1.10	Fri Sep 29 18:54:05 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/ug/namd_version.tex,v

   Existing Tags:
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Friday September 29, 19100 @ 14:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/tmp/namd2

Modified Files:
	notes.txt 
Log Message:
small fixes


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.20	Fri Sep 29 19:49:03 2000
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday September 29, 19100 @ 15:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/tmp/namd2/ug

Modified Files:
	ug_avail.tex ug_intro.tex ug_runit.tex ug_sample.tex 
Log Message:
Updated many things for 2.2.


===================================================================
File: ug_avail.tex     	Status: Up-to-date

   Working revision:	1.5	Fri Sep 29 20:41:15 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/ug/ug_avail.tex,v

   Existing Tags:
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.13	Fri Sep 29 20:41:15 2000
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ug_runit.tex     	Status: Up-to-date

   Working revision:	1.4	Fri Sep 29 20:41:15 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/ug/ug_runit.tex,v

   Existing Tags:
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_sample.tex    	Status: Up-to-date

   Working revision:	1.2	Fri Sep 29 20:33:47 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/ug/ug_sample.tex,v

   Existing Tags:
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)
	release-2-1-beta-3       	(revision: 1.1)
	release-2-1-beta-2       	(revision: 1.1)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Friday September 29, 19100 @ 17:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/tmp/namd2

Modified Files:
	notes.txt 
Log Message:
grammar fix


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.21	Fri Sep 29 22:39:22 2000
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Tuesday October 3, 19100 @ 11:19
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv21327

Modified Files:
	ccsinterface.C 
Log Message:
changed ccsinterface.C according to new charm++ ccs interface change made by Orion.


===================================================================
File: ccsinterface.C   	Status: Up-to-date

   Working revision:	1.8	Tue Oct  3 16:19:21 2000
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ccsinterface.C,v

   Existing Tags:
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Tuesday October 3, 19100 @ 20:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory cancun:/tmp/namd2

Modified Files:
	Makefile 
Log Message:
Turned off default compile of DPMTA and DPME.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1136	Wed Oct  4 00:31:58 2000
   Repository revision:	1.1136	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday October 3, 19100 @ 20:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory cancun:/tmp/namd2

Modified Files:
	Make.charm 
Log Message:
Updated for new charm build.


===================================================================
File: Make.charm       	Status: Up-to-date

   Working revision:	1.7	Wed Oct  4 01:22:25 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/Make.charm,v

   Existing Tags:
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Tuesday October 3, 19100 @ 20:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory cancun:/tmp/namd2/arch

Modified Files:
	Linux-Alpha-cxx.arch 
Log Message:
Updated for new charm build.


===================================================================
File: Linux-Alpha-cxx.arch	Status: Up-to-date

   Working revision:	1.2	Wed Oct  4 01:22:17 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha-cxx.arch,v

   Existing Tags:
	release-2-2              	(revision: 1.1)


****************************************
Date:	Wednesday October 4, 19100 @ 9:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Win32-i686-MSVC.arch 
Log Message:
Fixes to compile on Win32.


===================================================================
File: Win32-i686-MSVC.arch	Status: Up-to-date

   Working revision:	1.5	Wed Oct  4 14:42:52 2000
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Win32-i686-MSVC.arch,v

   Existing Tags:
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)


****************************************
Date:	Wednesday October 4, 19100 @ 9:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Controller.C Node.C ccsinterface.C ccsinterface.h 
Log Message:
Fixes to compile on Win32.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1132	Wed Oct  4 14:44:13 2000
   Repository revision:	1.1132	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1059	Wed Oct  4 14:44:20 2000
   Repository revision:	1.1059	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1057)
	release-2-2-beta-1       	(revision: 1.1057)
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ccsinterface.C   	Status: Up-to-date

   Working revision:	1.9	Wed Oct  4 14:44:27 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ccsinterface.C,v

   Existing Tags:
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ccsinterface.h   	Status: Up-to-date

   Working revision:	1.7	Wed Oct  4 14:44:32 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ccsinterface.h,v

   Existing Tags:
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Wednesday October 4, 19100 @ 10:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory proteus.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Linux-Alpha-cxx.arch Linux-Alpha.fftw 
Log Message:
alpha-linux fixes


===================================================================
File: Linux-Alpha-cxx.arch	Status: Up-to-date

   Working revision:	1.3	Wed Oct  4 15:29:10 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha-cxx.arch,v

   Existing Tags:
	release-2-2              	(revision: 1.1)

===================================================================
File: Linux-Alpha.fftw 	Status: Up-to-date

   Working revision:	1.2	Wed Oct  4 15:23:41 2000
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha.fftw,v

   Existing Tags:
	release-2-2              	(revision: 1.1)


****************************************
Date:	Wednesday October 11, 19100 @ 15:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Minimization doesn't need a temperature.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1114	Wed Oct 11 20:07:04 2000
   Repository revision:	1.1114	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 11, 19100 @ 17:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory cancun:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Controller.C 
Log Message:
Fixed minimization not writing final output files.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1133	Wed Oct 11 22:15:36 2000
   Repository revision:	1.1133	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 11, 19100 @ 21:12
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Controller.C Controller.h Node.h ScriptTcl.C ScriptTcl.h 
	Sequencer.C Sequencer.h SimParameters.C SimParameters.h 
	mainfunc.C 
Log Message:
Simplified script vs non-script outer loops.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1134	Thu Oct 12 01:43:45 2000
   Repository revision:	1.1134	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1037	Thu Oct 12 01:41:56 2000
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1030	Wed Oct 11 23:17:08 2000
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1028)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.24	Wed Oct 11 23:33:19 2000
   Repository revision:	1.24	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.16	Wed Oct 11 23:30:36 2000
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1105	Thu Oct 12 01:44:04 2000
   Repository revision:	1.1105	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1035	Thu Oct 12 01:45:37 2000
   Repository revision:	1.1035	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1115	Wed Oct 11 22:46:22 2000
   Repository revision:	1.1115	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1059	Wed Oct 11 22:46:33 2000
   Repository revision:	1.1059	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: mainfunc.C       	Status: Up-to-date

   Working revision:	1.11	Thu Oct 12 02:03:55 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/mainfunc.C,v

   Existing Tags:
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.8)


****************************************
Date:	Sunday October 29, 19100 @ 19:12
Author:	sameer

Update of /Projects/namd2/cvsroot/namd2/src
In directory bogota.ks.uiuc.edu:/Projects/collaboratory/sameer/namd2/src

Modified Files:
	ccsinterface.C 
Log Message:
new Ccs


===================================================================
File: ccsinterface.C   	Status: Up-to-date

   Working revision:	1.10	Mon Oct 23 18:20:56 2000
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ccsinterface.C,v

   Existing Tags:
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Sunday October 29, 19100 @ 22:51
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi.ks.uiuc.edu:/tmp/cvs-serv16430

Modified Files:
	Rebalancer.C 
Log Message:
(optimize it)check if donor has computes availale, otherwise skip.


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.31	Mon Oct 30 04:51:17 2000
   Repository revision:	1.31	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)


****************************************
Date:	Thursday November 2, 19100 @ 12:53
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi.ks.uiuc.edu:/tmp/cvs-serv27372

Modified Files:
	SimParameters.C SimParameters.h WorkDistrib.C 
Log Message:
add parameters 'numAtomsSelf' and 'numAtomsPair' to control the partition of SelfCompute and PairComputes.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1116	Thu Nov  2 18:53:27 2000
   Repository revision:	1.1116	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1060	Thu Nov  2 18:53:27 2000
   Repository revision:	1.1060	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1094	Thu Nov  2 18:53:27 2000
   Repository revision:	1.1094	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday November 3, 19100 @ 11:05
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv9222

Modified Files:
	PatchMap.C 
Log Message:
newCid() now automatically allocate more space.


===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1029	Fri Nov  3 17:05:36 2000
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1028)
	release-2-2-beta-3       	(revision: 1.1028)
	release-2-2-beta-2       	(revision: 1.1028)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday November 3, 19100 @ 11:08
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv9264

Modified Files:
	WorkDistrib.C 
Log Message:
bug fix for partitioning NonbondedCompute


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1095	Fri Nov  3 17:07:59 2000
   Repository revision:	1.1095	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday November 4, 19100 @ 18:36
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi.ks.uiuc.edu:/tmp/cvs-serv4576

Modified Files:
	SimParameters.h SimParameters.C 
Log Message:
add numAtomsPair2 parameter to split the patches by edge.


===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1061	Sun Nov  5 00:35:59 2000
   Repository revision:	1.1061	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1117	Sun Nov  5 00:35:59 2000
   Repository revision:	1.1117	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday November 4, 19100 @ 18:37
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi.ks.uiuc.edu:/tmp/cvs-serv4602

Modified Files:
	WorkDistrib.C 
Log Message:
partition pair compute according to numAtomPair and numAtomPair2.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1096	Sun Nov  5 00:37:28 2000
   Repository revision:	1.1096	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday November 17, 19100 @ 10:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ScriptTcl.C 
Log Message:
Replaced free() with Tcl_Free().


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.25	Fri Nov 17 16:20:12 2000
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Friday November 17, 19100 @ 10:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeTcl.C TclCommands.C TclCommands.h 
Log Message:
Changed free() to Tcl_Free() and removed dead code.


===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.22	Fri Nov 17 16:25:41 2000
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-2              	(revision: 1.21)
	release-2-2-beta-3       	(revision: 1.21)
	release-2-2-beta-2       	(revision: 1.20)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.17)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.15)
	release-2-1-beta-2       	(revision: 1.14)
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: TclCommands.C    	Status: Up-to-date

   Working revision:	1.9	Fri Nov 17 16:36:55 2000
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/TclCommands.C,v

   Existing Tags:
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: TclCommands.h    	Status: Up-to-date

   Working revision:	1.7	Fri Nov 17 16:38:19 2000
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/TclCommands.h,v

   Existing Tags:
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Saturday November 18, 19100 @ 21:57
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv13631

Modified Files:
	BackEnd.C Communicate.C ComputeGlobal.C ComputeMgr.C 
	ComputeSMD.C ConfigList.C InfoStream.h NamdCentLB.C Node.C 
	Output.C PatchMap.C ScriptTcl.C SimParameters.C Sync.C 
	common.C common.h mainfunc.C vmdsock.C 
Log Message:
make changes to these files now namd2 can compile under cygwin/Windows.


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.13	Sun Nov 19 03:57:18 2000
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)

===================================================================
File: Communicate.C    	Status: Up-to-date

   Working revision:	1.1008	Sun Nov 19 03:57:18 2000
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/Communicate.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1007)
	release-2-2-beta-3       	(revision: 1.1007)
	release-2-2-beta-2       	(revision: 1.1007)
	release-2-2-beta-1       	(revision: 1.1007)
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.24	Sun Nov 19 03:57:19 2000
   Repository revision:	1.24	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.23)
	release-2-2-beta-1       	(revision: 1.23)
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1040	Sun Nov 19 03:57:20 2000
   Repository revision:	1.1040	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.13	Sun Nov 19 03:57:20 2000
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1017	Sun Nov 19 03:57:20 2000
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1016)
	release-2-2-beta-3       	(revision: 1.1016)
	release-2-2-beta-2       	(revision: 1.1016)
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1009	Sun Nov 19 03:57:22 2000
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/InfoStream.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1008)
	release-2-2-beta-3       	(revision: 1.1008)
	release-2-2-beta-2       	(revision: 1.1008)
	release-2-2-beta-1       	(revision: 1.1008)
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.17	Sun Nov 19 03:57:23 2000
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1060	Sun Nov 19 03:57:24 2000
   Repository revision:	1.1060	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1057)
	release-2-2-beta-1       	(revision: 1.1057)
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.38	Sun Nov 19 03:57:27 2000
   Repository revision:	1.38	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-2              	(revision: 1.37)
	release-2-2-beta-3       	(revision: 1.37)
	release-2-2-beta-2       	(revision: 1.35)
	release-2-2-beta-1       	(revision: 1.35)
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1030	Sun Nov 19 03:57:28 2000
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1028)
	release-2-2-beta-3       	(revision: 1.1028)
	release-2-2-beta-2       	(revision: 1.1028)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.26	Sun Nov 19 03:57:30 2000
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1118	Sun Nov 19 03:57:43 2000
   Repository revision:	1.1118	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.16	Sun Nov 19 03:57:43 2000
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.15)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1036	Sun Nov 19 03:57:44 2000
   Repository revision:	1.1036	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1035)
	release-2-2-beta-3       	(revision: 1.1035)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1034	Sun Nov 19 03:57:44 2000
   Repository revision:	1.1034	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1024)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: mainfunc.C       	Status: Up-to-date

   Working revision:	1.12	Sun Nov 19 03:57:44 2000
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/mainfunc.C,v

   Existing Tags:
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.8)

===================================================================
File: vmdsock.C        	Status: Up-to-date

   Working revision:	1.12	Sun Nov 19 03:57:44 2000
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/vmdsock.C,v

   Existing Tags:
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Sunday November 19, 19100 @ 15:44
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv13766

Added Files:
	Cygwin-i686.arch Cygwin-i686.base Cygwin-i686.fftw 
	Cygwin-i686.tcl 
Log Message:
config files for CYGWIN on windows


===================================================================
File: Cygwin-i686.arch 	Status: Up-to-date

   Working revision:	1.1	Sun Nov 19 21:44:41 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Cygwin-i686.base 	Status: Up-to-date

   Working revision:	1.1	Sun Nov 19 21:44:41 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Cygwin-i686.fftw 	Status: Up-to-date

   Working revision:	1.1	Sun Nov 19 21:44:41 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Cygwin-i686.tcl  	Status: Up-to-date

   Working revision:	1.1	Sun Nov 19 21:44:41 2000
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686.tcl,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday November 19, 19100 @ 15:50
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv14172

Modified Files:
	BackEnd.C 
Log Message:
oops, syntax error in #if


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.14	Sun Nov 19 21:50:20 2000
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)


****************************************
Date:	Wednesday November 29, 19100 @ 10:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Small nomenclature fix.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.27	Wed Nov 29 16:47:33 2000
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Wednesday November 29, 19100 @ 13:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	ug_basic.tex 
Log Message:
fixed lies about stepspercycle


===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.13	Wed Nov 29 19:17:52 2000
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.11)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday December 1, 19100 @ 17:00
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
Fixed bug with migration in non-orthogonal BCs.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1084	Fri Dec  1 22:46:48 2000
   Repository revision:	1.1084	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday December 12, 19100 @ 16:32
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv3074

Modified Files:
	common.h 
Log Message:
define proxy spanning tree factor.


===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1035	Tue Dec 12 22:32:21 2000
   Repository revision:	1.1035	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1024)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday December 12, 19100 @ 16:38
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv3194

Modified Files:
	Sync.h Sync.ci Sync.C 
Log Message:
add destructor for Sync;
Sync will also synchronize proxies and make sure they all get updated before computes are fired on each node.


===================================================================
File: Sync.h           	Status: Up-to-date

   Working revision:	1.4	Tue Dec 12 22:38:53 2000
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/Sync.h,v

   Existing Tags:
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)

===================================================================
File: Sync.ci          	Status: Up-to-date

   Working revision:	1.3	Tue Dec 12 22:38:53 2000
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/Sync.ci,v

   Existing Tags:
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)

===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.17	Tue Dec 12 22:38:53 2000
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.15)


****************************************
Date:	Tuesday December 12, 19100 @ 16:57
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv3393

Modified Files:
	RefineOnly.C 
Log Message:
printout number of Computes


===================================================================
File: RefineOnly.C     	Status: Up-to-date

   Working revision:	1.11	Tue Dec 12 22:57:36 2000
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/RefineOnly.C,v

   Existing Tags:
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)


****************************************
Date:	Tuesday December 12, 19100 @ 16:59
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv3476

Modified Files:
	NamdTypes.h 
Log Message:
add type NodeIDList.


===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1019	Tue Dec 12 22:59:18 2000
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1018)
	release-2-2-beta-3       	(revision: 1.1018)
	release-2-2-beta-2       	(revision: 1.1018)
	release-2-2-beta-1       	(revision: 1.1018)
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1012)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 13, 19100 @ 0:18
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv6446

Modified Files:
	ProxyPatch.h ProxyPatch.C 
Log Message:
proxy spanning tree


===================================================================
File: ProxyPatch.h     	Status: Up-to-date

   Working revision:	1.1004	Wed Dec 13 06:18:55 2000
   Repository revision:	1.1004	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1003)
	release-2-2-beta-3       	(revision: 1.1003)
	release-2-2-beta-2       	(revision: 1.1003)
	release-2-2-beta-1       	(revision: 1.1003)
	release-2-1              	(revision: 1.1002)
	release-2-1-beta-4       	(revision: 1.1002)
	release-2-1-beta-3       	(revision: 1.1002)
	release-2-1-beta-2       	(revision: 1.1002)
	release-2-1-beta-1       	(revision: 1.1000)
	release-2-0-pre-charm-syntax	(revision: 1.1000)
	release-2-0              	(revision: 1.1000)
	release-2-0-beta-3       	(revision: 1.1000)
	release-2-0-beta-2       	(revision: 1.1000)
	release-alpha-1          	(revision: 1.1000)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1031	Wed Dec 13 06:18:55 2000
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1023)
	release-2-1-beta-4       	(revision: 1.1023)
	release-2-1-beta-3       	(revision: 1.1023)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 13, 19100 @ 0:23
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv6538

Modified Files:
	ProxyMgr.ci ProxyMgr.h ProxyMgr.C 
Log Message:
add proxy spanning tree, default turned off.


===================================================================
File: ProxyMgr.ci      	Status: Up-to-date

   Working revision:	1.1008	Wed Dec 13 06:23:01 2000
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.ci,v

   Existing Tags:
	release-2-2              	(revision: 1.1007)
	release-2-2-beta-3       	(revision: 1.1007)
	release-2-2-beta-2       	(revision: 1.1007)
	release-2-2-beta-1       	(revision: 1.1007)
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.h       	Status: Up-to-date

   Working revision:	1.1020	Wed Dec 13 06:23:01 2000
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1019)
	release-2-2-beta-3       	(revision: 1.1019)
	release-2-2-beta-2       	(revision: 1.1019)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1034	Wed Dec 13 06:23:01 2000
   Repository revision:	1.1034	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1023)
	release-2-0              	(revision: 1.1023)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1023)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 13, 19100 @ 0:24
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv6591

Modified Files:
	ComputeMgr.h ComputeMgr.ci ComputeMgr.C 
Log Message:
after load balancing, add a stage to rebuild spanning tree.


===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1021	Wed Dec 13 06:24:25 2000
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1013)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.ci    	Status: Up-to-date

   Working revision:	1.1011	Wed Dec 13 06:24:25 2000
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.ci,v

   Existing Tags:
	release-2-2              	(revision: 1.1010)
	release-2-2-beta-3       	(revision: 1.1010)
	release-2-2-beta-2       	(revision: 1.1010)
	release-2-2-beta-1       	(revision: 1.1010)
	release-2-1              	(revision: 1.1009)
	release-2-1-beta-4       	(revision: 1.1009)
	release-2-1-beta-3       	(revision: 1.1009)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1041	Wed Dec 13 06:24:25 2000
   Repository revision:	1.1041	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 13, 19100 @ 0:25
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv6645

Modified Files:
	Node.C 
Log Message:
startup build spanning tree for proxies.


===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1061	Wed Dec 13 06:25:54 2000
   Repository revision:	1.1061	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1057)
	release-2-2-beta-1       	(revision: 1.1057)
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 13, 19100 @ 0:26
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv6704

Modified Files:
	HomePatch.h HomePatch.C 
Log Message:
proxy spanning tree.


===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1031	Wed Dec 13 06:26:55 2000
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1085	Wed Dec 13 06:26:55 2000
   Repository revision:	1.1085	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 13, 19100 @ 13:27
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv6928

Modified Files:
	NamdCentLB.C 
Log Message:
if too many proxies on the node, increase the weight of background load.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.18	Wed Dec 13 19:27:27 2000
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Sunday December 17, 19100 @ 23:28
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv9898

Modified Files:
	ProxyMgr.C 
Log Message:
add ckprint when building proxy spanning tree.


===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1035	Mon Dec 18 05:28:53 2000
   Repository revision:	1.1035	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1023)
	release-2-0              	(revision: 1.1023)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1023)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday December 17, 19100 @ 23:29
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv9921

Modified Files:
	Sync.C 
Log Message:
when proxy spanning tree is used, force proxy sync.


===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.18	Mon Dec 18 05:29:54 2000
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.15)


****************************************
Date:	Sunday December 17, 19100 @ 23:31
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv9944

Modified Files:
	NamdCentLB.C 
Log Message:
change the part that weights the background load if there is too many proxies on a node.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.19	Mon Dec 18 05:31:34 2000
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Monday December 18, 19100 @ 0:50
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv25935

Modified Files:
	ProxyMgr.C 
Log Message:
only print spanning tree info on node 0


===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1036	Mon Dec 18 06:50:41 2000
   Repository revision:	1.1036	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1023)
	release-2-0              	(revision: 1.1023)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1023)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday December 18, 19100 @ 0:54
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv25948

Modified Files:
	ProxyMgr.C 
Log Message:
debug


===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1037	Mon Dec 18 06:54:15 2000
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1023)
	release-2-0              	(revision: 1.1023)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1023)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday December 21, 19100 @ 21:09
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv11208

Modified Files:
	NamdCentLB.C 
Log Message:
CkVector changed to template class CkVec


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.20	Fri Dec 22 03:09:49 2000
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Thursday December 21, 19100 @ 21:13
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2
In directory hanoi:/tmp/cvs-serv11238

Modified Files:
	config 
Log Message:
format config help page.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.19	Fri Dec 22 03:13:42 2000
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Thursday December 21, 19100 @ 21:39
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv11254

Modified Files:
	ComputeMgr.C Node.C 
Log Message:
disable spanning tree building process if the varaibles are set.


===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1042	Fri Dec 22 03:39:17 2000
   Repository revision:	1.1042	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1062	Fri Dec 22 03:39:17 2000
   Repository revision:	1.1062	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1057)
	release-2-2-beta-1       	(revision: 1.1057)
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday December 26, 19100 @ 14:03
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv24388

Modified Files:
	Communicate.C 
Log Message:
remove CmiGrabBuffer since it is already not defined in Charm++.


===================================================================
File: Communicate.C    	Status: Up-to-date

   Working revision:	1.1009	Tue Dec 26 20:03:31 2000
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/Communicate.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1007)
	release-2-2-beta-3       	(revision: 1.1007)
	release-2-2-beta-2       	(revision: 1.1007)
	release-2-2-beta-1       	(revision: 1.1007)
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday January 6, 19101 @ 23:10
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory cancun:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeGlobal.C 
Log Message:
Fixed memory leak in ComputeGlobal::recvResults.


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.25	Sun Jan  7 05:04:08 2001
   Repository revision:	1.25	/home/cvs/namd/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.23)
	release-2-2-beta-1       	(revision: 1.23)
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)


****************************************
Date:	Sunday January 7, 19101 @ 15:04
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory urbana:/Projects/justin/namd2/namd2/src

Modified Files:
	TclCommands.C 
Log Message:
Fixed memory leak in Tcl vecsub command.


===================================================================
File: TclCommands.C    	Status: Up-to-date

   Working revision:	1.10	Sun Jan  7 21:01:22 2001
   Repository revision:	1.10	/home/cvs/namd/cvsroot/namd2/src/TclCommands.C,v

   Existing Tags:
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Monday January 8, 19101 @ 16:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Added Files:
	Linux-i686-Scyld.arch Linux-i686-ScyldCD.arch 
Log Message:
Special versions for Scyld Beowulf.


===================================================================
File: Linux-i686-Scyld.arch	Status: Up-to-date

   Working revision:	1.1	Mon Jan  8 22:03:45 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Scyld.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-ScyldCD.arch	Status: Up-to-date

   Working revision:	1.1	Mon Jan  8 22:03:56 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-ScyldCD.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday January 8, 19101 @ 16:12
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	config 
Log Message:
Changes for Scyld versions.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.20	Mon Jan  8 22:11:36 2001
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Monday January 8, 19101 @ 17:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	config 
Log Message:
Scyld fix.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.21	Mon Jan  8 22:20:40 2001
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Monday January 8, 19101 @ 17:07
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	main.C 
Log Message:
Added Scyld notice.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1041	Mon Jan  8 22:59:37 2001
   Repository revision:	1.1041	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1040)
	release-2-2-beta-3       	(revision: 1.1040)
	release-2-2-beta-2       	(revision: 1.1040)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 9, 19101 @ 2:35
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hamlet:/tmp/cvs-serv765

Modified Files:
	MStream.C 
Log Message:
put() send one more byte than len indicated.


===================================================================
File: MStream.C        	Status: Up-to-date

   Working revision:	1.11	Tue Jan  9 08:35:08 2001
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/MStream.C,v

   Existing Tags:
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Tuesday January 9, 19101 @ 15:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory titania.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Linux-i686-ScyldCD.arch 
Log Message:
Added Scyld notice.


===================================================================
File: Linux-i686-ScyldCD.arch	Status: Up-to-date

   Working revision:	1.2	Mon Jan  8 22:14:22 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-ScyldCD.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday January 10, 19101 @ 13:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv2723

Added Files:
	Tru64-Alpha-MPI-CC.arch 
Log Message:
MPI version for PSC Terascale system.


===================================================================
File: Tru64-Alpha-MPI-CC.arch	Status: Up-to-date

   Working revision:	1.1	Wed Jan 10 19:09:08 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-MPI-CC.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday January 10, 19101 @ 14:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv3281

Modified Files:
	Linux-i686.fftw Linux-i686.tcl 
Log Message:
Changes for POSIC.


===================================================================
File: Linux-i686.fftw  	Status: Up-to-date

   Working revision:	1.4	Wed Jan 10 20:26:08 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.fftw,v

   Existing Tags:
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Linux-i686.tcl   	Status: Up-to-date

   Working revision:	1.4	Wed Jan 10 20:26:08 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.tcl,v

   Existing Tags:
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Wednesday January 10, 19101 @ 14:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv3307

Modified Files:
	Origin2000.tcl 
Log Message:
Added -lm to fix compile error.


===================================================================
File: Origin2000.tcl   	Status: Up-to-date

   Working revision:	1.4	Wed Jan 10 20:26:39 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Origin2000.tcl,v

   Existing Tags:
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Wednesday January 10, 19101 @ 15:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Tru64-Alpha.fftw Tru64-Alpha.tcl 
Log Message:
Fixes for PSC TCSini.


===================================================================
File: Tru64-Alpha.fftw 	Status: Up-to-date

   Working revision:	1.4	Wed Jan 10 21:15:06 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha.fftw,v

   Existing Tags:
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Tru64-Alpha.tcl  	Status: Up-to-date

   Working revision:	1.3	Wed Jan 10 21:14:32 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha.tcl,v

   Existing Tags:
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Wednesday January 17, 19101 @ 16:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Rebalancer.C 
Log Message:
Fixed bias in load balancer against moving self computes.  Now self
computes are considered to always have at least on patch available.
(1 or 2 patches, 0 or 1 proxies, vs previously 0 or 2)


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.32	Wed Jan 17 20:56:38 2001
   Repository revision:	1.32	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)


****************************************
Date:	Friday January 19, 19101 @ 11:31
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	HomePatch.C HomePatch.h Sequencer.C 
Log Message:
Constraint failures now exit smoothly, may print final energies.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1086	Fri Jan 19 17:11:14 2001
   Repository revision:	1.1086	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1032	Fri Jan 19 17:08:17 2001
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1106	Fri Jan 19 17:12:32 2001
   Repository revision:	1.1106	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday January 20, 19101 @ 14:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Linux-i686-Scyld.arch Linux-i686-ScyldCD.arch 
Log Message:
switched to net-linux-scyld port


===================================================================
File: Linux-i686-Scyld.arch	Status: Up-to-date

   Working revision:	1.2	Fri Jan 19 02:33:52 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Scyld.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-ScyldCD.arch	Status: Up-to-date

   Working revision:	1.3	Sat Jan 20 20:56:59 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-ScyldCD.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Saturday January 20, 19101 @ 14:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile 
Log Message:
Changed version to 2.3b1.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1137	Sat Jan 20 20:58:15 2001
   Repository revision:	1.1137	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday January 20, 19101 @ 15:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Linux-i686.tcl 
Log Message:
Added -lm.


===================================================================
File: Linux-i686.tcl   	Status: Up-to-date

   Working revision:	1.5	Sat Jan 20 21:29:57 2001
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.tcl,v

   Existing Tags:
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Saturday January 20, 19101 @ 15:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile 
Log Message:
Version 2.3a1.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1137	Sat Jan 20 21:32:30 2001
   Repository revision:	1.1137	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday January 27, 19101 @ 12:30
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory cancun:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeFreeEnergy.C ComputeFreeEnergy.h ComputeGlobal.C 
	ComputeGlobal.h ComputeGlobalEasy.C ComputeGlobalEasy.h 
	ComputeGlobalMaster.C ComputeGlobalMaster.h ComputeIMD.C 
	ComputeIMD.h ComputeMisc.C ComputeMisc.h ComputeSMD.C 
	ComputeSMD.h ComputeTcl.C ComputeTcl.h 
Log Message:
ComputeGlobalMaster and derivatives now take a ComputeMgr in their constructor,
since that's all they need from ComputeGlobal.  Eliminated friend class
declaration and made constructors public.


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.24	Sat Jan 27 18:18:51 2001
   Repository revision:	1.24	/home/cvs/namd/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.23)
	release-2-2-beta-1       	(revision: 1.23)
	release-2-1              	(revision: 1.21)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.20)
	release-2-1-beta-1       	(revision: 1.18)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.14)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.12)

===================================================================
File: ComputeFreeEnergy.h	Status: Up-to-date

   Working revision:	1.11	Sat Jan 27 18:15:10 2001
   Repository revision:	1.11	/home/cvs/namd/cvsroot/namd2/src/ComputeFreeEnergy.h,v

   Existing Tags:
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.8)

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.26	Sat Jan 27 18:20:46 2001
   Repository revision:	1.26	/home/cvs/namd/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.23)
	release-2-2-beta-1       	(revision: 1.23)
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeGlobal.h  	Status: Up-to-date

   Working revision:	1.7	Sat Jan 27 18:10:24 2001
   Repository revision:	1.7	/home/cvs/namd/cvsroot/namd2/src/ComputeGlobal.h,v

   Existing Tags:
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ComputeGlobalEasy.C	Status: Up-to-date

   Working revision:	1.9	Sat Jan 27 18:12:24 2001
   Repository revision:	1.9	/home/cvs/namd/cvsroot/namd2/src/ComputeGlobalEasy.C,v

   Existing Tags:
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: ComputeGlobalEasy.h	Status: Up-to-date

   Working revision:	1.7	Sat Jan 27 18:11:51 2001
   Repository revision:	1.7	/home/cvs/namd/cvsroot/namd2/src/ComputeGlobalEasy.h,v

   Existing Tags:
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ComputeGlobalMaster.C	Status: Up-to-date

   Working revision:	1.9	Sat Jan 27 18:11:26 2001
   Repository revision:	1.9	/home/cvs/namd/cvsroot/namd2/src/ComputeGlobalMaster.C,v

   Existing Tags:
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeGlobalMaster.h	Status: Up-to-date

   Working revision:	1.8	Sat Jan 27 18:10:57 2001
   Repository revision:	1.8	/home/cvs/namd/cvsroot/namd2/src/ComputeGlobalMaster.h,v

   Existing Tags:
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.14	Sat Jan 27 18:21:36 2001
   Repository revision:	1.14	/home/cvs/namd/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.13)
	release-2-2-beta-2       	(revision: 1.13)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ComputeIMD.h     	Status: Up-to-date

   Working revision:	1.5	Sat Jan 27 18:21:19 2001
   Repository revision:	1.5	/home/cvs/namd/cvsroot/namd2/src/ComputeIMD.h,v

   Existing Tags:
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputeMisc.C    	Status: Up-to-date

   Working revision:	1.4	Sat Jan 27 18:13:01 2001
   Repository revision:	1.4	/home/cvs/namd/cvsroot/namd2/src/ComputeMisc.C,v

   Existing Tags:
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputeMisc.h    	Status: Up-to-date

   Working revision:	1.5	Sat Jan 27 18:12:44 2001
   Repository revision:	1.5	/home/cvs/namd/cvsroot/namd2/src/ComputeMisc.h,v

   Existing Tags:
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.14	Sat Jan 27 18:18:38 2001
   Repository revision:	1.14	/home/cvs/namd/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeSMD.h     	Status: Up-to-date

   Working revision:	1.8	Sat Jan 27 18:16:32 2001
   Repository revision:	1.8	/home/cvs/namd/cvsroot/namd2/src/ComputeSMD.h,v

   Existing Tags:
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.23	Sat Jan 27 18:14:38 2001
   Repository revision:	1.23	/home/cvs/namd/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-2              	(revision: 1.21)
	release-2-2-beta-3       	(revision: 1.21)
	release-2-2-beta-2       	(revision: 1.20)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.17)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.15)
	release-2-1-beta-2       	(revision: 1.14)
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: ComputeTcl.h     	Status: Up-to-date

   Working revision:	1.6	Sat Jan 27 18:14:04 2001
   Repository revision:	1.6	/home/cvs/namd/cvsroot/namd2/src/ComputeTcl.h,v

   Existing Tags:
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Saturday January 27, 19101 @ 19:25
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory cancun:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeFreeEnergy.C ComputeGlobal.C ComputeGlobal.h 
	ComputeGlobalEasy.C ComputeGlobalMaster.C 
	ComputeGlobalMaster.h ComputeGlobalMsgs.C ComputeGlobalMsgs.h 
	ComputeIMD.C ComputeSMD.C ComputeTcl.C 
Log Message:
Added infrastructure for supporting multiple ComputeGlobalMaster instances.
ComputeGlobalMsg objects are tagged and routed to the proper Master.


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.25	Sun Jan 28 00:44:12 2001
   Repository revision:	1.25	/home/cvs/namd/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.23)
	release-2-2-beta-1       	(revision: 1.23)
	release-2-1              	(revision: 1.21)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.20)
	release-2-1-beta-1       	(revision: 1.18)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.14)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.12)

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.27	Sun Jan 28 01:18:44 2001
   Repository revision:	1.27	/home/cvs/namd/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.23)
	release-2-2-beta-1       	(revision: 1.23)
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeGlobal.h  	Status: Up-to-date

   Working revision:	1.8	Sat Jan 27 19:24:54 2001
   Repository revision:	1.8	/home/cvs/namd/cvsroot/namd2/src/ComputeGlobal.h,v

   Existing Tags:
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ComputeGlobalEasy.C	Status: Up-to-date

   Working revision:	1.10	Sun Jan 28 00:43:45 2001
   Repository revision:	1.10	/home/cvs/namd/cvsroot/namd2/src/ComputeGlobalEasy.C,v

   Existing Tags:
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: ComputeGlobalMaster.C	Status: Up-to-date

   Working revision:	1.10	Sun Jan 28 00:40:28 2001
   Repository revision:	1.10	/home/cvs/namd/cvsroot/namd2/src/ComputeGlobalMaster.C,v

   Existing Tags:
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeGlobalMaster.h	Status: Up-to-date

   Working revision:	1.9	Sun Jan 28 00:39:29 2001
   Repository revision:	1.9	/home/cvs/namd/cvsroot/namd2/src/ComputeGlobalMaster.h,v

   Existing Tags:
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeGlobalMsgs.C	Status: Up-to-date

   Working revision:	1.8	Sat Jan 27 19:59:22 2001
   Repository revision:	1.8	/home/cvs/namd/cvsroot/namd2/src/ComputeGlobalMsgs.C,v

   Existing Tags:
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeGlobalMsgs.h	Status: Up-to-date

   Working revision:	1.7	Sat Jan 27 19:58:47 2001
   Repository revision:	1.7	/home/cvs/namd/cvsroot/namd2/src/ComputeGlobalMsgs.h,v

   Existing Tags:
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.15	Sun Jan 28 00:41:37 2001
   Repository revision:	1.15	/home/cvs/namd/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.13)
	release-2-2-beta-2       	(revision: 1.13)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.15	Sun Jan 28 00:42:06 2001
   Repository revision:	1.15	/home/cvs/namd/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.24	Sun Jan 28 00:41:00 2001
   Repository revision:	1.24	/home/cvs/namd/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-2              	(revision: 1.21)
	release-2-2-beta-3       	(revision: 1.21)
	release-2-2-beta-2       	(revision: 1.20)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.17)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.15)
	release-2-1-beta-2       	(revision: 1.14)
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)


****************************************
Date:	Wednesday January 31, 19101 @ 11:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory oberon.ks.uiuc.edu:/var/tmp/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Check for rare rounding condition where K * ( 1 - epsilon ) == K
which was observed with g++ on Intel x86 architecture.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.31	Wed Jan 31 17:24:02 2001
   Repository revision:	1.31	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Wednesday January 31, 19101 @ 14:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	WorkDistrib.C WorkDistrib.ci WorkDistrib.h 
Log Message:
Replaced fixed size message with varsize.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1097	Wed Jan 31 20:01:05 2001
   Repository revision:	1.1097	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1015	Wed Jan 31 19:59:28 2001
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	release-2-2              	(revision: 1.1014)
	release-2-2-beta-3       	(revision: 1.1013)
	release-2-2-beta-2       	(revision: 1.1013)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1024	Wed Jan 31 19:56:03 2001
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1023)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 31, 19101 @ 15:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	HomePatch.C Sequencer.C 
Log Message:
Better error messages when exiting due to instability.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1087	Wed Jan 31 20:54:07 2001
   Repository revision:	1.1087	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1107	Wed Jan 31 20:58:55 2001
   Repository revision:	1.1107	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 31, 19101 @ 15:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Make.depends 
Log Message:
Updated, not many changes.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.74	Wed Jan 31 21:07:09 2001
   Repository revision:	1.74	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Wednesday January 31, 19101 @ 15:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Controller.C 
Log Message:
Warns but allows exclusion misses during minimization.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1135	Wed Jan 31 21:20:54 2001
   Repository revision:	1.1135	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 31, 19101 @ 15:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile 
Log Message:
Version 2.3a2


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1138	Wed Jan 31 21:31:56 2001
   Repository revision:	1.1138	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday January 31, 19101 @ 18:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv15172

Modified Files:
	ParseOptions.C 
Log Message:
Workarounds for braindead pgCC compiler.


===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1017	Thu Feb  1 00:08:11 2001
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1016)
	release-2-2-beta-3       	(revision: 1.1016)
	release-2-2-beta-2       	(revision: 1.1016)
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 5, 19101 @ 17:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	main.C 
Log Message:
Better error checking for host and user determination.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1042	Mon Feb  5 22:51:51 2001
   Repository revision:	1.1042	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-2              	(revision: 1.1040)
	release-2-2-beta-3       	(revision: 1.1040)
	release-2-2-beta-2       	(revision: 1.1040)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 6, 19101 @ 10:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Output.C 
Log Message:
Added "finished" messages for restart files.


===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.39	Tue Feb  6 16:17:05 2001
   Repository revision:	1.39	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-2              	(revision: 1.37)
	release-2-2-beta-3       	(revision: 1.37)
	release-2-2-beta-2       	(revision: 1.35)
	release-2-2-beta-1       	(revision: 1.35)
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)


****************************************
Date:	Friday February 9, 19101 @ 13:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv14728

Added Files:
	Linux-i686-MPI-pgCC.arch 
Log Message:
Added POSIC port.


===================================================================
File: Linux-i686-MPI-pgCC.arch	Status: Up-to-date

   Working revision:	1.1	Fri Feb  9 19:35:38 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-MPI-pgCC.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday February 11, 19101 @ 21:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Made ewaldcof and pi_ewaldcof local.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1060	Mon Feb 12 03:09:23 2001
   Repository revision:	1.1060	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 12, 19101 @ 10:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Adding structure building code to CVS.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.75	Mon Feb 12 16:09:01 2001
   Repository revision:	1.75	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1139	Mon Feb 12 16:07:22 2001
   Repository revision:	1.1139	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 12, 19101 @ 10:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Added Files:
	build.c charmm_file.c charmm_file.h charmm_parse_topo_defs.c 
	charmm_parse_topo_defs.h extract_alias.c extract_alias.h 
	hash.c hash.h hasharray.c hasharray.h memarena.c memarena.h 
	pdb_file.c pdb_file.h pdb_file_extract.c pdb_file_extract.h 
	stringhash.c stringhash.h tokenize.c topo_defs.c topo_defs.h 
	topo_defs_struct.h topo_mol.c topo_mol.h topo_mol_output.c 
	topo_mol_output.h topo_mol_struct.h 
Log Message:
Adding structure building code to CVS.


===================================================================
File: build.c          	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:43:23 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/build.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: charmm_file.c    	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:43:23 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/charmm_file.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: charmm_file.h    	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:45:09 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/charmm_file.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: charmm_parse_topo_defs.c	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:43:23 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/charmm_parse_topo_defs.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: charmm_parse_topo_defs.h	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:45:09 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/charmm_parse_topo_defs.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: extract_alias.c  	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:43:23 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/extract_alias.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: extract_alias.h  	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:45:09 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/extract_alias.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: hash.c           	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:43:23 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/hash.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: hash.h           	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:45:09 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/hash.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: hasharray.c      	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:43:23 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/hasharray.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: hasharray.h      	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:45:09 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/hasharray.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: memarena.c       	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:43:24 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/memarena.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: memarena.h       	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:45:09 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/memarena.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pdb_file.c       	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:43:24 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/pdb_file.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pdb_file.h       	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:45:09 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/pdb_file.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pdb_file_extract.c	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:43:24 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/pdb_file_extract.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pdb_file_extract.h	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:45:09 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/pdb_file_extract.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: stringhash.c     	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:43:24 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/stringhash.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: stringhash.h     	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:45:09 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/stringhash.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: tokenize.c       	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:43:24 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/tokenize.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_defs.c      	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:43:24 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/topo_defs.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_defs.h      	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:45:09 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/topo_defs.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_defs_struct.h	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:45:09 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/topo_defs_struct.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_mol.c       	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:43:24 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/topo_mol.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_mol.h       	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:45:09 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/topo_mol.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_mol_output.c	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:43:24 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/topo_mol_output.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_mol_output.h	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:45:09 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/topo_mol_output.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_mol_struct.h	Status: Up-to-date

   Working revision:	1.1	Mon Feb 12 15:45:09 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/topo_mol_struct.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday February 12, 19101 @ 10:38
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile 
Log Message:
Eliminated awk, now just uses basename in make depends.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1140	Mon Feb 12 16:37:08 2001
   Repository revision:	1.1140	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 13, 19101 @ 21:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Added missing type to const ewaldcof!


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1061	Wed Feb 14 03:38:36 2001
   Repository revision:	1.1061	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 14, 19101 @ 18:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	topo_mol.c 
Log Message:
forgot to change 4 to 3 in several cases


===================================================================
File: topo_mol.c       	Status: Up-to-date

   Working revision:	1.2	Thu Feb 15 00:23:18 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/topo_mol.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday February 15, 19101 @ 10:48
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory cancun:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeSMD.C 
Log Message:
Moved assignment of tag for ConfigMsg from constructor to ::initialize;
otherwise tag hasn't been given a legitimate value yet.


===================================================================
File: ComputeSMD.C     	Status: Up-to-date

   Working revision:	1.16	Thu Feb 15 16:29:55 2001
   Repository revision:	1.16	/home/cvs/namd/cvsroot/namd2/src/ComputeSMD.C,v

   Existing Tags:
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday February 15, 19101 @ 11:41
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2
In directory hanoi:/tmp/cvs-serv19657

Modified Files:
	config 
Log Message:
changed pr -3t to "pr -3 -t" because it was not recorgnized on IBM SP.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.22	Thu Feb 15 17:41:18 2001
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Thursday February 15, 19101 @ 12:07
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv19673

Modified Files:
	Cygwin-i686.arch 
Log Message:
it's crazy that in new cygwin version I need to include path /usr/include/w32api to CXX flags.


===================================================================
File: Cygwin-i686.arch 	Status: Up-to-date

   Working revision:	1.2	Thu Feb 15 18:07:07 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday February 15, 19101 @ 15:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile 
Log Message:
Switched conv-host to charmrun, added charmd to release.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1141	Thu Feb 15 21:22:43 2001
   Repository revision:	1.1141	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 16, 19101 @ 9:12
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	announce.txt notes.txt README.txt 
Log Message:
Working on docs.


===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.13	Thu Feb 15 23:39:16 2001
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.22	Fri Feb 16 15:10:53 2001
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)

===================================================================
File: README.txt       	Status: Up-to-date

   Working revision:	1.10	Thu Feb 15 23:12:24 2001
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/README.txt,v

   Existing Tags:
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.2)


****************************************
Date:	Friday February 16, 19101 @ 16:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile 
Log Message:
Added Tcl to psfgen.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1142	Fri Feb 16 18:45:41 2001
   Repository revision:	1.1142	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 16, 19101 @ 16:07
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	build.c 
Log Message:
Switched psfgen interface to use Tcl.


===================================================================
File: build.c          	Status: Up-to-date

   Working revision:	1.2	Fri Feb 16 22:05:48 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/build.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday February 16, 19101 @ 16:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	build.c 
Log Message:
Removed crap at end.


===================================================================
File: build.c          	Status: Up-to-date

   Working revision:	1.3	Fri Feb 16 22:13:19 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/build.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday February 16, 19101 @ 16:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile 
Log Message:
Added TCLAPPLIB make var.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1143	Fri Feb 16 22:34:50 2001
   Repository revision:	1.1143	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 16, 19101 @ 16:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Solaris-Sparc.tcl 
Log Message:
Added TCLAPPLIB make var.


===================================================================
File: Solaris-Sparc.tcl	Status: Up-to-date

   Working revision:	1.4	Fri Feb 16 22:34:16 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc.tcl,v

   Existing Tags:
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Friday February 16, 19101 @ 16:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Linux-i686.tcl Origin2000.tcl 
Log Message:
Remove -lm (was added to Makefile).


===================================================================
File: Linux-i686.tcl   	Status: Up-to-date

   Working revision:	1.6	Fri Feb 16 22:25:59 2001
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.tcl,v

   Existing Tags:
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Origin2000.tcl   	Status: Up-to-date

   Working revision:	1.5	Fri Feb 16 22:26:04 2001
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Origin2000.tcl,v

   Existing Tags:
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Friday February 16, 19101 @ 16:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	topo_mol.c 
Log Message:
fixed to always return value.


===================================================================
File: topo_mol.c       	Status: Up-to-date

   Working revision:	1.3	Fri Feb 16 22:54:04 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/topo_mol.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Saturday February 17, 19101 @ 13:33
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2
In directory hanoi:/tmp/cvs-serv29236

Modified Files:
	config 
Log Message:
MSVC version config will copy the src instead of symbolic link.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.23	Sat Feb 17 19:33:56 2001
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Monday February 19, 19101 @ 10:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Parameters.h 
Log Message:
Increased MAX_MULTIPLICITY from 4 to 6.


===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.1010	Mon Feb 19 16:48:04 2001
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/Parameters.h,v

   Existing Tags:
	release-2-2              	(revision: 1.1009)
	release-2-2-beta-3       	(revision: 1.1009)
	release-2-2-beta-2       	(revision: 1.1009)
	release-2-2-beta-1       	(revision: 1.1009)
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 19, 19101 @ 11:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile 
Log Message:
Version 2.3a3.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1144	Mon Feb 19 17:10:36 2001
   Repository revision:	1.1144	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 19, 19101 @ 11:37
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv2219

Added Files:
	Cygwin-i686-MSVC.arch Cygwin-i686-MSVC.base 
	Cygwin-i686-MSVC.fftw Cygwin-i686-MSVC.tcl 
Log Message:
Cygwin-i686-MSVC.arch for compiling namd2 using MSVC under cygwin.


===================================================================
File: Cygwin-i686-MSVC.arch	Status: Up-to-date

   Working revision:	1.1	Mon Feb 19 17:37:08 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686-MSVC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Cygwin-i686-MSVC.base	Status: Up-to-date

   Working revision:	1.1	Mon Feb 19 17:37:08 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686-MSVC.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Cygwin-i686-MSVC.fftw	Status: Up-to-date

   Working revision:	1.1	Mon Feb 19 17:37:08 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686-MSVC.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Cygwin-i686-MSVC.tcl	Status: Up-to-date

   Working revision:	1.1	Mon Feb 19 17:37:08 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686-MSVC.tcl,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday February 20, 19101 @ 14:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	build.c 
Log Message:
Remove Tcl_init call.


===================================================================
File: build.c          	Status: Up-to-date

   Working revision:	1.4	Tue Feb 20 20:08:02 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/build.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday February 20, 19101 @ 14:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Make.charm Makefile config 
Log Message:
Fixes to build on Win32 under Cygwin.


===================================================================
File: Make.charm       	Status: Up-to-date

   Working revision:	1.8	Tue Feb 20 20:05:38 2001
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/Make.charm,v

   Existing Tags:
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1145	Tue Feb 20 20:04:32 2001
   Repository revision:	1.1145	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.24	Tue Feb 20 20:04:31 2001
   Repository revision:	1.24	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Tuesday February 20, 19101 @ 14:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Win32-i686-MSVC.arch Win32.base Win32.fftw Win32.tcl 
Log Message:
Fixes to build on Win32 under Cygwin.


===================================================================
File: Win32-i686-MSVC.arch	Status: Up-to-date

   Working revision:	1.6	Tue Feb 20 20:04:32 2001
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Win32-i686-MSVC.arch,v

   Existing Tags:
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)

===================================================================
File: Win32.base       	Status: Up-to-date

   Working revision:	1.2	Tue Feb 20 20:04:32 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Win32.base,v

   Existing Tags:
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)

===================================================================
File: Win32.fftw       	Status: Up-to-date

   Working revision:	1.2	Tue Feb 20 20:04:32 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Win32.fftw,v

   Existing Tags:
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)

===================================================================
File: Win32.tcl        	Status: Up-to-date

   Working revision:	1.3	Tue Feb 20 20:04:32 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Win32.tcl,v

   Existing Tags:
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)


****************************************
Date:	Tuesday February 20, 19101 @ 14:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Make.charm 
Log Message:
Automate builds on Win32.


===================================================================
File: Make.charm       	Status: Up-to-date

   Working revision:	1.9	Tue Feb 20 20:33:41 2001
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/Make.charm,v

   Existing Tags:
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Tuesday February 20, 19101 @ 14:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Win32.base 
Log Message:
Automate builds on Win32.


===================================================================
File: Win32.base       	Status: Up-to-date

   Working revision:	1.3	Tue Feb 20 20:33:10 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Win32.base,v

   Existing Tags:
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)


****************************************
Date:	Tuesday February 20, 19101 @ 15:28
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv7202

Modified Files:
	Cygwin-i686.arch 
Log Message:
move -I as part of CXX


===================================================================
File: Cygwin-i686.arch 	Status: Up-to-date

   Working revision:	1.3	Tue Feb 20 21:28:57 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday February 20, 19101 @ 17:42
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile config 
Log Message:
Convert text files to DOS format.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1146	Tue Feb 20 23:37:13 2001
   Repository revision:	1.1146	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.25	Tue Feb 20 23:37:07 2001
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Tuesday February 20, 19101 @ 18:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	notes.txt 
Log Message:
Remove "known deficiencies" section.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.23	Wed Feb 21 00:05:28 2001
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Tuesday February 20, 19101 @ 18:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Added Files:
	Linux-Alpha-MPI-cxx.arch Linux-Alpha-Scyld-cxx.arch 
	Linux-Alpha-ScyldCD-cxx.arch 
Log Message:
Ports to Scyld on Alpha.


===================================================================
File: Linux-Alpha-MPI-cxx.arch	Status: Up-to-date

   Working revision:	1.1	Thu Feb 15 00:16:58 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha-MPI-cxx.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-Alpha-Scyld-cxx.arch	Status: Up-to-date

   Working revision:	1.1	Thu Feb 15 00:14:46 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha-Scyld-cxx.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-Alpha-ScyldCD-cxx.arch	Status: Up-to-date

   Working revision:	1.1	Thu Feb 15 00:15:32 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha-ScyldCD-cxx.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday February 22, 19101 @ 11:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	notes.txt 
Log Message:
Comment on tcl shared libs.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.24	Thu Feb 22 17:14:45 2001
   Repository revision:	1.24	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Thursday February 22, 19101 @ 18:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	notes.txt 
Log Message:
Improved compile instructions.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.25	Fri Feb 23 00:00:52 2001
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Thursday February 22, 19101 @ 18:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	notes.txt 
Log Message:
Fixed error on ++pathfix.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.26	Fri Feb 23 00:32:53 2001
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Thursday February 22, 19101 @ 18:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	notes.txt 
Log Message:
Minor formatting.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.27	Fri Feb 23 00:47:35 2001
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Thursday February 22, 19101 @ 18:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	Makefile namd_copyright.tex namd_version.tex ug_add.tex 
	ug_avail.tex ug_basic.tex ug_intro.tex ug_runit.tex 
Log Message:
Many updates and cleanups for 2.3.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.17	Wed Feb 21 00:26:00 2001
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: namd_copyright.tex	Status: Up-to-date

   Working revision:	1.9	Wed Feb 21 00:39:11 2001
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/ug/namd_copyright.tex,v

   Existing Tags:
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: namd_version.tex 	Status: Up-to-date

   Working revision:	1.11	Wed Feb 21 00:26:09 2001
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/ug/namd_version.tex,v

   Existing Tags:
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.28	Fri Feb 23 00:05:23 2001
   Repository revision:	1.28	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_avail.tex     	Status: Up-to-date

   Working revision:	1.6	Fri Feb 23 00:52:00 2001
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/ug/ug_avail.tex,v

   Existing Tags:
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.14	Fri Feb 23 00:05:55 2001
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.11)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.14	Fri Feb 23 00:52:00 2001
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ug_runit.tex     	Status: Up-to-date

   Working revision:	1.5	Fri Feb 23 00:52:00 2001
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/ug/ug_runit.tex,v

   Existing Tags:
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday February 22, 19101 @ 20:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	Makefile ug.tex ug_intro.tex 
Added Files:
	ug_psfgen.tex 
Log Message:
Added documentation on psfgen.


===================================================================
File: ug_psfgen.tex    	Status: Up-to-date

   Working revision:	1.1	Fri Feb 23 02:03:04 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/ug/ug_psfgen.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.18	Fri Feb 23 01:12:21 2001
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ug.tex           	Status: Up-to-date

   Working revision:	1.6	Fri Feb 23 02:03:04 2001
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/ug/ug.tex,v

   Existing Tags:
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.15	Fri Feb 23 02:03:04 2001
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Thursday February 22, 19101 @ 20:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile 
Log Message:
Version 2.3b1


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1147	Thu Feb 22 22:26:24 2001
   Repository revision:	1.1147	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 22, 19101 @ 20:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	announce.txt 
Log Message:
Fixed date of announcement.


===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.14	Fri Feb 23 02:07:45 2001
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Thursday February 22, 19101 @ 20:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	ug_psfgen.tex 
Log Message:
Added one more division.


===================================================================
File: ug_psfgen.tex    	Status: Up-to-date

   Working revision:	1.2	Fri Feb 23 02:13:51 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/ug/ug_psfgen.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday February 25, 19101 @ 14:21
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory urbana:/Projects/justin/namd2/namd2/src

Modified Files:
	topo_mol_output.c 
Log Message:
Made generated psf files compatible with X-PLOR.


===================================================================
File: topo_mol_output.c	Status: Up-to-date

   Working revision:	1.2	Sun Feb 25 19:51:13 2001
   Repository revision:	1.2	/home/cvs/namd/cvsroot/namd2/src/topo_mol_output.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday February 25, 19101 @ 14:33
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory urbana:/Projects/justin/namd2/namd2/src

Modified Files:
	topo_mol_output.c 
Log Message:
Made segid left-justified for VMD and X-PLOR compatibility.


===================================================================
File: topo_mol_output.c	Status: Up-to-date

   Working revision:	1.3	Sun Feb 25 20:31:05 2001
   Repository revision:	1.3	/home/cvs/namd/cvsroot/namd2/src/topo_mol_output.c,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday February 27, 19101 @ 14:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	structures.h 
Log Message:
Latent bug in Exlucions::operator<;


===================================================================
File: structures.h     	Status: Up-to-date

   Working revision:	1.1008	Tue Feb 27 19:39:57 2001
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/structures.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1007)
	release-2-2              	(revision: 1.1007)
	release-2-2-beta-3       	(revision: 1.1007)
	release-2-2-beta-2       	(revision: 1.1007)
	release-2-2-beta-1       	(revision: 1.1007)
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 27, 19101 @ 14:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Fixed bug: explicit exclusions now ensure atom1 < atom2.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1054	Tue Feb 27 20:15:15 2001
   Repository revision:	1.1054	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 28, 19101 @ 11:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	ug_psfgen.tex 
Log Message:
Fixed typo.


===================================================================
File: ug_psfgen.tex    	Status: Up-to-date

   Working revision:	1.3	Wed Feb 28 17:14:11 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/ug/ug_psfgen.tex,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.2)


****************************************
Date:	Thursday March 1, 19101 @ 11:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added external electric field.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.76	Thu Mar  1 16:29:10 2001
   Repository revision:	1.76	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1148	Thu Mar  1 16:28:29 2001
   Repository revision:	1.1148	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 1, 19101 @ 11:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeMap.h ComputeMgr.C ScriptTcl.C SimParameters.C 
	WorkDistrib.C 
Added Files:
	ComputeEField.C ComputeEField.h 
Log Message:
Added external electric field.


===================================================================
File: ComputeEField.C  	Status: Up-to-date

   Working revision:	1.1	Thu Mar  1 16:21:21 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeEField.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeEField.h  	Status: Up-to-date

   Working revision:	1.1	Thu Mar  1 16:05:37 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeEField.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1023	Thu Mar  1 16:25:50 2001
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1043	Thu Mar  1 16:25:20 2001
   Repository revision:	1.1043	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.27	Thu Mar  1 15:46:40 2001
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1119	Thu Mar  1 15:44:48 2001
   Repository revision:	1.1119	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1098	Thu Mar  1 16:26:26 2001
   Repository revision:	1.1098	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 1, 19101 @ 11:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Added external electric field.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.29	Thu Mar  1 17:14:11 2001
   Repository revision:	1.29	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Thursday March 1, 19101 @ 12:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ScriptTcl.C 
Log Message:
Alphas don't have snprintf().


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.28	Thu Mar  1 18:34:49 2001
   Repository revision:	1.28	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Saturday March 3, 19101 @ 12:10
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2
In directory hanoi:/tmp/cvs-serv9695

Modified Files:
	Make.depends Makefile 
Log Message:
add load balancing strategy "rob" as in SimParameters, which is a recursion of bisection algorithm to partition the computes.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.77	Sat Mar  3 18:10:32 2001
   Repository revision:	1.77	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1149	Sat Mar  3 18:10:32 2001
   Repository revision:	1.1149	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday March 3, 19101 @ 12:10
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv9695/src

Modified Files:
	NamdCentLB.C NamdCentLB.h SimParameters.C SimParameters.h 
Added Files:
	AlgRecBisection.h AlgRecBisection.C 
Log Message:
add load balancing strategy "rob" as in SimParameters, which is a recursion of bisection algorithm to partition the computes.


===================================================================
File: AlgRecBisection.h	Status: Up-to-date

   Working revision:	1.1	Sat Mar  3 18:10:32 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/AlgRecBisection.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: AlgRecBisection.C	Status: Up-to-date

   Working revision:	1.1	Sat Mar  3 18:10:32 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/AlgRecBisection.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.21	Sat Mar  3 18:10:32 2001
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)

===================================================================
File: NamdCentLB.h     	Status: Up-to-date

   Working revision:	1.4	Sat Mar  3 18:10:32 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1120	Sat Mar  3 18:10:32 2001
   Repository revision:	1.1120	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1062	Sat Mar  3 18:10:32 2001
   Repository revision:	1.1062	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 5, 19101 @ 1:36
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv1213

Modified Files:
	AlgRecBisection.C AlgRecBisection.h AlgSeven.C 
Log Message:
AlgRecBisection.C rewrite the quicksort by sorting x, and y as secondary, and then z.


===================================================================
File: AlgRecBisection.C	Status: Up-to-date

   Working revision:	1.2	Mon Mar  5 07:36:42 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/AlgRecBisection.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: AlgRecBisection.h	Status: Up-to-date

   Working revision:	1.2	Mon Mar  5 07:36:42 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/AlgRecBisection.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.25	Mon Mar  5 07:36:42 2001
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)


****************************************
Date:	Monday March 5, 19101 @ 8:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Linux-i686-MPI-pgCC.arch 
Log Message:
Switched to mpi-linux-vmi-pgcc version of Charm.


===================================================================
File: Linux-i686-MPI-pgCC.arch	Status: Up-to-date

   Working revision:	1.2	Mon Mar  5 14:50:08 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-MPI-pgCC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Monday March 5, 19101 @ 14:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedUtil.C LJTable.C LJTable.h ProcessorPrivate.C 
	ProcessorPrivate.h 
Log Message:
LJTable is no longer singleton.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1037	Mon Mar  5 16:04:54 2001
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.1013	Mon Mar  5 15:56:19 2001
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/LJTable.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1012)
	release-2-2              	(revision: 1.1012)
	release-2-2-beta-3       	(revision: 1.1012)
	release-2-2-beta-2       	(revision: 1.1012)
	release-2-2-beta-1       	(revision: 1.1012)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.h        	Status: Up-to-date

   Working revision:	1.1007	Mon Mar  5 16:54:16 2001
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/LJTable.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1006)
	release-2-2              	(revision: 1.1006)
	release-2-2-beta-3       	(revision: 1.1006)
	release-2-2-beta-2       	(revision: 1.1006)
	release-2-2-beta-1       	(revision: 1.1006)
	release-2-1              	(revision: 1.1004)
	release-2-1-beta-4       	(revision: 1.1004)
	release-2-1-beta-3       	(revision: 1.1004)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProcessorPrivate.C	Status: Up-to-date

   Working revision:	1.4	Mon Mar  5 15:55:50 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ProcessorPrivate.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.2)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ProcessorPrivate.h	Status: Up-to-date

   Working revision:	1.5	Mon Mar  5 15:55:36 2001
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ProcessorPrivate.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Monday March 5, 19101 @ 16:16
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2
In directory urbana:/Projects/justin/namd2/namd2

Modified Files:
	Make.depends 
Log Message:
Added psfgen.h


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.78	Mon Mar  5 22:15:52 2001
   Repository revision:	1.78	/home/cvs/namd/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Monday March 5, 19101 @ 16:18
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory urbana:/Projects/justin/namd2/namd2/src

Modified Files:
	build.c 
Added Files:
	psfgen.h 
Log Message:
Moved global variables in psfgen to a struct that gets passed to the various
Tcl commands via the ClientData parameter.  This struct is also associated
with the Tcl interpreter object so that extension writers can take advantage
of the psfgen data structures. 


===================================================================
File: psfgen.h         	Status: Up-to-date

   Working revision:	1.1	Mon Mar  5 22:15:20 2001
   Repository revision:	1.1	/home/cvs/namd/cvsroot/namd2/src/psfgen.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: build.c          	Status: Up-to-date

   Working revision:	1.5	Mon Mar  5 22:04:01 2001
   Repository revision:	1.5	/home/cvs/namd/cvsroot/namd2/src/build.c,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.4)


****************************************
Date:	Monday March 5, 19101 @ 19:01
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv20824

Modified Files:
	AlgRecBisection.C AlgSeven.C Rebalancer.C Rebalancer.h 
	RefineOnly.C 
Log Message:
merge the binary refinement used in RefineOnly, AlgSeven and AlgRecBisection as a function multirefine() and moved to Rebalancer.C.


===================================================================
File: AlgRecBisection.C	Status: Up-to-date

   Working revision:	1.3	Tue Mar  6 01:01:35 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/AlgRecBisection.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.26	Tue Mar  6 01:01:35 2001
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.33	Tue Mar  6 01:01:35 2001
   Repository revision:	1.33	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: Rebalancer.h     	Status: Up-to-date

   Working revision:	1.10	Tue Mar  6 01:01:35 2001
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/Rebalancer.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: RefineOnly.C     	Status: Up-to-date

   Working revision:	1.12	Tue Mar  6 01:01:35 2001
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/RefineOnly.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)


****************************************
Date:	Monday March 5, 19101 @ 19:24
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv20952

Modified Files:
	AlgRecBisection.C 
Log Message:
T3E CC don't like I define i in for loop.


===================================================================
File: AlgRecBisection.C	Status: Up-to-date

   Working revision:	1.4	Tue Mar  6 01:24:52 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/AlgRecBisection.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday March 5, 19101 @ 20:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	topo_mol.c 
Log Message:
Added one improved error message.


===================================================================
File: topo_mol.c       	Status: Up-to-date

   Working revision:	1.4	Tue Mar  6 02:09:47 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/topo_mol.c,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.3)


****************************************
Date:	Wednesday March 7, 19101 @ 12:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h 
Log Message:
Use interpolation tables for Coulomb (electrostatic) calculation.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1062	Wed Mar  7 00:19:51 2001
   Repository revision:	1.1062	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1038	Wed Mar  7 17:24:43 2001
   Repository revision:	1.1038	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1028	Tue Mar  6 17:26:20 2001
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 7, 19101 @ 13:27
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	topo_mol_output.c 
Log Message:
Fixed typo in psf output format string.


===================================================================
File: topo_mol_output.c	Status: Up-to-date

   Working revision:	1.4	Wed Mar  7 19:26:28 2001
   Repository revision:	1.4	/home/cvs/namd/cvsroot/namd2/src/topo_mol_output.c,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Wednesday March 7, 19101 @ 16:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedUtil.C 
Log Message:
abs() -> fabs()


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1039	Wed Mar  7 22:23:03 2001
   Repository revision:	1.1039	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 7, 19101 @ 16:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedUtil.C 
Log Message:
Avoid aliasing.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1040	Wed Mar  7 22:44:24 2001
   Repository revision:	1.1040	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 8, 19101 @ 10:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeMap.h PatchMap.h WorkDistrib.C WorkDistrib.ci 
	WorkDistrib.h 
Log Message:
Removed broadcast of maps.  Now passed down in sequence.


===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1024	Thu Mar  8 16:18:50 2001
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1019	Thu Mar  8 16:18:32 2001
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1018)
	release-2-2              	(revision: 1.1018)
	release-2-2-beta-3       	(revision: 1.1018)
	release-2-2-beta-2       	(revision: 1.1018)
	release-2-2-beta-1       	(revision: 1.1018)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1016)
	release-2-1-beta-1       	(revision: 1.1014)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1099	Thu Mar  8 16:22:50 2001
   Repository revision:	1.1099	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1016	Thu Mar  8 16:12:41 2001
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1015)
	release-2-2              	(revision: 1.1014)
	release-2-2-beta-3       	(revision: 1.1013)
	release-2-2-beta-2       	(revision: 1.1013)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1025	Thu Mar  8 16:12:35 2001
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1023)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 8, 19101 @ 18:09
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv7315

Modified Files:
	Cygwin-i686-MSVC.arch 
Log Message:
move -DWIN32 -D_AIX to CXX instead of CXXOPTIONS, so config debug mode won't overwrite it.


===================================================================
File: Cygwin-i686-MSVC.arch	Status: Up-to-date

   Working revision:	1.2	Fri Mar  9 00:09:36 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686-MSVC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Friday March 9, 19101 @ 13:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Controller.C 
Log Message:
Display timing for minimization.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1136	Thu Mar  8 17:08:46 2001
   Repository revision:	1.1136	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 9, 19101 @ 13:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	build.c charmm_parse_topo_defs.c topo_defs.c topo_defs.h 
	topo_defs_struct.h topo_mol.c topo_mol_output.c 
	topo_mol_output.h topo_mol_struct.h 
Log Message:
Added optional charmm format to psfgen writepsf command.


===================================================================
File: build.c          	Status: Up-to-date

   Working revision:	1.6	Fri Mar  9 19:40:25 2001
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/build.c,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.4)

===================================================================
File: charmm_parse_topo_defs.c	Status: Up-to-date

   Working revision:	1.2	Fri Mar  9 19:11:55 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/charmm_parse_topo_defs.c,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: topo_defs.c      	Status: Up-to-date

   Working revision:	1.2	Fri Mar  9 19:11:29 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/topo_defs.c,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: topo_defs.h      	Status: Up-to-date

   Working revision:	1.2	Fri Mar  9 19:11:10 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/topo_defs.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: topo_defs_struct.h	Status: Up-to-date

   Working revision:	1.2	Fri Mar  9 19:10:08 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/topo_defs_struct.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: topo_mol.c       	Status: Up-to-date

   Working revision:	1.5	Fri Mar  9 19:19:38 2001
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/topo_mol.c,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.3)

===================================================================
File: topo_mol_output.c	Status: Up-to-date

   Working revision:	1.5	Fri Mar  9 19:41:01 2001
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/topo_mol_output.c,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: topo_mol_output.h	Status: Up-to-date

   Working revision:	1.2	Fri Mar  9 19:31:19 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/topo_mol_output.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: topo_mol_struct.h	Status: Up-to-date

   Working revision:	1.2	Fri Mar  9 19:21:31 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/topo_mol_struct.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Monday March 12, 19101 @ 14:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Now handles third bond in H-O-H gracefully.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1055	Mon Mar 12 20:18:05 2001
   Repository revision:	1.1055	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 13, 19101 @ 17:34
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv8814

Modified Files:
	AlgRecBisection.C 
Log Message:
added mapping from partitions to processors.


===================================================================
File: AlgRecBisection.C	Status: Up-to-date

   Working revision:	1.5	Tue Mar 13 23:34:53 2001
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/AlgRecBisection.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday March 14, 19101 @ 23:36
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv11420

Modified Files:
	AlgRecBisection.h 
Log Message:
add mapPartitionsToNodes() prototype (forgot last time)


===================================================================
File: AlgRecBisection.h	Status: Up-to-date

   Working revision:	1.3	Thu Mar 15 05:36:08 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/AlgRecBisection.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday March 14, 19101 @ 23:39
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv11515

Modified Files:
	Rebalancer.h Rebalancer.C 
Log Message:
added printSummary() to print Load balancing statitics.


===================================================================
File: Rebalancer.h     	Status: Up-to-date

   Working revision:	1.11	Thu Mar 15 05:39:10 2001
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/Rebalancer.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.34	Thu Mar 15 05:39:10 2001
   Repository revision:	1.34	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)


****************************************
Date:	Thursday March 15, 19101 @ 16:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Binary tree to distribute maps.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1100	Thu Mar 15 22:45:43 2001
   Repository revision:	1.1100	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 15, 19101 @ 17:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Fixed atoms don't get rescaled during constant pressure.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1108	Thu Mar 15 23:47:36 2001
   Repository revision:	1.1108	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday March 17, 19101 @ 1:52
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory urbana:/Projects/justin/namd2/namd2/src

Modified Files:
	build.c 
Log Message:
Fixed cut 'n paste typo which resulted in incorrect processing of "auto" command
in psfgen scripts.


===================================================================
File: build.c          	Status: Up-to-date

   Working revision:	1.7	Sat Mar 17 07:46:14 2001
   Repository revision:	1.7	/home/cvs/namd/cvsroot/namd2/src/build.c,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.4)


****************************************
Date:	Sunday March 18, 19101 @ 23:47
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2
In directory hanoi:/tmp/cvs-serv518

Modified Files:
	Makefile 
Log Message:
for namd2.exe under NT, changed obj/*.o for namd2.exe action in Makefile to  $(OBJS), because re-compilation will include *.o from psfgen and duplicate main in mainfunc and build.o. 


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1150	Mon Mar 19 05:47:25 2001
   Repository revision:	1.1150	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 19, 19101 @ 11:14
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv1432

Modified Files:
	ResizeArrayRaw.h 
Log Message:
manipulating pointer is quite dangerous, especially on IA64. It is illegal to casting pointer to long, because I found the pointer is actually 16 bytes long although it claimed to be 8 bytes. Actually I don't think it is necessary to make it 32 bits aligned at all.


===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.12	Mon Mar 19 17:14:00 2001
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Monday March 19, 19101 @ 11:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputePme.C ComputePmeMgr.ci Node.C 
Log Message:
Moved PME FFTW initialization to its own startup phase.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.32	Mon Mar 19 17:29:07 2001
   Repository revision:	1.32	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePmeMgr.ci 	Status: Up-to-date

   Working revision:	1.5	Mon Mar 19 17:27:40 2001
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputePmeMgr.ci,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1063	Mon Mar 19 17:29:57 2001
   Repository revision:	1.1063	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1062)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1057)
	release-2-2-beta-1       	(revision: 1.1057)
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 19, 19101 @ 13:29
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv3356

Modified Files:
	ResizeArrayRaw.h 
Log Message:
using the alternative method to adjust alignment instead.


===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.13	Mon Mar 19 19:29:52 2001
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Monday March 19, 19101 @ 15:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Controller.C 
Log Message:
Adjust benchmark times for load balancing.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1137	Mon Mar 19 20:55:08 2001
   Repository revision:	1.1137	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 20, 19101 @ 11:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
eliminated redundant atomvdwtype lookup


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1063	Tue Mar 20 15:10:28 2001
   Repository revision:	1.1063	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 21, 19101 @ 11:08
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv4067

Modified Files:
	ComputeNonbondedUtil.C ResizeArrayRaw.h ccsinterface.C 
	dcdlib.C 
Log Message:
add #define _IA64 to comment out the conflicting prototype definition.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1041	Wed Mar 21 17:08:04 2001
   Repository revision:	1.1041	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.14	Wed Mar 21 17:08:04 2001
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ccsinterface.C   	Status: Up-to-date

   Working revision:	1.11	Wed Mar 21 17:08:04 2001
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ccsinterface.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.10)
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.17	Wed Mar 21 17:08:04 2001
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday March 22, 19101 @ 11:42
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2
In directory urbana:/Projects/justin/namd2/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added psf_file and psf_file_extract.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.79	Sat Mar 17 18:17:44 2001
   Repository revision:	1.79	/home/cvs/namd/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1151	Thu Mar 22 17:41:18 2001
   Repository revision:	1.1151	/home/cvs/namd/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 22, 19101 @ 11:42
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory urbana:/Projects/justin/namd2/namd2/src

Modified Files:
	build.c 
Added Files:
	psf_file.c psf_file.h psf_file_extract.c psf_file_extract.h 
Log Message:
Added readpsf command for reading x-plor format psf files.


===================================================================
File: psf_file.c       	Status: Up-to-date

   Working revision:	1.1	Sun Mar 18 15:37:09 2001
   Repository revision:	1.1	/home/cvs/namd/cvsroot/namd2/src/psf_file.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: psf_file.h       	Status: Up-to-date

   Working revision:	1.1	Sun Mar 18 15:36:02 2001
   Repository revision:	1.1	/home/cvs/namd/cvsroot/namd2/src/psf_file.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: psf_file_extract.c	Status: Up-to-date

   Working revision:	1.1	Sun Mar 18 15:39:21 2001
   Repository revision:	1.1	/home/cvs/namd/cvsroot/namd2/src/psf_file_extract.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: psf_file_extract.h	Status: Up-to-date

   Working revision:	1.1	Sat Mar 17 17:42:08 2001
   Repository revision:	1.1	/home/cvs/namd/cvsroot/namd2/src/psf_file_extract.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: build.c          	Status: Up-to-date

   Working revision:	1.8	Sun Mar 18 05:19:41 2001
   Repository revision:	1.8	/home/cvs/namd/cvsroot/namd2/src/build.c,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.4)


****************************************
Date:	Thursday March 22, 19101 @ 11:42
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory urbana:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_psfgen.tex 
Log Message:
Added readpsf command for reading x-plor format psf files.


===================================================================
File: ug_psfgen.tex    	Status: Up-to-date

   Working revision:	1.4	Thu Mar 22 17:42:31 2001
   Repository revision:	1.4	/home/cvs/namd/cvsroot/namd2/ug/ug_psfgen.tex,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.2)


****************************************
Date:	Thursday March 22, 19101 @ 13:33
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory cancun:/Projects/justin/namd2/namd2/src

Modified Files:
	build.c pdb_file_extract.c 
Log Message:
The psfgen command coordpb now reads all atoms in the given pdb file if no
segid argument is given, and uses the segid in the pdb file to assign pdb
records to atoms in the molecular structure.


===================================================================
File: build.c          	Status: Up-to-date

   Working revision:	1.9	Thu Mar 22 19:11:50 2001
   Repository revision:	1.9	/home/cvs/namd/cvsroot/namd2/src/build.c,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.4)

===================================================================
File: pdb_file_extract.c	Status: Up-to-date

   Working revision:	1.2	Thu Mar 22 19:06:52 2001
   Repository revision:	1.2	/home/cvs/namd/cvsroot/namd2/src/pdb_file_extract.c,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Thursday March 22, 19101 @ 17:59
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv7965

Modified Files:
	NamdOneTools.C SimParameters.C 
Log Message:
two more places using _IA64 to mask out the confliciting prototype declarations.


===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.26	Thu Mar 22 23:59:43 2001
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.25)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.23)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.16)
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1121	Thu Mar 22 23:59:43 2001
   Repository revision:	1.1121	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 23, 19101 @ 13:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	LJTable.C LJTable.h 
Log Message:
Cache-aligned table and removed exclcut2 element.


===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.1014	Wed Mar 21 16:29:13 2001
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/LJTable.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1012)
	release-2-2              	(revision: 1.1012)
	release-2-2-beta-3       	(revision: 1.1012)
	release-2-2-beta-2       	(revision: 1.1012)
	release-2-2-beta-1       	(revision: 1.1012)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.h        	Status: Up-to-date

   Working revision:	1.1008	Wed Mar 21 16:15:09 2001
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/LJTable.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1006)
	release-2-2              	(revision: 1.1006)
	release-2-2-beta-3       	(revision: 1.1006)
	release-2-2-beta-2       	(revision: 1.1006)
	release-2-2-beta-1       	(revision: 1.1006)
	release-2-1              	(revision: 1.1004)
	release-2-1-beta-4       	(revision: 1.1004)
	release-2-1-beta-3       	(revision: 1.1004)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 23, 19101 @ 13:53
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
Limited to 4 atoms per nonbonded group for ComputeNonbondedBase.h.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1088	Fri Mar 23 19:51:50 2001
   Repository revision:	1.1088	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 23, 19101 @ 14:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Removed inner loops from group-based distance check.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1064	Fri Mar 23 20:13:48 2001
   Repository revision:	1.1064	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 23, 19101 @ 15:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Removed several branches from inner loop.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1065	Fri Mar 23 20:53:14 2001
   Repository revision:	1.1065	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 23, 19101 @ 16:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Split cutoff test into second loop, now pipelines if assumed no aliasing.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1066	Fri Mar 23 21:51:44 2001
   Repository revision:	1.1066	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 27, 19101 @ 8:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Added checks for abnormally small PMEGridSize[XYZ].


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1122	Tue Mar 27 14:12:47 2001
   Repository revision:	1.1122	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 28, 19101 @ 13:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Controller.C 
Log Message:
Slight fix to exclusion checksum tests.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1138	Wed Mar 28 18:59:03 2001
   Repository revision:	1.1138	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 28, 19101 @ 14:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	namd_version.tex 
Log Message:
Added Gengbin as author.


===================================================================
File: namd_version.tex 	Status: Up-to-date

   Working revision:	1.12	Wed Mar 28 20:11:02 2001
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/ug/namd_version.tex,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Wednesday March 28, 19101 @ 18:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv28675

Modified Files:
	Make.charm Makefile 
Log Message:
Changes to use cygwin make rather than nmake on Win32.


===================================================================
File: Make.charm       	Status: Up-to-date

   Working revision:	1.10	Thu Mar 29 00:48:14 2001
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/Make.charm,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1152	Thu Mar 29 00:48:14 2001
   Repository revision:	1.1152	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 28, 19101 @ 18:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv28675/arch

Modified Files:
	Win32-i686-MSVC.arch Win32.base Win32.fftw Win32.tcl 
Log Message:
Changes to use cygwin make rather than nmake on Win32.


===================================================================
File: Win32-i686-MSVC.arch	Status: Up-to-date

   Working revision:	1.7	Thu Mar 29 00:48:14 2001
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Win32-i686-MSVC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)

===================================================================
File: Win32.base       	Status: Up-to-date

   Working revision:	1.4	Thu Mar 29 00:48:14 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Win32.base,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)

===================================================================
File: Win32.fftw       	Status: Up-to-date

   Working revision:	1.3	Thu Mar 29 00:48:14 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Win32.fftw,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)

===================================================================
File: Win32.tcl        	Status: Up-to-date

   Working revision:	1.4	Thu Mar 29 00:48:14 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Win32.tcl,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday March 29, 19101 @ 17:23
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory galatea.ks.uiuc.edu:/tmp_mnt/Projects/justin/namd2/namd2/src

Modified Files:
	IMDOutput.C IMDOutput.h 
Log Message:
Fixed IMD so it works on the T3E, and any other platform where 
sizeof(FloatVector) != 3*sizeof(float).


===================================================================
File: IMDOutput.C      	Status: Up-to-date

   Working revision:	1.11	Thu Mar 29 23:20:39 2001
   Repository revision:	1.11	/home/cvs/namd/cvsroot/namd2/src/IMDOutput.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.10)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)

===================================================================
File: IMDOutput.h      	Status: Up-to-date

   Working revision:	1.9	Thu Mar 29 23:20:45 2001
   Repository revision:	1.9	/home/cvs/namd/cvsroot/namd2/src/IMDOutput.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Thursday March 29, 19101 @ 20:59
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Added Files:
	Darwin-PPC-c++.arch Darwin-PPC.base Darwin-PPC.fftw 
	Darwin-PPC.tcl 
Log Message:
Ported to Darwin (Mac OS X BSD layer).


===================================================================
File: Darwin-PPC-c++.arch	Status: Up-to-date

   Working revision:	1.1	Fri Mar 30 02:04:49 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Darwin-PPC-c++.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Darwin-PPC.base  	Status: Up-to-date

   Working revision:	1.1	Thu Mar 29 20:46:37 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Darwin-PPC.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Darwin-PPC.fftw  	Status: Up-to-date

   Working revision:	1.1	Thu Mar 29 20:53:00 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Darwin-PPC.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Darwin-PPC.tcl   	Status: Up-to-date

   Working revision:	1.1	Thu Mar 29 20:53:18 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Darwin-PPC.tcl,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday March 29, 19101 @ 20:59
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	dcdlib.C TclCommands.C 
Log Message:
Ported to Darwin (Mac OS X BSD layer).


===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.18	Thu Mar 29 21:19:26 2001
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)

===================================================================
File: TclCommands.C    	Status: Up-to-date

   Working revision:	1.11	Thu Mar 29 21:19:12 2001
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/TclCommands.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.10)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Friday March 30, 19101 @ 12:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Fixed minBabyStep default.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.30	Fri Mar 30 18:46:26 2001
   Repository revision:	1.30	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Saturday March 31, 19101 @ 16:36
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv21474

Modified Files:
	Darwin-PPC-c++.arch 
Log Message:
net-darwin => net-ppc-darwin(darwin can be installed on intel pc soon.)


===================================================================
File: Darwin-PPC-c++.arch	Status: Up-to-date

   Working revision:	1.2	Sat Mar 31 22:36:15 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Darwin-PPC-c++.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday April 3, 19101 @ 11:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
During startup, forward maps before processing message locally.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1101	Tue Apr  3 16:12:50 2001
   Repository revision:	1.1101	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 5, 19101 @ 19:46
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeTcl.C ComputeTcl.h 
Log Message:
The loadcoords, loadmasses, and addforce Tcl commands now use the object-based
Tcl API for greater efficiency. 


===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.25	Sat Mar 31 00:34:50 2001
   Repository revision:	1.25	/home/cvs/namd/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.21)
	release-2-2-beta-3       	(revision: 1.21)
	release-2-2-beta-2       	(revision: 1.20)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.17)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.15)
	release-2-1-beta-2       	(revision: 1.14)
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: ComputeTcl.h     	Status: Up-to-date

   Working revision:	1.7	Fri Mar 30 23:20:29 2001
   Repository revision:	1.7	/home/cvs/namd/cvsroot/namd2/src/ComputeTcl.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Saturday April 7, 19101 @ 16:21
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv21848

Added Files:
	Linux-ia64-g++.arch Linux-ia64.base Linux-ia64.fftw 
	Linux-ia64.tcl 
Log Message:
add port to Linux IA64.


===================================================================
File: Linux-ia64-g++.arch	Status: Up-to-date

   Working revision:	1.1	Sat Apr  7 21:21:47 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-g++.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-ia64.base  	Status: Up-to-date

   Working revision:	1.1	Sat Apr  7 21:21:47 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-ia64.fftw  	Status: Up-to-date

   Working revision:	1.1	Sat Apr  7 21:21:47 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-ia64.tcl   	Status: Up-to-date

   Working revision:	1.1	Sat Apr  7 21:21:47 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64.tcl,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Saturday April 7, 19101 @ 16:58
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv21962

Modified Files:
	Linux-ia64-g++.arch 
Log Message:
changed from -O3 to -O1.


===================================================================
File: Linux-ia64-g++.arch	Status: Up-to-date

   Working revision:	1.2	Sat Apr  7 21:58:12 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-g++.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday April 8, 19101 @ 20:24
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv24417

Modified Files:
	Linux-ia64-g++.arch 
Log Message:
added tons of hand tuned optimization compiler flags.


===================================================================
File: Linux-ia64-g++.arch	Status: Up-to-date

   Working revision:	1.3	Mon Apr  9 01:24:36 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-g++.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday April 10, 19101 @ 2:22
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv13031

Modified Files:
	InfoStream.h 
Log Message:
#include <iostream.h>, new gcc compiler on IA64 need this.


===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1010	Tue Apr 10 07:22:10 2001
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/InfoStream.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1009)
	release-2-2              	(revision: 1.1008)
	release-2-2-beta-3       	(revision: 1.1008)
	release-2-2-beta-2       	(revision: 1.1008)
	release-2-2-beta-1       	(revision: 1.1008)
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 11, 19101 @ 0:09
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv11956

Modified Files:
	ComputePme.C ComputePmeMgr.ci 
Log Message:
update ComputePme.C ComputePmeMgr.ci to modern Charm++ syntax:
in ComputePmeMgr.ci, use new varsize message syntax and remove PmeNullmsg;
in ComputePme.C, updated to new syntax of creating a varsize message.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.33	Wed Apr 11 05:09:57 2001
   Repository revision:	1.33	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePmeMgr.ci 	Status: Up-to-date

   Working revision:	1.6	Wed Apr 11 05:09:57 2001
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputePmeMgr.ci,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)


****************************************
Date:	Wednesday April 11, 19101 @ 19:11
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory urbana:/Projects/justin/namd2/namd2/src

Modified Files:
	pdb_file_extract.c 
Log Message:
Fixed error message to use segid from pdb file if no segid is given; fixes bug
that caused psfgen to crash if coordpdb failed when no segid was given. 


===================================================================
File: pdb_file_extract.c	Status: Up-to-date

   Working revision:	1.3	Thu Apr 12 00:07:19 2001
   Repository revision:	1.3	/home/cvs/namd/cvsroot/namd2/src/pdb_file_extract.c,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Thursday May 3, 19101 @ 14:54
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	main.C 
Log Message:
Included reference/citation information in startup message.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1043	Thu May  3 19:36:18 2001
   Repository revision:	1.1043	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1040)
	release-2-2-beta-3       	(revision: 1.1040)
	release-2-2-beta-2       	(revision: 1.1040)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 3, 19101 @ 14:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile 
Log Message:
version 2.3b2


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1153	Thu May  3 19:56:19 2001
   Repository revision:	1.1153	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 3, 19101 @ 14:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	Makefile namd_version.tex 
Log Message:
version 2.3b2


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.19	Thu May  3 19:56:45 2001
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: namd_version.tex 	Status: Up-to-date

   Working revision:	1.13	Thu May  3 19:56:49 2001
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/ug/namd_version.tex,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday May 3, 19101 @ 15:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	ug_basic.tex 
Log Message:
fixed lies about stepspercycle


===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.15	Thu May  3 20:03:56 2001
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.11)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Tuesday May 8, 19101 @ 15:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	ug_macros.tex ug_psfgen.tex ug_start.tex 
Log Message:
More documentation for psfgen.


===================================================================
File: ug_macros.tex    	Status: Up-to-date

   Working revision:	1.4	Tue May  8 20:57:31 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/ug/ug_macros.tex,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ug_psfgen.tex    	Status: Up-to-date

   Working revision:	1.5	Tue May  8 20:57:31 2001
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/ug/ug_psfgen.tex,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.2)

===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.10	Tue May  8 16:06:42 2001
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Saturday May 12, 19101 @ 13:29
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv21769

Added Files:
	Solaris-Sparc-MPI.arch 
Log Message:
add Sun MPI version.


===================================================================
File: Solaris-Sparc-MPI.arch	Status: Up-to-date

   Working revision:	1.1	Sat May 12 18:29:15 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc-MPI.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday May 22, 19101 @ 10:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory napoli.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	topo_defs.c 
Log Message:
fixed buffer overflow error


===================================================================
File: topo_defs.c      	Status: Up-to-date

   Working revision:	1.3	Tue May 22 15:57:30 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/topo_defs.c,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Tuesday May 22, 19101 @ 15:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile 
Log Message:
eliminating redundancies in .arch files


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1154	Tue May 22 19:43:31 2001
   Repository revision:	1.1154	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday May 22, 19101 @ 15:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	AIX-RS6000-xlC.arch ASCI-Red.arch Cygwin-i686-MSVC.arch 
	Cygwin-i686.arch Darwin-PPC-c++.arch HPUX-CC.arch 
	HPUX-KCC.arch HPUX-PA2.0-aCC.arch HPUX-aCC.arch HPUX-g++.arch 
	IBM-SP.arch Linux-Alpha-MPI-cxx.arch 
	Linux-Alpha-Scyld-cxx.arch Linux-Alpha-ScyldCD-cxx.arch 
	Linux-Alpha-cxx.arch Linux-Alpha-g++.arch Linux-i686-KCC.arch 
	Linux-i686-MPI-pgCC.arch Linux-i686-MPI.arch 
	Linux-i686-Scyld.arch Linux-i686-ScyldCD.arch 
	Linux-i686-g++.arch Linux-ia64-g++.arch Origin2000-CC.arch 
	Origin2000-MPI-CC.arch Solaris-Sparc-CC.arch 
	Solaris-Sparc-g++.arch Solaris-i686-g++.arch T3E-CC.arch 
	Tru64-Alpha-CC.arch Tru64-Alpha-MPI-CC.arch 
	Tru64-Alpha-g++.arch Win32-i686-MSVC.arch 
Log Message:
eliminating redundancies in .arch files


===================================================================
File: AIX-RS6000-xlC.arch	Status: Up-to-date

   Working revision:	1.4	Tue May 22 19:46:52 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000-xlC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)

===================================================================
File: ASCI-Red.arch    	Status: Up-to-date

   Working revision:	1.4	Tue May 22 19:46:56 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/ASCI-Red.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Cygwin-i686-MSVC.arch	Status: Up-to-date

   Working revision:	1.3	Tue May 22 19:47:00 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686-MSVC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: Cygwin-i686.arch 	Status: Up-to-date

   Working revision:	1.4	Tue May 22 19:47:03 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.3)

===================================================================
File: Darwin-PPC-c++.arch	Status: Up-to-date

   Working revision:	1.3	Tue May 22 19:49:38 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Darwin-PPC-c++.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX-CC.arch     	Status: Up-to-date

   Working revision:	1.2	Tue May 22 19:49:46 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/HPUX-CC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: HPUX-KCC.arch    	Status: Up-to-date

   Working revision:	1.2	Tue May 22 19:49:52 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/HPUX-KCC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)

===================================================================
File: HPUX-PA2.0-aCC.arch	Status: Up-to-date

   Working revision:	1.2	Tue May 22 19:49:56 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/HPUX-PA2.0-aCC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)

===================================================================
File: HPUX-aCC.arch    	Status: Up-to-date

   Working revision:	1.3	Tue May 22 19:49:42 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/HPUX-aCC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: HPUX-g++.arch    	Status: Up-to-date

   Working revision:	1.2	Tue May 22 19:49:49 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/HPUX-g++.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: IBM-SP.arch      	Status: Up-to-date

   Working revision:	1.8	Tue May 22 19:54:36 2001
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.7)
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Linux-Alpha-MPI-cxx.arch	Status: Up-to-date

   Working revision:	1.2	Tue May 22 18:43:01 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha-MPI-cxx.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: Linux-Alpha-Scyld-cxx.arch	Status: Up-to-date

   Working revision:	1.2	Tue May 22 18:41:04 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha-Scyld-cxx.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: Linux-Alpha-ScyldCD-cxx.arch	Status: Up-to-date

   Working revision:	1.2	Tue May 22 18:55:20 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha-ScyldCD-cxx.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: Linux-Alpha-cxx.arch	Status: Up-to-date

   Working revision:	1.4	Tue May 22 19:50:03 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha-cxx.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.1)

===================================================================
File: Linux-Alpha-g++.arch	Status: Up-to-date

   Working revision:	1.2	Tue May 22 19:50:08 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha-g++.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)

===================================================================
File: Linux-i686-KCC.arch	Status: Up-to-date

   Working revision:	1.3	Tue May 22 19:50:25 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-KCC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Linux-i686-MPI-pgCC.arch	Status: Up-to-date

   Working revision:	1.3	Tue May 22 19:54:12 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-MPI-pgCC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: Linux-i686-MPI.arch	Status: Up-to-date

   Working revision:	1.2	Tue May 22 18:31:57 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-MPI.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)

===================================================================
File: Linux-i686-Scyld.arch	Status: Up-to-date

   Working revision:	1.3	Tue May 22 18:27:15 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Scyld.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.2)

===================================================================
File: Linux-i686-ScyldCD.arch	Status: Up-to-date

   Working revision:	1.4	Tue May 22 18:55:29 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-ScyldCD.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.3)

===================================================================
File: Linux-i686-g++.arch	Status: Up-to-date

   Working revision:	1.3	Tue May 22 19:50:17 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-g++.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Linux-ia64-g++.arch	Status: Up-to-date

   Working revision:	1.4	Tue May 22 19:50:59 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-g++.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Origin2000-CC.arch	Status: Up-to-date

   Working revision:	1.2	Tue May 22 19:51:18 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Origin2000-CC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Origin2000-MPI-CC.arch	Status: Up-to-date

   Working revision:	1.2	Tue May 22 19:03:10 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Origin2000-MPI-CC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Solaris-Sparc-CC.arch	Status: Up-to-date

   Working revision:	1.2	Tue May 22 19:51:29 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc-CC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Solaris-Sparc-g++.arch	Status: Up-to-date

   Working revision:	1.2	Tue May 22 19:51:33 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc-g++.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Solaris-i686-g++.arch	Status: Up-to-date

   Working revision:	1.2	Tue May 22 19:51:25 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Solaris-i686-g++.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: T3E-CC.arch      	Status: Up-to-date

   Working revision:	1.2	Tue May 22 19:51:39 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/T3E-CC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Tru64-Alpha-CC.arch	Status: Up-to-date

   Working revision:	1.2	Tue May 22 19:51:43 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-CC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Tru64-Alpha-MPI-CC.arch	Status: Up-to-date

   Working revision:	1.2	Tue May 22 19:51:49 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-MPI-CC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: Tru64-Alpha-g++.arch	Status: Up-to-date

   Working revision:	1.2	Tue May 22 19:51:46 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-g++.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Win32-i686-MSVC.arch	Status: Up-to-date

   Working revision:	1.8	Tue May 22 19:51:55 2001
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/arch/Win32-i686-MSVC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)


****************************************
Date:	Wednesday May 23, 19101 @ 10:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Added Files:
	Linux-i686-Scyld-icc.arch Linux-i686-icc.arch 
Log Message:
support for Intel linux compilers


===================================================================
File: Linux-i686-Scyld-icc.arch	Status: Up-to-date

   Working revision:	1.1	Tue May 22 18:37:14 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Scyld-icc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-icc.arch	Status: Up-to-date

   Working revision:	1.1	Tue May 22 19:54:09 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-icc.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday May 29, 19101 @ 11:12
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Parameters.C 
Log Message:
fixed max multiplicity (again, no uses macro)


===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1021	Tue May 29 16:09:33 2001
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1020)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday May 30, 19101 @ 13:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Controller.C Tensor.h 
Log Message:
Small changes to constant pressure - shouldn't affect algorithm.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1138	Wed May 30 16:09:28 2001
   Repository revision:	1.1138	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Tensor.h         	Status: Up-to-date

   Working revision:	1.7	Wed May 30 18:36:54 2001
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/Tensor.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.1)


****************************************
Date:	Thursday May 31, 19101 @ 15:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedUtil.C 
Log Message:
Fixed electrostatic calculation when switching is turned off.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1042	Thu May 31 20:19:52 2001
   Repository revision:	1.1042	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday June 1, 19101 @ 10:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	main.C 
Log Message:
Shortened citation instructions to two lines.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1044	Fri Jun  1 15:47:17 2001
   Repository revision:	1.1044	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1040)
	release-2-2-beta-3       	(revision: 1.1040)
	release-2-2-beta-2       	(revision: 1.1040)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday June 6, 19101 @ 15:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	config 
Log Message:
Added VMI as an architecture type (for NCSA clusters.)


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.26	Wed Jun  6 20:39:15 2001
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Wednesday June 6, 19101 @ 15:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Added Files:
	Linux-i686-VMI-pgCC.arch Linux-i686-pgCC.arch 
Removed Files:
	Linux-i686-MPI-pgCC.arch 
Log Message:
Added VMI as an architecture type (for NCSA clusters.)


===================================================================
File: Linux-i686-VMI-pgCC.arch	Status: Up-to-date

   Working revision:	1.1	Wed Jun  6 20:42:22 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-VMI-pgCC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-pgCC.arch	Status: Up-to-date

   Working revision:	1.1	Wed Jun  6 20:54:12 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-pgCC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file Linux-i686-MPI-pgCC.arch		Status: Up-to-date

   Working revision:	No entry for Linux-i686-MPI-pgCC.arch
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Attic/Linux-i686-MPI-pgCC.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Wednesday June 13, 19101 @ 11:06
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/src
In directory minsk.ks.uiuc.edu:/Home/s1/fzhu/amber/namd2/src

Modified Files:
	Molecule.C Molecule.h NamdState.C PDB.C PDB.h Parameters.C 
	Parameters.h SimParameters.C SimParameters.h 
Added Files:
	parm.C parm.h 
Log Message:
AMBER file compatibility.


===================================================================
File: parm.C           	Status: Up-to-date

   Working revision:	1.1	Thu Apr 19 19:46:16 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/parm.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: parm.h           	Status: Up-to-date

   Working revision:	1.1	Fri Apr 20 15:14:26 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/parm.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1056	Wed Jun  6 03:53:48 2001
   Repository revision:	1.1056	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1035	Tue Jun  5 05:30:30 2001
   Repository revision:	1.1035	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1034)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1030	Tue Jun  5 05:34:56 2001
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1029)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1029)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1014	Wed Jun  6 03:44:46 2001
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1013)
	release-2-2              	(revision: 1.1013)
	release-2-2-beta-3       	(revision: 1.1013)
	release-2-2-beta-2       	(revision: 1.1013)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.h            	Status: Up-to-date

   Working revision:	1.1007	Sat May 26 03:14:03 2001
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/PDB.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1006)
	release-2-2              	(revision: 1.1006)
	release-2-2-beta-3       	(revision: 1.1006)
	release-2-2-beta-2       	(revision: 1.1006)
	release-2-2-beta-1       	(revision: 1.1006)
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1022	Tue Jun  5 05:14:28 2001
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1020)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.1011	Sun Jun  3 03:49:00 2001
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/Parameters.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1010)
	release-2-2              	(revision: 1.1009)
	release-2-2-beta-3       	(revision: 1.1009)
	release-2-2-beta-2       	(revision: 1.1009)
	release-2-2-beta-1       	(revision: 1.1009)
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1123	Wed Jun  6 02:07:29 2001
   Repository revision:	1.1123	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1063	Sun Jun  3 05:39:17 2001
   Repository revision:	1.1063	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday June 13, 19101 @ 11:11
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2
In directory minsk.ks.uiuc.edu:/Home/s1/fzhu/amber/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added parm.[Ch].


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.80	Wed Jun 13 16:10:36 2001
   Repository revision:	1.80	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1155	Wed Jun 13 16:08:22 2001
   Repository revision:	1.1155	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday June 13, 19101 @ 13:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	parm.C 
Log Message:
Fixed to compile on Win32, switched to NAMD compressed file opener.


===================================================================
File: parm.C           	Status: Up-to-date

   Working revision:	1.2	Wed Jun 13 18:11:47 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/parm.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday June 13, 19101 @ 13:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	parm.C parm.h 
Log Message:
Added const to declarations to fix warnings.


===================================================================
File: parm.C           	Status: Up-to-date

   Working revision:	1.3	Wed Jun 13 18:17:58 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/parm.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: parm.h           	Status: Up-to-date

   Working revision:	1.2	Wed Jun 13 18:18:41 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/parm.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday June 14, 19101 @ 18:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	AlgSeven.C 
Log Message:
Fixed bug, cleaned up code.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.27	Thu Jun 14 22:29:40 2001
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)


****************************************
Date:	Thursday June 14, 19101 @ 19:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Controller.C 
Log Message:
Added CPU count to benchmark time.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1139	Fri Jun 15 00:21:07 2001
   Repository revision:	1.1139	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday June 14, 19101 @ 20:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedUtil.C 
Log Message:
Added more info on Coulomb table.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1043	Mon Jun 11 19:47:55 2001
   Repository revision:	1.1043	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday June 15, 19101 @ 11:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Allow load balancing parameters w/o load balance strategy.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1124	Fri Jun 15 15:39:59 2001
   Repository revision:	1.1124	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday June 17, 19101 @ 17:21
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/src
In directory minsk.ks.uiuc.edu:/Home/s1/fzhu/amber/namd2/src

Modified Files:
	Molecule.C SimParameters.C parm.C 
Log Message:
Some changes for AMBER simulations:
1. Print some AMBER options in the output
2. Now bonds with 0 force constants are ignored


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1057	Thu Jun 14 20:13:59 2001
   Repository revision:	1.1057	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1125	Sun Jun 17 22:14:45 2001
   Repository revision:	1.1125	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: parm.C           	Status: Up-to-date

   Working revision:	1.4	Thu Jun 14 03:57:17 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/parm.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday June 17, 19101 @ 17:25
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/ug
In directory minsk.ks.uiuc.edu:/Home/s1/fzhu/amber/namd2/ug

Modified Files:
	ug_io.tex 
Log Message:
Add some descriptions for reading AMBER force field


===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.13	Sun Jun 17 06:06:48 2001
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.12)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.12)
	release-2-1-beta-2       	(revision: 1.12)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Sunday June 24, 19101 @ 21:59
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Copy to local vars and (commented out) error checking code.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1067	Thu Jun 14 22:50:35 2001
   Repository revision:	1.1067	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday June 24, 19101 @ 22:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	AlgSeven.C 
Log Message:
Additional comments.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.28	Mon Jun 25 03:01:00 2001
   Repository revision:	1.28	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)


****************************************
Date:	Sunday June 24, 19101 @ 22:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Controller.C Output.C SimParameters.C SimParameters.h 
Log Message:
Added "restartsave" option for unique restart filenames.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1140	Mon Jun 18 22:58:24 2001
   Repository revision:	1.1140	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.40	Mon Jun 18 23:34:10 2001
   Repository revision:	1.40	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.39)
	release-2-2              	(revision: 1.37)
	release-2-2-beta-3       	(revision: 1.37)
	release-2-2-beta-2       	(revision: 1.35)
	release-2-2-beta-1       	(revision: 1.35)
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1126	Mon Jun 25 03:10:22 2001
   Repository revision:	1.1126	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1064	Mon Jun 18 19:34:20 2001
   Repository revision:	1.1064	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday June 24, 19101 @ 22:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	ug_io.tex 
Log Message:
Added restartsave option.


===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.14	Mon Jun 25 03:19:38 2001
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.12)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.12)
	release-2-1-beta-2       	(revision: 1.12)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Sunday June 24, 19101 @ 22:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	namd_version.tex 
Log Message:
Added Fangqiang Zhu to author list.


===================================================================
File: namd_version.tex 	Status: Up-to-date

   Working revision:	1.14	Mon Jun 25 03:23:39 2001
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/ug/namd_version.tex,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Sunday June 24, 19101 @ 22:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	ug_basic.tex 
Log Message:
Changed margin default to match code.


===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.16	Mon Jun 25 03:32:32 2001
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.11)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Wednesday June 27, 19101 @ 18:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Eliminate extra work for langevin is coefficient is zero.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1109	Wed Jun 27 23:03:54 2001
   Repository revision:	1.1109	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday June 27, 19101 @ 18:21
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory urbana:/Projects/justin/namd2/namd2/src

Modified Files:
	Molecule.C Molecule.h NamdState.C Sequencer.C SimParameters.C 
	SimParameters.h 
Log Message:
Added excludeFromPressure option.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1058	Mon Jun 18 21:38:07 2001
   Repository revision:	1.1058	/home/cvs/namd/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1036	Mon Jun 18 21:38:07 2001
   Repository revision:	1.1036	/home/cvs/namd/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1034)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1031	Mon Jun 18 21:38:07 2001
   Repository revision:	1.1031	/home/cvs/namd/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1029)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1029)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1110	Wed Jun 27 23:20:52 2001
   Repository revision:	1.1110	/home/cvs/namd/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1127	Tue Jun 26 17:26:19 2001
   Repository revision:	1.1127	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1065	Tue Jun 26 17:26:19 2001
   Repository revision:	1.1065	/home/cvs/namd/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday June 27, 19101 @ 18:22
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory urbana:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Added docs for excludeFromPressure and for surfaceTensionTarget.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.31	Wed Jun 27 23:20:36 2001
   Repository revision:	1.31	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Sunday July 1, 19101 @ 16:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Removed printf's from exPressure code!


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1111	Sun Jul  1 21:50:50 2001
   Repository revision:	1.1111	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday July 1, 19101 @ 17:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	AlgRecBisection.C AlgSeven.C ComputeGlobal.C 
	ComputeNonbondedBase.h ComputePme.C Controller.C LJTable.C 
	Measure.C PDB.C PmeRealSpace.C ProxyPatch.C ScriptTcl.C 
	WorkDistrib.C 
Log Message:
Removed deadwood that generated warnings.


===================================================================
File: AlgRecBisection.C	Status: Up-to-date

   Working revision:	1.6	Sun Jul  1 22:03:38 2001
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/AlgRecBisection.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.29	Sun Jul  1 22:02:56 2001
   Repository revision:	1.29	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.28	Sun Jul  1 22:05:37 2001
   Repository revision:	1.28	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.23)
	release-2-2-beta-1       	(revision: 1.23)
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1068	Sun Jul  1 22:06:30 2001
   Repository revision:	1.1068	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.34	Sun Jul  1 22:09:02 2001
   Repository revision:	1.34	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1141	Sun Jul  1 22:14:33 2001
   Repository revision:	1.1141	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.C        	Status: Up-to-date

   Working revision:	1.1015	Sun Jul  1 22:15:51 2001
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/LJTable.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1012)
	release-2-2              	(revision: 1.1012)
	release-2-2-beta-3       	(revision: 1.1012)
	release-2-2-beta-2       	(revision: 1.1012)
	release-2-2-beta-1       	(revision: 1.1012)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Measure.C        	Status: Up-to-date

   Working revision:	1.3	Sun Jul  1 22:16:50 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/Measure.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1015	Sun Jul  1 22:17:29 2001
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1013)
	release-2-2              	(revision: 1.1013)
	release-2-2-beta-3       	(revision: 1.1013)
	release-2-2-beta-2       	(revision: 1.1013)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PmeRealSpace.C   	Status: Up-to-date

   Working revision:	1.6	Sun Jul  1 22:18:50 2001
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/PmeRealSpace.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1032	Sun Jul  1 22:20:04 2001
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1031)
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1023)
	release-2-1-beta-4       	(revision: 1.1023)
	release-2-1-beta-3       	(revision: 1.1023)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.29	Sun Jul  1 22:20:47 2001
   Repository revision:	1.29	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1102	Sun Jul  1 22:25:10 2001
   Repository revision:	1.1102	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday July 1, 19101 @ 19:31
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Linux-i686-g++.arch 
Log Message:
Removed -Wall to avoid compiler bug on LdbCoordinator::initialize().


===================================================================
File: Linux-i686-g++.arch	Status: Up-to-date

   Working revision:	1.4	Mon Jul  2 00:30:43 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-g++.arch,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Monday July 2, 19101 @ 0:53
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	announce.txt notes.txt 
Log Message:
Updated for 2.3b2.


===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.15	Mon Jul  2 05:51:57 2001
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.28	Mon Jul  2 05:34:31 2001
   Repository revision:	1.28	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Monday July 2, 19101 @ 1:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	notes.txt 
Log Message:
Fixed charm version, etc.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.29	Mon Jul  2 06:49:41 2001
   Repository revision:	1.29	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.28)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Wednesday July 4, 19101 @ 0:20
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/src
In directory minsk.ks.uiuc.edu:/Home/s1/fzhu/namd/namd2/src

Modified Files:
	ComputeMap.h ComputeMgr.C Molecule.C Molecule.h NamdState.C 
	SimParameters.C SimParameters.h WorkDistrib.C 
Added Files:
	ComputeConsForce.C ComputeConsForce.h 
Log Message:
For the feature of applying constant forces to atoms.


===================================================================
File: ComputeConsForce.C	Status: Up-to-date

   Working revision:	1.1	Wed Jun 27 05:27:11 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeConsForce.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeConsForce.h	Status: Up-to-date

   Working revision:	1.1	Wed Jun 27 05:27:11 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeConsForce.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1025	Wed Jun 27 05:27:13 2001
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1044	Wed Jun 27 05:27:14 2001
   Repository revision:	1.1044	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1059	Wed Jul  4 05:09:36 2001
   Repository revision:	1.1059	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1037	Wed Jul  4 05:09:37 2001
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1034)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1032	Wed Jul  4 05:09:37 2001
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1031)
	release-2-3-beta-1       	(revision: 1.1029)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1029)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1128	Wed Jul  4 05:09:39 2001
   Repository revision:	1.1128	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1066	Wed Jul  4 05:09:40 2001
   Repository revision:	1.1066	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1103	Wed Jul  4 05:09:40 2001
   Repository revision:	1.1103	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 4, 19101 @ 0:27
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2
In directory minsk.ks.uiuc.edu:/Home/s1/fzhu/namd/namd2

Modified Files:
	Makefile 
Log Message:
Add file ComputeConsForce.o for constant force feature.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1156	Wed Jul  4 05:24:14 2001
   Repository revision:	1.1156	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 4, 19101 @ 0:29
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/ug
In directory minsk.ks.uiuc.edu:/Home/s1/fzhu/namd/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Add a feature of applying constant forces.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.32	Wed Jul  4 05:05:58 2001
   Repository revision:	1.32	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday July 6, 19101 @ 13:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Make.depends 
Log Message:
Added ComputeConsForce dependencies.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.81	Fri Jul  6 18:03:40 2001
   Repository revision:	1.81	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Friday July 6, 19101 @ 13:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	announce.txt 
Log Message:
KS suggestions.


===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.16	Mon Jul  2 22:02:48 2001
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Friday July 13, 19101 @ 17:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	dcdlib.C 
Log Message:
Enabled large file support - hope this doesn't break anything.


===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.19	Fri Jul 13 22:12:01 2001
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday July 18, 19101 @ 9:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedUtil.C 
Log Message:
Added defines for future use of restrict keyword.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1044	Mon Jul 16 21:39:14 2001
   Repository revision:	1.1044	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 18, 19101 @ 12:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	CollectionMaster.C CollectionMaster.ci CollectionMaster.h 
	CollectionMgr.C CollectionMgr.h 
Added Files:
	DataStream.C DataStream.h 
Log Message:
Barry's dout changes.


===================================================================
File: DataStream.C     	Status: Up-to-date

   Working revision:	1.1	Wed Jul 18 15:43:46 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/DataStream.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: DataStream.h     	Status: Up-to-date

   Working revision:	1.1	Wed Jul 18 15:00:04 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/DataStream.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1026	Wed Jul 18 16:59:15 2001
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.ci	Status: Up-to-date

   Working revision:	1.1007	Wed Jul 18 15:24:58 2001
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.ci,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1006)
	release-2-3-beta-1       	(revision: 1.1006)
	release-2-2              	(revision: 1.1006)
	release-2-2-beta-3       	(revision: 1.1006)
	release-2-2-beta-2       	(revision: 1.1006)
	release-2-2-beta-1       	(revision: 1.1006)
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1024	Wed Jul 18 16:46:37 2001
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1023)
	release-2-3-beta-1       	(revision: 1.1023)
	release-2-2              	(revision: 1.1023)
	release-2-2-beta-3       	(revision: 1.1023)
	release-2-2-beta-2       	(revision: 1.1023)
	release-2-2-beta-1       	(revision: 1.1021)
	release-2-1              	(revision: 1.1020)
	release-2-1-beta-4       	(revision: 1.1020)
	release-2-1-beta-3       	(revision: 1.1020)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1021	Wed Jul 18 16:51:16 2001
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1020)
	release-2-3-beta-1       	(revision: 1.1020)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMgr.h  	Status: Up-to-date

   Working revision:	1.1021	Wed Jul 18 15:11:03 2001
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.h,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1020)
	release-2-3-beta-1       	(revision: 1.1020)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday July 27, 19101 @ 13:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	topo_mol.c 
Log Message:
Fixed bugs in patch with error reporting sprintf calls.


===================================================================
File: topo_mol.c       	Status: Up-to-date

   Working revision:	1.6	Fri Jul 27 15:35:09 2001
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/topo_mol.c,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.3)


****************************************
Date:	Monday July 30, 19101 @ 10:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	psf_file_extract.c 
Log Message:
Fixed missing initialization.


===================================================================
File: psf_file_extract.c	Status: Up-to-date

   Working revision:	1.2	Mon Jul 30 15:09:16 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/psf_file_extract.c,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Tuesday July 31, 19101 @ 17:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	topo_mol.c 
Log Message:
Added bond-based intuitive coordinate guessing (mostly for hydrogens).


===================================================================
File: topo_mol.c       	Status: Up-to-date

   Working revision:	1.7	Tue Jul 31 22:06:21 2001
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/topo_mol.c,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.3)


****************************************
Date:	Tuesday July 31, 19101 @ 19:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	topo_mol.c 
Log Message:
Added better errors messages for missing atoms or residues.


===================================================================
File: topo_mol.c       	Status: Up-to-date

   Working revision:	1.8	Wed Aug  1 00:02:24 2001
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/topo_mol.c,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.3)


****************************************
Date:	Tuesday July 31, 19101 @ 19:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	build.c 
Log Message:
Fixed error in patch - ntargets was fixed at 2.


===================================================================
File: build.c          	Status: Up-to-date

   Working revision:	1.10	Wed Aug  1 00:46:23 2001
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/build.c,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.9)
	release-2-3-beta-1       	(revision: 1.4)


****************************************
Date:	Wednesday August 1, 19101 @ 8:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	ug_io.tex 
Log Message:
Initial positions/velocities are not included in DCD file.


===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.15	Wed Aug  1 13:44:03 2001
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.12)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.12)
	release-2-1-beta-2       	(revision: 1.12)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Wednesday August 1, 19101 @ 18:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	CollectionMgr.C 
Log Message:
Fixed stupid bug in rapidly coded data stream feature.  Doh!


===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1022	Wed Aug  1 23:32:09 2001
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1020)
	release-2-3-beta-1       	(revision: 1.1020)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 1, 19101 @ 18:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	CollectionMaster.C 
Log Message:
Added large file support for data stream output file.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1027	Wed Aug  1 23:36:48 2001
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 1, 19101 @ 19:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	CollectionMaster.C SimParameters.C SimParameters.h 
Log Message:
Added option "auxFile" and backups for auxiliary data stream file.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1028	Thu Aug  2 00:11:23 2001
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1129	Thu Aug  2 00:00:07 2001
   Repository revision:	1.1129	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1067	Wed Aug  1 23:58:23 2001
   Repository revision:	1.1067	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 1, 19101 @ 19:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile Make.depends 
Log Message:
Added DataStream.C for auxiliary data stream output.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1157	Wed Jul 18 15:00:42 2001
   Repository revision:	1.1157	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.82	Thu Aug  2 00:20:23 2001
   Repository revision:	1.82	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Wednesday August 1, 19101 @ 19:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile announce.txt notes.txt 
Log Message:
Updated version to 2.3.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1158	Thu Aug  2 00:35:30 2001
   Repository revision:	1.1158	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.17	Thu Aug  2 00:37:18 2001
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.30	Thu Aug  2 00:37:49 2001
   Repository revision:	1.30	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Wednesday August 1, 19101 @ 19:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	Makefile namd_version.tex 
Log Message:
Updated version to 2.3.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.20	Thu Aug  2 00:35:18 2001
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.19)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: namd_version.tex 	Status: Up-to-date

   Working revision:	1.15	Thu Aug  2 00:35:22 2001
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/ug/namd_version.tex,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday August 2, 19101 @ 9:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	ug_avail.tex 
Log Message:
Updated platforms.


===================================================================
File: ug_avail.tex     	Status: Up-to-date

   Working revision:	1.7	Thu Aug  2 14:11:46 2001
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/ug/ug_avail.tex,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday August 2, 19101 @ 9:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	ug_intro.tex 
Log Message:
Added AMBER file compatibility to list of new features.


===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.16	Thu Aug  2 14:36:40 2001
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.15)
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Thursday August 2, 19101 @ 9:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	ug_psfgen.tex 
Log Message:
Updated for new psfgen coordinate guessing capabilities.


===================================================================
File: ug_psfgen.tex    	Status: Up-to-date

   Working revision:	1.6	Thu Aug  2 14:37:06 2001
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/ug/ug_psfgen.tex,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.2)


****************************************
Date:	Thursday August 2, 19101 @ 9:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/ug

Modified Files:
	ug_psfgen.tex 
Log Message:
Switched occupancy for guessed coords to 0, known coords to 1 to allow
direct use of the fixed atoms feature to refine guesses.


===================================================================
File: ug_psfgen.tex    	Status: Up-to-date

   Working revision:	1.7	Thu Aug  2 14:45:06 2001
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/ug/ug_psfgen.tex,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.2)


****************************************
Date:	Thursday August 2, 19101 @ 9:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	topo_mol_output.c 
Log Message:
Switched occupancy for guessed coords to 0, known coords to 1 to allow
direct use of the fixed atoms feature to refine guesses.


===================================================================
File: topo_mol_output.c	Status: Up-to-date

   Working revision:	1.6	Thu Aug  2 14:40:48 2001
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/topo_mol_output.c,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Thursday August 2, 19101 @ 11:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	build.c 
Log Message:
Added short banner message.


===================================================================
File: build.c          	Status: Up-to-date

   Working revision:	1.11	Thu Aug  2 16:08:03 2001
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/build.c,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.9)
	release-2-3-beta-1       	(revision: 1.4)


****************************************
Date:	Thursday August 2, 19101 @ 11:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	notes.txt 
Log Message:
Added Darwin and Solaris-MPI.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.31	Thu Aug  2 16:23:24 2001
   Repository revision:	1.31	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Monday August 6, 19101 @ 10:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv22878

Modified Files:
	Linux-i686-pgCC.arch 
Added Files:
	Linux-i686-VMI-g++.arch 
Log Message:
new version tweaks


===================================================================
File: Linux-i686-VMI-g++.arch	Status: Up-to-date

   Working revision:	1.1	Mon Aug  6 15:30:08 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-VMI-g++.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-pgCC.arch	Status: Up-to-date

   Working revision:	1.2	Mon Aug  6 15:30:08 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-pgCC.arch,v

   Existing Tags:
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Sunday August 12, 19101 @ 0:46
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	psf_file_extract.c 
Log Message:
Fixed bug in readpsf: if a psf file had consecutive residues with the same
resid but different segids, they were read as belonging to the same residue.


===================================================================
File: psf_file_extract.c	Status: Up-to-date

   Working revision:	1.3	Sun Aug 12 05:42:27 2001
   Repository revision:	1.3	/home/cvs/namd/cvsroot/namd2/src/psf_file_extract.c,v

   Existing Tags:
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Thursday September 6, 19101 @ 0:44
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv19429

Modified Files:
	ComputePme.C 
Log Message:
use CHARM_VERSION to incorporate new charm++ version syntax.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.35	Thu Sep  6 05:44:32 2001
   Repository revision:	1.35	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Thursday September 6, 19101 @ 0:46
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv22016

Modified Files:
	Node.C 
Log Message:
changed charm++ new syntax


===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1064	Thu Sep  6 05:46:05 2001
   Repository revision:	1.1064	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1063)
	release-2-3-beta-2       	(revision: 1.1063)
	release-2-3-beta-1       	(revision: 1.1062)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1057)
	release-2-2-beta-1       	(revision: 1.1057)
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 6, 19101 @ 0:47
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv22100

Modified Files:
	BackEnd.C 
Log Message:
changed to new charm syntax


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.15	Thu Sep  6 05:47:17 2001
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	release-2-3              	(revision: 1.14)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)


****************************************
Date:	Thursday September 6, 19101 @ 0:48
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv22138

Modified Files:
	ComputeMgr.C 
Log Message:
Changed to new Charm++ syntax


===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1045	Thu Sep  6 05:48:45 2001
   Repository revision:	1.1045	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 6, 19101 @ 0:50
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv23086

Modified Files:
	ProxyMgr.C 
Log Message:
Changed to new Charm++ syntax


===================================================================
File: ProxyMgr.C       	Status: Up-to-date

   Working revision:	1.1038	Thu Sep  6 05:50:46 2001
   Repository revision:	1.1038	/Projects/namd2/cvsroot/namd2/src/ProxyMgr.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1023)
	release-2-0              	(revision: 1.1023)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1023)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1014)
	development-3            	(revision: 1.1007)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 6, 19101 @ 0:52
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv24836

Modified Files:
	PatchMgr.C 
Log Message:
CHanged to new Charm++ syntax


===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1023	Thu Sep  6 05:52:30 2001
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 6, 19101 @ 11:24
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv19044

Modified Files:
	LdbCoordinator.C ReductionMgr.C WorkDistrib.C 
Log Message:
Changed to new Charm++ syntax


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.50	Thu Sep  6 16:24:27 2001
   Repository revision:	1.50	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: ReductionMgr.C   	Status: Up-to-date

   Working revision:	1.1039	Thu Sep  6 16:24:27 2001
   Repository revision:	1.1039	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1038)
	release-2-3-beta-2       	(revision: 1.1038)
	release-2-3-beta-1       	(revision: 1.1038)
	release-2-2              	(revision: 1.1038)
	release-2-2-beta-3       	(revision: 1.1038)
	release-2-2-beta-2       	(revision: 1.1038)
	release-2-2-beta-1       	(revision: 1.1038)
	release-2-1              	(revision: 1.1037)
	release-2-1-beta-4       	(revision: 1.1037)
	release-2-1-beta-3       	(revision: 1.1037)
	release-2-1-beta-2       	(revision: 1.1037)
	release-2-1-beta-1       	(revision: 1.1035)
	release-2-0-pre-charm-syntax	(revision: 1.1031)
	release-2-0              	(revision: 1.1030)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1026)
	release-alpha-1          	(revision: 1.1020)
	development-4            	(revision: 1.1016)
	development-3            	(revision: 1.1010)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1104	Thu Sep  6 16:24:27 2001
   Repository revision:	1.1104	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 6, 19101 @ 11:48
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv2125

Modified Files:
	WorkDistrib.C 
Log Message:
a typo


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1105	Thu Sep  6 16:47:58 2001
   Repository revision:	1.1105	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 6, 19101 @ 14:15
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2
In directory hanoi:/tmp/cvs-serv6034

Modified Files:
	Makefile 
Log Message:
Win32 version need to specify libmemory-default.o of Charm++.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1159	Thu Sep  6 19:15:16 2001
   Repository revision:	1.1159	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 12, 19101 @ 12:45
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv622

Modified Files:
	parm.C 
Log Message:
comment out extern int errno.


===================================================================
File: parm.C           	Status: Up-to-date

   Working revision:	1.5	Wed Sep 12 17:45:26 2001
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/parm.C,v

   Existing Tags:
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)


****************************************
Date:	Thursday September 20, 19101 @ 14:52
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv15509

Added Files:
	Linux-ia64-VMI-g++.arch 
Log Message:
Linux IA64 with VMI and G++


===================================================================
File: Linux-ia64-VMI-g++.arch	Status: Up-to-date

   Working revision:	1.1	Thu Sep 20 19:52:55 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-VMI-g++.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday October 2, 19101 @ 16:34
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv7253

Modified Files:
	MStream.C 
Log Message:
fix the checksum bug when it reports incorrectly about: "MStream checksums do not agree!" 


===================================================================
File: MStream.C        	Status: Up-to-date

   Working revision:	1.12	Tue Oct  2 21:34:37 2001
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/MStream.C,v

   Existing Tags:
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Tuesday October 2, 19101 @ 23:11
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv7861

Modified Files:
	BackEnd.C 
Log Message:
fix the bug that new namd2 crash before it generates the output. It was my fault when porting NAMD to new Charm++ syntax: I ignored the fact that collectionMaster has to be created on PE 0.


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.16	Wed Oct  3 04:11:10 2001
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	release-2-3              	(revision: 1.14)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)


****************************************
Date:	Friday October 5, 19101 @ 14:16
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv24347

Modified Files:
	WorkDistrib.C WorkDistrib.ci 
Log Message:
remove varsize and changed to new syntax for ComputeMapChangeMsg and MapDistribMsg.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1106	Fri Oct  5 19:15:59 2001
   Repository revision:	1.1106	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.ci   	Status: Up-to-date

   Working revision:	1.1017	Fri Oct  5 19:15:59 2001
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.ci,v

   Existing Tags:
	release-2-3              	(revision: 1.1016)
	release-2-3-beta-2       	(revision: 1.1016)
	release-2-3-beta-1       	(revision: 1.1015)
	release-2-2              	(revision: 1.1014)
	release-2-2-beta-3       	(revision: 1.1013)
	release-2-2-beta-2       	(revision: 1.1013)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday October 9, 19101 @ 0:39
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv11860

Modified Files:
	MStream.C 
Log Message:
made CC compiler happy by returning a value in checkSum.


===================================================================
File: MStream.C        	Status: Up-to-date

   Working revision:	1.13	Tue Oct  9 05:39:30 2001
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/MStream.C,v

   Existing Tags:
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)


****************************************
Date:	Wednesday October 10, 19101 @ 13:05
Author:	pgrayson

Update of /home/cvs/namd/cvsroot/namd2/src
In directory irkutsk.ks.uiuc.edu:/Home/g1/pgrayson/src/namd2.gromacs/src

Modified Files:
	Molecule.C Molecule.h NamdState.C PDB.C PDB.h Parameters.C 
	Parameters.h SimParameters.C SimParameters.h 
Log Message:
This gives NAMD the ability to load GROMACS topology files, as long as
they don't use some GROMACS-specific features like constraints and dummy
atoms.  You can use it with the following config file lines:

grotopfile	dppc.top
grocoorfile 	dppc.gro
gromacs		on

(or something similar)
You are welcome to use a pdb file with the "coordinates" option instead
of a gromacs coordinate file.



===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1060	Thu Sep 13 21:54:28 2001
   Repository revision:	1.1060	/home/cvs/namd/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1038	Mon Sep 10 20:37:53 2001
   Repository revision:	1.1038	/home/cvs/namd/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1034)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1033	Fri Sep 14 16:49:22 2001
   Repository revision:	1.1033	/home/cvs/namd/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1031)
	release-2-3-beta-1       	(revision: 1.1029)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1029)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1016	Tue Sep 11 18:56:16 2001
   Repository revision:	1.1016	/home/cvs/namd/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1015)
	release-2-3-beta-2       	(revision: 1.1015)
	release-2-3-beta-1       	(revision: 1.1013)
	release-2-2              	(revision: 1.1013)
	release-2-2-beta-3       	(revision: 1.1013)
	release-2-2-beta-2       	(revision: 1.1013)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PDB.h            	Status: Up-to-date

   Working revision:	1.1008	Wed Sep  5 20:56:44 2001
   Repository revision:	1.1008	/home/cvs/namd/cvsroot/namd2/src/PDB.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1007)
	release-2-3-beta-2       	(revision: 1.1007)
	release-2-3-beta-1       	(revision: 1.1006)
	release-2-2              	(revision: 1.1006)
	release-2-2-beta-3       	(revision: 1.1006)
	release-2-2-beta-2       	(revision: 1.1006)
	release-2-2-beta-1       	(revision: 1.1006)
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1023	Fri Sep 14 21:22:10 2001
   Repository revision:	1.1023	/home/cvs/namd/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1020)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.1012	Fri Sep 14 17:07:35 2001
   Repository revision:	1.1012	/home/cvs/namd/cvsroot/namd2/src/Parameters.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1011)
	release-2-3-beta-2       	(revision: 1.1011)
	release-2-3-beta-1       	(revision: 1.1010)
	release-2-2              	(revision: 1.1009)
	release-2-2-beta-3       	(revision: 1.1009)
	release-2-2-beta-2       	(revision: 1.1009)
	release-2-2-beta-1       	(revision: 1.1009)
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1130	Thu Sep 13 07:01:01 2001
   Repository revision:	1.1130	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1068	Wed Sep  5 18:11:24 2001
   Repository revision:	1.1068	/home/cvs/namd/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 10, 19101 @ 15:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile 
Log Message:
Added CXXNOALIASOPTS for ComputeNonbondedUtil.o compilation.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1160	Wed Oct 10 20:03:16 2001
   Repository revision:	1.1160	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 10, 19101 @ 16:17
Author:	pgrayson

Update of /home/cvs/namd/cvsroot/namd2
In directory irkutsk.ks.uiuc.edu:/Home/g1/pgrayson/src/namd2.gromacs

Modified Files:
	Makefile 
Log Message:
Added GromacsTopFile to the makefile.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1161	Wed Oct 10 21:17:13 2001
   Repository revision:	1.1161	/home/cvs/namd/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 10, 19101 @ 16:20
Author:	pgrayson

Update of /home/cvs/namd/cvsroot/namd2/src
In directory irkutsk.ks.uiuc.edu:/Home/g1/pgrayson/src/namd2.gromacs/src

Added Files:
	GromacsTopFile.h 
Log Message:
Adding GROMACS topology file support.


===================================================================
File: GromacsTopFile.h 	Status: Up-to-date

   Working revision:	1.1	Thu Sep 13 17:43:18 2001
   Repository revision:	1.1	/home/cvs/namd/cvsroot/namd2/src/GromacsTopFile.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday October 10, 19101 @ 16:20
Author:	pgrayson

Update of /home/cvs/namd/cvsroot/namd2/src
In directory irkutsk.ks.uiuc.edu:/Home/g1/pgrayson/src/namd2.gromacs/src

Added Files:
	GromacsTopFile.C 
Log Message:
Adding GROMACS topology file support.


===================================================================
File: GromacsTopFile.C 	Status: Up-to-date

   Working revision:	1.1	Fri Sep 14 21:47:14 2001
   Repository revision:	1.1	/home/cvs/namd/cvsroot/namd2/src/GromacsTopFile.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday October 10, 19101 @ 16:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp5/namd2/src

Modified Files:
	ComputeIMD.C 
Log Message:
Improved error handling and implemented pause.


===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.16	Wed Oct 10 21:33:19 2001
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	release-2-3              	(revision: 1.15)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.15)
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.13)
	release-2-2-beta-2       	(revision: 1.13)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Wednesday October 10, 19101 @ 17:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp5/namd2/src

Modified Files:
	ComputeIMD.C 
Log Message:
Fixed interaction between pause and detach.


===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.17	Wed Oct 10 22:14:50 2001
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	release-2-3              	(revision: 1.15)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.15)
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.13)
	release-2-2-beta-2       	(revision: 1.13)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Thursday October 11, 19101 @ 13:23
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv23187

Modified Files:
	GromacsTopFile.C GromacsTopFile.h 
Log Message:
minor changes to make compiler happy.


===================================================================
File: GromacsTopFile.C 	Status: Up-to-date

   Working revision:	1.2	Thu Oct 11 18:23:53 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/GromacsTopFile.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GromacsTopFile.h 	Status: Up-to-date

   Working revision:	1.2	Thu Oct 11 18:23:53 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/GromacsTopFile.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday October 11, 19101 @ 13:28
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv23274

Modified Files:
	LdbCoordinator.ci 
Added Files:
	AlgNbor.C AlgNbor.h NamdNborLB.C NamdNborLB.ci NamdNborLB.h 
Log Message:
added first version of Namd neigbor load balancing, not fully completed yet.


===================================================================
File: AlgNbor.C        	Status: Up-to-date

   Working revision:	1.1	Thu Oct 11 18:28:23 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/AlgNbor.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: AlgNbor.h        	Status: Up-to-date

   Working revision:	1.1	Thu Oct 11 18:28:23 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/AlgNbor.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.1	Thu Oct 11 18:28:23 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdNborLB.ci    	Status: Up-to-date

   Working revision:	1.1	Thu Oct 11 18:28:23 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.ci,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdNborLB.h     	Status: Up-to-date

   Working revision:	1.1	Thu Oct 11 18:28:23 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.ci	Status: Up-to-date

   Working revision:	1.10	Thu Oct 11 18:28:23 2001
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.ci,v

   Existing Tags:
	release-2-3              	(revision: 1.9)
	release-2-3-beta-2       	(revision: 1.9)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.2)


****************************************
Date:	Thursday October 11, 19101 @ 13:31
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2
In directory hanoi:/tmp/cvs-serv23354

Modified Files:
	Make.depends 
Log Message:
updated Make.depends


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.83	Thu Oct 11 18:31:07 2001
   Repository revision:	1.83	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Thursday October 11, 19101 @ 13:34
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2
In directory hanoi:/tmp/cvs-serv23385

Modified Files:
	Makefile 
Log Message:
updated Makefile for Neighbor lbdb.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1162	Thu Oct 11 18:34:57 2001
   Repository revision:	1.1162	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday October 12, 19101 @ 13:05
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv25612

Modified Files:
	NamdNborLB.C 
Log Message:
added a flag to check charmversion


===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.2	Fri Oct 12 18:05:08 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday October 12, 19101 @ 13:18
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv25655

Modified Files:
	NamdNborLB.C 
Log Message:
one more place I missed.


===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.3	Fri Oct 12 18:18:25 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday October 12, 19101 @ 16:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	AlgNbor.C GromacsTopFile.C parm.C 
Log Message:
Fixing unportable code.


===================================================================
File: AlgNbor.C        	Status: Up-to-date

   Working revision:	1.2	Fri Oct 12 21:05:24 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/AlgNbor.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GromacsTopFile.C 	Status: Up-to-date

   Working revision:	1.3	Fri Oct 12 21:16:06 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/GromacsTopFile.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: parm.C           	Status: Up-to-date

   Working revision:	1.6	Fri Oct 12 21:12:46 2001
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/parm.C,v

   Existing Tags:
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)


****************************************
Date:	Friday October 12, 19101 @ 16:38
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	PDB.h 
Log Message:
Fixed broken declaration.


===================================================================
File: PDB.h            	Status: Up-to-date

   Working revision:	1.1009	Fri Oct 12 21:34:39 2001
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/PDB.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1007)
	release-2-3-beta-2       	(revision: 1.1007)
	release-2-3-beta-1       	(revision: 1.1006)
	release-2-2              	(revision: 1.1006)
	release-2-2-beta-3       	(revision: 1.1006)
	release-2-2-beta-2       	(revision: 1.1006)
	release-2-2-beta-1       	(revision: 1.1006)
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday October 13, 19101 @ 19:34
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv1260

Modified Files:
	LdbCoordinator.C 
Log Message:
add include file for NamdNborLB.C


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.51	Sun Oct 14 00:34:44 2001
   Repository revision:	1.51	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Sunday October 14, 19101 @ 20:59
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv3559

Modified Files:
	NamdNborLB.C 
Log Message:
some minor changes


===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.4	Mon Oct 15 01:59:36 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday October 14, 19101 @ 21:04
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv3597

Modified Files:
	NamdNborLB.C 
Log Message:
a typo


===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.5	Mon Oct 15 02:04:08 2001
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday October 15, 19101 @ 20:56
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv6053

Modified Files:
	NamdNborLB.C AlgNbor.C 
Log Message:
 a bug fix for memory allocation.


===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.6	Tue Oct 16 01:56:15 2001
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: AlgNbor.C        	Status: Up-to-date

   Working revision:	1.3	Tue Oct 16 01:56:15 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/AlgNbor.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday October 17, 19101 @ 0:45
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv28303

Modified Files:
	NamdNborLB.C 
Log Message:
minor changes.


===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.7	Wed Oct 17 05:45:55 2001
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday October 19, 19101 @ 17:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv5576

Modified Files:
	imd.C 
Log Message:
Fixed IMD on IBM SP.


===================================================================
File: imd.C            	Status: Up-to-date

   Working revision:	1.9	Fri Oct 19 22:56:31 2001
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/imd.C,v

   Existing Tags:
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Tuesday October 23, 19101 @ 11:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeTcl.C ScriptTcl.C 
Log Message:
Eliminated inappropriate use of Tcl_Merge.


===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.26	Tue Oct 23 16:27:15 2001
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-3              	(revision: 1.25)
	release-2-3-beta-2       	(revision: 1.25)
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.21)
	release-2-2-beta-3       	(revision: 1.21)
	release-2-2-beta-2       	(revision: 1.20)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.17)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.15)
	release-2-1-beta-2       	(revision: 1.14)
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.30	Tue Oct 23 16:25:32 2001
   Repository revision:	1.30	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Tuesday October 23, 19101 @ 13:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added ComputeExt... (forces calculated by external command).


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.84	Tue Oct 23 18:19:49 2001
   Repository revision:	1.84	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1163	Mon Oct 22 22:39:25 2001
   Repository revision:	1.1163	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday October 23, 19101 @ 13:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	BOCgroup.h BackEnd.C ComputeMap.h ComputeMgr.C SimParameters.C 
	SimParameters.h WorkDistrib.C main.ci 
Added Files:
	ComputeExt.C ComputeExt.h ComputeExtMgr.ci 
Log Message:
Added ComputeExt... (forces calculated by external command).


===================================================================
File: ComputeExt.C     	Status: Up-to-date

   Working revision:	1.1	Tue Oct 23 18:16:43 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeExt.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeExt.h     	Status: Up-to-date

   Working revision:	1.1	Mon Oct 22 23:43:02 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeExt.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeExtMgr.ci 	Status: Up-to-date

   Working revision:	1.1	Mon Oct 22 22:40:01 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeExtMgr.ci,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.1010	Mon Oct 22 21:49:53 2001
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/BOCgroup.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1009)
	release-2-3-beta-2       	(revision: 1.1009)
	release-2-3-beta-1       	(revision: 1.1009)
	release-2-2              	(revision: 1.1009)
	release-2-2-beta-3       	(revision: 1.1009)
	release-2-2-beta-2       	(revision: 1.1009)
	release-2-2-beta-1       	(revision: 1.1009)
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1007)
	release-2-1-beta-3       	(revision: 1.1007)
	release-2-1-beta-2       	(revision: 1.1007)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.17	Mon Oct 22 21:49:38 2001
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	release-2-3              	(revision: 1.14)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1026	Tue Oct 23 17:34:49 2001
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1046	Tue Oct 23 17:46:04 2001
   Repository revision:	1.1046	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1131	Tue Oct 23 16:08:36 2001
   Repository revision:	1.1131	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1069	Tue Oct 23 15:59:59 2001
   Repository revision:	1.1069	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1107	Tue Oct 23 17:36:13 2001
   Repository revision:	1.1107	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.1011	Mon Oct 22 21:53:20 2001
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/main.ci,v

   Existing Tags:
	release-2-3              	(revision: 1.1010)
	release-2-3-beta-2       	(revision: 1.1010)
	release-2-3-beta-1       	(revision: 1.1010)
	release-2-2              	(revision: 1.1010)
	release-2-2-beta-3       	(revision: 1.1010)
	release-2-2-beta-2       	(revision: 1.1010)
	release-2-2-beta-1       	(revision: 1.1010)
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday October 23, 19101 @ 16:35
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv13110

Modified Files:
	AlgNbor.C LdbCoordinator.C NamdCentLB.C NamdNborLB.C 
	NamdNborLB.h SimParameters.C SimParameters.h elements.h 
Log Message:
implemented the black-red scheme neighborhood balancing, incorporate the neighborhood choice in SimParam: ldbStrategy


===================================================================
File: AlgNbor.C        	Status: Up-to-date

   Working revision:	1.4	Tue Oct 23 21:35:26 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/AlgNbor.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.52	Tue Oct 23 21:35:26 2001
   Repository revision:	1.52	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.22	Tue Oct 23 21:35:26 2001
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)

===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.8	Tue Oct 23 21:35:26 2001
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdNborLB.h     	Status: Up-to-date

   Working revision:	1.2	Tue Oct 23 21:35:26 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1132	Tue Oct 23 21:35:27 2001
   Repository revision:	1.1132	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1070	Tue Oct 23 21:35:27 2001
   Repository revision:	1.1070	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: elements.h       	Status: Up-to-date

   Working revision:	1.7	Tue Oct 23 21:35:27 2001
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/elements.h,v

   Existing Tags:
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)


****************************************
Date:	Tuesday October 23, 19101 @ 17:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeExt.C 
Log Message:
Added lattice writing, energy and virial reading.


===================================================================
File: ComputeExt.C     	Status: Up-to-date

   Working revision:	1.2	Tue Oct 23 22:54:10 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeExt.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday October 23, 19101 @ 21:14
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv27771

Modified Files:
	SimParameters.C 
Log Message:
add checking to make sure ldbPeriod > firstLdbStep


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1133	Wed Oct 24 02:14:51 2001
   Repository revision:	1.1133	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday October 23, 19101 @ 22:58
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv639

Modified Files:
	NamdNborLB.C NamdNborLB.h 
Log Message:
remove some debugging printouts


===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.9	Wed Oct 24 03:58:21 2001
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: NamdNborLB.h     	Status: Up-to-date

   Working revision:	1.3	Wed Oct 24 03:58:21 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday October 24, 19101 @ 12:04
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv10907

Modified Files:
	NamdNborLB.C 
Log Message:
fix on acc on HP-UX


===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.10	Wed Oct 24 17:04:55 2001
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday October 24, 19101 @ 13:35
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory madrid.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Controller.C SimParameters.C SimParameters.h 
Log Message:
Added constant area presure control.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1142	Wed Oct 24 18:32:27 2001
   Repository revision:	1.1142	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1134	Wed Oct 24 18:16:50 2001
   Repository revision:	1.1134	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1071	Wed Oct 24 18:10:50 2001
   Repository revision:	1.1071	/home/cvs/namd/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 24, 19101 @ 16:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeGlobal.C ComputeIMD.C IMDOutput.C IMDOutput.h 
	SimParameters.C SimParameters.h 
Log Message:
Added "IMDignore" option which is compatible with Tcl, SMD, etc.


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.29	Wed Oct 24 18:41:27 2001
   Repository revision:	1.29	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-3              	(revision: 1.28)
	release-2-3-beta-2       	(revision: 1.28)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.23)
	release-2-2-beta-1       	(revision: 1.23)
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeIMD.C     	Status: Up-to-date

   Working revision:	1.18	Wed Oct 24 20:33:20 2001
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/src/ComputeIMD.C,v

   Existing Tags:
	release-2-3              	(revision: 1.15)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.15)
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.13)
	release-2-2-beta-2       	(revision: 1.13)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: IMDOutput.C      	Status: Up-to-date

   Working revision:	1.12	Wed Oct 24 21:00:06 2001
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/IMDOutput.C,v

   Existing Tags:
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.10)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)

===================================================================
File: IMDOutput.h      	Status: Up-to-date

   Working revision:	1.10	Wed Oct 24 20:42:08 2001
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/IMDOutput.h,v

   Existing Tags:
	release-2-3              	(revision: 1.9)
	release-2-3-beta-2       	(revision: 1.9)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1135	Wed Oct 24 21:10:34 2001
   Repository revision:	1.1135	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1072	Wed Oct 24 21:10:34 2001
   Repository revision:	1.1072	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 24, 19101 @ 16:44
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory madrid.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Added docs for useConstantArea.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.33	Wed Oct 24 21:10:27 2001
   Repository revision:	1.33	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday October 26, 19101 @ 17:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeFreeEnergy.C ComputeGlobalEasy.C ComputeTcl.C 
	ConfigList.C ScriptTcl.C SimParameters.C 
Log Message:
Fixed behavior of parameter parsing with Tcl.


===================================================================
File: ComputeFreeEnergy.C	Status: Up-to-date

   Working revision:	1.26	Fri Oct 26 22:07:32 2001
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/src/ComputeFreeEnergy.C,v

   Existing Tags:
	release-2-3              	(revision: 1.25)
	release-2-3-beta-2       	(revision: 1.25)
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.23)
	release-2-2-beta-1       	(revision: 1.23)
	release-2-1              	(revision: 1.21)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.20)
	release-2-1-beta-1       	(revision: 1.18)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.14)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.12)

===================================================================
File: ComputeGlobalEasy.C	Status: Up-to-date

   Working revision:	1.11	Fri Oct 26 22:04:31 2001
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalEasy.C,v

   Existing Tags:
	release-2-3              	(revision: 1.10)
	release-2-3-beta-2       	(revision: 1.10)
	release-2-3-beta-1       	(revision: 1.10)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: ComputeTcl.C     	Status: Up-to-date

   Working revision:	1.27	Thu Oct 25 17:51:35 2001
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/src/ComputeTcl.C,v

   Existing Tags:
	release-2-3              	(revision: 1.25)
	release-2-3-beta-2       	(revision: 1.25)
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.21)
	release-2-2-beta-3       	(revision: 1.21)
	release-2-2-beta-2       	(revision: 1.20)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.17)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.15)
	release-2-1-beta-2       	(revision: 1.14)
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1018	Thu Oct 25 16:47:32 2001
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1017)
	release-2-3-beta-2       	(revision: 1.1017)
	release-2-3-beta-1       	(revision: 1.1017)
	release-2-2              	(revision: 1.1016)
	release-2-2-beta-3       	(revision: 1.1016)
	release-2-2-beta-2       	(revision: 1.1016)
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.31	Fri Oct 26 21:54:23 2001
   Repository revision:	1.31	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1136	Thu Oct 25 16:56:55 2001
   Repository revision:	1.1136	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday November 1, 19101 @ 10:38
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Added FFTW_USE_WISDOM to reduce startup time.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.36	Thu Nov  1 16:34:17 2001
   Repository revision:	1.36	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Thursday November 1, 19101 @ 12:40
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory cancun:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile 
Log Message:
Added Sync... to CIFILES list.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1164	Thu Nov  1 18:39:30 2001
   Repository revision:	1.1164	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday November 9, 19101 @ 14:52
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv3920

Modified Files:
	LdbCoordinator.C 
Log Message:
reverse the change that creating NAMD load balancer in LdbCordinate::initialize() instead of LdbCordinate::LdbCordinate(). 


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.53	Fri Nov  9 20:52:32 2001
   Repository revision:	1.53	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Friday November 9, 19101 @ 14:58
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv3947

Modified Files:
	LdbCoordinator.C 
Log Message:
add some comments.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.54	Fri Nov  9 20:58:57 2001
   Repository revision:	1.54	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Friday November 9, 19101 @ 16:58
Author:	pgrayson

Update of /Projects/namd2/cvsroot/namd2
In directory irkutsk.ks.uiuc.edu:/Home/g1/pgrayson/src/namd2

Modified Files:
	Makefile Make.depends 
Log Message:
Adding support for multiple masters.  You can now run IMD at the
same time as Tcl at the same time as SMD, etc.  Lots of things
have been renamed to make this happen!


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1165	Fri Nov  9 21:27:47 2001
   Repository revision:	1.1165	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.85	Fri Nov  9 22:52:49 2001
   Repository revision:	1.85	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Friday November 9, 19101 @ 16:58
Author:	pgrayson

Update of /Projects/namd2/cvsroot/namd2/src
In directory irkutsk.ks.uiuc.edu:/Home/g1/pgrayson/src/namd2/src

Modified Files:
	ComputeGlobal.C ComputeGlobal.h ComputeGlobalMsgs.C 
	ComputeGlobalMsgs.h ComputeMgr.C ComputeMgr.h FreeEnergyMain.C 
	FreeEnergyParse.C FreeEnergyParse.h FreeEnergyRMgr.C 
	FreeEnergyRMgr.h FreeEnergyRestrain.C FreeEnergyRestrain.h 
	GromacsTopFile.C ScriptTcl.h SimParameters.C WorkDistrib.C 
	WorkDistrib.h 
Added Files:
	GlobalMaster.C GlobalMaster.h GlobalMasterEasy.C 
	GlobalMasterEasy.h GlobalMasterFreeEnergy.C 
	GlobalMasterFreeEnergy.h GlobalMasterIMD.C GlobalMasterIMD.h 
	GlobalMasterMisc.C GlobalMasterMisc.h GlobalMasterSMD.C 
	GlobalMasterSMD.h GlobalMasterServer.C GlobalMasterServer.h 
	GlobalMasterTcl.C GlobalMasterTcl.h GlobalMasterTest.C 
	GlobalMasterTest.h 
Log Message:
Adding support for multiple masters.  You can now run IMD at the
same time as Tcl at the same time as SMD, etc.  Lots of things
have been renamed to make this happen!


===================================================================
File: GlobalMaster.C   	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:20:55 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMaster.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMaster.h   	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:20:49 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMaster.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterEasy.C	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:19:11 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterEasy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterEasy.h	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:19:05 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterEasy.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterFreeEnergy.C	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 21:58:31 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterFreeEnergy.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterFreeEnergy.h	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:21:11 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterFreeEnergy.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterIMD.C	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:19:23 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterIMD.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterIMD.h	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:19:28 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterIMD.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterMisc.C	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:19:35 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterMisc.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterMisc.h	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:19:41 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterMisc.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterSMD.C	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:20:14 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterSMD.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterSMD.h	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:20:10 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterSMD.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterServer.C	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:20:30 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterServer.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterServer.h	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:20:41 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterServer.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterTcl.C	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:19:57 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterTcl.h	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:20:01 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterTest.C	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:18:58 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTest.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterTest.h	Status: Up-to-date

   Working revision:	1.1	Fri Nov  9 19:18:51 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTest.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.30	Fri Nov  9 22:49:45 2001
   Repository revision:	1.30	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-3              	(revision: 1.28)
	release-2-3-beta-2       	(revision: 1.28)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.23)
	release-2-2-beta-1       	(revision: 1.23)
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeGlobal.h  	Status: Up-to-date

   Working revision:	1.9	Fri Nov  9 19:23:11 2001
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.h,v

   Existing Tags:
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ComputeGlobalMsgs.C	Status: Up-to-date

   Working revision:	1.9	Fri Nov  9 19:23:42 2001
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMsgs.C,v

   Existing Tags:
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeGlobalMsgs.h	Status: Up-to-date

   Working revision:	1.8	Fri Nov  9 19:23:59 2001
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMsgs.h,v

   Existing Tags:
	release-2-3              	(revision: 1.7)
	release-2-3-beta-2       	(revision: 1.7)
	release-2-3-beta-1       	(revision: 1.7)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1047	Fri Nov  9 19:22:47 2001
   Repository revision:	1.1047	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1022	Fri Nov  9 19:23:26 2001
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1021)
	release-2-3-beta-2       	(revision: 1.1021)
	release-2-3-beta-1       	(revision: 1.1021)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1013)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: FreeEnergyMain.C 	Status: Up-to-date

   Working revision:	1.4	Fri Nov  9 19:27:14 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/FreeEnergyMain.C,v

   Existing Tags:
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.2)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: FreeEnergyParse.C	Status: Up-to-date

   Working revision:	1.10	Fri Nov  9 19:27:14 2001
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/FreeEnergyParse.C,v

   Existing Tags:
	release-2-3              	(revision: 1.9)
	release-2-3-beta-2       	(revision: 1.9)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyParse.h	Status: Up-to-date

   Working revision:	1.4	Fri Nov  9 19:27:14 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/FreeEnergyParse.h,v

   Existing Tags:
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: FreeEnergyRMgr.C 	Status: Up-to-date

   Working revision:	1.7	Fri Nov  9 19:27:13 2001
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRMgr.C,v

   Existing Tags:
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyRMgr.h 	Status: Up-to-date

   Working revision:	1.6	Fri Nov  9 19:27:06 2001
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRMgr.h,v

   Existing Tags:
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: FreeEnergyRestrain.C	Status: Up-to-date

   Working revision:	1.10	Fri Nov  9 19:27:14 2001
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRestrain.C,v

   Existing Tags:
	release-2-3              	(revision: 1.9)
	release-2-3-beta-2       	(revision: 1.9)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: FreeEnergyRestrain.h	Status: Up-to-date

   Working revision:	1.7	Fri Nov  9 19:27:13 2001
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRestrain.h,v

   Existing Tags:
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: GromacsTopFile.C 	Status: Up-to-date

   Working revision:	1.4	Fri Nov  2 21:22:02 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/GromacsTopFile.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.17	Fri Nov  9 19:18:39 2001
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.16)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1137	Fri Nov  9 19:18:24 2001
   Repository revision:	1.1137	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1108	Fri Nov  9 19:31:10 2001
   Repository revision:	1.1108	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1026	Fri Nov  9 19:18:03 2001
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1023)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday November 12, 19101 @ 11:30
Author:	pgrayson

Update of /Projects/namd2/cvsroot/namd2/ug
In directory irkutsk.ks.uiuc.edu:/Home/g1/pgrayson/src/namd2/ug

Modified Files:
	ug_io.tex 
Log Message:
Added documentation for GROMACS compatibility.


===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.16	Mon Nov 12 17:17:40 2001
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-3              	(revision: 1.15)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.12)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.12)
	release-2-1-beta-2       	(revision: 1.12)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Monday November 12, 19101 @ 16:47
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	GlobalMasterTcl.C 
Log Message:
Fixed a memory leak caused by not decrementing the reference counts of the
array keys in loadcoords and loadmasses.


===================================================================
File: GlobalMasterTcl.C	Status: Up-to-date

   Working revision:	1.2	Mon Nov 12 22:15:06 2001
   Repository revision:	1.2	/home/cvs/namd/cvsroot/namd2/src/GlobalMasterTcl.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday November 12, 19101 @ 17:02
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	GlobalMasterTcl.C 
Log Message:
No need to create and delete the Tcl commands every time step.


===================================================================
File: GlobalMasterTcl.C	Status: Up-to-date

   Working revision:	1.3	Mon Nov 12 22:59:50 2001
   Repository revision:	1.3	/home/cvs/namd/cvsroot/namd2/src/GlobalMasterTcl.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday November 12, 19101 @ 23:27
Author:	pgrayson

Update of /Projects/namd2/cvsroot/namd2/src
In directory irkutsk.ks.uiuc.edu:/Home/g1/pgrayson/src/namd2/src

Removed Files:
	ComputeFreeEnergy.C ComputeFreeEnergy.h ComputeGlobalEasy.C 
	ComputeGlobalEasy.h ComputeGlobalMaster.C 
	ComputeGlobalMaster.h ComputeIMD.C ComputeIMD.h ComputeMisc.C 
	ComputeMisc.h ComputeSMD.C ComputeSMD.h ComputeTcl.C 
	ComputeTcl.h 
Log Message:
Removing files called "Compute*" that weren't actually Computes.
These have all been replaced by the "GlobalMaster*" files.


===================================================================
File: no file ComputeFreeEnergy.C		Status: Up-to-date

   Working revision:	No entry for ComputeFreeEnergy.C
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeFreeEnergy.C,v

   Existing Tags:
	release-2-3              	(revision: 1.25)
	release-2-3-beta-2       	(revision: 1.25)
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.23)
	release-2-2-beta-1       	(revision: 1.23)
	release-2-1              	(revision: 1.21)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.20)
	release-2-1-beta-1       	(revision: 1.18)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.14)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.12)

===================================================================
File: no file ComputeFreeEnergy.h		Status: Up-to-date

   Working revision:	No entry for ComputeFreeEnergy.h
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeFreeEnergy.h,v

   Existing Tags:
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.8)
	release-2-0              	(revision: 1.8)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.8)

===================================================================
File: no file ComputeGlobalEasy.C		Status: Up-to-date

   Working revision:	No entry for ComputeGlobalEasy.C
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeGlobalEasy.C,v

   Existing Tags:
	release-2-3              	(revision: 1.10)
	release-2-3-beta-2       	(revision: 1.10)
	release-2-3-beta-1       	(revision: 1.10)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: no file ComputeGlobalEasy.h		Status: Up-to-date

   Working revision:	No entry for ComputeGlobalEasy.h
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeGlobalEasy.h,v

   Existing Tags:
	release-2-3              	(revision: 1.7)
	release-2-3-beta-2       	(revision: 1.7)
	release-2-3-beta-1       	(revision: 1.7)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: no file ComputeGlobalMaster.C		Status: Up-to-date

   Working revision:	No entry for ComputeGlobalMaster.C
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeGlobalMaster.C,v

   Existing Tags:
	release-2-3              	(revision: 1.10)
	release-2-3-beta-2       	(revision: 1.10)
	release-2-3-beta-1       	(revision: 1.10)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: no file ComputeGlobalMaster.h		Status: Up-to-date

   Working revision:	No entry for ComputeGlobalMaster.h
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeGlobalMaster.h,v

   Existing Tags:
	release-2-3              	(revision: 1.9)
	release-2-3-beta-2       	(revision: 1.9)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: no file ComputeIMD.C		Status: Up-to-date

   Working revision:	No entry for ComputeIMD.C
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeIMD.C,v

   Existing Tags:
	release-2-3              	(revision: 1.15)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.15)
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.13)
	release-2-2-beta-2       	(revision: 1.13)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: no file ComputeIMD.h		Status: Up-to-date

   Working revision:	No entry for ComputeIMD.h
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeIMD.h,v

   Existing Tags:
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: no file ComputeMisc.C		Status: Up-to-date

   Working revision:	No entry for ComputeMisc.C
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeMisc.C,v

   Existing Tags:
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: no file ComputeMisc.h		Status: Up-to-date

   Working revision:	No entry for ComputeMisc.h
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeMisc.h,v

   Existing Tags:
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: no file ComputeSMD.C		Status: Up-to-date

   Working revision:	No entry for ComputeSMD.C
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeSMD.C,v

   Existing Tags:
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.16)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: no file ComputeSMD.h		Status: Up-to-date

   Working revision:	No entry for ComputeSMD.h
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeSMD.h,v

   Existing Tags:
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: no file ComputeTcl.C		Status: Up-to-date

   Working revision:	No entry for ComputeTcl.C
   Repository revision:	1.28	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeTcl.C,v

   Existing Tags:
	release-2-3              	(revision: 1.25)
	release-2-3-beta-2       	(revision: 1.25)
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.21)
	release-2-2-beta-3       	(revision: 1.21)
	release-2-2-beta-2       	(revision: 1.20)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.17)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.15)
	release-2-1-beta-2       	(revision: 1.14)
	release-2-1-beta-1       	(revision: 1.12)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.7)

===================================================================
File: no file ComputeTcl.h		Status: Up-to-date

   Working revision:	No entry for ComputeTcl.h
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeTcl.h,v

   Existing Tags:
	release-2-3              	(revision: 1.7)
	release-2-3-beta-2       	(revision: 1.7)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Tuesday November 13, 19101 @ 12:04
Author:	pgrayson

Update of /Projects/namd2/cvsroot/namd2/src
In directory irkutsk.ks.uiuc.edu:/Home/g1/pgrayson/src/namd2/src

Modified Files:
	ComputeGlobal.C ComputeGlobal.h ComputeGlobalMsgs.C 
	ComputeGlobalMsgs.h GlobalMasterServer.C 
Log Message:
Removed all references to a "master" from the Compute Globals.


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.31	Tue Nov 13 17:56:30 2001
   Repository revision:	1.31	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-3              	(revision: 1.28)
	release-2-3-beta-2       	(revision: 1.28)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.23)
	release-2-2-beta-1       	(revision: 1.23)
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeGlobal.h  	Status: Up-to-date

   Working revision:	1.10	Tue Nov 13 17:17:29 2001
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.h,v

   Existing Tags:
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ComputeGlobalMsgs.C	Status: Up-to-date

   Working revision:	1.10	Tue Nov 13 16:19:08 2001
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMsgs.C,v

   Existing Tags:
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeGlobalMsgs.h	Status: Up-to-date

   Working revision:	1.9	Tue Nov 13 16:18:46 2001
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMsgs.h,v

   Existing Tags:
	release-2-3              	(revision: 1.7)
	release-2-3-beta-2       	(revision: 1.7)
	release-2-3-beta-1       	(revision: 1.7)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: GlobalMasterServer.C	Status: Up-to-date

   Working revision:	1.2	Tue Nov 13 17:56:22 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/GlobalMasterServer.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday November 13, 19101 @ 13:04
Author:	pgrayson

Update of /Projects/namd2/cvsroot/namd2
In directory irkutsk.ks.uiuc.edu:/Home/g1/pgrayson/src/namd2

Modified Files:
	Make.depends 
Log Message:
Fixed dependencies.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.86	Tue Nov 13 18:50:07 2001
   Repository revision:	1.86	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Tuesday November 13, 19101 @ 13:04
Author:	pgrayson

Update of /Projects/namd2/cvsroot/namd2/src
In directory irkutsk.ks.uiuc.edu:/Home/g1/pgrayson/src/namd2/src

Modified Files:
	ComputeGlobal.h GlobalMasterEasy.h 
Log Message:
Fixed dependencies.


===================================================================
File: ComputeGlobal.h  	Status: Up-to-date

   Working revision:	1.11	Tue Nov 13 18:41:42 2001
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.h,v

   Existing Tags:
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: GlobalMasterEasy.h	Status: Up-to-date

   Working revision:	1.2	Tue Nov 13 18:45:17 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/GlobalMasterEasy.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday November 19, 19101 @ 21:44
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv17905

Modified Files:
	BOCgroup.h ComputeMgr.C ComputeMgr.h LdbCoordinator.C 
	LdbCoordinator.h NamdCentLB.C NamdNborLB.C Node.C 
	WorkDistrib.C WorkDistrib.h 
Log Message:
CkGroupID is no longer an integer, change all places where uses CkGroupIDs.
Also fix the problem that delaying creating load balancer BOC until SImParam is available.


===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.1011	Tue Nov 20 03:44:28 2001
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/BOCgroup.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1009)
	release-2-3-beta-2       	(revision: 1.1009)
	release-2-3-beta-1       	(revision: 1.1009)
	release-2-2              	(revision: 1.1009)
	release-2-2-beta-3       	(revision: 1.1009)
	release-2-2-beta-2       	(revision: 1.1009)
	release-2-2-beta-1       	(revision: 1.1009)
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1007)
	release-2-1-beta-3       	(revision: 1.1007)
	release-2-1-beta-2       	(revision: 1.1007)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1048	Tue Nov 20 03:44:28 2001
   Repository revision:	1.1048	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1023	Tue Nov 20 03:44:28 2001
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1021)
	release-2-3-beta-2       	(revision: 1.1021)
	release-2-3-beta-1       	(revision: 1.1021)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1013)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.55	Tue Nov 20 03:44:28 2001
   Repository revision:	1.55	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.33	Tue Nov 20 03:44:28 2001
   Repository revision:	1.33	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.32)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.32)
	release-2-2-beta-3       	(revision: 1.32)
	release-2-2-beta-2       	(revision: 1.32)
	release-2-2-beta-1       	(revision: 1.31)
	release-2-1              	(revision: 1.26)
	release-2-1-beta-4       	(revision: 1.26)
	release-2-1-beta-3       	(revision: 1.26)
	release-2-1-beta-2       	(revision: 1.26)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.23)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.23	Tue Nov 20 03:44:28 2001
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)

===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.11	Tue Nov 20 03:44:28 2001
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1065	Tue Nov 20 03:44:28 2001
   Repository revision:	1.1065	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1063)
	release-2-3-beta-2       	(revision: 1.1063)
	release-2-3-beta-1       	(revision: 1.1062)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1057)
	release-2-2-beta-1       	(revision: 1.1057)
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1109	Tue Nov 20 03:44:28 2001
   Repository revision:	1.1109	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1027	Tue Nov 20 03:44:28 2001
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1023)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday November 19, 19101 @ 23:17
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv24592

Modified Files:
	NamdNborLB.C 
Log Message:
fix a werid compiler reported bug on Cygwin.


===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.12	Tue Nov 20 05:17:51 2001
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday December 5, 19101 @ 13:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	BroadcastMgr.C BroadcastMgr.ci BroadcastMgr.h 
	BroadcastObject.h 
Log Message:
Eliminated memory leak in broadcast mechanism by using fixed-size buffer.


===================================================================
File: BroadcastMgr.C   	Status: Up-to-date

   Working revision:	1.13	Wed Dec  5 17:29:12 2001
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/BroadcastMgr.C,v

   Existing Tags:
	release-2-3              	(revision: 1.12)
	release-2-3-beta-2       	(revision: 1.12)
	release-2-3-beta-1       	(revision: 1.12)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.12)
	release-2-1-beta-2       	(revision: 1.12)
	release-2-1-beta-1       	(revision: 1.10)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.2)

===================================================================
File: BroadcastMgr.ci  	Status: Up-to-date

   Working revision:	1.6	Wed Dec  5 17:13:53 2001
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/BroadcastMgr.ci,v

   Existing Tags:
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: BroadcastMgr.h   	Status: Up-to-date

   Working revision:	1.14	Wed Dec  5 19:03:05 2001
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/BroadcastMgr.h,v

   Existing Tags:
	release-2-3              	(revision: 1.13)
	release-2-3-beta-2       	(revision: 1.13)
	release-2-3-beta-1       	(revision: 1.13)
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.13)
	release-2-2-beta-2       	(revision: 1.13)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.13)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.8)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)

===================================================================
File: BroadcastObject.h	Status: Up-to-date

   Working revision:	1.7	Wed Dec  5 19:00:32 2001
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/BroadcastObject.h,v

   Existing Tags:
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)


****************************************
Date:	Friday December 7, 19101 @ 15:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Sync.C 
Log Message:
Turned off sync since it's doing proxysync as well.


===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.19	Fri Dec  7 20:37:08 2001
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	release-2-3              	(revision: 1.18)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.15)


****************************************
Date:	Thursday December 13, 19101 @ 0:17
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2
In directory hanoi:/tmp/cvs-serv7453

Modified Files:
	Makefile 
Log Message:
added -module NeighborLB because charm++ load balancer now becomes a module.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1166	Thu Dec 13 06:17:56 2001
   Repository revision:	1.1166	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday December 13, 19101 @ 12:43
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv18831

Added Files:
	moduleinit.C 
Log Message:
this file is generated by charmc in new version of Charm++ for load balancer, however for Win32 version, I have to put the generated code as it is here.


===================================================================
File: moduleinit.C     	Status: Up-to-date

   Working revision:	1.1	Thu Dec 13 18:43:26 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/moduleinit.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday December 13, 19101 @ 12:44
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2
In directory hanoi:/tmp/cvs-serv18855

Modified Files:
	Makefile 
Log Message:
this is for win32 version with new load balancer module.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1167	Thu Dec 13 18:44:24 2001
   Repository revision:	1.1167	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday December 13, 19101 @ 16:08
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2
In directory hanoi:/tmp/cvs-serv19203

Modified Files:
	Makefile 
Log Message:
forgot -module for make projections and summey.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1168	Thu Dec 13 22:08:00 2001
   Repository revision:	1.1168	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday December 14, 19101 @ 12:33
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv11112

Modified Files:
	Node.C Patch.C Sync.C Sync.h 
Log Message:
rewrite Sync back to two level Sync original idea. Sync is still closed by default.


===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1066	Fri Dec 14 18:33:02 2001
   Repository revision:	1.1066	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1063)
	release-2-3-beta-2       	(revision: 1.1063)
	release-2-3-beta-1       	(revision: 1.1062)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1057)
	release-2-2-beta-1       	(revision: 1.1057)
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1039	Fri Dec 14 18:33:02 2001
   Repository revision:	1.1039	/Projects/namd2/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1038)
	release-2-3-beta-2       	(revision: 1.1038)
	release-2-3-beta-1       	(revision: 1.1038)
	release-2-2              	(revision: 1.1038)
	release-2-2-beta-3       	(revision: 1.1038)
	release-2-2-beta-2       	(revision: 1.1038)
	release-2-2-beta-1       	(revision: 1.1038)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1029)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1025)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.20	Fri Dec 14 18:33:02 2001
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	release-2-3              	(revision: 1.18)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.15)

===================================================================
File: Sync.h           	Status: Up-to-date

   Working revision:	1.5	Fri Dec 14 18:33:02 2001
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/Sync.h,v

   Existing Tags:
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)


****************************************
Date:	Friday December 14, 19101 @ 14:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/arch

Modified Files:
	Tru64-Alpha-CC.arch Tru64-Alpha-MPI-CC.arch 
Log Message:
Changed axp-cc to axp-cxx to match new charm.


===================================================================
File: Tru64-Alpha-CC.arch	Status: Up-to-date

   Working revision:	1.3	Fri Dec 14 20:25:09 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-CC.arch,v

   Existing Tags:
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Tru64-Alpha-MPI-CC.arch	Status: Up-to-date

   Working revision:	1.3	Fri Dec 14 20:25:15 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-MPI-CC.arch,v

   Existing Tags:
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Monday December 17, 19101 @ 11:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Output.C common.C common.h 
Log Message:
Added NAMD_err() to print out strerror(errno) on exit.


===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.41	Mon Dec 17 17:20:58 2001
   Repository revision:	1.41	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-3              	(revision: 1.40)
	release-2-3-beta-2       	(revision: 1.40)
	release-2-3-beta-1       	(revision: 1.39)
	release-2-2              	(revision: 1.37)
	release-2-2-beta-3       	(revision: 1.37)
	release-2-2-beta-2       	(revision: 1.35)
	release-2-2-beta-1       	(revision: 1.35)
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1037	Mon Dec 17 17:38:30 2001
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1036)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1035)
	release-2-2-beta-3       	(revision: 1.1035)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1036	Mon Dec 17 17:19:26 2001
   Repository revision:	1.1036	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1035)
	release-2-3-beta-2       	(revision: 1.1035)
	release-2-3-beta-1       	(revision: 1.1035)
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1024)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday December 17, 19101 @ 14:09
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv27702

Modified Files:
	Sync.C 
Log Message:
some code reorgnization.


===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.21	Mon Dec 17 20:09:35 2001
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	release-2-3              	(revision: 1.18)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.15)


****************************************
Date:	Friday December 21, 19101 @ 9:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	ScriptTcl.C 
Log Message:
Minor compiler fix.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.32	Thu Dec 20 15:50:17 2001
   Repository revision:	1.32	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Friday December 21, 19101 @ 9:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Sync.C 
Log Message:
Set useSync = 1.


===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.22	Fri Dec 21 15:39:54 2001
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	release-2-3              	(revision: 1.18)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.15)


****************************************
Date:	Thursday December 27, 19101 @ 10:00
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Solaris-Sparc-MPI.arch 
Log Message:
Switched to include Solaris-Sparc-CC.arch


===================================================================
File: Solaris-Sparc-MPI.arch	Status: Up-to-date

   Working revision:	1.2	Fri Nov  2 20:43:35 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc-MPI.arch,v

   Existing Tags:
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Thursday December 27, 19101 @ 10:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	config 
Log Message:
Added ability to add comments and use scratch directory for builds.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.27	Thu Dec 27 16:33:08 2001
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-3              	(revision: 1.26)
	release-2-3-beta-2       	(revision: 1.26)
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Thursday December 27, 19101 @ 13:31
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv349

Modified Files:
	Sync.C 
Log Message:
hack for SUN MPCC: force compiler to instantiate ArrayElementT


===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.23	Thu Dec 27 19:31:51 2001
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	release-2-3              	(revision: 1.18)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.15)


****************************************
Date:	Friday December 28, 19101 @ 9:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C ComputePme.h 
Log Message:
Eliminated PME messages which are always empty.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.37	Fri Dec 28 15:16:35 2001
   Repository revision:	1.37	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.12	Thu Dec 27 23:22:23 2001
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Friday December 28, 19101 @ 9:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	RecBisection.C 
Log Message:
Modified to always divide along x-axis if possible, to help PME scaling.


===================================================================
File: RecBisection.C   	Status: Up-to-date

   Working revision:	1.9	Fri Dec 28 00:55:44 2001
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/RecBisection.C,v

   Existing Tags:
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)


****************************************
Date:	Friday December 28, 19101 @ 11:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C ComputePme.h 
Log Message:
Simple message order hacks to reduce contention.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.38	Fri Dec 28 17:04:01 2001
   Repository revision:	1.38	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.13	Fri Dec 28 16:57:22 2001
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Friday December 28, 19101 @ 14:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	SimParameters.C WorkDistrib.C 
Log Message:
Tuned default compute partition parameters.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1138	Fri Dec 28 20:05:00 2001
   Repository revision:	1.1138	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1110	Fri Dec 28 18:37:33 2001
   Repository revision:	1.1110	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday December 28, 19101 @ 15:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Fixed double-declared variable i.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.39	Fri Dec 28 21:38:38 2001
   Repository revision:	1.39	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Saturday December 29, 19101 @ 17:40
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Fixed bug.  Was subtracting origin from coordinates twice.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.40	Sat Dec 29 23:29:34 2001
   Repository revision:	1.40	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Sunday December 30, 19101 @ 17:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Thou shalt not mod by zero.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.41	Sun Dec 30 23:15:13 2001
   Repository revision:	1.41	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Thursday January 3, 19102 @ 17:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Fixed bug with different numbers of processors for x and y dimension.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.42	Thu Jan  3 20:55:06 2002
   Repository revision:	1.42	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Sunday January 6, 19102 @ 18:42
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	NamdCentLB.C 
Log Message:
Distribute initial default proxies across empty processors.
This shouldn't be necessary, but may constrain the load balancer
and avoid placing too many proxies on a single processor.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.24	Mon Jan  7 00:36:21 2002
   Repository revision:	1.24	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Monday January 7, 19102 @ 21:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	RecBisection.C 
Log Message:
Divided along X first, then Y, to reduce PME communication.


===================================================================
File: RecBisection.C   	Status: Up-to-date

   Working revision:	1.10	Tue Jan  8 03:23:09 2002
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/RecBisection.C,v

   Existing Tags:
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)


****************************************
Date:	Tuesday January 8, 19102 @ 13:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C ComputePme.h PmeRealSpace.C PmeRealSpace.h 
Log Message:
Reduced data sent in z dimension using unified flag array.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.43	Tue Jan  8 18:48:21 2002
   Repository revision:	1.43	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.14	Tue Jan  8 18:50:51 2002
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeRealSpace.C   	Status: Up-to-date

   Working revision:	1.7	Tue Jan  8 17:18:13 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/PmeRealSpace.C,v

   Existing Tags:
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeRealSpace.h   	Status: Up-to-date

   Working revision:	1.6	Tue Jan  8 17:10:39 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/PmeRealSpace.h,v

   Existing Tags:
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Tuesday January 8, 19102 @ 13:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	RecBisection.C 
Log Message:
Eliminated X and Y splitting preference.  Not needed w/ improved PME messsages.


===================================================================
File: RecBisection.C   	Status: Up-to-date

   Working revision:	1.11	Tue Jan  8 19:17:55 2002
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/RecBisection.C,v

   Existing Tags:
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)


****************************************
Date:	Tuesday January 8, 19102 @ 13:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePmeMgr.ci 
Log Message:
Reduced data sent in z dimension using unified flag array.


===================================================================
File: ComputePmeMgr.ci 	Status: Up-to-date

   Working revision:	1.7	Tue Jan  8 17:00:50 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputePmeMgr.ci,v

   Existing Tags:
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)


****************************************
Date:	Tuesday January 8, 19102 @ 13:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	PmeRealSpace.C 
Log Message:
Small speed improvement.


===================================================================
File: PmeRealSpace.C   	Status: Up-to-date

   Working revision:	1.8	Tue Jan  8 19:43:00 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/PmeRealSpace.C,v

   Existing Tags:
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Wednesday January 9, 19102 @ 13:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C ComputePmeMgr.ci 
Log Message:
Use floats (rather than doubles) to transmit charge grid, but not during FFT.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.44	Wed Jan  9 17:20:59 2002
   Repository revision:	1.44	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePmeMgr.ci 	Status: Up-to-date

   Working revision:	1.8	Wed Jan  9 17:08:17 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ComputePmeMgr.ci,v

   Existing Tags:
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)


****************************************
Date:	Wednesday January 9, 19102 @ 14:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Solaris-Sparc-MPI.arch 
Log Message:
Updated name of charm build.


===================================================================
File: Solaris-Sparc-MPI.arch	Status: Up-to-date

   Working revision:	1.3	Wed Jan  9 20:12:09 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc-MPI.arch,v

   Existing Tags:
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Wednesday January 9, 19102 @ 16:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Added a little safety check to make sure all needed potentials are returned.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.45	Wed Jan  9 20:05:48 2002
   Repository revision:	1.45	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Wednesday January 9, 19102 @ 17:27
Author:	pgrayson

Update of /Projects/namd2/cvsroot/namd2/src
In directory irkutsk.ks.uiuc.edu:/Home/g1/pgrayson/src/namd2/src

Modified Files:
	ComputeGlobal.C GlobalMaster.C GlobalMaster.h 
	GlobalMasterServer.C GlobalMasterServer.h GlobalMasterTcl.C 
	GlobalMasterTcl.h 
Log Message:
Added functions to allow GlobalMasters to get the forces being
applied by other GlobalMasters.  This is useful for logging IMD,
among other things.


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.32	Sun Dec 16 21:24:41 2001
   Repository revision:	1.32	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-3              	(revision: 1.28)
	release-2-3-beta-2       	(revision: 1.28)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.23)
	release-2-2-beta-1       	(revision: 1.23)
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: GlobalMaster.C   	Status: Up-to-date

   Working revision:	1.2	Fri Nov 16 20:45:50 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/GlobalMaster.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMaster.h   	Status: Up-to-date

   Working revision:	1.2	Fri Nov 16 20:33:52 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/GlobalMaster.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterServer.C	Status: Up-to-date

   Working revision:	1.3	Sun Dec 16 21:24:35 2001
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/GlobalMasterServer.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterServer.h	Status: Up-to-date

   Working revision:	1.2	Fri Nov 16 19:14:09 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/GlobalMasterServer.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterTcl.C	Status: Up-to-date

   Working revision:	1.4	Mon Nov 19 16:50:36 2001
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterTcl.h	Status: Up-to-date

   Working revision:	1.2	Fri Nov 16 20:33:18 2001
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday January 9, 19102 @ 21:39
Author:	pgrayson

Update of /Projects/namd2/cvsroot/namd2/src
In directory lisboa.ks.uiuc.edu:/Home/g1/pgrayson/src/namd2/src

Modified Files:
	GlobalMasterTcl.C GlobalMasterTcl.h 
Log Message:
Added 'clearconfig' command to TCL.


===================================================================
File: GlobalMasterTcl.C	Status: Up-to-date

   Working revision:	1.5	Wed Jan  9 23:35:25 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: GlobalMasterTcl.h	Status: Up-to-date

   Working revision:	1.3	Wed Jan  9 23:30:27 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday January 10, 19102 @ 11:43
Author:	pgrayson

Update of /Projects/namd2/cvsroot/namd2/ug
In directory irkutsk.ks.uiuc.edu:/Home/g1/pgrayson/src/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Added loadforces and clearconfig to docs, removed reconfig.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.34	Thu Jan 10 17:42:18 2002
   Repository revision:	1.34	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Thursday January 10, 19102 @ 12:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeNonbondedPair.C ComputeNonbondedSelf.C 
Log Message:
Moved submission of reductions outside of load balance timings.


===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1025	Wed Jan  2 22:19:57 2002
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1024)
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1024)
	release-2-2-beta-3       	(revision: 1.1024)
	release-2-2-beta-2       	(revision: 1.1024)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1020	Wed Jan  2 22:20:09 2002
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1019)
	release-2-2-beta-3       	(revision: 1.1019)
	release-2-2-beta-2       	(revision: 1.1019)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday January 10, 19102 @ 12:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile 
Log Message:
Changed version to 2.4a1.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1169	Thu Jan 10 18:54:50 2002
   Repository revision:	1.1169	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 14, 19102 @ 9:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv14379

Modified Files:
	ComputeExt.C ComputeExtMgr.ci HomePatch.C HomePatch.h 
	NamdTypes.h 
Log Message:
Modified extForces to allow replacement of entire force, not just addition.
Also modified file formats to add atomid and charge.


===================================================================
File: ComputeExt.C     	Status: Up-to-date

   Working revision:	1.3	Mon Jan 14 15:21:03 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeExt.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeExtMgr.ci 	Status: Up-to-date

   Working revision:	1.2	Mon Jan 14 15:21:03 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeExtMgr.ci,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1089	Mon Jan 14 15:21:03 2002
   Repository revision:	1.1089	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1033	Mon Jan 14 15:21:03 2002
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1032)
	release-2-3-beta-1       	(revision: 1.1032)
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1020	Mon Jan 14 15:21:03 2002
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1018)
	release-2-2-beta-3       	(revision: 1.1018)
	release-2-2-beta-2       	(revision: 1.1018)
	release-2-2-beta-1       	(revision: 1.1018)
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1012)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 14, 19102 @ 16:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C NamdCentLB.C WorkDistrib.C WorkDistrib.h 
Log Message:
Used bit-reversal ordering to distribute patches and PME across nodes
without requiring cyclic distribution of processes from the job launcher.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.46	Mon Jan 14 22:01:42 2002
   Repository revision:	1.46	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.25	Mon Jan 14 22:40:13 2002
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1111	Mon Jan 14 21:43:46 2002
   Repository revision:	1.1111	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1028	Mon Jan 14 20:35:09 2002
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1023)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 15, 19102 @ 10:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Fixed multiple variable declaration for broken C++ compilers.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.47	Tue Jan 15 16:24:32 2002
   Repository revision:	1.47	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Wednesday January 23, 19102 @ 13:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile announce.txt notes.txt 
Log Message:
Changes for version 2.4b1.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1170	Wed Jan 23 19:16:49 2002
   Repository revision:	1.1170	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.18	Wed Jan 23 19:27:24 2002
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-3              	(revision: 1.17)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.32	Wed Jan 23 19:38:19 2002
   Repository revision:	1.32	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Wednesday January 23, 19102 @ 13:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	Makefile namd_macros.tex ug_intro.tex 
Removed Files:
	namd_version.tex 
Log Message:
Changes for version 2.4b1.  Only need to change version in one place now.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.21	Wed Jan 23 19:16:34 2002
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-3              	(revision: 1.20)
	release-2-3-beta-2       	(revision: 1.19)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: namd_macros.tex  	Status: Up-to-date

   Working revision:	1.4	Wed Jan 23 19:45:03 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/ug/namd_macros.tex,v

   Existing Tags:
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.17	Wed Jan 23 19:45:04 2002
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.15)
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: no file namd_version.tex		Status: Up-to-date

   Working revision:	No entry for namd_version.tex
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/ug/Attic/namd_version.tex,v

   Existing Tags:
	release-2-3              	(revision: 1.15)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Wednesday January 23, 19102 @ 13:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C WorkDistrib.C 
Log Message:
Removed extra-long "LOCATIONS" output lines which annoy awk.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.48	Wed Jan 23 19:46:11 2002
   Repository revision:	1.48	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1112	Wed Jan 23 19:46:26 2002
   Repository revision:	1.1112	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 29, 19102 @ 13:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	notes.txt 
Log Message:
Removed lie about charm build directories.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.33	Tue Jan 29 19:10:22 2002
   Repository revision:	1.33	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Tuesday January 29, 19102 @ 22:54
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv16626

Modified Files:
	NamdCentLB.C NamdNborLB.C 
Log Message:
updated for charm++ changes in load balancer, keep the backword compatibility.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.26	Wed Jan 30 04:54:29 2002
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)

===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.13	Wed Jan 30 04:54:30 2002
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.12)


****************************************
Date:	Wednesday January 30, 19102 @ 17:29
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	AIX-RS6000.tcl Cygwin-i686-MSVC.tcl Cygwin-i686.tcl 
	Darwin-PPC.tcl HPUX-PA2.0.tcl HPUX.tcl IBM-SP.tcl 
	Linux-Alpha.tcl Linux-i686.tcl Origin2000.tcl 
	Solaris-Sparc.tcl Solaris-i686.tcl T3E.tcl Tru64-Alpha.tcl 
	Win32.tcl 
Log Message:
Updating to Tcl 8.3 with dynamic loading.


===================================================================
File: AIX-RS6000.tcl   	Status: Up-to-date

   Working revision:	1.3	Wed Jan 30 22:59:23 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)

===================================================================
File: Cygwin-i686-MSVC.tcl	Status: Up-to-date

   Working revision:	1.2	Wed Jan 30 22:42:19 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686-MSVC.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: Cygwin-i686.tcl  	Status: Up-to-date

   Working revision:	1.2	Wed Jan 30 22:42:22 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: Darwin-PPC.tcl   	Status: Up-to-date

   Working revision:	1.2	Wed Jan 30 22:42:48 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Darwin-PPC.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: HPUX-PA2.0.tcl   	Status: Up-to-date

   Working revision:	1.2	Wed Jan 30 22:42:51 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/HPUX-PA2.0.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)

===================================================================
File: HPUX.tcl         	Status: Up-to-date

   Working revision:	1.3	Wed Jan 30 22:42:54 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/HPUX.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: IBM-SP.tcl       	Status: Up-to-date

   Working revision:	1.2	Wed Jan 30 22:59:28 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)

===================================================================
File: Linux-Alpha.tcl  	Status: Up-to-date

   Working revision:	1.2	Wed Jan 30 22:43:00 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)

===================================================================
File: Linux-i686.tcl   	Status: Up-to-date

   Working revision:	1.7	Wed Jan 30 22:43:03 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Origin2000.tcl   	Status: Up-to-date

   Working revision:	1.6	Wed Jan 30 22:43:12 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Origin2000.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Solaris-Sparc.tcl	Status: Up-to-date

   Working revision:	1.5	Wed Jan 30 22:53:05 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Solaris-i686.tcl 	Status: Up-to-date

   Working revision:	1.3	Wed Jan 30 22:43:17 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Solaris-i686.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)

===================================================================
File: T3E.tcl          	Status: Up-to-date

   Working revision:	1.3	Wed Jan 30 22:43:26 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/T3E.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Tru64-Alpha.tcl  	Status: Up-to-date

   Working revision:	1.4	Wed Jan 30 22:43:29 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Win32.tcl        	Status: Up-to-date

   Working revision:	1.5	Wed Jan 30 22:43:57 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Win32.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)


****************************************
Date:	Wednesday January 30, 19102 @ 17:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Linux-Alpha.tcl Linux-i686.tcl 
Log Message:
Add -ldl for Linux.


===================================================================
File: Linux-Alpha.tcl  	Status: Up-to-date

   Working revision:	1.3	Wed Jan 30 23:44:13 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)

===================================================================
File: Linux-i686.tcl   	Status: Up-to-date

   Working revision:	1.8	Wed Jan 30 23:44:17 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Thursday January 31, 19102 @ 17:50
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv13172

Modified Files:
	BackEnd.C 
Log Message:
type fixs for new Charm, no hurt for old charm.


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.18	Thu Jan 31 23:50:06 2002
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.14)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)


****************************************
Date:	Thursday February 7, 19102 @ 14:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeMgr.C 
Log Message:
Fixed bug due to new distribution of home pathces.


===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1049	Thu Feb  7 20:25:35 2002
   Repository revision:	1.1049	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1048)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 7, 19102 @ 17:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeNonbondedBase.h HomePatch.C NamdTypes.h WorkDistrib.C 
Log Message:
Changed nonbondedGroupSize to nonbondedGroupIsAtom to save 2 bits.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1069	Thu Feb  7 23:50:06 2002
   Repository revision:	1.1069	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1090	Thu Feb  7 21:27:35 2002
   Repository revision:	1.1090	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1021	Thu Feb  7 21:28:24 2002
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1020)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1018)
	release-2-2-beta-3       	(revision: 1.1018)
	release-2-2-beta-2       	(revision: 1.1018)
	release-2-2-beta-1       	(revision: 1.1018)
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1012)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1113	Thu Feb  7 21:26:29 2002
   Repository revision:	1.1113	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday February 9, 19102 @ 11:00
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ResizeArray.h 
Log Message:
Added const_iterator.


===================================================================
File: ResizeArray.h    	Status: Up-to-date

   Working revision:	1.11	Sat Feb  9 16:53:53 2002
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ResizeArray.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.10)
	release-2-3-beta-2       	(revision: 1.10)
	release-2-3-beta-1       	(revision: 1.10)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Saturday February 9, 19102 @ 15:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/sdixit/namd2/src

Modified Files:
	ResizeArray.h 
Log Message:
Added const_begin() and const_end().



****************************************
Date:	Saturday February 9, 19102 @ 15:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/sdixit/namd2/src

Added Files:
	Array.h MathArray.h 
Log Message:
Templates for fixed-size arrays, optionally with math operations.



****************************************
Date:	Sunday February 10, 19102 @ 18:16
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv14244

Added Files:
	Linux-ia64-ecc.arch Linux-ia64-VMI-ecc.arch 
Log Message:
arch for ia64 with ecc compiler.


===================================================================
File: Linux-ia64-ecc.arch	Status: Up-to-date

   Working revision:	1.1	Mon Feb 11 00:16:02 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-ecc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-ia64-VMI-ecc.arch	Status: Up-to-date

   Working revision:	1.1	Mon Feb 11 00:16:02 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-VMI-ecc.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday February 10, 19102 @ 18:28
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv14347

Modified Files:
	Linux-ia64-ecc.arch Linux-ia64-g++.arch 
Log Message:
fix the g++ path: changed to g++3.


===================================================================
File: Linux-ia64-ecc.arch	Status: Up-to-date

   Working revision:	1.2	Mon Feb 11 00:28:22 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-ecc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-ia64-g++.arch	Status: Up-to-date

   Working revision:	1.5	Mon Feb 11 00:28:22 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-g++.arch,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)


****************************************
Date:	Tuesday February 12, 19102 @ 17:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/sdixit/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h ComputePme.C ComputePme.h Controller.C 
	Controller.h Molecule.C Molecule.h NamdState.C NamdTypes.h 
	Parameters.C ReductionMgr.h SimParameters.C SimParameters.h 
	WorkDistrib.C 
Log Message:
Free energy perturbation from Chris Chipot and Surjit Dixit.



****************************************
Date:	Tuesday February 12, 19102 @ 17:07
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Make.depends 
Log Message:
Updates for free energy.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.87	Tue Feb 12 23:04:59 2002
   Repository revision:	1.87	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.86)
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Wednesday February 13, 19102 @ 9:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/psfgen

Log Message:
Directory /Projects/namd2/cvsroot/namd2/psfgen added to the repository


[input file was '-']

****************************************
Date:	Wednesday February 13, 19102 @ 9:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/doc
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/psfgen/doc

Log Message:
Directory /Projects/namd2/cvsroot/namd2/psfgen/doc added to the repository


[input file was '-']

****************************************
Date:	Wednesday February 13, 19102 @ 9:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/psfgen/src

Log Message:
Directory /Projects/namd2/cvsroot/namd2/psfgen/src added to the repository


[input file was '-']

****************************************
Date:	Wednesday February 13, 19102 @ 9:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/scripts
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/psfgen/scripts

Log Message:
Directory /Projects/namd2/cvsroot/namd2/psfgen/scripts added to the repository


[input file was '-']

****************************************
Date:	Wednesday February 13, 19102 @ 10:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Make.depends Makefile config 
Log Message:
Moved psfgen to separate directory tree based on Justin's version.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.88	Wed Feb 13 01:13:45 2002
   Repository revision:	1.88	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.86)
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1171	Wed Feb 13 01:12:28 2002
   Repository revision:	1.1171	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.28	Wed Feb 13 01:11:17 2002
   Repository revision:	1.28	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.27)
	release-2-3              	(revision: 1.26)
	release-2-3-beta-2       	(revision: 1.26)
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Wednesday February 13, 19102 @ 10:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/doc
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/psfgen/doc

Added Files:
	ug.tex ug_macros.tex ug_psfgen.tex ug_title.tex 
Log Message:
Moved psfgen to separate directory tree based on Justin's version.


===================================================================
File: ug.tex           	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:51:54 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/doc/ug.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_macros.tex    	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:51:54 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/doc/ug_macros.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_psfgen.tex    	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:51:54 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/doc/ug_psfgen.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ug_title.tex     	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:51:54 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/doc/ug_title.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 13, 19102 @ 10:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/scripts
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/psfgen/scripts

Added Files:
	build.tcl buildmin.tcl minimize.tcl template.conf 
Log Message:
Moved psfgen to separate directory tree based on Justin's version.


===================================================================
File: build.tcl        	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:36:04 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/scripts/build.tcl,v

   Existing Tags:
	No Tags Exist

===================================================================
File: buildmin.tcl     	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:36:04 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/scripts/buildmin.tcl,v

   Existing Tags:
	No Tags Exist

===================================================================
File: minimize.tcl     	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:36:04 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/scripts/minimize.tcl,v

   Existing Tags:
	No Tags Exist

===================================================================
File: template.conf    	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:36:04 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/scripts/template.conf,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 13, 19102 @ 10:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/psfgen/src

Added Files:
	charmm_file.c charmm_file.h charmm_parse_topo_defs.c 
	charmm_parse_topo_defs.h extract_alias.c extract_alias.h 
	hash.c hash.h hasharray.c hasharray.h memarena.c memarena.h 
	pdb_file.c pdb_file.h pdb_file_extract.c pdb_file_extract.h 
	psf_file.c psf_file.h psf_file_extract.c psf_file_extract.h 
	psfgen.h stringhash.c stringhash.h tcl_main.c tcl_psfgen.c 
	topo_defs.c topo_defs.h topo_defs_struct.h topo_mol.c 
	topo_mol.h topo_mol_output.c topo_mol_output.h 
	topo_mol_struct.h 
Log Message:
Moved psfgen to separate directory tree based on Justin's version.


===================================================================
File: charmm_file.c    	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/charmm_file.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: charmm_file.h    	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/charmm_file.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: charmm_parse_topo_defs.c	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/charmm_parse_topo_defs.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: charmm_parse_topo_defs.h	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/charmm_parse_topo_defs.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: extract_alias.c  	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/extract_alias.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: extract_alias.h  	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/extract_alias.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: hash.c           	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/hash.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: hash.h           	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/hash.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: hasharray.c      	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/hasharray.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: hasharray.h      	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/hasharray.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: memarena.c       	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/memarena.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: memarena.h       	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/memarena.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pdb_file.c       	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/pdb_file.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pdb_file.h       	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/pdb_file.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pdb_file_extract.c	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/pdb_file_extract.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: pdb_file_extract.h	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/pdb_file_extract.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: psf_file.c       	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/psf_file.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: psf_file.h       	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/psf_file.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: psf_file_extract.c	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/psf_file_extract.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: psf_file_extract.h	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/psf_file_extract.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: psfgen.h         	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/psfgen.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: stringhash.c     	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/stringhash.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: stringhash.h     	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/stringhash.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: tcl_main.c       	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/tcl_main.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: tcl_psfgen.c     	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/tcl_psfgen.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_defs.c      	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_defs.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_defs.h      	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_defs.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_defs_struct.h	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_defs_struct.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_mol.c       	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_mol.h       	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_mol_output.c	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:35 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol_output.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_mol_output.h	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:35 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol_output.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_mol_struct.h	Status: Up-to-date

   Working revision:	1.1	Wed Feb 13 01:35:35 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol_struct.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 13, 19102 @ 10:40
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Removed Files:
	build.c charmm_file.c charmm_file.h charmm_parse_topo_defs.c 
	charmm_parse_topo_defs.h extract_alias.c extract_alias.h 
	hash.c hash.h hasharray.c hasharray.h memarena.c memarena.h 
	pdb_file.c pdb_file.h pdb_file_extract.c pdb_file_extract.h 
	psf_file.c psf_file.h psf_file_extract.c psf_file_extract.h 
	psfgen.h stringhash.c stringhash.h tokenize.c topo_defs.c 
	topo_defs.h topo_defs_struct.h topo_mol.c topo_mol.h 
	topo_mol_output.c topo_mol_output.h topo_mol_struct.h 
Log Message:
Moved psfgen to separate directory tree based on Justin's version.


===================================================================
File: no file build.c		Status: Up-to-date

   Working revision:	No entry for build.c
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/Attic/build.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.11)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.9)
	release-2-3-beta-1       	(revision: 1.4)

===================================================================
File: no file charmm_file.c		Status: Up-to-date

   Working revision:	No entry for charmm_file.c
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/charmm_file.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file charmm_file.h		Status: Up-to-date

   Working revision:	No entry for charmm_file.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/charmm_file.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file charmm_parse_topo_defs.c		Status: Up-to-date

   Working revision:	No entry for charmm_parse_topo_defs.c
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/Attic/charmm_parse_topo_defs.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file charmm_parse_topo_defs.h		Status: Up-to-date

   Working revision:	No entry for charmm_parse_topo_defs.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/charmm_parse_topo_defs.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file extract_alias.c		Status: Up-to-date

   Working revision:	No entry for extract_alias.c
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/extract_alias.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file extract_alias.h		Status: Up-to-date

   Working revision:	No entry for extract_alias.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/extract_alias.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file hash.c		Status: Up-to-date

   Working revision:	No entry for hash.c
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/hash.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file hash.h		Status: Up-to-date

   Working revision:	No entry for hash.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/hash.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file hasharray.c		Status: Up-to-date

   Working revision:	No entry for hasharray.c
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/hasharray.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file hasharray.h		Status: Up-to-date

   Working revision:	No entry for hasharray.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/hasharray.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file memarena.c		Status: Up-to-date

   Working revision:	No entry for memarena.c
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/memarena.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file memarena.h		Status: Up-to-date

   Working revision:	No entry for memarena.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/memarena.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file pdb_file.c		Status: Up-to-date

   Working revision:	No entry for pdb_file.c
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/pdb_file.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file pdb_file.h		Status: Up-to-date

   Working revision:	No entry for pdb_file.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/pdb_file.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file pdb_file_extract.c		Status: Up-to-date

   Working revision:	No entry for pdb_file_extract.c
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/Attic/pdb_file_extract.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file pdb_file_extract.h		Status: Up-to-date

   Working revision:	No entry for pdb_file_extract.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/pdb_file_extract.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file psf_file.c		Status: Up-to-date

   Working revision:	No entry for psf_file.c
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/psf_file.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: no file psf_file.h		Status: Up-to-date

   Working revision:	No entry for psf_file.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/psf_file.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: no file psf_file_extract.c		Status: Up-to-date

   Working revision:	No entry for psf_file_extract.c
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/Attic/psf_file_extract.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: no file psf_file_extract.h		Status: Up-to-date

   Working revision:	No entry for psf_file_extract.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/psf_file_extract.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: no file psfgen.h		Status: Up-to-date

   Working revision:	No entry for psfgen.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/psfgen.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: no file stringhash.c		Status: Up-to-date

   Working revision:	No entry for stringhash.c
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/stringhash.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file stringhash.h		Status: Up-to-date

   Working revision:	No entry for stringhash.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/stringhash.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file tokenize.c		Status: Up-to-date

   Working revision:	No entry for tokenize.c
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/tokenize.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file topo_defs.c		Status: Up-to-date

   Working revision:	No entry for topo_defs.c
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/Attic/topo_defs.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file topo_defs.h		Status: Up-to-date

   Working revision:	No entry for topo_defs.h
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/Attic/topo_defs.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file topo_defs_struct.h		Status: Up-to-date

   Working revision:	No entry for topo_defs_struct.h
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/Attic/topo_defs_struct.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file topo_mol.c		Status: Up-to-date

   Working revision:	No entry for topo_mol.c
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/Attic/topo_mol.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.8)
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.3)

===================================================================
File: no file topo_mol.h		Status: Up-to-date

   Working revision:	No entry for topo_mol.h
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Attic/topo_mol.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file topo_mol_output.c		Status: Up-to-date

   Working revision:	No entry for topo_mol_output.c
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/Attic/topo_mol_output.c,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file topo_mol_output.h		Status: Up-to-date

   Working revision:	No entry for topo_mol_output.h
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/Attic/topo_mol_output.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: no file topo_mol_struct.h		Status: Up-to-date

   Working revision:	No entry for topo_mol_struct.h
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/Attic/topo_mol_struct.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Wednesday February 13, 19102 @ 10:40
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	Makefile ug.tex 
Removed Files:
	ug_psfgen.tex 
Log Message:
Moved psfgen to separate directory tree based on Justin's version.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.22	Wed Feb 13 16:07:20 2002
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.21)
	release-2-3              	(revision: 1.20)
	release-2-3-beta-2       	(revision: 1.19)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ug.tex           	Status: Up-to-date

   Working revision:	1.7	Wed Feb 13 16:40:30 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/ug/ug.tex,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: no file ug_psfgen.tex		Status: Up-to-date

   Working revision:	No entry for ug_psfgen.tex
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/ug/Attic/ug_psfgen.tex,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.7)
	release-2-3              	(revision: 1.7)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.2)


****************************************
Date:	Wednesday February 13, 19102 @ 11:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile 
Log Message:
Updated version to 2.4b2.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1172	Wed Feb 13 17:10:43 2002
   Repository revision:	1.1172	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 13, 19102 @ 11:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	Makefile 
Log Message:
Updated version to 2.4b2.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.23	Wed Feb 13 17:10:48 2002
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.21)
	release-2-3              	(revision: 1.20)
	release-2-3-beta-2       	(revision: 1.19)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Saturday February 16, 19102 @ 18:19
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv21459

Modified Files:
	Linux-ia64-VMI-ecc.arch Linux-ia64-ecc.arch 
Log Message:
charm version changed from icc to ecc for name consistence.


===================================================================
File: Linux-ia64-VMI-ecc.arch	Status: Up-to-date

   Working revision:	1.2	Sun Feb 17 00:19:20 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-VMI-ecc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-ia64-ecc.arch	Status: Up-to-date

   Working revision:	1.3	Sun Feb 17 00:19:20 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-ecc.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday February 18, 19102 @ 12:24
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/tmp/cvs-serv6842

Modified Files:
	SimParameters.C 
Log Message:
Fixed uninitialized variable read of FEP lambda parameters.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1140	Mon Feb 18 18:24:42 2002
   Repository revision:	1.1140	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 18, 19102 @ 17:06
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Measure.C 
Log Message:
Added "measure loadCoords [idlist]" command.


===================================================================
File: Measure.C        	Status: Up-to-date

   Working revision:	1.4	Mon Feb 18 23:03:58 2002
   Repository revision:	1.4	/home/cvs/namd/cvsroot/namd2/src/Measure.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)


****************************************
Date:	Monday February 18, 19102 @ 18:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h ComputePme.C ComputePme.h Molecule.C 
	NamdState.C NamdTypes.h SimParameters.C SimParameters.h 
	WorkDistrib.C 
Log Message:
Locally enhanced sampling.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1071	Mon Feb 18 23:54:08 2002
   Repository revision:	1.1071	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1046	Mon Feb 18 22:50:51 2002
   Repository revision:	1.1046	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1030	Mon Feb 18 22:47:22 2002
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.50	Mon Feb 18 17:54:45 2002
   Repository revision:	1.50	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.16	Mon Feb 18 17:13:25 2002
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.14)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1062	Mon Feb 18 17:12:11 2002
   Repository revision:	1.1062	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1035	Mon Feb 18 16:47:02 2002
   Repository revision:	1.1035	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1031)
	release-2-3-beta-1       	(revision: 1.1029)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1029)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1023	Mon Feb 18 15:53:41 2002
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1020)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1018)
	release-2-2-beta-3       	(revision: 1.1018)
	release-2-2-beta-2       	(revision: 1.1018)
	release-2-2-beta-1       	(revision: 1.1018)
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1012)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1141	Mon Feb 18 20:57:04 2002
   Repository revision:	1.1141	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1074	Mon Feb 18 16:01:30 2002
   Repository revision:	1.1074	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1115	Mon Feb 18 23:52:51 2002
   Repository revision:	1.1115	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 19, 19102 @ 13:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile 
Log Message:
Removed libtrace-none.a from win32 explicit link list.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1173	Tue Feb 19 19:32:21 2002
   Repository revision:	1.1173	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 19, 19102 @ 15:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile 
Log Message:
Fixed on win32 to use charmc to generate moduleinit.[Co].


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1174	Tue Feb 19 21:41:53 2002
   Repository revision:	1.1174	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 19, 19102 @ 16:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile 
Log Message:
Using conventional charm link method.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1175	Tue Feb 19 22:46:43 2002
   Repository revision:	1.1175	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 19, 19102 @ 16:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Win32.fftw Win32.tcl 
Log Message:
Using conventional charm link method.


===================================================================
File: Win32.fftw       	Status: Up-to-date

   Working revision:	1.4	Tue Feb 19 22:47:12 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Win32.fftw,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)

===================================================================
File: Win32.tcl        	Status: Up-to-date

   Working revision:	1.6	Tue Feb 19 22:47:27 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Win32.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)


****************************************
Date:	Tuesday February 19, 19102 @ 17:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile 
Log Message:
Small Windows/Tcl hack.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1176	Tue Feb 19 23:04:00 2002
   Repository revision:	1.1176	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 19, 19102 @ 17:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Win32.tcl 
Log Message:
Small Windows/Tcl hack.


===================================================================
File: Win32.tcl        	Status: Up-to-date

   Working revision:	1.7	Tue Feb 19 23:03:14 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Win32.tcl,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)


****************************************
Date:	Wednesday February 20, 19102 @ 11:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/psfgen

Added Files:
	import_tree 
Log Message:
Automated updating script.


===================================================================
File: import_tree      	Status: Up-to-date

   Working revision:	1.1	Wed Feb 20 17:10:43 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/psfgen/import_tree,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 20, 19102 @ 11:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/doc
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/psfgen/doc

Modified Files:
	ug_psfgen.tex 
Log Message:
Update from psfgen tree.


===================================================================
File: ug_psfgen.tex    	Status: Up-to-date

   Working revision:	1.2	Wed Feb 20 17:19:42 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/doc/ug_psfgen.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 20, 19102 @ 11:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/psfgen/src

Modified Files:
	tcl_psfgen.c topo_mol.c topo_mol.h topo_mol_output.c 
	topo_mol_struct.h 
Log Message:
Update from psfgen tree.


===================================================================
File: tcl_psfgen.c     	Status: Up-to-date

   Working revision:	1.2	Wed Feb 20 17:19:43 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/tcl_psfgen.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_mol.c       	Status: Up-to-date

   Working revision:	1.2	Wed Feb 20 17:19:43 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_mol.h       	Status: Up-to-date

   Working revision:	1.2	Wed Feb 20 17:19:43 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_mol_output.c	Status: Up-to-date

   Working revision:	1.2	Wed Feb 20 17:19:43 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol_output.c,v

   Existing Tags:
	No Tags Exist

===================================================================
File: topo_mol_struct.h	Status: Up-to-date

   Working revision:	1.2	Wed Feb 20 17:19:43 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol_struct.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 20, 19102 @ 16:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	Makefile namd_macros.tex ug.bib ug.tex ug_add.tex 
Added Files:
	ug_alchemy.tex 
Log Message:
Added alchemical free energy docs "as is", fixed only to build.


===================================================================
File: ug_alchemy.tex   	Status: Up-to-date

   Working revision:	1.1	Wed Feb 20 21:58:12 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/ug/ug_alchemy.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.24	Wed Feb 20 22:16:52 2002
   Repository revision:	1.24	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.21)
	release-2-3              	(revision: 1.20)
	release-2-3-beta-2       	(revision: 1.19)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: namd_macros.tex  	Status: Up-to-date

   Working revision:	1.5	Wed Feb 20 22:26:03 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/ug/namd_macros.tex,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ug.bib           	Status: Up-to-date

   Working revision:	1.2	Wed Feb 20 22:26:03 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/ug/ug.bib,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)
	release-2-1-beta-3       	(revision: 1.1)
	release-2-1-beta-2       	(revision: 1.1)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ug.tex           	Status: Up-to-date

   Working revision:	1.8	Wed Feb 20 22:26:04 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/ug/ug.tex,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.35	Wed Feb 20 21:16:26 2002
   Repository revision:	1.35	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Wednesday February 20, 19102 @ 16:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug/figures
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug/figures

Added Files:
	dual_top.eps 
Log Message:
Added alchemical free energy docs "as is", fixed only to build.


===================================================================
File: dual_top.eps     	Status: Up-to-date

   Working revision:	1.1	Wed Feb 20 20:58:13 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/ug/figures/dual_top.eps,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 20, 19102 @ 16:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	ug_alchemy.tex 
Log Message:
Fixed use of \cal.


===================================================================
File: ug_alchemy.tex   	Status: Up-to-date

   Working revision:	1.2	Wed Feb 20 22:33:49 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/ug/ug_alchemy.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 20, 19102 @ 18:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	namd_macros.tex ug_alchemy.tex 
Log Message:
Updated credits.


===================================================================
File: namd_macros.tex  	Status: Up-to-date

   Working revision:	1.6	Thu Feb 21 00:03:22 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/ug/namd_macros.tex,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ug_alchemy.tex   	Status: Up-to-date

   Working revision:	1.3	Wed Feb 20 23:59:10 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/ug/ug_alchemy.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 20, 19102 @ 18:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/ilya_drag/namd2/src

Modified Files:
	Molecule.C Molecule.h NamdState.C Sequencer.C Sequencer.h 
	SimParameters.C SimParameters.h 
Log Message:
Ilya Balabin's dragging method.
Adds movDragOn, dragFile, dragCol, movDragVel
*or* rotDragOn, dragFile, dragCol, rotDragAxis, rotDragPivot, rotDragVel


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1063	Wed Feb 20 23:40:24 2002
   Repository revision:	1.1063	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1040	Wed Feb 20 23:40:24 2002
   Repository revision:	1.1040	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1038)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1034)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1036	Wed Feb 20 23:40:25 2002
   Repository revision:	1.1036	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1031)
	release-2-3-beta-1       	(revision: 1.1029)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1029)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1112	Wed Feb 20 23:40:26 2002
   Repository revision:	1.1112	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1036	Wed Feb 20 23:40:26 2002
   Repository revision:	1.1036	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1035)
	release-2-3              	(revision: 1.1035)
	release-2-3-beta-2       	(revision: 1.1035)
	release-2-3-beta-1       	(revision: 1.1035)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1142	Wed Feb 20 23:40:27 2002
   Repository revision:	1.1142	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1075	Wed Feb 20 23:40:27 2002
   Repository revision:	1.1075	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 22, 19102 @ 10:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	ug_alchemy.tex 
Log Message:
Cleaned up and corrected parameters.


===================================================================
File: ug_alchemy.tex   	Status: Up-to-date

   Working revision:	1.4	Fri Feb 22 15:32:05 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/ug/ug_alchemy.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday February 22, 19102 @ 10:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Added locally enhanced sampling docs.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.36	Fri Feb 22 15:57:41 2002
   Repository revision:	1.36	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday February 22, 19102 @ 10:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	namd_copyright.tex 
Log Message:
Updated copyright.


===================================================================
File: namd_copyright.tex	Status: Up-to-date

   Working revision:	1.10	Fri Feb 22 14:54:11 2002
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/ug/namd_copyright.tex,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.9)
	release-2-3              	(revision: 1.9)
	release-2-3-beta-2       	(revision: 1.9)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Friday February 22, 19102 @ 10:12
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	ug_intro.tex 
Log Message:
Added new features.


===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.18	Fri Feb 22 16:12:45 2002
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.15)
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Friday February 22, 19102 @ 10:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	announce.txt notes.txt 
Log Message:
Updated for 2.4b2.


===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.19	Fri Feb 22 16:17:37 2002
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.18)
	release-2-3              	(revision: 1.17)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.34	Fri Feb 22 16:10:39 2002
   Repository revision:	1.34	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Tuesday February 26, 19102 @ 10:18
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C Random.h 
Log Message:
Randomize order of messages in transpose.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.51	Tue Feb 26 16:08:37 2002
   Repository revision:	1.51	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: Random.h         	Status: Up-to-date

   Working revision:	1.6	Tue Feb 26 15:56:07 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/Random.h,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Tuesday February 26, 19102 @ 10:42
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C ComputePme.h 
Log Message:
Randomized order of initial distribution as well.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.52	Tue Feb 26 16:35:26 2002
   Repository revision:	1.52	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.17	Tue Feb 26 16:34:40 2002
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.16)
	release-2-4-beta-1       	(revision: 1.14)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Tuesday February 26, 19102 @ 14:29
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Controller.C Controller.h 
Log Message:
Fixed absurb wall times due to changes in charm.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1144	Tue Feb 26 20:11:42 2002
   Repository revision:	1.1144	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1039	Tue Feb 26 20:10:43 2002
   Repository revision:	1.1039	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 4, 19102 @ 15:48
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv13681

Modified Files:
	Sync.C 
Log Message:
remove the unnecessary compiler hack for mpCC.


===================================================================
File: Sync.C           	Status: Up-to-date

   Working revision:	1.24	Mon Mar  4 21:48:50 2002
   Repository revision:	1.24	/Projects/namd2/cvsroot/namd2/src/Sync.C,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.23)
	release-2-4-beta-1       	(revision: 1.23)
	release-2-3              	(revision: 1.18)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.15)


****************************************
Date:	Tuesday March 5, 19102 @ 13:20
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	PDB.C WorkDistrib.C 
Log Message:
Now uses inner 80% of atoms to estimate size of patch grid.


===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1017	Tue Mar  5 16:34:04 2002
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.1016)
	release-2-4-beta-1       	(revision: 1.1016)
	release-2-3              	(revision: 1.1015)
	release-2-3-beta-2       	(revision: 1.1015)
	release-2-3-beta-1       	(revision: 1.1013)
	release-2-2              	(revision: 1.1013)
	release-2-2-beta-3       	(revision: 1.1013)
	release-2-2-beta-2       	(revision: 1.1013)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1116	Tue Mar  5 19:16:49 2002
   Repository revision:	1.1116	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 6, 19102 @ 13:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Controller.C 
Log Message:
Fixed erroneous non-unique coordinates warning when using MOLLY.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1145	Wed Mar  6 19:33:00 2002
   Repository revision:	1.1145	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 6, 19102 @ 20:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/psfgen/src

Modified Files:
	tcl_psfgen.c topo_mol.c topo_mol.h 
Log Message:
Sync with psfgen tree.  Warn of angle and dihedral autogeneration conflicts.


===================================================================
File: tcl_psfgen.c     	Status: Up-to-date

   Working revision:	1.3	Thu Mar  7 01:58:09 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/psfgen/src/tcl_psfgen.c,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.2)

===================================================================
File: topo_mol.c       	Status: Up-to-date

   Working revision:	1.3	Thu Mar  7 01:58:09 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol.c,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.2)

===================================================================
File: topo_mol.h       	Status: Up-to-date

   Working revision:	1.3	Thu Mar  7 01:58:09 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol.h,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.2)


****************************************
Date:	Friday March 8, 19102 @ 15:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Changed FEP and LES default column from O to B to match psfgen.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1064	Fri Mar  8 21:22:18 2002
   Repository revision:	1.1064	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 8, 19102 @ 15:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	ug_add.tex ug_alchemy.tex 
Log Message:
Changed FEP and LES default column from O to B to match psfgen.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.37	Fri Mar  8 21:24:07 2002
   Repository revision:	1.37	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_alchemy.tex   	Status: Up-to-date

   Working revision:	1.5	Fri Mar  8 21:23:19 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/ug/ug_alchemy.tex,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.4)


****************************************
Date:	Friday March 8, 19102 @ 16:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Added checks for non LES/FEP compatible full electrostatics methods.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1143	Fri Mar  8 22:18:45 2002
   Repository revision:	1.1143	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 8, 19102 @ 16:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile announce.txt notes.txt 
Log Message:
Updated version to 2.4.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1177	Fri Mar  8 22:44:14 2002
   Repository revision:	1.1177	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.20	Fri Mar  8 22:45:50 2002
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.18)
	release-2-3              	(revision: 1.17)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.35	Fri Mar  8 22:46:05 2002
   Repository revision:	1.35	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday March 8, 19102 @ 16:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	Makefile 
Log Message:
Updated version to 2.4.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.25	Fri Mar  8 22:44:24 2002
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.24)
	release-2-4-beta-1       	(revision: 1.21)
	release-2-3              	(revision: 1.20)
	release-2-3-beta-2       	(revision: 1.19)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Friday March 8, 19102 @ 17:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	Makefile 
Log Message:
Added ug.bib to dependencies.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.26	Fri Mar  8 23:01:21 2002
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.24)
	release-2-4-beta-1       	(revision: 1.21)
	release-2-3              	(revision: 1.20)
	release-2-3-beta-2       	(revision: 1.19)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Friday March 8, 19102 @ 17:07
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	ug.bib ug_add.tex 
Log Message:
Added refs from proposal to LES docs.


===================================================================
File: ug.bib           	Status: Up-to-date

   Working revision:	1.3	Fri Mar  8 23:07:45 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/ug/ug.bib,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)
	release-2-1-beta-3       	(revision: 1.1)
	release-2-1-beta-2       	(revision: 1.1)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.38	Fri Mar  8 23:04:47 2002
   Repository revision:	1.38	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday March 15, 19102 @ 10:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Measure.C 
Log Message:
Fixed missing initializations for center of mass calculation.  Whoops!


===================================================================
File: Measure.C        	Status: Up-to-date

   Working revision:	1.5	Fri Mar 15 16:03:22 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/Measure.C,v

   Existing Tags:
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)


****************************************
Date:	Friday March 15, 19102 @ 10:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Vector.h 
Log Message:
Added constructor to allow Vector v = 0, etc.


===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.1011	Fri Mar 15 16:08:00 2002
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/Vector.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1010)
	release-2-4-beta-2       	(revision: 1.1010)
	release-2-4-beta-1       	(revision: 1.1010)
	release-2-3              	(revision: 1.1010)
	release-2-3-beta-2       	(revision: 1.1010)
	release-2-3-beta-1       	(revision: 1.1010)
	release-2-2              	(revision: 1.1010)
	release-2-2-beta-3       	(revision: 1.1010)
	release-2-2-beta-2       	(revision: 1.1010)
	release-2-2-beta-1       	(revision: 1.1010)
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1007)
	release-2-1-beta-3       	(revision: 1.1007)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 18, 19102 @ 10:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/psfgen/src

Modified Files:
	psf_file_extract.c 
Log Message:
Updated changes, fixed missing initializations in atom creation.


===================================================================
File: psf_file_extract.c	Status: Up-to-date

   Working revision:	1.2	Mon Mar 18 16:46:02 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/psf_file_extract.c,v

   Existing Tags:
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)


****************************************
Date:	Tuesday March 19, 19102 @ 13:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	flipdcd.c 
Log Message:
Enhancements from Daniel Barsky <barsky@llnl.gov> to print status only,
force big or little endian, and handle multiple files in a single command.


===================================================================
File: flipdcd.c        	Status: Up-to-date

   Working revision:	1.3	Tue Mar 19 19:07:03 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/flipdcd.c,v

   Existing Tags:
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.2)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Friday March 22, 19102 @ 16:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeRestraints.C Controller.C HomePatch.C Molecule.C 
	Molecule.h NamdState.C ReductionMgr.h Sequencer.C 
	SimParameters.C SimParameters.h WorkDistrib.C 
Log Message:
Multiple changes, including ability to disable temperature and pressure
control and fixed atoms in a script, and changes to pressure calculation
to be compatible with fixed atoms and harmonic constraints.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1072	Fri Mar 22 14:27:49 2002
   Repository revision:	1.1072	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1047	Thu Mar 21 19:32:08 2002
   Repository revision:	1.1047	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeRestraints.C	Status: Up-to-date

   Working revision:	1.12	Thu Mar 21 23:32:43 2002
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/ComputeRestraints.C,v

   Existing Tags:
	release-2-4              	(revision: 1.11)
	release-2-4-beta-2       	(revision: 1.11)
	release-2-4-beta-1       	(revision: 1.11)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1146	Thu Mar 21 23:54:50 2002
   Repository revision:	1.1146	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1091	Thu Mar 21 23:37:11 2002
   Repository revision:	1.1091	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1065	Thu Mar 21 21:36:18 2002
   Repository revision:	1.1065	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1041	Thu Mar 21 21:22:10 2002
   Repository revision:	1.1041	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1040)
	release-2-4-beta-2       	(revision: 1.1040)
	release-2-4-beta-1       	(revision: 1.1038)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1034)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1037	Thu Mar 21 21:44:05 2002
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1031)
	release-2-3-beta-1       	(revision: 1.1029)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1029)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1027	Thu Mar 21 23:10:57 2002
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1026)
	release-2-4-beta-2       	(revision: 1.1026)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1025)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1113	Thu Mar 21 23:15:18 2002
   Repository revision:	1.1113	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1144	Fri Mar 22 16:06:23 2002
   Repository revision:	1.1144	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1076	Thu Mar 21 18:58:41 2002
   Repository revision:	1.1076	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1117	Thu Mar 21 19:36:43 2002
   Repository revision:	1.1117	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 26, 19102 @ 14:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Pressure control requires fixedAtomsForces on!


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1145	Mon Mar 25 21:08:58 2002
   Repository revision:	1.1145	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 26, 19102 @ 14:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Controller.C Controller.h Sequencer.C 
Log Message:
Print all fields during minimization, including pressure.
Added average pressure fields (averages since previous output).


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1147	Mon Mar 25 23:43:45 2002
   Repository revision:	1.1147	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1040	Mon Mar 25 23:30:58 2002
   Repository revision:	1.1040	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1114	Mon Mar 25 23:05:39 2002
   Repository revision:	1.1114	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday March 27, 19102 @ 17:29
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	CollectionMaster.C CollectionMaster.h Controller.C Lattice.h 
	Molecule.C Molecule.h Output.C Output.h SimParameters.C 
	SimParameters.h 
Log Message:
wrapAll -> wraps any contiguous bonded cluster
wrapNearest -> wrap to nearest image to cell origin


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1029	Wed Mar 27 19:53:14 2002
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1028)
	release-2-4-beta-2       	(revision: 1.1028)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1025	Wed Mar 27 20:44:47 2002
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1024)
	release-2-4-beta-2       	(revision: 1.1024)
	release-2-4-beta-1       	(revision: 1.1024)
	release-2-3              	(revision: 1.1024)
	release-2-3-beta-2       	(revision: 1.1023)
	release-2-3-beta-1       	(revision: 1.1023)
	release-2-2              	(revision: 1.1023)
	release-2-2-beta-3       	(revision: 1.1023)
	release-2-2-beta-2       	(revision: 1.1023)
	release-2-2-beta-1       	(revision: 1.1021)
	release-2-1              	(revision: 1.1020)
	release-2-1-beta-4       	(revision: 1.1020)
	release-2-1-beta-3       	(revision: 1.1020)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1148	Wed Mar 27 19:49:22 2002
   Repository revision:	1.1148	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1020	Wed Mar 27 21:49:09 2002
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1019)
	release-2-4-beta-2       	(revision: 1.1019)
	release-2-4-beta-1       	(revision: 1.1019)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1019)
	release-2-2-beta-3       	(revision: 1.1019)
	release-2-2-beta-2       	(revision: 1.1019)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1066	Wed Mar 27 22:51:34 2002
   Repository revision:	1.1066	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1042	Wed Mar 27 19:18:11 2002
   Repository revision:	1.1042	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1040)
	release-2-4-beta-2       	(revision: 1.1040)
	release-2-4-beta-1       	(revision: 1.1038)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1034)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.42	Wed Mar 27 22:53:16 2002
   Repository revision:	1.42	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-4              	(revision: 1.41)
	release-2-4-beta-2       	(revision: 1.41)
	release-2-4-beta-1       	(revision: 1.41)
	release-2-3              	(revision: 1.40)
	release-2-3-beta-2       	(revision: 1.40)
	release-2-3-beta-1       	(revision: 1.39)
	release-2-2              	(revision: 1.37)
	release-2-2-beta-3       	(revision: 1.37)
	release-2-2-beta-2       	(revision: 1.35)
	release-2-2-beta-1       	(revision: 1.35)
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Output.h         	Status: Up-to-date

   Working revision:	1.14	Wed Mar 27 20:57:11 2002
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/Output.h,v

   Existing Tags:
	release-2-4              	(revision: 1.13)
	release-2-4-beta-2       	(revision: 1.13)
	release-2-4-beta-1       	(revision: 1.13)
	release-2-3              	(revision: 1.13)
	release-2-3-beta-2       	(revision: 1.13)
	release-2-3-beta-1       	(revision: 1.13)
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.13)
	release-2-2-beta-2       	(revision: 1.13)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.12)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)
	development-3            	(revision: 1.1)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1146	Wed Mar 27 21:58:52 2002
   Repository revision:	1.1146	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1077	Wed Mar 27 19:26:06 2002
   Repository revision:	1.1077	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 28, 19102 @ 13:38
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	CollectionMgr.C Output.C 
Log Message:
Moved wraping totally into Output.C, wrapWater and wrapNearest now combine.


===================================================================
File: CollectionMgr.C  	Status: Up-to-date

   Working revision:	1.1023	Thu Mar 28 18:52:45 2002
   Repository revision:	1.1023	/Projects/namd2/cvsroot/namd2/src/CollectionMgr.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1022)
	release-2-4-beta-2       	(revision: 1.1022)
	release-2-4-beta-1       	(revision: 1.1022)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1020)
	release-2-3-beta-1       	(revision: 1.1020)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.43	Thu Mar 28 19:21:34 2002
   Repository revision:	1.43	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-4              	(revision: 1.41)
	release-2-4-beta-2       	(revision: 1.41)
	release-2-4-beta-1       	(revision: 1.41)
	release-2-3              	(revision: 1.40)
	release-2-3-beta-2       	(revision: 1.40)
	release-2-3-beta-1       	(revision: 1.39)
	release-2-2              	(revision: 1.37)
	release-2-2-beta-3       	(revision: 1.37)
	release-2-2-beta-2       	(revision: 1.35)
	release-2-2-beta-1       	(revision: 1.35)
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)


****************************************
Date:	Friday March 29, 19102 @ 10:01
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Controller.C Controller.h Sequencer.C Sequencer.h 
	SimParameters.C SimParameters.h 
Log Message:
Various improvements to pressure control, including flexible cells with
Berendsen, and the "useConstantRatio" option to constrain shape in the
X-Y plane (useful for membrane simulation, etc).


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1149	Thu Mar 28 17:10:13 2002
   Repository revision:	1.1149	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1041	Thu Mar 28 16:57:59 2002
   Repository revision:	1.1041	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1115	Thu Mar 28 17:17:07 2002
   Repository revision:	1.1115	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1037	Thu Mar 28 17:16:08 2002
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1035)
	release-2-3              	(revision: 1.1035)
	release-2-3-beta-2       	(revision: 1.1035)
	release-2-3-beta-1       	(revision: 1.1035)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1147	Thu Mar 28 15:46:51 2002
   Repository revision:	1.1147	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1078	Thu Mar 28 00:35:40 2002
   Repository revision:	1.1078	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 1, 19102 @ 17:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Controller.C 
Log Message:
Missing newline on warning message.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1150	Mon Apr  1 23:24:32 2002
   Repository revision:	1.1150	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 1, 19102 @ 17:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Lattice.h NamdTypes.h PatchMgr.C Sequencer.C WorkDistrib.C 
Log Message:
Changes to handle fixed atoms outside inner cell under constant pressure.


===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1021	Mon Apr  1 22:38:59 2002
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1019)
	release-2-4-beta-2       	(revision: 1.1019)
	release-2-4-beta-1       	(revision: 1.1019)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1019)
	release-2-2-beta-3       	(revision: 1.1019)
	release-2-2-beta-2       	(revision: 1.1019)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdTypes.h      	Status: Up-to-date

   Working revision:	1.1024	Mon Apr  1 22:28:52 2002
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/NamdTypes.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1023)
	release-2-4-beta-2       	(revision: 1.1023)
	release-2-4-beta-1       	(revision: 1.1020)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1018)
	release-2-2-beta-3       	(revision: 1.1018)
	release-2-2-beta-2       	(revision: 1.1018)
	release-2-2-beta-1       	(revision: 1.1018)
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1012)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1024	Mon Apr  1 23:04:15 2002
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1023)
	release-2-4-beta-2       	(revision: 1.1023)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1116	Mon Apr  1 22:49:46 2002
   Repository revision:	1.1116	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1118	Mon Apr  1 22:29:56 2002
   Repository revision:	1.1118	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 1, 19102 @ 18:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Additional changes for pressure with fixed atoms.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1117	Tue Apr  2 00:21:25 2002
   Repository revision:	1.1117	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 1, 19102 @ 18:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Controller.C 
Log Message:
Made scaling limit symmetric.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1151	Tue Apr  2 00:04:25 2002
   Repository revision:	1.1151	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 2, 19102 @ 11:20
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Controller.C HomePatch.C 
Log Message:
Fixes for MOLLY.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1152	Tue Apr  2 17:07:32 2002
   Repository revision:	1.1152	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1092	Tue Apr  2 16:53:44 2002
   Repository revision:	1.1092	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 2, 19102 @ 12:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/arch

Modified Files:
	IBM-SP.arch 
Log Message:
Eliminated mpCC/mpcc as basic compiler.


===================================================================
File: IBM-SP.arch      	Status: Up-to-date

   Working revision:	1.9	Tue Apr  2 18:49:47 2002
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.arch,v

   Existing Tags:
	release-2-4              	(revision: 1.8)
	release-2-4-beta-2       	(revision: 1.8)
	release-2-4-beta-1       	(revision: 1.8)
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.7)
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Tuesday April 2, 19102 @ 13:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	Controller.C Controller.h HomePatch.C HomePatch.h Sequencer.C 
Log Message:
Reduced amount of output due to margin violations.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1153	Tue Apr  2 19:15:15 2002
   Repository revision:	1.1153	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1042	Tue Apr  2 19:01:49 2002
   Repository revision:	1.1042	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1093	Tue Apr  2 19:27:50 2002
   Repository revision:	1.1093	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1034	Tue Apr  2 19:25:50 2002
   Repository revision:	1.1034	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1032)
	release-2-3-beta-1       	(revision: 1.1032)
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1118	Tue Apr  2 19:28:54 2002
   Repository revision:	1.1118	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 2, 19102 @ 14:32
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/src
In directory minsk.ks.uiuc.edu:/Home/s1/fzhu/namd/namd2/src

Modified Files:
	parm.C parm.h 
Log Message:
Modified the AMBER reader to read FORTRAN format parm files correctly


===================================================================
File: parm.C           	Status: Up-to-date

   Working revision:	1.7	Tue Apr  2 17:57:40 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/parm.C,v

   Existing Tags:
	release-2-4              	(revision: 1.6)
	release-2-4-beta-2       	(revision: 1.6)
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)

===================================================================
File: parm.h           	Status: Up-to-date

   Working revision:	1.3	Mon Apr  1 22:20:30 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/parm.h,v

   Existing Tags:
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)


****************************************
Date:	Tuesday April 2, 19102 @ 15:12
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/ug

Modified Files:
	ug_add.tex ug_start.tex 
Log Message:
Documented new features.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.39	Tue Apr  2 20:52:09 2002
   Repository revision:	1.39	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.11	Tue Apr  2 21:10:27 2002
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.10)
	release-2-3-beta-2       	(revision: 1.10)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Tuesday April 9, 19102 @ 23:34
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/src
In directory minsk.ks.uiuc.edu:/Home/s1/fzhu/namd/namd2/src

Modified Files:
	parm.C parm.h 
Log Message:
Added code to read PARM files in AMBER 7 format.


===================================================================
File: parm.C           	Status: Up-to-date

   Working revision:	1.8	Wed Apr 10 02:55:19 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/parm.C,v

   Existing Tags:
	release-2-4              	(revision: 1.6)
	release-2-4-beta-2       	(revision: 1.6)
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)

===================================================================
File: parm.h           	Status: Up-to-date

   Working revision:	1.4	Tue Apr  9 19:57:52 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/parm.h,v

   Existing Tags:
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)


****************************************
Date:	Tuesday April 9, 19102 @ 23:35
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/ug
In directory minsk.ks.uiuc.edu:/Home/s1/fzhu/namd/namd2/ug

Modified Files:
	ug_io.tex 
Log Message:
NAMD can now read PARM files in AMBER 7 format.


===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.17	Wed Apr 10 04:29:29 2002
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-4              	(revision: 1.16)
	release-2-4-beta-2       	(revision: 1.16)
	release-2-4-beta-1       	(revision: 1.16)
	release-2-3              	(revision: 1.15)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.12)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.12)
	release-2-1-beta-2       	(revision: 1.12)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Wednesday April 10, 19102 @ 14:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv17553

Modified Files:
	parm.C 
Log Message:
Fixed strcasecmp for Win32.


===================================================================
File: parm.C           	Status: Up-to-date

   Working revision:	1.9	Wed Apr 10 19:58:39 2002
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/parm.C,v

   Existing Tags:
	release-2-4              	(revision: 1.6)
	release-2-4-beta-2       	(revision: 1.6)
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)


****************************************
Date:	Thursday April 11, 19102 @ 18:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	GlobalMasterTcl.C 
Log Message:
Reincorporated parameter parsing and Tcl_Merge fixed from ComputeTcl.C.


===================================================================
File: GlobalMasterTcl.C	Status: Up-to-date

   Working revision:	1.6	Thu Apr 11 22:42:41 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.C,v

   Existing Tags:
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)


****************************************
Date:	Tuesday April 16, 19102 @ 17:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Controller.C 
Log Message:
Removed testing code.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1154	Tue Apr 16 22:12:40 2002
   Repository revision:	1.1154	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 16, 19102 @ 17:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile announce.txt notes.txt 
Log Message:
Updated version to 2.5b1.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1178	Tue Apr 16 22:13:48 2002
   Repository revision:	1.1178	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.21	Tue Apr 16 22:43:04 2002
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-4              	(revision: 1.20)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.18)
	release-2-3              	(revision: 1.17)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.36	Tue Apr 16 22:51:07 2002
   Repository revision:	1.36	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Tuesday April 16, 19102 @ 17:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	Makefile ug_intro.tex 
Log Message:
Updated version to 2.5b1.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.27	Tue Apr 16 22:13:54 2002
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.24)
	release-2-4-beta-1       	(revision: 1.21)
	release-2-3              	(revision: 1.20)
	release-2-3-beta-2       	(revision: 1.19)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.19	Tue Apr 16 22:56:11 2002
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-4              	(revision: 1.18)
	release-2-4-beta-2       	(revision: 1.18)
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.15)
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Monday April 22, 19102 @ 14:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Documented IMDignore option.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.40	Mon Apr 22 19:28:46 2002
   Repository revision:	1.40	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Monday April 22, 19102 @ 16:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/psfgen

Modified Files:
	import_tree 
Log Message:
Updates from vmd plugins tree.


===================================================================
File: import_tree      	Status: Up-to-date

   Working revision:	1.2	Mon Apr 22 21:19:37 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/import_tree,v

   Existing Tags:
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)


****************************************
Date:	Monday April 22, 19102 @ 16:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/doc
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/psfgen/doc

Modified Files:
	ug_psfgen.tex 
Log Message:
Updates from vmd plugins tree.


===================================================================
File: ug_psfgen.tex    	Status: Up-to-date

   Working revision:	1.3	Mon Apr 22 21:20:07 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/psfgen/doc/ug_psfgen.tex,v

   Existing Tags:
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)


****************************************
Date:	Monday April 22, 19102 @ 16:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/psfgen/src

Modified Files:
	memarena.c memarena.h psfgen.h stringhash.c stringhash.h 
	tcl_psfgen.c topo_defs.c topo_defs.h 
Log Message:
Updates from vmd plugins tree.


===================================================================
File: memarena.c       	Status: Up-to-date

   Working revision:	1.2	Mon Apr 22 21:20:07 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/memarena.c,v

   Existing Tags:
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)

===================================================================
File: memarena.h       	Status: Up-to-date

   Working revision:	1.2	Mon Apr 22 21:20:07 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/memarena.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)

===================================================================
File: psfgen.h         	Status: Up-to-date

   Working revision:	1.2	Mon Apr 22 21:20:07 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/psfgen.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)

===================================================================
File: stringhash.c     	Status: Up-to-date

   Working revision:	1.2	Mon Apr 22 21:20:07 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/stringhash.c,v

   Existing Tags:
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)

===================================================================
File: stringhash.h     	Status: Up-to-date

   Working revision:	1.2	Mon Apr 22 21:20:08 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/stringhash.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)

===================================================================
File: tcl_psfgen.c     	Status: Up-to-date

   Working revision:	1.4	Mon Apr 22 21:20:08 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/psfgen/src/tcl_psfgen.c,v

   Existing Tags:
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.2)

===================================================================
File: topo_defs.c      	Status: Up-to-date

   Working revision:	1.2	Mon Apr 22 21:20:08 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_defs.c,v

   Existing Tags:
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)

===================================================================
File: topo_defs.h      	Status: Up-to-date

   Working revision:	1.2	Mon Apr 22 21:20:08 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_defs.h,v

   Existing Tags:
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)


****************************************
Date:	Monday April 22, 19102 @ 17:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	parm.C 
Log Message:
Replaced exit calls with NAMD_die().


===================================================================
File: parm.C           	Status: Up-to-date

   Working revision:	1.10	Mon Apr 22 22:44:36 2002
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/parm.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.9)
	release-2-4              	(revision: 1.6)
	release-2-4-beta-2       	(revision: 1.6)
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)


****************************************
Date:	Friday April 26, 19102 @ 11:32
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/scratch/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h Molecule.C NamdState.C SimParameters.C 
	SimParameters.h WorkDistrib.C 
Log Message:
Added ability to calculate interaction energy between two groups of atoms.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1073	Thu Apr 25 20:29:24 2002
   Repository revision:	1.1073	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1048	Thu Apr 25 20:16:51 2002
   Repository revision:	1.1048	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1031	Thu Apr 25 18:03:10 2002
   Repository revision:	1.1031	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1067	Thu Apr 25 17:54:04 2002
   Repository revision:	1.1067	/home/cvs/namd/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1038	Thu Apr 25 17:57:24 2002
   Repository revision:	1.1038	/home/cvs/namd/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1031)
	release-2-3-beta-1       	(revision: 1.1029)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1029)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1148	Fri Apr 26 13:01:55 2002
   Repository revision:	1.1148	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1079	Thu Apr 25 17:46:38 2002
   Repository revision:	1.1079	/home/cvs/namd/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1119	Thu Apr 25 18:14:31 2002
   Repository revision:	1.1119	/home/cvs/namd/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday April 26, 19102 @ 11:32
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/scratch/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Added ability to calculate interaction energy between two groups of atoms.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.41	Fri Apr 26 13:17:30 2002
   Repository revision:	1.41	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday April 26, 19102 @ 17:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp6/namd2/src

Modified Files:
	HomePatch.C HomePatch.h PatchMgr.C PatchMgr.ci PatchMgr.h 
	ScriptTcl.C ScriptTcl.h WorkDistrib.C WorkDistrib.h 
Log Message:
Added reinitatoms command as precursor to trajectory loading.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1094	Fri Apr 26 21:55:49 2002
   Repository revision:	1.1094	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1035	Fri Apr 26 21:58:58 2002
   Repository revision:	1.1035	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1034)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1032)
	release-2-3-beta-1       	(revision: 1.1032)
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1025	Fri Apr 26 21:54:59 2002
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1024)
	release-2-4              	(revision: 1.1023)
	release-2-4-beta-2       	(revision: 1.1023)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.ci      	Status: Up-to-date

   Working revision:	1.1009	Fri Apr 26 21:48:29 2002
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/PatchMgr.ci,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1008)
	release-2-4              	(revision: 1.1008)
	release-2-4-beta-2       	(revision: 1.1008)
	release-2-4-beta-1       	(revision: 1.1008)
	release-2-3              	(revision: 1.1008)
	release-2-3-beta-2       	(revision: 1.1008)
	release-2-3-beta-1       	(revision: 1.1008)
	release-2-2              	(revision: 1.1008)
	release-2-2-beta-3       	(revision: 1.1008)
	release-2-2-beta-2       	(revision: 1.1008)
	release-2-2-beta-1       	(revision: 1.1008)
	release-2-1              	(revision: 1.1008)
	release-2-1-beta-4       	(revision: 1.1008)
	release-2-1-beta-3       	(revision: 1.1008)
	release-2-1-beta-2       	(revision: 1.1008)
	release-2-1-beta-1       	(revision: 1.1006)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1017	Fri Apr 26 21:42:00 2002
   Repository revision:	1.1017	/Projects/namd2/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1016)
	release-2-4              	(revision: 1.1016)
	release-2-4-beta-2       	(revision: 1.1016)
	release-2-4-beta-1       	(revision: 1.1016)
	release-2-3              	(revision: 1.1016)
	release-2-3-beta-2       	(revision: 1.1016)
	release-2-3-beta-1       	(revision: 1.1016)
	release-2-2              	(revision: 1.1016)
	release-2-2-beta-3       	(revision: 1.1016)
	release-2-2-beta-2       	(revision: 1.1016)
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.33	Fri Apr 26 22:23:14 2002
   Repository revision:	1.33	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.18	Fri Apr 26 22:16:10 2002
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.17)
	release-2-4-beta-2       	(revision: 1.17)
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.16)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1120	Fri Apr 26 22:04:37 2002
   Repository revision:	1.1120	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1029	Fri Apr 26 21:58:39 2002
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1028)
	release-2-4              	(revision: 1.1028)
	release-2-4-beta-2       	(revision: 1.1028)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1023)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday April 26, 19102 @ 20:07
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2
In directory aberdeen.ks.uiuc.edu:/scratch/namd2

Modified Files:
	Makefile 
Log Message:
Added a PLUGINS option to the Makefile.  Implemented a Tcl command "coorfile"
which reads trajectory files and resets NAMD's coordinates from the 
timesteps.  The implementation could be improved but the Tcl interface is
flexible enough to support multiple coordinate file types. 


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1179	Sat Apr 27 01:04:55 2002
   Repository revision:	1.1179	/home/cvs/namd/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday April 26, 19102 @ 20:08
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/scratch/namd2/src

Modified Files:
	ScriptTcl.C ScriptTcl.h 
Log Message:
Added a PLUGINS option to the Makefile.  Implemented a Tcl command "coorfile"
which reads trajectory files and resets NAMD's coordinates from the
timesteps.  The implementation could be improved but the Tcl interface is
flexible enough to support multiple coordinate file types.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.34	Sat Apr 27 01:04:11 2002
   Repository revision:	1.34	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.19	Sat Apr 27 01:08:33 2002
   Repository revision:	1.19	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.17)
	release-2-4-beta-2       	(revision: 1.17)
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.16)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Tuesday April 30, 19102 @ 10:29
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Parameters.C Parameters.h 
Log Message:
Cleaned up vdw_array initialization.


===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1025	Tue Apr 30 15:16:09 2002
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1024)
	release-2-4              	(revision: 1.1024)
	release-2-4-beta-2       	(revision: 1.1024)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1020)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.1013	Tue Apr 30 15:20:34 2002
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/Parameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1012)
	release-2-4              	(revision: 1.1012)
	release-2-4-beta-2       	(revision: 1.1012)
	release-2-4-beta-1       	(revision: 1.1012)
	release-2-3              	(revision: 1.1011)
	release-2-3-beta-2       	(revision: 1.1011)
	release-2-3-beta-1       	(revision: 1.1010)
	release-2-2              	(revision: 1.1009)
	release-2-2-beta-3       	(revision: 1.1009)
	release-2-2-beta-2       	(revision: 1.1009)
	release-2-2-beta-1       	(revision: 1.1009)
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 30, 19102 @ 11:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Molecule.C Molecule.h Node.C Parameters.C Parameters.h 
Log Message:
Isolated triplicate pointer/counter initialization code in constructors.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1068	Tue Apr 30 16:17:48 2002
   Repository revision:	1.1068	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1043	Tue Apr 30 16:11:01 2002
   Repository revision:	1.1043	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1040)
	release-2-4-beta-2       	(revision: 1.1040)
	release-2-4-beta-1       	(revision: 1.1038)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1034)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1067	Tue Apr 30 16:14:36 2002
   Repository revision:	1.1067	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1066)
	release-2-4-beta-2       	(revision: 1.1066)
	release-2-4-beta-1       	(revision: 1.1066)
	release-2-3              	(revision: 1.1063)
	release-2-3-beta-2       	(revision: 1.1063)
	release-2-3-beta-1       	(revision: 1.1062)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1057)
	release-2-2-beta-1       	(revision: 1.1057)
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1026	Tue Apr 30 16:16:20 2002
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1024)
	release-2-4              	(revision: 1.1024)
	release-2-4-beta-2       	(revision: 1.1024)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1020)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.h     	Status: Up-to-date

   Working revision:	1.1014	Tue Apr 30 16:08:54 2002
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/Parameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1012)
	release-2-4              	(revision: 1.1012)
	release-2-4-beta-2       	(revision: 1.1012)
	release-2-4-beta-1       	(revision: 1.1012)
	release-2-3              	(revision: 1.1011)
	release-2-3-beta-2       	(revision: 1.1011)
	release-2-3-beta-1       	(revision: 1.1010)
	release-2-2              	(revision: 1.1009)
	release-2-2-beta-3       	(revision: 1.1009)
	release-2-2-beta-2       	(revision: 1.1009)
	release-2-2-beta-1       	(revision: 1.1009)
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 30, 19102 @ 18:09
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Controller.C WorkDistrib.C 
Log Message:
Don't bother computing bonded interactions when pairInteraction is active.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1155	Tue Apr 30 23:05:46 2002
   Repository revision:	1.1155	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1121	Tue Apr 30 23:03:08 2002
   Repository revision:	1.1121	/home/cvs/namd/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday April 30, 19102 @ 18:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Fixed atom lookup to work with AMBER and GROMACS files too.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1069	Tue Apr 30 23:16:49 2002
   Repository revision:	1.1069	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday May 1, 19102 @ 16:49
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2
In directory hanoi:/tmp/cvs-serv19209

Modified Files:
	Makefile 
Log Message:
now use +tracemode all to generate both projections and summary logs, this is now becoming the standard way of generating log files for projections tool.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1180	Wed May  1 21:49:31 2002
   Repository revision:	1.1180	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday May 1, 19102 @ 16:52
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv19249

Added Files:
	Tru64-Alpha-ELAN-CC.arch 
Log Message:
elan version.


===================================================================
File: Tru64-Alpha-ELAN-CC.arch	Status: Up-to-date

   Working revision:	1.1	Wed May  1 21:52:54 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-ELAN-CC.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday May 2, 19102 @ 15:00
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002

Log Message:


Status:

Vendor Tag:	base
Release Tags:	empty
		
cvs: ERROR: cannot mkdir /Projects/namd2/cvsroot/namd-sc2002/namd-sc2002 -- not added: No such file or directory

No conflicts created by this import


[input file was '-']

****************************************
Date:	Thursday May 2, 19102 @ 15:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Log Message:


Status:

Vendor Tag:	none
Release Tags:	base
		

No conflicts created by this import


[input file was '-']

****************************************
Date:	Thursday May 2, 19102 @ 15:29
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002/FIGS
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002/FIGS

Log Message:
Directory /Projects/namd2/cvsroot/namd-sc2002/FIGS added to the repository


[input file was '-']

****************************************
Date:	Thursday May 2, 19102 @ 15:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Added Files:
	Makefile abstract.tex future.tex intro.tex lemieux.tex 
	main.tex mdintro.tex namd.bib namdpar.tex namdpme.tex 
	results.tex title.tex 
Log Message:
First version.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:04:49 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: abstract.tex     	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:04:55 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/abstract.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: future.tex       	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:16:35 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/future.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: intro.tex        	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:04:55 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/intro.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:26:11 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: main.tex         	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:26:46 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/main.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mdintro.tex      	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:24:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/mdintro.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namd.bib         	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:17:35 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/namd.bib,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpar.tex      	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:04:55 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/namdpar.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:04:55 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:04:55 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: title.tex        	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:04:55 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/title.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday May 2, 19102 @ 15:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002/FIGS
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002/FIGS

Added Files:
	namd_all.pdf namd_t3e.pdf namd_tcs.pdf patch.pdf sizes.pdf 
Log Message:
First version.


===================================================================
File: namd_all.pdf     	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:05:16 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/FIGS/namd_all.pdf,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namd_t3e.pdf     	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:05:16 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/FIGS/namd_t3e.pdf,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namd_tcs.pdf     	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:05:16 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/FIGS/namd_tcs.pdf,v

   Existing Tags:
	No Tags Exist

===================================================================
File: patch.pdf        	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:05:16 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/FIGS/patch.pdf,v

   Existing Tags:
	No Tags Exist

===================================================================
File: sizes.pdf        	Status: Up-to-date

   Working revision:	1.1	Thu May  2 20:05:18 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/FIGS/sizes.pdf,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday May 2, 19102 @ 22:12
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	main.tex 
Added Files:
	acks.tex 
Log Message:
added acks


===================================================================
File: acks.tex         	Status: Up-to-date

   Working revision:	1.1	Fri May  3 03:10:05 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/acks.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: main.tex         	Status: Up-to-date

   Working revision:	1.2	Fri May  3 03:09:58 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/main.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday May 2, 19102 @ 22:55
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	Makefile abstract.tex namd.bib 
Log Message:



===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.2	Fri May  3 03:53:29 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: abstract.tex     	Status: Up-to-date

   Working revision:	1.2	Fri May  3 03:39:02 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/abstract.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namd.bib         	Status: Up-to-date

   Working revision:	1.2	Fri May  3 03:53:59 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/namd.bib,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday May 2, 19102 @ 23:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	abstract.tex 
Log Message:
updated


===================================================================
File: abstract.tex     	Status: Up-to-date

   Working revision:	1.3	Fri May  3 04:23:28 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/abstract.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday May 2, 19102 @ 23:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	abstract.tex 
Log Message:
2000 -> 2048


===================================================================
File: abstract.tex     	Status: Up-to-date

   Working revision:	1.4	Fri May  3 04:24:52 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd-sc2002/abstract.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday May 2, 19102 @ 23:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	namdpar.tex 
Log Message:
removed old results


===================================================================
File: namdpar.tex      	Status: Up-to-date

   Working revision:	1.2	Fri May  3 04:27:44 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/namdpar.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 0:07
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002

Modified Files:
	Makefile lemieux.tex 
Log Message:
Adding lemieux.tex


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.3	Fri May  3 05:02:47 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.2	Fri May  3 05:02:05 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 0:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	results.tex 
Log Message:
described benchmarks, added op counts


===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.2	Fri May  3 05:08:41 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 0:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	title.tex 
Log Message:
added sameer


===================================================================
File: title.tex        	Status: Up-to-date

   Working revision:	1.2	Fri May  3 05:10:28 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/title.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 0:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	results.tex 
Log Message:
new numbers


===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.3	Fri May  3 05:26:22 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 0:59
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	namdpme.tex 
Log Message:
more details


===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.2	Fri May  3 05:57:05 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 12:39
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002

Modified Files:
	lemieux.tex 
Log Message:
Commting sanjaya suggested changes 


===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.3	Fri May  3 17:36:37 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 14:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	Makefile 
Log Message:
added lemieux.tex


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.4	Fri May  3 18:35:22 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd-sc2002/Makefile,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 15:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	namdpar.tex namdpme.tex title.tex 
Log Message:
tweaks



===================================================================
File: namdpar.tex      	Status: Up-to-date

   Working revision:	1.3	Fri May  3 20:24:27 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/namdpar.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.3	Fri May  3 20:20:51 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: title.tex        	Status: Up-to-date

   Working revision:	1.3	Fri May  3 20:14:44 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/title.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 15:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	abstract.tex lemieux.tex results.tex 
Log Message:
tweaks


===================================================================
File: abstract.tex     	Status: Up-to-date

   Working revision:	1.5	Fri May  3 20:29:17 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd-sc2002/abstract.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.4	Fri May  3 20:28:51 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.4	Fri May  3 20:29:37 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 15:42
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	mdintro.tex namdpar.tex namdpme.tex 
Log Message:
shortened by removing text


===================================================================
File: mdintro.tex      	Status: Up-to-date

   Working revision:	1.2	Fri May  3 20:33:07 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/mdintro.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpar.tex      	Status: Up-to-date

   Working revision:	1.4	Fri May  3 20:36:37 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd-sc2002/namdpar.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.4	Fri May  3 20:38:19 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 15:52
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory hanoi:/tmp/cvs-serv23648

Modified Files:
	namdpar.tex 
Log Message:
minor spell check errors.


===================================================================
File: namdpar.tex      	Status: Up-to-date

   Working revision:	1.5	Fri May  3 20:52:21 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd-sc2002/namdpar.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 15:54
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory hanoi:/tmp/cvs-serv23676

Modified Files:
	namdpme.tex 
Log Message:
spell check


===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.5	Fri May  3 20:54:02 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 16:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	main.tex 
Log Message:
fixed Lemieux


===================================================================
File: main.tex         	Status: Up-to-date

   Working revision:	1.3	Fri May  3 21:04:23 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/main.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 16:18
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002

Modified Files:
	lemieux.tex 
Log Message:
modifying table


===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.5	Fri May  3 21:17:21 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 16:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	acks.tex 
Log Message:
added text


===================================================================
File: acks.tex         	Status: Up-to-date

   Working revision:	1.2	Fri May  3 21:16:30 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/acks.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 16:39
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002

Modified Files:
	lemieux.tex 
Log Message:
adding correct 4 processor data


===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.6	Fri May  3 21:36:34 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 16:51
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002

Modified Files:
	lemieux.tex 
Log Message:
adding 1536 processor results


===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.7	Fri May  3 21:50:59 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 17:20
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002

Modified Files:
	namd.bib 
Log Message:
adding elan paper


===================================================================
File: namd.bib         	Status: Up-to-date

   Working revision:	1.3	Fri May  3 21:12:42 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/namd.bib,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 17:41
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002

Modified Files:
	lemieux.tex namd.bib namdpar.tex 
Log Message:
adding load balancer references and two elan references


===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.8	Fri May  3 22:36:42 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namd.bib         	Status: Up-to-date

   Working revision:	1.4	Fri May  3 22:40:11 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd-sc2002/namd.bib,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpar.tex      	Status: Up-to-date

   Working revision:	1.6	Fri May  3 22:28:24 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd-sc2002/namdpar.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 20:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	lemieux.tex results.tex 
Log Message:
tables done


===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.9	Sat May  4 01:53:21 2002
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.5	Sat May  4 01:56:11 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 21:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	lemieux.tex namd.bib results.tex 
Log Message:
cites and tweaks


===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.10	Sat May  4 02:24:24 2002
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namd.bib         	Status: Up-to-date

   Working revision:	1.5	Sat May  4 02:14:48 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd-sc2002/namd.bib,v

   Existing Tags:
	No Tags Exist

===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.6	Sat May  4 02:24:10 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 21:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	lemieux.tex namdpme.tex results.tex 
Log Message:
tweaks


===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.11	Sat May  4 02:28:16 2002
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.6	Sat May  4 02:45:20 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.7	Sat May  4 02:37:09 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 21:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	main.tex 
Added Files:
	journals_short.bib 
Log Message:
Missing journal names!!!


===================================================================
File: journals_short.bib	Status: Up-to-date

   Working revision:	1.1	Fri May  3 03:44:32 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/journals_short.bib,v

   Existing Tags:
	No Tags Exist

===================================================================
File: main.tex         	Status: Up-to-date

   Working revision:	1.4	Sat May  4 02:57:27 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd-sc2002/main.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 22:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	namdpar.tex namdpme.tex results.tex 
Log Message:
kale changes


===================================================================
File: namdpar.tex      	Status: Up-to-date

   Working revision:	1.7	Sat May  4 03:33:58 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd-sc2002/namdpar.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.7	Sat May  4 03:36:50 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.8	Sat May  4 03:42:26 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 22:55
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	results.tex 
Log Message:
small kale tweaks


===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.9	Sat May  4 03:51:15 2002
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 3, 19102 @ 23:01
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Added Files:
	submitted.pdf 
Log Message:
PDF version as submitted on May 3, 2002.


===================================================================
File: submitted.pdf    	Status: Up-to-date

   Working revision:	1.1	Sat May  4 03:51:24 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/submitted.pdf,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Saturday May 4, 19102 @ 14:41
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputePme.h 
Log Message:
Changed PME_MAX_EVALS to 15 to correspond with the maximum number of grids.


===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.18	Sat May  4 19:24:45 2002
   Repository revision:	1.18	/home/cvs/namd/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.17)
	release-2-4-beta-2       	(revision: 1.16)
	release-2-4-beta-1       	(revision: 1.14)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Sunday May 5, 19102 @ 2:01
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	PatchMgr.C 
Log Message:
Fixed memory leak in reinitAtoms code path revealed by new pair interaction
feature.


===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1026	Sun May  5 06:38:54 2002
   Repository revision:	1.1026	/home/cvs/namd/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1024)
	release-2-4              	(revision: 1.1023)
	release-2-4-beta-2       	(revision: 1.1023)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday May 6, 19102 @ 15:14
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeAngles.C ComputeAngles.h ComputeBonds.C ComputeBonds.h 
	ComputeDihedrals.C ComputeDihedrals.h ComputeHomeTuples.h 
	ComputeImpropers.C ComputeImpropers.h ComputeSelfTuples.h 
Log Message:
Made LES apply to nonbonded interactions.


===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1022	Mon May  6 16:16:45 2002
   Repository revision:	1.1022	/home/cvs/namd/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1021)
	release-2-4              	(revision: 1.1021)
	release-2-4-beta-2       	(revision: 1.1021)
	release-2-4-beta-1       	(revision: 1.1021)
	release-2-3              	(revision: 1.1021)
	release-2-3-beta-2       	(revision: 1.1021)
	release-2-3-beta-1       	(revision: 1.1021)
	release-2-2              	(revision: 1.1021)
	release-2-2-beta-3       	(revision: 1.1021)
	release-2-2-beta-2       	(revision: 1.1021)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1018	Mon May  6 16:16:27 2002
   Repository revision:	1.1018	/home/cvs/namd/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1017)
	release-2-4              	(revision: 1.1017)
	release-2-4-beta-2       	(revision: 1.1017)
	release-2-4-beta-1       	(revision: 1.1017)
	release-2-3              	(revision: 1.1017)
	release-2-3-beta-2       	(revision: 1.1017)
	release-2-3-beta-1       	(revision: 1.1017)
	release-2-2              	(revision: 1.1017)
	release-2-2-beta-3       	(revision: 1.1017)
	release-2-2-beta-2       	(revision: 1.1017)
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1018	Mon May  6 16:41:05 2002
   Repository revision:	1.1018	/home/cvs/namd/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1017)
	release-2-4              	(revision: 1.1017)
	release-2-4-beta-2       	(revision: 1.1017)
	release-2-4-beta-1       	(revision: 1.1017)
	release-2-3              	(revision: 1.1017)
	release-2-3-beta-2       	(revision: 1.1017)
	release-2-3-beta-1       	(revision: 1.1017)
	release-2-2              	(revision: 1.1017)
	release-2-2-beta-3       	(revision: 1.1017)
	release-2-2-beta-2       	(revision: 1.1017)
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1014)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1016	Mon May  6 16:15:51 2002
   Repository revision:	1.1016	/home/cvs/namd/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1015)
	release-2-4              	(revision: 1.1015)
	release-2-4-beta-2       	(revision: 1.1015)
	release-2-4-beta-1       	(revision: 1.1015)
	release-2-3              	(revision: 1.1015)
	release-2-3-beta-2       	(revision: 1.1015)
	release-2-3-beta-1       	(revision: 1.1015)
	release-2-2              	(revision: 1.1015)
	release-2-2-beta-3       	(revision: 1.1015)
	release-2-2-beta-2       	(revision: 1.1015)
	release-2-2-beta-1       	(revision: 1.1014)
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1023	Mon May  6 16:17:09 2002
   Repository revision:	1.1023	/home/cvs/namd/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1022)
	release-2-4              	(revision: 1.1022)
	release-2-4-beta-2       	(revision: 1.1022)
	release-2-4-beta-1       	(revision: 1.1022)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1021)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1016)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1015	Mon May  6 16:16:54 2002
   Repository revision:	1.1015	/home/cvs/namd/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1014)
	release-2-4              	(revision: 1.1014)
	release-2-4-beta-2       	(revision: 1.1014)
	release-2-4-beta-1       	(revision: 1.1014)
	release-2-3              	(revision: 1.1014)
	release-2-3-beta-2       	(revision: 1.1014)
	release-2-3-beta-1       	(revision: 1.1014)
	release-2-2              	(revision: 1.1014)
	release-2-2-beta-3       	(revision: 1.1014)
	release-2-2-beta-2       	(revision: 1.1014)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1034	Mon May  6 20:01:07 2002
   Repository revision:	1.1034	/home/cvs/namd/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1033)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1033)
	release-2-3-beta-2       	(revision: 1.1033)
	release-2-3-beta-1       	(revision: 1.1033)
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1021	Mon May  6 16:17:52 2002
   Repository revision:	1.1021	/home/cvs/namd/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1020)
	release-2-4              	(revision: 1.1020)
	release-2-4-beta-2       	(revision: 1.1020)
	release-2-4-beta-1       	(revision: 1.1020)
	release-2-3              	(revision: 1.1020)
	release-2-3-beta-2       	(revision: 1.1020)
	release-2-3-beta-1       	(revision: 1.1020)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1015	Mon May  6 16:17:40 2002
   Repository revision:	1.1015	/home/cvs/namd/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1014)
	release-2-4              	(revision: 1.1014)
	release-2-4-beta-2       	(revision: 1.1014)
	release-2-4-beta-1       	(revision: 1.1014)
	release-2-3              	(revision: 1.1014)
	release-2-3-beta-2       	(revision: 1.1014)
	release-2-3-beta-1       	(revision: 1.1014)
	release-2-2              	(revision: 1.1014)
	release-2-2-beta-3       	(revision: 1.1014)
	release-2-2-beta-2       	(revision: 1.1014)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeSelfTuples.h	Status: Up-to-date

   Working revision:	1.6	Mon May  6 19:56:27 2002
   Repository revision:	1.6	/home/cvs/namd/cvsroot/namd2/src/ComputeSelfTuples.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.4)


****************************************
Date:	Monday May 6, 19102 @ 17:30
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeNonbondedBase.h Molecule.C NamdState.C 
Log Message:
LES scaling must now be at least as large as the highest numbered image
in the LESFile; additional images cannot be present.  


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1074	Mon May  6 21:54:46 2002
   Repository revision:	1.1074	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1070	Mon May  6 21:59:58 2002
   Repository revision:	1.1070	/home/cvs/namd/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1039	Mon May  6 21:59:15 2002
   Repository revision:	1.1039	/home/cvs/namd/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1031)
	release-2-3-beta-1       	(revision: 1.1029)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1029)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday May 6, 19102 @ 17:30
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Updated LES docs to specify that lesFactor must coincide with the number of
LES images.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.42	Mon May  6 22:19:46 2002
   Repository revision:	1.42	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Tuesday May 7, 19102 @ 8:33
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeHomeTuples.h ComputeSelfTuples.h 
Log Message:
Oops, don't check FEP flags unless LES is turned on.


===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1035	Tue May  7 13:29:06 2002
   Repository revision:	1.1035	/home/cvs/namd/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1033)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1033)
	release-2-3-beta-2       	(revision: 1.1033)
	release-2-3-beta-1       	(revision: 1.1033)
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeSelfTuples.h	Status: Up-to-date

   Working revision:	1.7	Tue May  7 13:29:45 2002
   Repository revision:	1.7	/home/cvs/namd/cvsroot/namd2/src/ComputeSelfTuples.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.4)


****************************************
Date:	Tuesday May 7, 19102 @ 10:47
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Remove debugging statements.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1071	Tue May  7 14:20:09 2002
   Repository revision:	1.1071	/home/cvs/namd/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday May 7, 19102 @ 13:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Patch.C Patch.h 
Log Message:
Fixed uninitialized static patchMap pointer.


===================================================================
File: Patch.C          	Status: Up-to-date

   Working revision:	1.1040	Tue May  7 18:49:58 2002
   Repository revision:	1.1040	/Projects/namd2/cvsroot/namd2/src/Patch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1039)
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1039)
	release-2-4-beta-1       	(revision: 1.1039)
	release-2-3              	(revision: 1.1038)
	release-2-3-beta-2       	(revision: 1.1038)
	release-2-3-beta-1       	(revision: 1.1038)
	release-2-2              	(revision: 1.1038)
	release-2-2-beta-3       	(revision: 1.1038)
	release-2-2-beta-2       	(revision: 1.1038)
	release-2-2-beta-1       	(revision: 1.1038)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1029)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1025)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1020	Tue May  7 18:49:07 2002
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1019)
	release-2-4              	(revision: 1.1019)
	release-2-4-beta-2       	(revision: 1.1019)
	release-2-4-beta-1       	(revision: 1.1019)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1019)
	release-2-2-beta-3       	(revision: 1.1019)
	release-2-2-beta-2       	(revision: 1.1019)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1012)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday May 10, 19102 @ 20:09
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ScriptTcl.C 
Log Message:
Added a "coorfile skip" command, which is much faster than distributing
all the atoms to the rest of the system and then not doing anything with
them.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.35	Sat May 11 00:51:18 2002
   Repository revision:	1.35	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Saturday May 11, 19102 @ 18:39
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h Controller.C SimParameters.C 
	SimParameters.h WorkDistrib.C 
Log Message:
When enabled, pair interaction energy calculation now take place alongside 
regular calculations by default.  The optional parameter pairInteractionOnly
switches off non-pair interactions.  Pair interaction energies are now 
reported in a new column, PAIR_VDW and PAIR_ELECT.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1075	Sat May 11 23:26:24 2002
   Repository revision:	1.1075	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1049	Sat May 11 23:20:54 2002
   Repository revision:	1.1049	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1032	Sat May 11 23:12:29 2002
   Repository revision:	1.1032	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1156	Sat May 11 22:45:08 2002
   Repository revision:	1.1156	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1149	Sat May 11 23:08:21 2002
   Repository revision:	1.1149	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1080	Sat May 11 23:02:55 2002
   Repository revision:	1.1080	/home/cvs/namd/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1122	Sat May 11 23:08:28 2002
   Repository revision:	1.1122	/home/cvs/namd/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday May 11, 19102 @ 18:39
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Added docs for new pair interaction features.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.43	Sat May 11 23:34:39 2002
   Repository revision:	1.43	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Monday May 13, 19102 @ 15:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp6/namd2/src

Modified Files:
	Lattice.h 
Log Message:
Fixed wrapNearest to work for more general cells.


===================================================================
File: Lattice.h        	Status: Up-to-date

   Working revision:	1.1022	Mon May 13 20:26:08 2002
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/Lattice.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1021)
	release-2-4              	(revision: 1.1019)
	release-2-4-beta-2       	(revision: 1.1019)
	release-2-4-beta-1       	(revision: 1.1019)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1019)
	release-2-2-beta-3       	(revision: 1.1019)
	release-2-2-beta-2       	(revision: 1.1019)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday May 14, 19102 @ 17:36
Author:	ilya

Update of /Projects/namd2/cvsroot/namd2/src
In directory berlin.ks.uiuc.edu:/Projects/ilya/atpase/93_NAMD_localdrag/namd2/src

Modified Files:
	Molecule.C Molecule.h NamdState.C Sequencer.C SimParameters.C 
	SimParameters.h 
Log Message:
Changed atom dragging protocol and interface -- Ilya


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1072	Tue May 14 22:35:12 2002
   Repository revision:	1.1072	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1044	Tue May 14 22:35:12 2002
   Repository revision:	1.1044	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1040)
	release-2-4-beta-2       	(revision: 1.1040)
	release-2-4-beta-1       	(revision: 1.1038)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1034)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1040	Tue May 14 22:35:12 2002
   Repository revision:	1.1040	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1031)
	release-2-3-beta-1       	(revision: 1.1029)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1029)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1119	Tue May 14 22:35:12 2002
   Repository revision:	1.1119	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1150	Tue May 14 22:35:12 2002
   Repository revision:	1.1150	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1081	Tue May 14 22:35:12 2002
   Repository revision:	1.1081	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday May 15, 19102 @ 17:55
Author:	ilya

Update of /Projects/namd2/cvsroot/namd2/src
In directory berlin.ks.uiuc.edu:/Projects/ilya/atpase/93_NAMD_localdrag/namd2/src

Modified Files:
	Sequencer.C SimParameters.C SimParameters.h 
Log Message:
added global velocity parameter to moving and rotating drag. values read
from PDB files are now scaling factors.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1120	Wed May 15 22:35:55 2002
   Repository revision:	1.1120	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1151	Wed May 15 22:28:14 2002
   Repository revision:	1.1151	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1082	Wed May 15 22:33:17 2002
   Repository revision:	1.1082	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday May 15, 19102 @ 18:46
Author:	ilya

Update of /Projects/namd2/cvsroot/namd2/src
In directory berlin.ks.uiuc.edu:/Projects/ilya/atpase/93_NAMD_localdrag/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
tested the dragging code, minor improvements -- Ilya


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1121	Wed May 15 23:36:11 2002
   Repository revision:	1.1121	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday May 17, 19102 @ 13:30
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h Controller.C ReductionMgr.h 
Log Message:
Added force output to pair interaction calculations, and reformatted the
pair interaction output so that it appears in its own line in stdout.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1076	Fri May 17 17:53:32 2002
   Repository revision:	1.1076	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1050	Fri May 17 16:13:35 2002
   Repository revision:	1.1050	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1033	Fri May 17 16:11:07 2002
   Repository revision:	1.1033	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1157	Fri May 17 17:54:56 2002
   Repository revision:	1.1157	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1028	Fri May 17 16:42:49 2002
   Repository revision:	1.1028	/home/cvs/namd/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1027)
	release-2-4              	(revision: 1.1026)
	release-2-4-beta-2       	(revision: 1.1026)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1025)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday May 17, 19102 @ 13:30
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Updates for forces and new format in pair interaction calculations.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.44	Fri May 17 18:28:40 2002
   Repository revision:	1.44	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday May 17, 19102 @ 14:42
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h Controller.C ReductionMgr.h 
Log Message:
Added virial calculation to pair interaction. 


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1077	Fri May 17 19:37:47 2002
   Repository revision:	1.1077	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1051	Fri May 17 19:25:11 2002
   Repository revision:	1.1051	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1034	Fri May 17 18:58:46 2002
   Repository revision:	1.1034	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1158	Fri May 17 19:23:58 2002
   Repository revision:	1.1158	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1029	Fri May 17 18:58:24 2002
   Repository revision:	1.1029	/home/cvs/namd/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1027)
	release-2-4              	(revision: 1.1026)
	release-2-4-beta-2       	(revision: 1.1026)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1025)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday May 17, 19102 @ 14:42
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Updated docs for pair interaction to include virial.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.45	Fri May 17 19:41:26 2002
   Repository revision:	1.45	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Saturday May 18, 19102 @ 15:25
Author:	ilya

Update of /Projects/namd2/cvsroot/namd2/src
In directory berlin.ks.uiuc.edu:/Projects/ilya/atpase/93_NAMD_localdrag/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
made dragging the last operation in the integrator -- Ilya


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1122	Fri May 17 19:34:43 2002
   Repository revision:	1.1122	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday May 19, 19102 @ 17:08
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Remove a single ' to make gcc 2.96 happy.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1152	Sun May 19 22:06:26 2002
   Repository revision:	1.1152	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday May 19, 19102 @ 23:29
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h SimParameters.C SimParameters.h 
Log Message:
Added within-group pair interaction analysis.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1078	Mon May 20 04:02:36 2002
   Repository revision:	1.1078	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1052	Mon May 20 03:57:52 2002
   Repository revision:	1.1052	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1035	Mon May 20 03:57:16 2002
   Repository revision:	1.1035	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1153	Mon May 20 04:07:51 2002
   Repository revision:	1.1153	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1083	Mon May 20 03:53:51 2002
   Repository revision:	1.1083	/home/cvs/namd/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday May 19, 19102 @ 23:29
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Added docs for within-group pair interaction analysis, and corrected earlier
typos.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.46	Mon May 20 04:26:49 2002
   Repository revision:	1.46	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Monday May 20, 19102 @ 23:38
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h Controller.C Controller.h Molecule.C 
	NamdState.C SimParameters.C SimParameters.h WorkDistrib.C 
Log Message:
Pair interaction changes.  Can no longer compute pair interactions at the same
time as everything else.  Added facility for calculating within-group 
energies and virials.  Added options that allow one to specify which value in
the B column to use for the groups, so that you can use the same PDB file for
different sets of interactions.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1079	Mon May 20 22:58:04 2002
   Repository revision:	1.1079	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1053	Mon May 20 07:23:16 2002
   Repository revision:	1.1053	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1036	Mon May 20 06:59:43 2002
   Repository revision:	1.1036	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1159	Tue May 21 04:34:57 2002
   Repository revision:	1.1159	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1043	Mon May 20 07:18:50 2002
   Repository revision:	1.1043	/home/cvs/namd/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1073	Tue May 21 04:19:42 2002
   Repository revision:	1.1073	/home/cvs/namd/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1041	Mon May 20 06:24:10 2002
   Repository revision:	1.1041	/home/cvs/namd/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1031)
	release-2-3-beta-1       	(revision: 1.1029)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1029)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1154	Mon May 20 15:55:36 2002
   Repository revision:	1.1154	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1084	Mon May 20 06:19:02 2002
   Repository revision:	1.1084	/home/cvs/namd/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1123	Tue May 21 04:24:24 2002
   Repository revision:	1.1123	/home/cvs/namd/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday May 20, 19102 @ 23:57
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Updated docs for pair interaction calculations.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.47	Tue May 21 04:56:08 2002
   Repository revision:	1.47	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Wednesday May 22, 19102 @ 13:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Small fix, actually runs now.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1155	Wed May 22 18:09:26 2002
   Repository revision:	1.1155	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 23, 19102 @ 22:09
Author:	ilya

Update of /Projects/namd2/cvsroot/namd2/src
In directory seoul.ks.uiuc.edu:/Projects/ilya/atpase/93_NAMD_localdrag/namd2/src

Modified Files:
	ComputeConsForce.C ComputeConsForce.h ComputeMap.h 
	ComputeMgr.C Molecule.C Molecule.h NamdState.C Sequencer.C 
	SimParameters.C SimParameters.h WorkDistrib.C 
Log Message:
added local torqueing for atoms -- Ilya


===================================================================
File: ComputeConsForce.C	Status: Up-to-date

   Working revision:	1.2	Fri May 24 02:26:12 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeConsForce.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)

===================================================================
File: ComputeConsForce.h	Status: Up-to-date

   Working revision:	1.2	Thu May 23 23:31:19 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeConsForce.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1027	Thu May 23 21:20:35 2002
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1026)
	release-2-4              	(revision: 1.1026)
	release-2-4-beta-2       	(revision: 1.1026)
	release-2-4-beta-1       	(revision: 1.1026)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1050	Fri May 24 00:15:48 2002
   Repository revision:	1.1050	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1049)
	release-2-4              	(revision: 1.1049)
	release-2-4-beta-2       	(revision: 1.1049)
	release-2-4-beta-1       	(revision: 1.1048)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1074	Thu May 23 23:28:47 2002
   Repository revision:	1.1074	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1045	Fri May 24 00:26:06 2002
   Repository revision:	1.1045	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1040)
	release-2-4-beta-2       	(revision: 1.1040)
	release-2-4-beta-1       	(revision: 1.1038)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1034)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1042	Thu May 23 21:53:00 2002
   Repository revision:	1.1042	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1031)
	release-2-3-beta-1       	(revision: 1.1029)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1029)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1123	Fri May 24 00:10:05 2002
   Repository revision:	1.1123	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1156	Thu May 23 21:39:51 2002
   Repository revision:	1.1156	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1085	Thu May 23 21:56:26 2002
   Repository revision:	1.1085	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1124	Thu May 23 21:20:10 2002
   Repository revision:	1.1124	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 30, 19102 @ 13:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	common.C dcdlib.C 
Log Message:
Fixed NAMD_write to handle interrupts gracefully.


===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1038	Thu May 30 17:49:39 2002
   Repository revision:	1.1038	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1037)
	release-2-4-beta-2       	(revision: 1.1037)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1036)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1035)
	release-2-2-beta-3       	(revision: 1.1035)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.20	Thu May 30 17:48:01 2002
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.19)
	release-2-4              	(revision: 1.19)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.19)
	release-2-3              	(revision: 1.19)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Monday June 3, 19102 @ 15:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	dcdlib.C 
Log Message:
fixed warning about testing for unsigned < 0


===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.21	Mon Jun  3 20:16:20 2002
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.19)
	release-2-4              	(revision: 1.19)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.19)
	release-2-3              	(revision: 1.19)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Monday June 3, 19102 @ 15:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	common.C 
Log Message:
fixed testing unsigned < 0 warning in NAMD_write


===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1039	Mon Jun  3 20:26:49 2002
   Repository revision:	1.1039	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1037)
	release-2-4-beta-2       	(revision: 1.1037)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1036)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1035)
	release-2-2-beta-3       	(revision: 1.1035)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday June 3, 19102 @ 15:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	GlobalMaster.C GlobalMaster.h GlobalMasterEasy.C 
	GlobalMasterFreeEnergy.C GlobalMasterTcl.C 
Log Message:
Changed bogus "const foo::iterator" return type to "foo::const_iterator".


===================================================================
File: GlobalMaster.C   	Status: Up-to-date

   Working revision:	1.3	Mon Jun  3 20:22:15 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/GlobalMaster.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)

===================================================================
File: GlobalMaster.h   	Status: Up-to-date

   Working revision:	1.3	Mon Jun  3 20:21:02 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/GlobalMaster.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)

===================================================================
File: GlobalMasterEasy.C	Status: Up-to-date

   Working revision:	1.2	Mon Jun  3 20:23:58 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/GlobalMasterEasy.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)

===================================================================
File: GlobalMasterFreeEnergy.C	Status: Up-to-date

   Working revision:	1.2	Mon Jun  3 20:23:09 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/GlobalMasterFreeEnergy.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)

===================================================================
File: GlobalMasterTcl.C	Status: Up-to-date

   Working revision:	1.7	Mon Jun  3 20:24:35 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)


****************************************
Date:	Monday June 3, 19102 @ 18:00
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	SimParameters.C SimParameters.h 
Log Message:
Added ability to save FFTW wisdom to a file, on by default.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1157	Mon Jun  3 22:18:05 2002
   Repository revision:	1.1157	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1086	Mon Jun  3 20:12:11 2002
   Repository revision:	1.1086	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday June 3, 19102 @ 18:01
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	ug_basic.tex 
Log Message:
Added ability to save FFTW wisdom to a file, on by default.


===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.17	Mon Jun  3 22:49:08 2002
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.16)
	release-2-4              	(revision: 1.16)
	release-2-4-beta-2       	(revision: 1.16)
	release-2-4-beta-1       	(revision: 1.16)
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.16)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.11)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Tuesday June 4, 19102 @ 11:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile 
Log Message:
Added file command to release target, to check for dynamic executables.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1181	Tue Jun  4 16:15:03 2002
   Repository revision:	1.1181	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday June 4, 19102 @ 12:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv19379

Modified Files:
	common.C dcdlib.C 
Log Message:
Fixed nonexistent ssize_t on Win32.


===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1040	Tue Jun  4 17:58:58 2002
   Repository revision:	1.1040	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1037)
	release-2-4-beta-2       	(revision: 1.1037)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1036)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1035)
	release-2-2-beta-3       	(revision: 1.1035)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.22	Tue Jun  4 17:58:58 2002
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.19)
	release-2-4              	(revision: 1.19)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.19)
	release-2-3              	(revision: 1.19)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday June 11, 19102 @ 17:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	Makefile config 
Log Message:
Added support for building with plugins.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1182	Tue Jun 11 22:07:32 2002
   Repository revision:	1.1182	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.29	Tue Jun 11 21:54:31 2002
   Repository revision:	1.29	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.28)
	release-2-4              	(revision: 1.28)
	release-2-4-beta-2       	(revision: 1.28)
	release-2-4-beta-1       	(revision: 1.27)
	release-2-3              	(revision: 1.26)
	release-2-3-beta-2       	(revision: 1.26)
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Tuesday June 11, 19102 @ 17:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Added Files:
	AIX-RS6000.plugins All-Unix.plugins Darwin-PPC.plugins 
	HPUX-PA2.0.plugins HPUX.plugins IBM-SP.plugins 
	Linux-Alpha.plugins Linux-i686.plugins Origin2000.plugins 
	Solaris-Sparc.plugins T3E.plugins Tru64-Alpha.plugins 
	Win32.plugins 
Log Message:
Added support for building with plugins.


===================================================================
File: AIX-RS6000.plugins	Status: Up-to-date

   Working revision:	1.1	Tue Jun 11 22:12:12 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: All-Unix.plugins 	Status: Up-to-date

   Working revision:	1.1	Tue Jun 11 22:24:28 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/All-Unix.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Darwin-PPC.plugins	Status: Up-to-date

   Working revision:	1.1	Tue Jun 11 22:13:13 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Darwin-PPC.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX-PA2.0.plugins	Status: Up-to-date

   Working revision:	1.1	Tue Jun 11 22:13:24 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX-PA2.0.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX.plugins     	Status: Up-to-date

   Working revision:	1.1	Tue Jun 11 22:13:32 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: IBM-SP.plugins   	Status: Up-to-date

   Working revision:	1.1	Tue Jun 11 22:13:38 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-Alpha.plugins	Status: Up-to-date

   Working revision:	1.1	Tue Jun 11 22:13:49 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686.plugins	Status: Up-to-date

   Working revision:	1.1	Tue Jun 11 22:13:58 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Origin2000.plugins	Status: Up-to-date

   Working revision:	1.1	Tue Jun 11 22:14:34 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Origin2000.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Solaris-Sparc.plugins	Status: Up-to-date

   Working revision:	1.1	Tue Jun 11 22:01:15 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: T3E.plugins      	Status: Up-to-date

   Working revision:	1.1	Tue Jun 11 22:14:53 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/T3E.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Tru64-Alpha.plugins	Status: Up-to-date

   Working revision:	1.1	Tue Jun 11 22:15:02 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Win32.plugins    	Status: Up-to-date

   Working revision:	1.1	Tue Jun 11 22:20:44 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Win32.plugins,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday June 13, 19102 @ 15:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Win32.plugins 
Log Message:
Moved default Win32 plugins directory to ~/jim/plugins.


===================================================================
File: Win32.plugins    	Status: Up-to-date

   Working revision:	1.2	Thu Jun 13 20:31:56 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Win32.plugins,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday June 13, 19102 @ 16:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv16977

Modified Files:
	Makefile 
Log Message:
Added PLUGINLIB to all targets.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1183	Thu Jun 13 21:52:00 2002
   Repository revision:	1.1183	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday June 13, 19102 @ 19:30
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h Controller.C Controller.h 
	ReductionMgr.h 
Log Message:
Removed pair virial calculation; replaced with interaction forces broken down
into electrostatic and vdw contributions.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1080	Fri Jun 14 00:24:00 2002
   Repository revision:	1.1080	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1054	Fri Jun 14 00:10:47 2002
   Repository revision:	1.1054	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1037	Fri Jun 14 00:10:31 2002
   Repository revision:	1.1037	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1160	Fri Jun 14 00:10:09 2002
   Repository revision:	1.1160	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1044	Thu Jun 13 23:49:37 2002
   Repository revision:	1.1044	/home/cvs/namd/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1030	Fri Jun 14 00:10:17 2002
   Repository revision:	1.1030	/home/cvs/namd/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1027)
	release-2-4              	(revision: 1.1026)
	release-2-4-beta-2       	(revision: 1.1026)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1025)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday June 13, 19102 @ 19:30
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Removed pair virial calculation; replaced with interaction forces broken down
into electrostatic and vdw contributions.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.48	Fri Jun 14 00:27:44 2002
   Repository revision:	1.48	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Monday June 17, 19102 @ 16:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/psfgen/src

Modified Files:
	tcl_main.c tcl_psfgen.c topo_mol_output.c 
Log Message:
Safety feature - after fatal error all other commands fail until resetpsf.


===================================================================
File: tcl_main.c       	Status: Up-to-date

   Working revision:	1.2	Mon Jun 17 21:46:20 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/tcl_main.c,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)

===================================================================
File: tcl_psfgen.c     	Status: Up-to-date

   Working revision:	1.5	Mon Jun 17 21:46:20 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/psfgen/src/tcl_psfgen.c,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.2)

===================================================================
File: topo_mol_output.c	Status: Up-to-date

   Working revision:	1.3	Mon Jun 17 21:46:20 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol_output.c,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday June 20, 19102 @ 15:40
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv16191

Modified Files:
	Cygwin-i686.fftw 
Log Message:
set the fftw path as on malta.


===================================================================
File: Cygwin-i686.fftw 	Status: Up-to-date

   Working revision:	1.2	Thu Jun 20 20:39:59 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Thursday June 20, 19102 @ 15:55
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv16447

Modified Files:
	Controller.C 
Log Message:
in Controller::outputExtendedSystem(), add checking for xscFile to see if opened successfully.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1161	Thu Jun 20 20:55:11 2002
   Repository revision:	1.1161	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday June 20, 19102 @ 19:55
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex ug_sample.tex ug_start.tex 
Log Message:
Added documentation and example scripts for using the "coorfile" trajectory 
reading command.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.49	Fri Jun 21 00:48:38 2002
   Repository revision:	1.49	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_sample.tex    	Status: Up-to-date

   Working revision:	1.3	Fri Jun 21 00:49:10 2002
   Repository revision:	1.3	/home/cvs/namd/cvsroot/namd2/ug/ug_sample.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)
	release-2-1-beta-3       	(revision: 1.1)
	release-2-1-beta-2       	(revision: 1.1)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.12	Fri Jun 21 00:54:22 2002
   Repository revision:	1.12	/home/cvs/namd/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.10)
	release-2-3-beta-2       	(revision: 1.10)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Friday June 21, 19102 @ 16:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Avoid inner loop in for pair computes when outer loop found no pairs.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1081	Fri Jun 21 20:55:55 2002
   Repository revision:	1.1081	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday June 21, 19102 @ 16:38
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Moved high-latenty floating point divide forward.  (from Justin)


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1082	Fri Jun 21 21:29:22 2002
   Repository revision:	1.1082	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday June 26, 19102 @ 13:51
Author:	pgrayson

Update of /Projects/namd2/cvsroot/namd2/src
In directory irkutsk.ks.uiuc.edu:/Home/g1/pgrayson/src/namd2/src

Modified Files:
	GlobalMasterIMD.C 
Log Message:
In IMD, a zero force now causes NAMD to delete the atom from the force
list so that we don't get a bunch of (0,0,0) vectors sitting around
after a while.


===================================================================
File: GlobalMasterIMD.C	Status: Up-to-date

   Working revision:	1.2	Wed Jun 26 18:49:27 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/GlobalMasterIMD.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)


****************************************
Date:	Thursday June 27, 19102 @ 21:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Fixed missing FFTW ifdef.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1158	Fri Jun 28 02:25:43 2002
   Repository revision:	1.1158	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday June 28, 19102 @ 1:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedPair.C 
	ComputeNonbondedSelf.C ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h 
Log Message:
Added special code for single timestepping cases, now 25-40% faster!


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1083	Fri Jun 28 05:20:50 2002
   Repository revision:	1.1083	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1026	Fri Jun 28 04:16:14 2002
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1025)
	release-2-4              	(revision: 1.1025)
	release-2-4-beta-2       	(revision: 1.1025)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1024)
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1024)
	release-2-2-beta-3       	(revision: 1.1024)
	release-2-2-beta-2       	(revision: 1.1024)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1021	Fri Jun 28 03:34:48 2002
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1020)
	release-2-4              	(revision: 1.1020)
	release-2-4-beta-2       	(revision: 1.1020)
	release-2-4-beta-1       	(revision: 1.1020)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1019)
	release-2-2-beta-3       	(revision: 1.1019)
	release-2-2-beta-2       	(revision: 1.1019)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1055	Fri Jun 28 05:23:33 2002
   Repository revision:	1.1055	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1038	Fri Jun 28 05:21:07 2002
   Repository revision:	1.1038	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday July 1, 19102 @ 16:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	abstract.tex 
Log Message:
fixed ACSI -> ASCI


===================================================================
File: abstract.tex     	Status: Up-to-date

   Working revision:	1.6	Mon Jul  1 21:33:29 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd-sc2002/abstract.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 1, 19102 @ 21:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h 
Log Message:
Faster, more accurate nonbonded interpolation table.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1084	Tue Jul  2 02:00:17 2002
   Repository revision:	1.1084	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1056	Sun Jun 30 22:05:12 2002
   Repository revision:	1.1056	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1039	Sun Jun 30 17:19:46 2002
   Repository revision:	1.1039	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 2, 19102 @ 11:35
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv10834

Modified Files:
	LdbCoordinator.C 
Log Message:
in the case when trace is off at the beginning(+traceoff in the command line), only turn trace on from the first LB to the firstLdbStep after the second LB.  
i.e. from ldbCycleNum=2 to 4. This will reduce the trace for the uninteresting part of the execution.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.56	Tue Jul  2 16:35:25 2002
   Repository revision:	1.56	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Tuesday July 2, 19102 @ 18:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Separated sending and receiving processors on transpose for large-enough runs.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.53	Tue Jul  2 23:40:11 2002
   Repository revision:	1.53	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Tuesday July 2, 19102 @ 19:31
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Fixed uninitialized pairInteractionSelf.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1159	Wed Jul  3 00:29:20 2002
   Repository revision:	1.1159	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 3, 19102 @ 10:53
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory cancun:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Eliminated buffered messages by using second charge grid.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.54	Wed Jul  3 15:41:25 2002
   Repository revision:	1.54	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Friday July 5, 19102 @ 15:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory cancun:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputePme.C ComputePmeMgr.ci PmeKSpace.C PmeKSpace.h 
Log Message:
Use float rather than double for FFT.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.55	Fri Jul  5 19:52:29 2002
   Repository revision:	1.55	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePmeMgr.ci 	Status: Up-to-date

   Working revision:	1.9	Fri Jul  5 20:12:31 2002
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/ComputePmeMgr.ci,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.8)
	release-2-4              	(revision: 1.8)
	release-2-4-beta-2       	(revision: 1.8)
	release-2-4-beta-1       	(revision: 1.8)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)

===================================================================
File: PmeKSpace.C      	Status: Up-to-date

   Working revision:	1.7	Fri Jul  5 19:48:55 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/PmeKSpace.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.6)
	release-2-4-beta-2       	(revision: 1.6)
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeKSpace.h      	Status: Up-to-date

   Working revision:	1.6	Fri Jul  5 19:49:04 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/PmeKSpace.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Friday July 5, 19102 @ 15:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory cancun:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	AIX-RS6000.fftw ASCI-Red.fftw Cygwin-i686-MSVC.fftw 
	Cygwin-i686.fftw Darwin-PPC.fftw HPUX-PA2.0.fftw HPUX.fftw 
	IBM-SP.fftw Linux-Alpha.fftw Linux-i686.fftw Linux-ia64.fftw 
	Origin2000.fftw Solaris-Sparc.fftw T3E.fftw Tru64-Alpha.fftw 
	Win32.fftw 
Log Message:
Using single precision for FFT.


===================================================================
File: AIX-RS6000.fftw  	Status: Up-to-date

   Working revision:	1.5	Fri Jul  5 20:25:28 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)

===================================================================
File: ASCI-Red.fftw    	Status: Up-to-date

   Working revision:	1.3	Fri Jul  5 20:25:36 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/ASCI-Red.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)

===================================================================
File: Cygwin-i686-MSVC.fftw	Status: Up-to-date

   Working revision:	1.2	Fri Jul  5 20:25:43 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686-MSVC.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: Cygwin-i686.fftw 	Status: Up-to-date

   Working revision:	1.3	Fri Jul  5 20:25:50 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: Darwin-PPC.fftw  	Status: Up-to-date

   Working revision:	1.2	Fri Jul  5 20:25:58 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Darwin-PPC.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: HPUX-PA2.0.fftw  	Status: Up-to-date

   Working revision:	1.3	Fri Jul  5 20:26:05 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/HPUX-PA2.0.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)

===================================================================
File: HPUX.fftw        	Status: Up-to-date

   Working revision:	1.4	Fri Jul  5 20:26:12 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/HPUX.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: IBM-SP.fftw      	Status: Up-to-date

   Working revision:	1.4	Fri Jul  5 20:26:20 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)

===================================================================
File: Linux-Alpha.fftw 	Status: Up-to-date

   Working revision:	1.3	Fri Jul  5 20:26:27 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.1)

===================================================================
File: Linux-i686.fftw  	Status: Up-to-date

   Working revision:	1.5	Fri Jul  5 20:26:32 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Linux-ia64.fftw  	Status: Up-to-date

   Working revision:	1.2	Fri Jul  5 20:26:39 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: Origin2000.fftw  	Status: Up-to-date

   Working revision:	1.6	Fri Jul  5 20:26:46 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Origin2000.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Solaris-Sparc.fftw	Status: Up-to-date

   Working revision:	1.4	Fri Jul  5 20:15:36 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: T3E.fftw         	Status: Up-to-date

   Working revision:	1.5	Fri Jul  5 20:27:02 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/T3E.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Tru64-Alpha.fftw 	Status: Up-to-date

   Working revision:	1.5	Fri Jul  5 20:27:08 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Win32.fftw       	Status: Up-to-date

   Working revision:	1.5	Fri Jul  5 20:27:18 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Win32.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)


****************************************
Date:	Friday July 5, 19102 @ 16:38
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory cancun:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputePme.C ComputePme.h ComputePmeMgr.ci 
Log Message:
Eliminated lots of excess reduction data in messages.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.56	Fri Jul  5 21:25:34 2002
   Repository revision:	1.56	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.19	Fri Jul  5 20:59:19 2002
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.17)
	release-2-4-beta-2       	(revision: 1.16)
	release-2-4-beta-1       	(revision: 1.14)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputePmeMgr.ci 	Status: Up-to-date

   Working revision:	1.10	Fri Jul  5 21:02:18 2002
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ComputePmeMgr.ci,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.8)
	release-2-4              	(revision: 1.8)
	release-2-4-beta-2       	(revision: 1.8)
	release-2-4-beta-1       	(revision: 1.8)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)


****************************************
Date:	Monday July 8, 19102 @ 20:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv14233/src

Modified Files:
	ComputeNonbondedUtil.C 
Log Message:
Removed stupid debugging code that was causing crashes.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1057	Tue Jul  9 01:46:52 2002
   Repository revision:	1.1057	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 9, 19102 @ 0:37
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv18198

Modified Files:
	LdbCoordinator.C 
Log Message:
use CHARM_VERSION to disable code for old version of charm.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.57	Tue Jul  9 05:37:36 2002
   Repository revision:	1.57	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Tuesday July 9, 19102 @ 16:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Fixed fftw.h -> sfftw.h, double -> float, etc., following PME code.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1160	Tue Jul  9 21:55:11 2002
   Repository revision:	1.1160	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 10, 19102 @ 17:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	AlgSeven.C Rebalancer.C 
Log Message:
Fixed load balancer bug that was overloading final processor.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.30	Wed Jul 10 22:08:30 2002
   Repository revision:	1.30	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.29)
	release-2-4              	(revision: 1.29)
	release-2-4-beta-2       	(revision: 1.29)
	release-2-4-beta-1       	(revision: 1.29)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.35	Wed Jul 10 22:09:51 2002
   Repository revision:	1.35	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.34)
	release-2-4              	(revision: 1.34)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)


****************************************
Date:	Wednesday July 10, 19102 @ 20:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Rebalancer.C RefineOnly.C 
Log Message:
Added non-per-processor load balanced diagnostics.


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.36	Thu Jul 11 01:37:37 2002
   Repository revision:	1.36	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.34)
	release-2-4              	(revision: 1.34)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: RefineOnly.C     	Status: Up-to-date

   Working revision:	1.13	Thu Jul 11 00:28:38 2002
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/RefineOnly.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.12)
	release-2-4              	(revision: 1.12)
	release-2-4-beta-2       	(revision: 1.12)
	release-2-4-beta-1       	(revision: 1.12)
	release-2-3              	(revision: 1.12)
	release-2-3-beta-2       	(revision: 1.12)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)


****************************************
Date:	Wednesday July 10, 19102 @ 20:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	AlgSeven.C 
Log Message:
Reduced or eliminated additional proxies by prefering
one home and one proxy to two homes.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.31	Thu Jul 11 01:27:07 2002
   Repository revision:	1.31	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.29)
	release-2-4              	(revision: 1.29)
	release-2-4-beta-2       	(revision: 1.29)
	release-2-4-beta-1       	(revision: 1.29)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)


****************************************
Date:	Thursday July 11, 19102 @ 9:53
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	GlobalMasterTcl.C 
Log Message:
Check for out-of-range atomids.


===================================================================
File: GlobalMasterTcl.C	Status: Up-to-date

   Working revision:	1.8	Thu Jul 11 14:51:52 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)


****************************************
Date:	Thursday July 11, 19102 @ 19:38
Author:	sameer

Update of /Projects/namd2/cvsroot/namd2/src
In directory havana:/tmp/cvs-serv8439

Modified Files:
	BOCgroup.h BackEnd.C ComputeMgr.C ComputePme.C 
	ComputePmeMgr.ci LdbCoordinator.C Node.C PatchMgr.C 
	ProxyPatch.C WorkDistrib.C main.C main.ci 
Log Message:
commiting version of namd that works with the communication library


===================================================================
File: BOCgroup.h       	Status: Up-to-date

   Working revision:	1.1012	Fri Jul 12 00:38:16 2002
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/BOCgroup.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1011)
	release-2-4              	(revision: 1.1011)
	release-2-4-beta-2       	(revision: 1.1011)
	release-2-4-beta-1       	(revision: 1.1011)
	release-2-3              	(revision: 1.1009)
	release-2-3-beta-2       	(revision: 1.1009)
	release-2-3-beta-1       	(revision: 1.1009)
	release-2-2              	(revision: 1.1009)
	release-2-2-beta-3       	(revision: 1.1009)
	release-2-2-beta-2       	(revision: 1.1009)
	release-2-2-beta-1       	(revision: 1.1009)
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1007)
	release-2-1-beta-3       	(revision: 1.1007)
	release-2-1-beta-2       	(revision: 1.1007)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.19	Fri Jul 12 00:38:16 2002
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.18)
	release-2-4              	(revision: 1.18)
	release-2-4-beta-2       	(revision: 1.18)
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.14)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1051	Fri Jul 12 00:38:16 2002
   Repository revision:	1.1051	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1049)
	release-2-4              	(revision: 1.1049)
	release-2-4-beta-2       	(revision: 1.1049)
	release-2-4-beta-1       	(revision: 1.1048)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.57	Fri Jul 12 00:38:16 2002
   Repository revision:	1.57	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePmeMgr.ci 	Status: Up-to-date

   Working revision:	1.11	Fri Jul 12 00:38:16 2002
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ComputePmeMgr.ci,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.8)
	release-2-4              	(revision: 1.8)
	release-2-4-beta-2       	(revision: 1.8)
	release-2-4-beta-1       	(revision: 1.8)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.58	Fri Jul 12 00:38:16 2002
   Repository revision:	1.58	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1068	Fri Jul 12 00:38:16 2002
   Repository revision:	1.1068	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1066)
	release-2-4-beta-2       	(revision: 1.1066)
	release-2-4-beta-1       	(revision: 1.1066)
	release-2-3              	(revision: 1.1063)
	release-2-3-beta-2       	(revision: 1.1063)
	release-2-3-beta-1       	(revision: 1.1062)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1057)
	release-2-2-beta-1       	(revision: 1.1057)
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1027	Fri Jul 12 00:38:16 2002
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1024)
	release-2-4              	(revision: 1.1023)
	release-2-4-beta-2       	(revision: 1.1023)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1033	Fri Jul 12 00:38:16 2002
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1032)
	release-2-4              	(revision: 1.1032)
	release-2-4-beta-2       	(revision: 1.1032)
	release-2-4-beta-1       	(revision: 1.1032)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1032)
	release-2-3-beta-1       	(revision: 1.1031)
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1023)
	release-2-1-beta-4       	(revision: 1.1023)
	release-2-1-beta-3       	(revision: 1.1023)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1125	Fri Jul 12 00:38:16 2002
   Repository revision:	1.1125	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1045	Fri Jul 12 00:38:16 2002
   Repository revision:	1.1045	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1044)
	release-2-4              	(revision: 1.1044)
	release-2-4-beta-2       	(revision: 1.1044)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1044)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1040)
	release-2-2-beta-3       	(revision: 1.1040)
	release-2-2-beta-2       	(revision: 1.1040)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.1012	Fri Jul 12 00:38:16 2002
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/main.ci,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1011)
	release-2-4              	(revision: 1.1011)
	release-2-4-beta-2       	(revision: 1.1011)
	release-2-4-beta-1       	(revision: 1.1011)
	release-2-3              	(revision: 1.1010)
	release-2-3-beta-2       	(revision: 1.1010)
	release-2-3-beta-1       	(revision: 1.1010)
	release-2-2              	(revision: 1.1010)
	release-2-2-beta-3       	(revision: 1.1010)
	release-2-2-beta-2       	(revision: 1.1010)
	release-2-2-beta-1       	(revision: 1.1010)
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 11, 19102 @ 19:40
Author:	sameer

Update of /Projects/namd2/cvsroot/namd2/src
In directory havana:/tmp/cvs-serv8477

Modified Files:
	main.ci 
Log Message:
Commiting change to main.ci that disables the library by default


===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.1013	Fri Jul 12 00:40:13 2002
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/main.ci,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1011)
	release-2-4              	(revision: 1.1011)
	release-2-4-beta-2       	(revision: 1.1011)
	release-2-4-beta-1       	(revision: 1.1011)
	release-2-3              	(revision: 1.1010)
	release-2-3-beta-2       	(revision: 1.1010)
	release-2-3-beta-1       	(revision: 1.1010)
	release-2-2              	(revision: 1.1010)
	release-2-2-beta-3       	(revision: 1.1010)
	release-2-2-beta-2       	(revision: 1.1010)
	release-2-2-beta-1       	(revision: 1.1010)
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 11, 19102 @ 19:51
Author:	sameer

Update of /Projects/namd2/cvsroot/namd2/src
In directory havana:/tmp/cvs-serv8559

Modified Files:
	PatchMgr.C ProxyPatch.C WorkDistrib.C 
Log Message:
Adding ifdefs to not include the communications library by default


===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1028	Fri Jul 12 00:51:39 2002
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1024)
	release-2-4              	(revision: 1.1023)
	release-2-4-beta-2       	(revision: 1.1023)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1034	Fri Jul 12 00:51:39 2002
   Repository revision:	1.1034	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1032)
	release-2-4              	(revision: 1.1032)
	release-2-4-beta-2       	(revision: 1.1032)
	release-2-4-beta-1       	(revision: 1.1032)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1032)
	release-2-3-beta-1       	(revision: 1.1031)
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1023)
	release-2-1-beta-4       	(revision: 1.1023)
	release-2-1-beta-3       	(revision: 1.1023)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1126	Fri Jul 12 00:51:39 2002
   Repository revision:	1.1126	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 18, 19102 @ 16:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv14147

Modified Files:
	InfoStream.C InfoStream.h 
Log Message:
Moved things to non-inline to avoid breaking the Intel IA64 compiler.


===================================================================
File: InfoStream.C     	Status: Up-to-date

   Working revision:	1.1007	Thu Jul 18 21:24:53 2002
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/InfoStream.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1006)
	release-2-4              	(revision: 1.1006)
	release-2-4-beta-2       	(revision: 1.1006)
	release-2-4-beta-1       	(revision: 1.1006)
	release-2-3              	(revision: 1.1006)
	release-2-3-beta-2       	(revision: 1.1006)
	release-2-3-beta-1       	(revision: 1.1006)
	release-2-2              	(revision: 1.1006)
	release-2-2-beta-3       	(revision: 1.1006)
	release-2-2-beta-2       	(revision: 1.1006)
	release-2-2-beta-1       	(revision: 1.1005)
	release-2-1              	(revision: 1.1004)
	release-2-1-beta-4       	(revision: 1.1004)
	release-2-1-beta-3       	(revision: 1.1004)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1011	Thu Jul 18 21:24:53 2002
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/InfoStream.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1010)
	release-2-4              	(revision: 1.1010)
	release-2-4-beta-2       	(revision: 1.1010)
	release-2-4-beta-1       	(revision: 1.1010)
	release-2-3              	(revision: 1.1010)
	release-2-3-beta-2       	(revision: 1.1010)
	release-2-3-beta-1       	(revision: 1.1009)
	release-2-2              	(revision: 1.1008)
	release-2-2-beta-3       	(revision: 1.1008)
	release-2-2-beta-2       	(revision: 1.1008)
	release-2-2-beta-1       	(revision: 1.1008)
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 18, 19102 @ 16:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv14169

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Rewrote several loops to software pipeline on IA64.  Test fixed atoms!


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1085	Thu Jul 18 21:26:25 2002
   Repository revision:	1.1085	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 18, 19102 @ 16:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv14226

Modified Files:
	Linux-ia64-ecc.arch Linux-ia64.tcl 
Log Message:
IA64 options.


===================================================================
File: Linux-ia64-ecc.arch	Status: Up-to-date

   Working revision:	1.4	Thu Jul 18 21:28:53 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-ecc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)

===================================================================
File: Linux-ia64.tcl   	Status: Up-to-date

   Working revision:	1.2	Thu Jul 18 21:28:53 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Thursday July 18, 19102 @ 18:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv14667

Modified Files:
	InfoStream.C InfoStream.h 
Log Message:
Fixed extra semicolons.


===================================================================
File: InfoStream.C     	Status: Up-to-date

   Working revision:	1.1008	Thu Jul 18 23:51:28 2002
   Repository revision:	1.1008	/Projects/namd2/cvsroot/namd2/src/InfoStream.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1006)
	release-2-4              	(revision: 1.1006)
	release-2-4-beta-2       	(revision: 1.1006)
	release-2-4-beta-1       	(revision: 1.1006)
	release-2-3              	(revision: 1.1006)
	release-2-3-beta-2       	(revision: 1.1006)
	release-2-3-beta-1       	(revision: 1.1006)
	release-2-2              	(revision: 1.1006)
	release-2-2-beta-3       	(revision: 1.1006)
	release-2-2-beta-2       	(revision: 1.1006)
	release-2-2-beta-1       	(revision: 1.1005)
	release-2-1              	(revision: 1.1004)
	release-2-1-beta-4       	(revision: 1.1004)
	release-2-1-beta-3       	(revision: 1.1004)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1012	Thu Jul 18 23:51:28 2002
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/InfoStream.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1010)
	release-2-4              	(revision: 1.1010)
	release-2-4-beta-2       	(revision: 1.1010)
	release-2-4-beta-1       	(revision: 1.1010)
	release-2-3              	(revision: 1.1010)
	release-2-3-beta-2       	(revision: 1.1010)
	release-2-3-beta-1       	(revision: 1.1009)
	release-2-2              	(revision: 1.1008)
	release-2-2-beta-3       	(revision: 1.1008)
	release-2-2-beta-2       	(revision: 1.1008)
	release-2-2-beta-1       	(revision: 1.1008)
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 18, 19102 @ 20:29
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Rebalancer.C 
Log Message:
Removed do-nothing, O(N^2) loop!


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.37	Fri Jul 19 01:25:59 2002
   Repository revision:	1.37	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.34)
	release-2-4              	(revision: 1.34)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)


****************************************
Date:	Thursday July 18, 19102 @ 23:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Rebalancer.C Rebalancer.h 
Log Message:
Faster "short cut" method for finding destination processors.


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.38	Fri Jul 19 03:43:28 2002
   Repository revision:	1.38	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.34)
	release-2-4              	(revision: 1.34)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: Rebalancer.h     	Status: Up-to-date

   Working revision:	1.12	Fri Jul 19 02:08:54 2002
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/Rebalancer.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.11)
	release-2-4-beta-2       	(revision: 1.11)
	release-2-4-beta-1       	(revision: 1.11)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)


****************************************
Date:	Friday July 19, 19102 @ 0:01
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Alg7.h AlgSeven.C 
Log Message:
Added short cut search.


===================================================================
File: Alg7.h           	Status: Up-to-date

   Working revision:	1.3	Fri Jul 19 04:35:29 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/Alg7.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.2)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.32	Fri Jul 19 04:57:52 2002
   Repository revision:	1.32	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.29)
	release-2-4              	(revision: 1.29)
	release-2-4-beta-2       	(revision: 1.29)
	release-2-4-beta-1       	(revision: 1.29)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)


****************************************
Date:	Friday July 19, 19102 @ 17:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C WorkDistrib.C WorkDistrib.h 
Log Message:
Reordered patches to align with PME and increase grid communication locality,
possibly at the expense of patch locality, but that is fixable with some
additional reordering.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.58	Fri Jul 19 22:53:05 2002
   Repository revision:	1.58	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1127	Fri Jul 19 22:49:38 2002
   Repository revision:	1.1127	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1030	Fri Jul 19 22:03:01 2002
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1028)
	release-2-4              	(revision: 1.1028)
	release-2-4-beta-2       	(revision: 1.1028)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1023)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday July 20, 19102 @ 11:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Now sorting by all three dimensions.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1128	Sat Jul 20 16:45:11 2002
   Repository revision:	1.1128	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday July 20, 19102 @ 12:00
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	RecBisection.C 
Log Message:
Subdivide along x dimension if possible to reduces PME message count.


===================================================================
File: RecBisection.C   	Status: Up-to-date

   Working revision:	1.12	Sat Jul 20 16:50:46 2002
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/RecBisection.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.11)
	release-2-4-beta-2       	(revision: 1.11)
	release-2-4-beta-1       	(revision: 1.11)
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)


****************************************
Date:	Saturday July 20, 19102 @ 16:46
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv17256

Modified Files:
	NamdCentLB.h NamdCentLB.C 
Log Message:
add QueryDumpData() to interface with load balancer to dump load data into disk file.


===================================================================
File: NamdCentLB.h     	Status: Up-to-date

   Working revision:	1.5	Sat Jul 20 21:46:39 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.27	Sat Jul 20 21:46:39 2002
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Saturday July 20, 19102 @ 19:36
Author:	sameer

Update of /Projects/namd2/cvsroot/namd2/src
In directory havana:/tmp/cvs-serv26064

Modified Files:
	NamdCentLB.C 
Log Message:
adding code to reduce load on pme processors


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.28	Sun Jul 21 00:36:35 2002
   Repository revision:	1.28	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Sunday July 21, 19102 @ 11:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	CollectionMaster.h ComputeDPME.C ComputeDPMTA.C ComputeExt.C 
	ComputeFullDirect.C HomePatch.C Node.C Node.h PatchMap.C 
	PatchMap.h WorkDistrib.C 
Log Message:
Removed patches from node 0 when more procesors than 64 or number of patches.


===================================================================
File: CollectionMaster.h	Status: Up-to-date

   Working revision:	1.1026	Sat Jul 20 23:56:53 2002
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1025)
	release-2-4              	(revision: 1.1024)
	release-2-4-beta-2       	(revision: 1.1024)
	release-2-4-beta-1       	(revision: 1.1024)
	release-2-3              	(revision: 1.1024)
	release-2-3-beta-2       	(revision: 1.1023)
	release-2-3-beta-1       	(revision: 1.1023)
	release-2-2              	(revision: 1.1023)
	release-2-2-beta-3       	(revision: 1.1023)
	release-2-2-beta-2       	(revision: 1.1023)
	release-2-2-beta-1       	(revision: 1.1021)
	release-2-1              	(revision: 1.1020)
	release-2-1-beta-4       	(revision: 1.1020)
	release-2-1-beta-3       	(revision: 1.1020)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1013)
	release-2-0              	(revision: 1.1013)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDPME.C    	Status: Up-to-date

   Working revision:	1.23	Sat Jul 20 23:59:03 2002
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/src/ComputeDPME.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.22)
	release-2-4              	(revision: 1.22)
	release-2-4-beta-2       	(revision: 1.22)
	release-2-4-beta-1       	(revision: 1.22)
	release-2-3              	(revision: 1.22)
	release-2-3-beta-2       	(revision: 1.22)
	release-2-3-beta-1       	(revision: 1.22)
	release-2-2              	(revision: 1.22)
	release-2-2-beta-3       	(revision: 1.22)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.22)
	release-2-1              	(revision: 1.20)
	release-2-1-beta-4       	(revision: 1.20)
	release-2-1-beta-3       	(revision: 1.20)
	release-2-1-beta-2       	(revision: 1.20)
	release-2-1-beta-1       	(revision: 1.17)
	release-2-0-pre-charm-syntax	(revision: 1.10)
	release-2-0              	(revision: 1.10)
	release-2-0-beta-3       	(revision: 1.8)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ComputeDPMTA.C   	Status: Up-to-date

   Working revision:	1.1067	Sat Jul 20 23:59:51 2002
   Repository revision:	1.1067	/Projects/namd2/cvsroot/namd2/src/ComputeDPMTA.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1066)
	release-2-4-beta-2       	(revision: 1.1066)
	release-2-4-beta-1       	(revision: 1.1066)
	release-2-3              	(revision: 1.1066)
	release-2-3-beta-2       	(revision: 1.1066)
	release-2-3-beta-1       	(revision: 1.1066)
	release-2-2              	(revision: 1.1066)
	release-2-2-beta-3       	(revision: 1.1066)
	release-2-2-beta-2       	(revision: 1.1066)
	release-2-2-beta-1       	(revision: 1.1066)
	release-2-1              	(revision: 1.1063)
	release-2-1-beta-4       	(revision: 1.1063)
	release-2-1-beta-3       	(revision: 1.1063)
	release-2-1-beta-2       	(revision: 1.1063)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1054)
	release-2-0              	(revision: 1.1053)
	release-2-0-beta-3       	(revision: 1.1053)
	release-2-0-beta-2       	(revision: 1.1050)
	release-alpha-1          	(revision: 1.1047)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.1.2)

===================================================================
File: ComputeExt.C     	Status: Up-to-date

   Working revision:	1.4	Sun Jul 21 00:00:39 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeExt.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)

===================================================================
File: ComputeFullDirect.C	Status: Up-to-date

   Working revision:	1.1029	Sun Jul 21 00:01:10 2002
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/ComputeFullDirect.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1028)
	release-2-4              	(revision: 1.1028)
	release-2-4-beta-2       	(revision: 1.1028)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1028)
	release-2-2              	(revision: 1.1028)
	release-2-2-beta-3       	(revision: 1.1028)
	release-2-2-beta-2       	(revision: 1.1028)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1023)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1012)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.1.2)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1095	Sat Jul 20 23:39:14 2002
   Repository revision:	1.1095	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1069	Sat Jul 20 22:47:14 2002
   Repository revision:	1.1069	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1066)
	release-2-4-beta-2       	(revision: 1.1066)
	release-2-4-beta-1       	(revision: 1.1066)
	release-2-3              	(revision: 1.1063)
	release-2-3-beta-2       	(revision: 1.1063)
	release-2-3-beta-1       	(revision: 1.1062)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1057)
	release-2-2-beta-1       	(revision: 1.1057)
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1031	Sat Jul 20 22:47:07 2002
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1030)
	release-2-3              	(revision: 1.1030)
	release-2-3-beta-2       	(revision: 1.1030)
	release-2-3-beta-1       	(revision: 1.1030)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1028)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1031	Sat Jul 20 23:55:33 2002
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1030)
	release-2-3              	(revision: 1.1030)
	release-2-3-beta-2       	(revision: 1.1030)
	release-2-3-beta-1       	(revision: 1.1030)
	release-2-2              	(revision: 1.1028)
	release-2-2-beta-3       	(revision: 1.1028)
	release-2-2-beta-2       	(revision: 1.1028)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1020	Sat Jul 20 23:53:38 2002
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1019)
	release-2-4              	(revision: 1.1019)
	release-2-4-beta-2       	(revision: 1.1019)
	release-2-4-beta-1       	(revision: 1.1019)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1018)
	release-2-2              	(revision: 1.1018)
	release-2-2-beta-3       	(revision: 1.1018)
	release-2-2-beta-2       	(revision: 1.1018)
	release-2-2-beta-1       	(revision: 1.1018)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1016)
	release-2-1-beta-1       	(revision: 1.1014)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1129	Sun Jul 21 16:07:07 2002
   Repository revision:	1.1129	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday July 21, 19102 @ 13:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	LdbCoordinator.C LdbCoordinator.ci LdbCoordinator.h 
Log Message:
Fixed load balancer so that barrier is triggered by controller only.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.59	Sun Jul 21 18:08:51 2002
   Repository revision:	1.59	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: LdbCoordinator.ci	Status: Up-to-date

   Working revision:	1.11	Sun Jul 21 18:03:44 2002
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.ci,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.10)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.9)
	release-2-3-beta-2       	(revision: 1.9)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.2)

===================================================================
File: LdbCoordinator.h 	Status: Up-to-date

   Working revision:	1.34	Sun Jul 21 18:16:23 2002
   Repository revision:	1.34	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.33)
	release-2-4              	(revision: 1.33)
	release-2-4-beta-2       	(revision: 1.33)
	release-2-4-beta-1       	(revision: 1.33)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.32)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.32)
	release-2-2-beta-3       	(revision: 1.32)
	release-2-2-beta-2       	(revision: 1.32)
	release-2-2-beta-1       	(revision: 1.31)
	release-2-1              	(revision: 1.26)
	release-2-1-beta-4       	(revision: 1.26)
	release-2-1-beta-3       	(revision: 1.26)
	release-2-1-beta-2       	(revision: 1.26)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.23)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.17)
	development-4            	(revision: 1.11)


****************************************
Date:	Sunday July 21, 19102 @ 14:27
Author:	sameer

Update of /Projects/namd2/cvsroot/namd2/src
In directory havana:/tmp/cvs-serv3272

Modified Files:
	ComputePme.C 
Log Message:
Adding code to computePme.C to detect if a particular processor is a PME processor or not 


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.59	Sun Jul 21 19:27:33 2002
   Repository revision:	1.59	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Sunday July 21, 19102 @ 15:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv22600

Modified Files:
	NamdCentLB.C 
Log Message:
Adjusted and turned on PME node background load adjustment.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.29	Sun Jul 21 20:21:02 2002
   Repository revision:	1.29	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Sunday July 21, 19102 @ 16:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv22682

Modified Files:
	NamdCentLB.C 
Log Message:
Fixed crasher.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.30	Sun Jul 21 21:06:43 2002
   Repository revision:	1.30	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Sunday July 21, 19102 @ 16:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv22721

Modified Files:
	NamdCentLB.C 
Log Message:
Maximum background load multiplier is now 2.0.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.31	Sun Jul 21 21:22:10 2002
   Repository revision:	1.31	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Sunday July 21, 19102 @ 16:59
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv22792

Modified Files:
	NamdCentLB.C 
Log Message:
Fixed to match new (or any newer) patch distribution.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.32	Sun Jul 21 21:59:40 2002
   Repository revision:	1.32	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Monday July 22, 19102 @ 11:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C ComputePme.h ComputePmeMgr.ci NamdCentLB.C 
	WorkDistrib.C 
Log Message:
Added direct calls to ComputePme doWork and sendData.
Added barrier before sendTrans to ensure all sendGrids are complete.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.60	Mon Jul 22 15:27:03 2002
   Repository revision:	1.60	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.20	Mon Jul 22 15:22:47 2002
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.17)
	release-2-4-beta-2       	(revision: 1.16)
	release-2-4-beta-1       	(revision: 1.14)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: ComputePmeMgr.ci 	Status: Up-to-date

   Working revision:	1.12	Mon Jul 22 13:05:02 2002
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/ComputePmeMgr.ci,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.8)
	release-2-4              	(revision: 1.8)
	release-2-4-beta-2       	(revision: 1.8)
	release-2-4-beta-1       	(revision: 1.8)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.33	Mon Jul 22 12:39:01 2002
   Repository revision:	1.33	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1130	Mon Jul 22 15:54:07 2002
   Repository revision:	1.1130	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday July 22, 19102 @ 14:17
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv21104

Modified Files:
	NamdCentLB.C 
Log Message:
added QueryDumpData interface for dumping load data into disk file.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.34	Mon Jul 22 19:17:22 2002
   Repository revision:	1.34	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Monday July 22, 19102 @ 15:55
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Fixed bugs in barrier code.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.61	Mon Jul 22 20:54:42 2002
   Repository revision:	1.61	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Monday July 22, 19102 @ 16:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv25295

Modified Files:
	ComputePme.C 
Log Message:
Reimplemented isComputePme() efficiently.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.62	Mon Jul 22 21:05:23 2002
   Repository revision:	1.62	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Monday July 22, 19102 @ 16:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv25488

Modified Files:
	ComputePme.C 
Log Message:
Fix for isComputePme.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.63	Mon Jul 22 21:58:50 2002
   Repository revision:	1.63	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Monday July 22, 19102 @ 17:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv25577

Modified Files:
	AlgSeven.C Rebalancer.C 
Log Message:
Don't load PME processors if > 1000 processors.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.33	Mon Jul 22 22:19:40 2002
   Repository revision:	1.33	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.29)
	release-2-4              	(revision: 1.29)
	release-2-4-beta-2       	(revision: 1.29)
	release-2-4-beta-1       	(revision: 1.29)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.39	Mon Jul 22 22:19:40 2002
   Repository revision:	1.39	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.34)
	release-2-4              	(revision: 1.34)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)


****************************************
Date:	Monday July 22, 19102 @ 18:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Turned off barrier.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.64	Mon Jul 22 22:59:12 2002
   Repository revision:	1.64	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Tuesday July 23, 19102 @ 14:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	AlgSeven.C ComputePme.C NamdCentLB.C Rebalancer.C 
	SimParameters.C SimParameters.h 
Log Message:
Added options to turn on various load balancing test features:
  ldbBackgroundScaling <double>
  ldbPMEBackgroundScaling <double>
  ldbUnloadPME <bool>
  PMEBarrier <bool>


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.34	Tue Jul 23 16:14:12 2002
   Repository revision:	1.34	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.29)
	release-2-4              	(revision: 1.29)
	release-2-4-beta-2       	(revision: 1.29)
	release-2-4-beta-1       	(revision: 1.29)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.65	Tue Jul 23 16:17:53 2002
   Repository revision:	1.65	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.35	Tue Jul 23 16:04:04 2002
   Repository revision:	1.35	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.40	Tue Jul 23 16:13:33 2002
   Repository revision:	1.40	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.34)
	release-2-4              	(revision: 1.34)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1161	Tue Jul 23 15:52:00 2002
   Repository revision:	1.1161	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1087	Tue Jul 23 15:34:06 2002
   Repository revision:	1.1087	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 23, 19102 @ 14:54
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Output formatting fix.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1162	Tue Jul 23 19:53:20 2002
   Repository revision:	1.1162	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 23, 19102 @ 15:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Made to compile on broken compilers.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.66	Tue Jul 23 20:21:09 2002
   Repository revision:	1.66	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Tuesday July 23, 19102 @ 15:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ScriptTcl.C ScriptTcl.h mainfunc.C 
Log Message:
With Tcl can now parse multiple config files.  This is useful if you want
to switch options using the command line only.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.36	Tue Jul 23 19:48:30 2002
   Repository revision:	1.36	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.20	Tue Jul 23 19:46:54 2002
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.17)
	release-2-4-beta-2       	(revision: 1.17)
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.16)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: mainfunc.C       	Status: Up-to-date

   Working revision:	1.13	Tue Jul 23 20:29:23 2002
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/mainfunc.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.12)
	release-2-4              	(revision: 1.12)
	release-2-4-beta-2       	(revision: 1.12)
	release-2-4-beta-1       	(revision: 1.12)
	release-2-3              	(revision: 1.12)
	release-2-3-beta-2       	(revision: 1.12)
	release-2-3-beta-1       	(revision: 1.12)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.8)


****************************************
Date:	Tuesday July 23, 19102 @ 15:55
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv24164

Modified Files:
	common.h Sequencer.C Controller.C 
Log Message:
added PME_BARRIER: barrier before and after PME step. set PME_BARRIER in common.h to turn this on.


===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1037	Tue Jul 23 20:55:38 2002
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1036)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1036)
	release-2-3              	(revision: 1.1035)
	release-2-3-beta-2       	(revision: 1.1035)
	release-2-3-beta-1       	(revision: 1.1035)
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1024)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1124	Tue Jul 23 20:55:38 2002
   Repository revision:	1.1124	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1162	Tue Jul 23 20:55:38 2002
   Repository revision:	1.1162	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 23, 19102 @ 16:05
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv24279

Modified Files:
	AlgNbor.C AlgSeven.C Broadcasts.h NamdCentLB.C NamdNborLB.C 
	Rebalancer.C elements.h 
Log Message:
processorInfo has a flag(changed to available) for each processor. Use this availaibity flag to determine if compute will be assigned to that processor.


===================================================================
File: AlgNbor.C        	Status: Up-to-date

   Working revision:	1.5	Tue Jul 23 21:05:43 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/AlgNbor.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)

===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.35	Tue Jul 23 21:05:43 2002
   Repository revision:	1.35	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.29)
	release-2-4              	(revision: 1.29)
	release-2-4-beta-2       	(revision: 1.29)
	release-2-4-beta-1       	(revision: 1.29)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.14	Tue Jul 23 21:05:43 2002
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.13)
	release-2-4              	(revision: 1.13)
	release-2-4-beta-2       	(revision: 1.13)
	release-2-4-beta-1       	(revision: 1.13)
	release-2-3              	(revision: 1.13)
	release-2-3-beta-2       	(revision: 1.13)
	release-2-3-beta-1       	(revision: 1.13)
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.13)
	release-2-2-beta-2       	(revision: 1.13)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.36	Tue Jul 23 21:05:43 2002
   Repository revision:	1.36	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)

===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.14	Tue Jul 23 21:05:43 2002
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.13)
	release-2-4              	(revision: 1.13)
	release-2-4-beta-2       	(revision: 1.13)
	release-2-4-beta-1       	(revision: 1.12)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.41	Tue Jul 23 21:05:43 2002
   Repository revision:	1.41	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.34)
	release-2-4              	(revision: 1.34)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: elements.h       	Status: Up-to-date

   Working revision:	1.8	Tue Jul 23 21:05:43 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/elements.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.7)
	release-2-4              	(revision: 1.7)
	release-2-4-beta-2       	(revision: 1.7)
	release-2-4-beta-1       	(revision: 1.7)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)


****************************************
Date:	Wednesday July 24, 19102 @ 0:19
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv25397

Modified Files:
	NamdCentLB.C Rebalancer.C SimParameters.C SimParameters.h 
Log Message:
unload one rank of pe on a SMP node. added these in SimParameter:
e.g.
ldbUnloadSMP         yes       // turn this lb on
procsPerNode         4         // 4 procs per node
ldbUnloadRank        3         // the 3rd rank pe is unloaded.

fix computeAverage to exclude the unavailable pes, otherwise computeAverage won;t work correct for RefineLB, this also applys unloadPME.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.37	Wed Jul 24 05:19:33 2002
   Repository revision:	1.37	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.42	Wed Jul 24 05:19:33 2002
   Repository revision:	1.42	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.34)
	release-2-4              	(revision: 1.34)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1163	Wed Jul 24 05:19:34 2002
   Repository revision:	1.1163	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1088	Wed Jul 24 05:19:34 2002
   Repository revision:	1.1088	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 25, 19102 @ 10:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv2677

Modified Files:
	NamdCentLB.C 
Log Message:
Fixed bug - initialize available to true!


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.38	Thu Jul 25 15:49:31 2002
   Repository revision:	1.38	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Friday July 26, 19102 @ 8:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	AlgSeven.C Rebalancer.C Rebalancer.h 
Log Message:
Balance proxy counts, both per home patch and per remote processor.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.36	Thu Jul 25 22:47:55 2002
   Repository revision:	1.36	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.29)
	release-2-4              	(revision: 1.29)
	release-2-4-beta-2       	(revision: 1.29)
	release-2-4-beta-1       	(revision: 1.29)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.43	Thu Jul 25 22:47:28 2002
   Repository revision:	1.43	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.34)
	release-2-4              	(revision: 1.34)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: Rebalancer.h     	Status: Up-to-date

   Working revision:	1.13	Thu Jul 25 21:49:02 2002
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/Rebalancer.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.11)
	release-2-4-beta-2       	(revision: 1.11)
	release-2-4-beta-1       	(revision: 1.11)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)


****************************************
Date:	Friday July 26, 19102 @ 8:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv5355

Modified Files:
	AlgSeven.C Rebalancer.C 
Log Message:
Balance number of proxies for each patch.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.37	Fri Jul 26 13:41:30 2002
   Repository revision:	1.37	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.29)
	release-2-4              	(revision: 1.29)
	release-2-4-beta-2       	(revision: 1.29)
	release-2-4-beta-1       	(revision: 1.29)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.44	Fri Jul 26 13:41:30 2002
   Repository revision:	1.44	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.34)
	release-2-4              	(revision: 1.34)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)


****************************************
Date:	Friday July 26, 19102 @ 9:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv5423

Modified Files:
	NamdCentLB.C 
Log Message:
New smarter algorithm for locating initial proxies on vacant nodes.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.39	Fri Jul 26 14:04:39 2002
   Repository revision:	1.39	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Friday July 26, 19102 @ 14:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv6070

Modified Files:
	RecBisection.C 
Log Message:
Tune bisection to match load distribution.


===================================================================
File: RecBisection.C   	Status: Up-to-date

   Working revision:	1.13	Fri Jul 26 19:30:59 2002
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/RecBisection.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.11)
	release-2-4-beta-2       	(revision: 1.11)
	release-2-4-beta-1       	(revision: 1.11)
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)


****************************************
Date:	Friday July 26, 19102 @ 16:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv6440

Modified Files:
	SimParameters.C SimParameters.h NamdCentLB.C 
Log Message:
Added ldbHomeBackgroundScaling and unloadZero options.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1164	Fri Jul 26 21:57:46 2002
   Repository revision:	1.1164	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1089	Fri Jul 26 21:57:46 2002
   Repository revision:	1.1089	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.40	Fri Jul 26 21:57:46 2002
   Repository revision:	1.40	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Friday July 26, 19102 @ 16:59
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv6463

Modified Files:
	AlgSeven.C Rebalancer.C 
Log Message:
Better behaviour when extra proxies are needed to balance load.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.38	Fri Jul 26 21:59:18 2002
   Repository revision:	1.38	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.29)
	release-2-4              	(revision: 1.29)
	release-2-4-beta-2       	(revision: 1.29)
	release-2-4-beta-1       	(revision: 1.29)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.45	Fri Jul 26 21:59:18 2002
   Repository revision:	1.45	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.34)
	release-2-4              	(revision: 1.34)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)


****************************************
Date:	Friday July 26, 19102 @ 17:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv6571

Modified Files:
	Controller.C LdbCoordinator.C 
Log Message:
Wait, alg7, refine, refine, then run for a long time.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1163	Fri Jul 26 22:47:41 2002
   Repository revision:	1.1163	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.60	Fri Jul 26 22:47:42 2002
   Repository revision:	1.60	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Saturday July 27, 19102 @ 16:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv8559

Modified Files:
	LdbCoordinator.C 
Log Message:
Remove warnings.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.61	Sat Jul 27 21:26:37 2002
   Repository revision:	1.61	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Saturday July 27, 19102 @ 16:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv8580

Modified Files:
	NamdCentLB.C 
Log Message:
Actually run Alg7.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.41	Sat Jul 27 21:27:28 2002
   Repository revision:	1.41	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Saturday July 27, 19102 @ 17:07
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv4210

Modified Files:
	LdbCoordinator.C 
Log Message:
fix partial projection log according to ldbCycleNum change recently.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.62	Sat Jul 27 22:07:13 2002
   Repository revision:	1.62	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Sunday July 28, 19102 @ 12:12
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv11286

Modified Files:
	acks.tex 
Log Message:

added new info


===================================================================
File: acks.tex         	Status: Up-to-date

   Working revision:	1.3	Sun Jul 28 17:12:56 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/acks.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday July 28, 19102 @ 12:46
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv11369

Added Files:
	namd.gif 
Log Message:

PME diagram. To be used in concurrent execution of PME.
Doesn't look right, though.




===================================================================
File: namd.gif         	Status: Up-to-date

   Working revision:	1.1	Sun Jul 28 17:46:19 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/namd.gif,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday July 28, 19102 @ 21:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	mdintro.tex 
Log Message:
Added copyright info.


===================================================================
File: mdintro.tex      	Status: Up-to-date

   Working revision:	1.3	Mon Jul 29 02:44:07 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/mdintro.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday July 28, 19102 @ 22:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	acks.tex title.tex 
Log Message:
Cleaned up first page.


===================================================================
File: acks.tex         	Status: Up-to-date

   Working revision:	1.4	Mon Jul 29 03:06:00 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd-sc2002/acks.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: title.tex        	Status: Up-to-date

   Working revision:	1.4	Mon Jul 29 03:06:24 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd-sc2002/title.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday July 28, 19102 @ 22:52
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/tmp/cvs-serv5328

Modified Files:
	Molecule.C Parameters.C 
Log Message:
Fixed some UMR's uncovered by Valgrind.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1075	Mon Jul 29 03:51:49 2002
   Repository revision:	1.1075	/home/cvs/namd/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1027	Mon Jul 29 03:51:59 2002
   Repository revision:	1.1027	/home/cvs/namd/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1024)
	release-2-4              	(revision: 1.1024)
	release-2-4-beta-2       	(revision: 1.1024)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1020)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday July 28, 19102 @ 23:18
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/tmp/cvs-serv5500

Modified Files:
	ScriptTcl.C 
Log Message:
Bring the Tcl interface up to date with the new plugins API.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.37	Mon Jul 29 04:18:10 2002
   Repository revision:	1.37	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Monday July 29, 19102 @ 0:20
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002

Modified Files:
	acks.tex 
Log Message:
adding names of the staff at PSC


===================================================================
File: acks.tex         	Status: Up-to-date

   Working revision:	1.5	Mon Jul 29 05:19:27 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd-sc2002/acks.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 10:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	acks.tex 
Log Message:
Added grants.


===================================================================
File: acks.tex         	Status: Up-to-date

   Working revision:	1.6	Mon Jul 29 15:11:20 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd-sc2002/acks.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 10:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	acks.tex 
Log Message:
spelling


===================================================================
File: acks.tex         	Status: Up-to-date

   Working revision:	1.7	Mon Jul 29 15:15:26 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd-sc2002/acks.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 13:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	results.tex 
Log Message:
Added op count table.


===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.10	Mon Jul 29 18:25:17 2002
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 14:48
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002/FIGS
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv16823

Added Files:
	enqAB.png namdBlockFlow.pdf 
Log Message:
initial version of the block diagram
and the histogram.


===================================================================
File: enqAB.png        	Status: Up-to-date

   Working revision:	1.1	Mon Jul 29 19:48:52 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/FIGS/enqAB.png,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdBlockFlow.pdf	Status: Up-to-date

   Working revision:	1.1	Mon Jul 29 19:48:52 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/FIGS/namdBlockFlow.pdf,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 15:01
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	results.tex 
Log Message:
Added study of load balancer performance in a longer run.


===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.11	Mon Jul 29 20:00:18 2002
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 15:01
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002/FIGS
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002/FIGS

Added Files:
	longrun.pdf 
Log Message:
Added study of load balancer performance in a longer run.


===================================================================
File: longrun.pdf      	Status: Up-to-date

   Working revision:	1.1	Mon Jul 29 19:47:29 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/FIGS/longrun.pdf,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 15:06
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv17003

Modified Files:
	namdpme.tex 
Log Message:
added figs


===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.8	Mon Jul 29 20:06:00 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 15:12
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv17067

Modified Files:
	namdpme.tex 
Log Message:
edited, and added ref to the block diag figure.



===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.9	Mon Jul 29 20:12:16 2002
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 15:18
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002/FIGS
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv17114

Added Files:
	intermediate_namd.pdf 
Log Message:
added



===================================================================
File: intermediate_namd.pdf	Status: Up-to-date

   Working revision:	1.1	Mon Jul 29 20:18:19 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/FIGS/intermediate_namd.pdf,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 15:47
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv17327

Modified Files:
	main.tex namdpme.tex 
Log Message:
edited



===================================================================
File: main.tex         	Status: Up-to-date

   Working revision:	1.5	Mon Jul 29 20:47:10 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd-sc2002/main.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.10	Mon Jul 29 20:47:10 2002
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 15:47
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv17369

Added Files:
	performance.tex 
Log Message:
edit



===================================================================
File: performance.tex  	Status: Up-to-date

   Working revision:	1.1	Mon Jul 29 20:47:42 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/performance.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 16:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	Makefile future.tex main.tex results.tex 
Added Files:
	measurement.tex 
Log Message:
New benchmark methodology section, brought back future work.


===================================================================
File: measurement.tex  	Status: Up-to-date

   Working revision:	1.1	Mon Jul 29 21:07:20 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/measurement.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.5	Mon Jul 29 21:09:04 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd-sc2002/Makefile,v

   Existing Tags:
	No Tags Exist

===================================================================
File: future.tex       	Status: Up-to-date

   Working revision:	1.2	Mon Jul 29 14:39:45 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/future.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: main.tex         	Status: Up-to-date

   Working revision:	1.6	Mon Jul 29 21:08:28 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd-sc2002/main.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.12	Mon Jul 29 21:07:42 2002
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 17:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	measurement.tex 
Log Message:
More text, should be complete now.


===================================================================
File: measurement.tex  	Status: Up-to-date

   Working revision:	1.2	Mon Jul 29 22:04:01 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/measurement.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 17:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	measurement.tex 
Log Message:
More tweaks.


===================================================================
File: measurement.tex  	Status: Up-to-date

   Working revision:	1.3	Mon Jul 29 22:21:18 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/measurement.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 17:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002/FIGS
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002/FIGS

Added Files:
	badproj.png 
Log Message:
Bad projections example.


===================================================================
File: badproj.png      	Status: Up-to-date

   Working revision:	1.1	Mon Jul 29 01:34:48 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/FIGS/badproj.png,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 17:51
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002

Modified Files:
	namdpme.tex 
Log Message:
edited



===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.11	Mon Jul 29 22:48:27 2002
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 17:51
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002/FIGS
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002/FIGS

Modified Files:
	enqAB.png intermediate_namd.pdf 
Log Message:
new figs



===================================================================
File: enqAB.png        	Status: Up-to-date

   Working revision:	1.2	Mon Jul 29 22:49:49 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/FIGS/enqAB.png,v

   Existing Tags:
	No Tags Exist

===================================================================
File: intermediate_namd.pdf	Status: Up-to-date

   Working revision:	1.2	Mon Jul 29 22:45:43 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/FIGS/intermediate_namd.pdf,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 18:47
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002/FIGS
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002/FIGS

Modified Files:
	enqAB.png 
Log Message:
new fig.


===================================================================
File: enqAB.png        	Status: Up-to-date

   Working revision:	1.3	Mon Jul 29 23:45:54 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/FIGS/enqAB.png,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 18:58
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002

Modified Files:
	performance.tex 
Log Message:
added data about histogram



===================================================================
File: performance.tex  	Status: Up-to-date

   Working revision:	1.2	Mon Jul 29 23:58:17 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/performance.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 19:15
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002

Modified Files:
	acks.tex 
Log Message:
adding John Kochmar for the obvious reasons ;)


===================================================================
File: acks.tex         	Status: Up-to-date

   Working revision:	1.8	Tue Jul 30 00:15:29 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd-sc2002/acks.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 20:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	future.tex main.tex namdpar.tex namdpme.tex performance.tex 
	results.tex 
Log Message:
Cleaned, shifted performance.tex to end of namdpar section.


===================================================================
File: future.tex       	Status: Up-to-date

   Working revision:	1.3	Tue Jul 30 01:21:36 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/future.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: main.tex         	Status: Up-to-date

   Working revision:	1.7	Tue Jul 30 01:05:34 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd-sc2002/main.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpar.tex      	Status: Up-to-date

   Working revision:	1.8	Tue Jul 30 01:05:11 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd-sc2002/namdpar.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.12	Tue Jul 30 01:17:21 2002
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: performance.tex  	Status: Up-to-date

   Working revision:	1.3	Tue Jul 30 01:27:13 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/performance.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.13	Tue Jul 30 01:17:41 2002
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 21:13
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002

Modified Files:
	performance.tex 
Log Message:
added ref to reltiveScaling figurte



===================================================================
File: performance.tex  	Status: Up-to-date

   Working revision:	1.4	Tue Jul 30 02:11:25 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd-sc2002/performance.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 21:55
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	results.tex 
Log Message:
added tables


===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.14	Tue Jul 30 02:37:36 2002
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 22:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	lemieux.tex 
Log Message:
added table


===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.12	Tue Jul 30 03:07:34 2002
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 22:14
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002/FIGS
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002/FIGS

Added Files:
	relativeScalingSeconds.png 
Log Message:
added file in



===================================================================
File: relativeScalingSeconds.png	Status: Up-to-date

   Working revision:	1.1	Tue Jul 30 01:59:58 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/FIGS/relativeScalingSeconds.png,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 22:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	measurement.tex 
Log Message:
quick note


===================================================================
File: measurement.tex  	Status: Up-to-date

   Working revision:	1.4	Tue Jul 30 03:14:58 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd-sc2002/measurement.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 22:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	measurement.tex 
Log Message:
per clock calc


===================================================================
File: measurement.tex  	Status: Up-to-date

   Working revision:	1.5	Tue Jul 30 03:25:40 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd-sc2002/measurement.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 22:31
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	main.tex 
Log Message:
joined last two sections


===================================================================
File: main.tex         	Status: Up-to-date

   Working revision:	1.8	Tue Jul 30 03:29:23 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd-sc2002/main.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 22:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	title.tex 
Log Message:
Fixed affil.


===================================================================
File: title.tex        	Status: Up-to-date

   Working revision:	1.5	Tue Jul 30 03:41:41 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd-sc2002/title.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 22:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	results.tex 
Log Message:
New text.


===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.15	Tue Jul 30 03:56:44 2002
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 23:01
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002

Modified Files:
	future.tex 
Log Message:
wrote text



===================================================================
File: future.tex       	Status: Up-to-date

   Working revision:	1.4	Tue Jul 30 04:00:45 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd-sc2002/future.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 23:01
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002/FIGS
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002/FIGS

Added Files:
	timeline.png 
Log Message:
added good timeline



===================================================================
File: timeline.png     	Status: Up-to-date

   Working revision:	1.1	Tue Jul 30 03:53:11 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/FIGS/timeline.png,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 23:19
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002

Modified Files:
	future.tex 
Log Message:
corrections.



===================================================================
File: future.tex       	Status: Up-to-date

   Working revision:	1.5	Tue Jul 30 04:19:04 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd-sc2002/future.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 23:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002/data
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002/data

Log Message:
Directory /Projects/namd2/cvsroot/namd-sc2002/data added to the repository


[input file was '-']

****************************************
Date:	Monday July 29, 19102 @ 23:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002/data
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002/data

Added Files:
	apoa1.awk apoa1_data apoa1_table atpase.awk atpase_data 
	atpase_mpi.awk atpase_mpi_table atpase_table flops_data 
Log Message:
Checking in data.


===================================================================
File: apoa1.awk        	Status: Up-to-date

   Working revision:	1.1	Tue Jul 30 02:24:55 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/data/apoa1.awk,v

   Existing Tags:
	No Tags Exist

===================================================================
File: apoa1_data       	Status: Up-to-date

   Working revision:	1.1	Tue Jul 30 02:34:16 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/data/apoa1_data,v

   Existing Tags:
	No Tags Exist

===================================================================
File: apoa1_table      	Status: Up-to-date

   Working revision:	1.1	Tue Jul 30 02:36:23 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/data/apoa1_table,v

   Existing Tags:
	No Tags Exist

===================================================================
File: atpase.awk       	Status: Up-to-date

   Working revision:	1.1	Tue Jul 30 02:19:55 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/data/atpase.awk,v

   Existing Tags:
	No Tags Exist

===================================================================
File: atpase_data      	Status: Up-to-date

   Working revision:	1.1	Tue Jul 30 04:22:33 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/data/atpase_data,v

   Existing Tags:
	No Tags Exist

===================================================================
File: atpase_mpi.awk   	Status: Up-to-date

   Working revision:	1.1	Tue Jul 30 02:53:27 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/data/atpase_mpi.awk,v

   Existing Tags:
	No Tags Exist

===================================================================
File: atpase_mpi_table 	Status: Up-to-date

   Working revision:	1.1	Tue Jul 30 04:23:22 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/data/atpase_mpi_table,v

   Existing Tags:
	No Tags Exist

===================================================================
File: atpase_table     	Status: Up-to-date

   Working revision:	1.1	Tue Jul 30 04:23:11 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/data/atpase_table,v

   Existing Tags:
	No Tags Exist

===================================================================
File: flops_data       	Status: Up-to-date

   Working revision:	1.1	Mon Jul 29 16:31:03 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/data/flops_data,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 23:27
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002

Modified Files:
	future.tex 
Log Message:
edited. Added ref to second timeline



===================================================================
File: future.tex       	Status: Up-to-date

   Working revision:	1.6	Tue Jul 30 04:26:51 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd-sc2002/future.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 23:27
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002/FIGS
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002/FIGS

Modified Files:
	relativeScalingSeconds.png 
Log Message:
new version with larger fonts



===================================================================
File: relativeScalingSeconds.png	Status: Up-to-date

   Working revision:	1.2	Tue Jul 30 04:21:32 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/FIGS/relativeScalingSeconds.png,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 23:29
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory hanoi:/tmp/cvs-serv9575

Modified Files:
	acks.tex 
Log Message:
spell


===================================================================
File: acks.tex         	Status: Up-to-date

   Working revision:	1.9	Tue Jul 30 04:29:00 2002
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd-sc2002/acks.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 23:31
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002

Modified Files:
	performance.tex 
Log Message:
added sentence abou the scale of relative Scaling graph.



===================================================================
File: performance.tex  	Status: Up-to-date

   Working revision:	1.5	Tue Jul 30 04:30:40 2002
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd-sc2002/performance.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 23:31
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory hanoi:/tmp/cvs-serv9604

Modified Files:
	main.tex 
Log Message:
spell


===================================================================
File: main.tex         	Status: Up-to-date

   Working revision:	1.9	Tue Jul 30 04:31:57 2002
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd-sc2002/main.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 23:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	future.tex lemieux.tex main.tex results.tex 
Log Message:
Cleanups.


===================================================================
File: future.tex       	Status: Up-to-date

   Working revision:	1.7	Tue Jul 30 04:34:54 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd-sc2002/future.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.13	Tue Jul 30 04:24:40 2002
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: main.tex         	Status: Up-to-date

   Working revision:	1.10	Tue Jul 30 04:35:37 2002
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd-sc2002/main.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.16	Tue Jul 30 04:18:35 2002
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 23:46
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory hanoi:/tmp/cvs-serv9745

Modified Files:
	performance.tex 
Log Message:
spell


===================================================================
File: performance.tex  	Status: Up-to-date

   Working revision:	1.6	Tue Jul 30 04:46:19 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd-sc2002/performance.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 23:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	measurement.tex 
Log Message:
clarified caption and comparison


===================================================================
File: measurement.tex  	Status: Up-to-date

   Working revision:	1.6	Tue Jul 30 04:50:17 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd-sc2002/measurement.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 23:52
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002

Modified Files:
	future.tex 
Log Message:
edited



===================================================================
File: future.tex       	Status: Up-to-date

   Working revision:	1.8	Tue Jul 30 04:52:46 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd-sc2002/future.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 23:56
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002/data
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002/data

Modified Files:
	apoa1_data apoa1_table atpase_data atpase_mpi_table 
	atpase_table 
Log Message:
final data seems to be right!


===================================================================
File: apoa1_data       	Status: Up-to-date

   Working revision:	1.2	Tue Jul 30 04:52:51 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/data/apoa1_data,v

   Existing Tags:
	No Tags Exist

===================================================================
File: apoa1_table      	Status: Up-to-date

   Working revision:	1.2	Tue Jul 30 04:54:48 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/data/apoa1_table,v

   Existing Tags:
	No Tags Exist

===================================================================
File: atpase_data      	Status: Up-to-date

   Working revision:	1.2	Tue Jul 30 04:47:42 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/data/atpase_data,v

   Existing Tags:
	No Tags Exist

===================================================================
File: atpase_mpi_table 	Status: Up-to-date

   Working revision:	1.2	Tue Jul 30 04:54:09 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/data/atpase_mpi_table,v

   Existing Tags:
	No Tags Exist

===================================================================
File: atpase_table     	Status: Up-to-date

   Working revision:	1.2	Tue Jul 30 04:54:18 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd-sc2002/data/atpase_table,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday July 29, 19102 @ 23:57
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory hanoi:/tmp/cvs-serv9810

Modified Files:
	lemieux.tex 
Log Message:
fixed a table ref.


===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.14	Tue Jul 30 04:57:57 2002
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 0:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	performance.tex main.tex 
Log Message:
Moved to end.


===================================================================
File: performance.tex  	Status: Up-to-date

   Working revision:	1.7	Tue Jul 30 05:02:37 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd-sc2002/performance.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: main.tex         	Status: Up-to-date

   Working revision:	1.11	Tue Jul 30 05:00:11 2002
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd-sc2002/main.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 0:15
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002

Modified Files:
	lemieux.tex results.tex 
Log Message:
Adding latest data


===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.15	Tue Jul 30 05:13:48 2002
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.17	Tue Jul 30 05:13:24 2002
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 0:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	namdpar.tex namdpme.tex 
Log Message:
new text


===================================================================
File: namdpar.tex      	Status: Up-to-date

   Working revision:	1.9	Tue Jul 30 05:34:32 2002
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd-sc2002/namdpar.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.13	Tue Jul 30 05:31:45 2002
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 0:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	lemieux.tex 
Log Message:
moved table up


===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.16	Tue Jul 30 05:37:45 2002
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 0:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	abstract.tex 
Log Message:
added 1 word


===================================================================
File: abstract.tex     	Status: Up-to-date

   Working revision:	1.7	Tue Jul 30 05:48:11 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd-sc2002/abstract.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 1:09
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002

Modified Files:
	namdpme.tex 
Log Message:
moving communications library section to limieux.tex 


===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.14	Tue Jul 30 05:47:40 2002
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 1:09
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002

Modified Files:
	lemieux.tex 
Log Message:
Adding the communication library section


===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.17	Tue Jul 30 06:05:26 2002
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 1:16
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002

Modified Files:
	main.tex 
Log Message:
Adding label to future work.


===================================================================
File: main.tex         	Status: Up-to-date

   Working revision:	1.12	Tue Jul 30 06:15:30 2002
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd-sc2002/main.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 1:17
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002

Modified Files:
	lemieux.tex 
Log Message:
Adding Section before the label.


===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.18	Tue Jul 30 06:17:04 2002
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 1:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	future.tex mdintro.tex namdpar.tex performance.tex 
Log Message:
updates


===================================================================
File: future.tex       	Status: Up-to-date

   Working revision:	1.9	Tue Jul 30 06:36:42 2002
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd-sc2002/future.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: mdintro.tex      	Status: Up-to-date

   Working revision:	1.4	Tue Jul 30 05:54:55 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd-sc2002/mdintro.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpar.tex      	Status: Up-to-date

   Working revision:	1.10	Tue Jul 30 06:35:20 2002
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd-sc2002/namdpar.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: performance.tex  	Status: Up-to-date

   Working revision:	1.8	Tue Jul 30 06:06:36 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd-sc2002/performance.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 1:42
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002

Modified Files:
	performance.tex 
Log Message:
edited to accomdoate new pic.



===================================================================
File: performance.tex  	Status: Up-to-date

   Working revision:	1.9	Tue Jul 30 06:42:11 2002
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd-sc2002/performance.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 1:43
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002/FIGS
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002/FIGS

Modified Files:
	relativeScalingSeconds.png 
Log Message:
new pic. Going to 2250 procs.



===================================================================
File: relativeScalingSeconds.png	Status: Up-to-date

   Working revision:	1.3	Tue Jul 30 06:34:56 2002
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd-sc2002/FIGS/relativeScalingSeconds.png,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 1:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	performance.tex results.tex 
Log Message:
tweaks


===================================================================
File: performance.tex  	Status: Up-to-date

   Working revision:	1.10	Tue Jul 30 06:47:48 2002
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd-sc2002/performance.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.18	Tue Jul 30 06:48:14 2002
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 1:59
Author:	sameer

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory kiev.ks.uiuc.edu:/Home/l1/sameer/namd-sc2002

Modified Files:
	lemieux.tex 
Log Message:
Implementing sanjays changes


===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.19	Tue Jul 30 06:58:24 2002
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 2:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	future.tex namdpme.tex performance.tex 
Log Message:
tweaks


===================================================================
File: future.tex       	Status: Up-to-date

   Working revision:	1.10	Tue Jul 30 06:58:50 2002
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd-sc2002/future.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.15	Tue Jul 30 07:01:29 2002
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: performance.tex  	Status: Up-to-date

   Working revision:	1.11	Tue Jul 30 06:52:58 2002
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd-sc2002/performance.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 2:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	performance.tex 
Log Message:
spelling


===================================================================
File: performance.tex  	Status: Up-to-date

   Working revision:	1.12	Tue Jul 30 07:03:11 2002
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd-sc2002/performance.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 2:07
Author:	kale

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory bristol.ks.uiuc.edu:/Home/pi/kale/namd-sc2002

Modified Files:
	performance.tex 
Log Message:
small corrections.



===================================================================
File: performance.tex  	Status: Up-to-date

   Working revision:	1.13	Tue Jul 30 07:05:48 2002
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd-sc2002/performance.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 2:13
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory hanoi:/tmp/cvs-serv10265

Modified Files:
	measurement.tex 
Log Message:
spell


===================================================================
File: measurement.tex  	Status: Up-to-date

   Working revision:	1.7	Tue Jul 30 07:13:15 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd-sc2002/measurement.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 2:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	future.tex measurement.tex namdpar.tex namdpme.tex 
	performance.tex 
Log Message:
more


===================================================================
File: future.tex       	Status: Up-to-date

   Working revision:	1.11	Tue Jul 30 07:26:02 2002
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd-sc2002/future.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: measurement.tex  	Status: Up-to-date

   Working revision:	1.8	Tue Jul 30 07:26:36 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd-sc2002/measurement.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpar.tex      	Status: Up-to-date

   Working revision:	1.11	Tue Jul 30 07:19:46 2002
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd-sc2002/namdpar.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: namdpme.tex      	Status: Up-to-date

   Working revision:	1.16	Tue Jul 30 07:16:49 2002
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd-sc2002/namdpme.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: performance.tex  	Status: Up-to-date

   Working revision:	1.14	Tue Jul 30 07:24:06 2002
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd-sc2002/performance.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 2:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	measurement.tex 
Log Message:
grammar


===================================================================
File: measurement.tex  	Status: Up-to-date

   Working revision:	1.9	Tue Jul 30 07:30:22 2002
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd-sc2002/measurement.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 2:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	future.tex lemieux.tex results.tex 
Log Message:
fixes


===================================================================
File: future.tex       	Status: Up-to-date

   Working revision:	1.12	Tue Jul 30 07:40:49 2002
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd-sc2002/future.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: lemieux.tex      	Status: Up-to-date

   Working revision:	1.20	Tue Jul 30 07:44:21 2002
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd-sc2002/lemieux.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: results.tex      	Status: Up-to-date

   Working revision:	1.19	Tue Jul 30 07:44:28 2002
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd-sc2002/results.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 2:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	future.tex measurement.tex 
Log Message:
tweaks


===================================================================
File: future.tex       	Status: Up-to-date

   Working revision:	1.13	Tue Jul 30 07:46:18 2002
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd-sc2002/future.tex,v

   Existing Tags:
	No Tags Exist

===================================================================
File: measurement.tex  	Status: Up-to-date

   Working revision:	1.10	Tue Jul 30 07:50:11 2002
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd-sc2002/measurement.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 2:53
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	abstract.tex 
Log Message:
tweak


===================================================================
File: abstract.tex     	Status: Up-to-date

   Working revision:	1.8	Tue Jul 30 07:53:41 2002
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd-sc2002/abstract.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 9:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Modified Files:
	performance.tex 
Log Message:
replaced figure


===================================================================
File: performance.tex  	Status: Up-to-date

   Working revision:	1.15	Tue Jul 30 14:10:20 2002
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd-sc2002/performance.tex,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 9:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002/FIGS
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002/FIGS

Added Files:
	relativeScalingSeconds-unnormalized.png 
Log Message:
replaced figure


===================================================================
File: relativeScalingSeconds-unnormalized.png	Status: Up-to-date

   Working revision:	1.1	Tue Jul 30 09:40:04 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/FIGS/relativeScalingSeconds-unnormalized.png,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 9:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002

Added Files:
	final.pdf 
Log Message:
Final version submitted with new figure!


===================================================================
File: final.pdf        	Status: Up-to-date

   Working revision:	1.1	Tue Jul 30 14:11:53 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/final.pdf,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 9:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002/plots
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002/plots

Log Message:
Directory /Projects/namd2/cvsroot/namd-sc2002/plots added to the repository


[input file was '-']

****************************************
Date:	Tuesday July 30, 19102 @ 9:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002/plots
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002/plots

Added Files:
	apoa1_longbench.dat apoa1_longbench.log diff.awk dodistill 
	doplot longtime.eps 
Log Message:
Data and scripts from sustained performance plot.


===================================================================
File: apoa1_longbench.dat	Status: Up-to-date

   Working revision:	1.1	Mon Jul 29 19:30:53 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/plots/apoa1_longbench.dat,v

   Existing Tags:
	No Tags Exist

===================================================================
File: apoa1_longbench.log	Status: Up-to-date

   Working revision:	1.1	Mon Jul 29 19:20:48 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/plots/apoa1_longbench.log,v

   Existing Tags:
	No Tags Exist

===================================================================
File: diff.awk         	Status: Up-to-date

   Working revision:	1.1	Mon Jul 29 19:29:57 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/plots/diff.awk,v

   Existing Tags:
	No Tags Exist

===================================================================
File: dodistill        	Status: Up-to-date

   Working revision:	1.1	Mon Jul 29 19:33:08 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/plots/dodistill,v

   Existing Tags:
	No Tags Exist

===================================================================
File: doplot           	Status: Up-to-date

   Working revision:	1.1	Mon Jul 29 19:45:51 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/plots/doplot,v

   Existing Tags:
	No Tags Exist

===================================================================
File: longtime.eps     	Status: Up-to-date

   Working revision:	1.1	Mon Jul 29 19:47:14 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/plots/longtime.eps,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 9:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002/origdata
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002/origdata

Log Message:
Directory /Projects/namd2/cvsroot/namd-sc2002/origdata added to the repository


[input file was '-']

****************************************
Date:	Tuesday July 30, 19102 @ 9:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd-sc2002/origdata
In directory verdun.ks.uiuc.edu:/Home/l1/jim/Papers/2002_05_NAMD_SC2002/namd-sc2002/origdata

Added Files:
	apoa1.awk apoa1.dat atpase.awk atpase.dat 
Log Message:
Data from original submission (extended abstract).


===================================================================
File: apoa1.awk        	Status: Up-to-date

   Working revision:	1.1	Sat May  4 01:30:55 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/origdata/apoa1.awk,v

   Existing Tags:
	No Tags Exist

===================================================================
File: apoa1.dat        	Status: Up-to-date

   Working revision:	1.1	Sat May  4 01:42:25 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/origdata/apoa1.dat,v

   Existing Tags:
	No Tags Exist

===================================================================
File: atpase.awk       	Status: Up-to-date

   Working revision:	1.1	Sat May  4 01:34:40 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/origdata/atpase.awk,v

   Existing Tags:
	No Tags Exist

===================================================================
File: atpase.dat       	Status: Up-to-date

   Working revision:	1.1	Sat May  4 01:31:50 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd-sc2002/origdata/atpase.dat,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 30, 19102 @ 12:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv23240

Modified Files:
	RecBisection.C 
Log Message:
New x-dim splitting criteria.


===================================================================
File: RecBisection.C   	Status: Up-to-date

   Working revision:	1.14	Tue Jul 30 17:45:11 2002
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/RecBisection.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.11)
	release-2-4-beta-2       	(revision: 1.11)
	release-2-4-beta-1       	(revision: 1.11)
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)


****************************************
Date:	Tuesday July 30, 19102 @ 16:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Molecule.C Molecule.h 
Log Message:
Remove spurious exclusions generated due to FEP or LES.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1076	Tue Jul 30 21:49:44 2002
   Repository revision:	1.1076	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1046	Tue Jul 30 21:46:50 2002
   Repository revision:	1.1046	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1040)
	release-2-4-beta-2       	(revision: 1.1040)
	release-2-4-beta-1       	(revision: 1.1038)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1034)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday August 1, 19102 @ 10:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv28116

Added Files:
	HPUX-ia64-aCC.arch HPUX-ia64.base HPUX-ia64.fftw HPUX-ia64.tcl 
Log Message:
HPUX-ia64 port


===================================================================
File: HPUX-ia64-aCC.arch	Status: Up-to-date

   Working revision:	1.1	Thu Aug  1 15:28:21 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX-ia64-aCC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX-ia64.base   	Status: Up-to-date

   Working revision:	1.1	Thu Aug  1 15:28:21 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX-ia64.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX-ia64.fftw   	Status: Up-to-date

   Working revision:	1.1	Thu Aug  1 15:28:21 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX-ia64.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX-ia64.tcl    	Status: Up-to-date

   Working revision:	1.1	Thu Aug  1 15:28:21 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/HPUX-ia64.tcl,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday August 1, 19102 @ 14:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Molecule.C Molecule.h Output.C 
Log Message:
New cluster code to handle structures with waters between bonded segments.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1077	Thu Aug  1 18:24:23 2002
   Repository revision:	1.1077	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1047	Thu Aug  1 16:19:44 2002
   Repository revision:	1.1047	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1040)
	release-2-4-beta-2       	(revision: 1.1040)
	release-2-4-beta-1       	(revision: 1.1038)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1034)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.44	Thu Aug  1 18:12:15 2002
   Repository revision:	1.44	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.43)
	release-2-4              	(revision: 1.41)
	release-2-4-beta-2       	(revision: 1.41)
	release-2-4-beta-1       	(revision: 1.41)
	release-2-3              	(revision: 1.40)
	release-2-3-beta-2       	(revision: 1.40)
	release-2-3-beta-1       	(revision: 1.39)
	release-2-2              	(revision: 1.37)
	release-2-2-beta-3       	(revision: 1.37)
	release-2-2-beta-2       	(revision: 1.35)
	release-2-2-beta-1       	(revision: 1.35)
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday August 1, 19102 @ 16:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	AIX-RS6000.fftw 
Log Message:
Use same fftw directory as IBM-SP.


===================================================================
File: AIX-RS6000.fftw  	Status: Up-to-date

   Working revision:	1.6	Thu Aug  1 21:49:00 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)


****************************************
Date:	Thursday August 1, 19102 @ 17:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	IBM-SP.plugins 
Log Message:
AIX -> AIX4


===================================================================
File: IBM-SP.plugins   	Status: Up-to-date

   Working revision:	1.2	Thu Aug  1 22:21:28 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.plugins,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday August 1, 19102 @ 17:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	LdbCoordinator.C 
Log Message:
Eliminate compiler crash on Scyld.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.63	Thu Aug  1 22:41:01 2002
   Repository revision:	1.63	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Thursday August 1, 19102 @ 18:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	AIX-RS6000.plugins 
Log Message:
AIX -> AIX4


===================================================================
File: AIX-RS6000.plugins	Status: Up-to-date

   Working revision:	1.2	Thu Aug  1 23:26:17 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000.plugins,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday August 2, 19102 @ 9:19
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv241

Modified Files:
	HomePatch.C HomePatch.h LdbCoordinator.C 
Log Message:
checked in persistent comm for elan version.
default is not turned on. uncomment CmiUsePersistentHandle() in HomePatch.C to activate it.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1096	Fri Aug  2 14:19:51 2002
   Repository revision:	1.1096	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1036	Fri Aug  2 14:19:51 2002
   Repository revision:	1.1036	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1034)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1032)
	release-2-3-beta-1       	(revision: 1.1032)
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.64	Fri Aug  2 14:19:51 2002
   Repository revision:	1.64	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Friday August 2, 19102 @ 10:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Added Files:
	Linux-ia64.plugins 
Log Message:
Added plugins for LINUXIA64.


===================================================================
File: Linux-ia64.plugins	Status: Up-to-date

   Working revision:	1.1	Fri Aug  2 15:31:51 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64.plugins,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday August 2, 19102 @ 10:53
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv410

Modified Files:
	HomePatch.C LdbCoordinator.C 
Log Message:
put CMK_PERSISTENT_COMM around new calls.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1097	Fri Aug  2 15:53:29 2002
   Repository revision:	1.1097	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.65	Fri Aug  2 15:53:29 2002
   Repository revision:	1.65	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Friday August 2, 19102 @ 13:46
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv672

Modified Files:
	HomePatch.C 
Log Message:
missed a couple places for #if CMK_PERSISTENT_COMM


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1098	Fri Aug  2 18:46:46 2002
   Repository revision:	1.1098	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 2, 19102 @ 16:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Output.C 
Log Message:
Fixed bug and replaced stupid dual implementation with template!


===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.45	Fri Aug  2 21:01:42 2002
   Repository revision:	1.45	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.43)
	release-2-4              	(revision: 1.41)
	release-2-4-beta-2       	(revision: 1.41)
	release-2-4-beta-1       	(revision: 1.41)
	release-2-3              	(revision: 1.40)
	release-2-3-beta-2       	(revision: 1.40)
	release-2-3-beta-1       	(revision: 1.39)
	release-2-2              	(revision: 1.37)
	release-2-2-beta-3       	(revision: 1.37)
	release-2-2-beta-2       	(revision: 1.35)
	release-2-2-beta-1       	(revision: 1.35)
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)


****************************************
Date:	Friday August 2, 19102 @ 16:46
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added Settle, an analytical form of Shake/Rattle for waters.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.89	Fri Aug  2 21:43:38 2002
   Repository revision:	1.89	/home/cvs/namd/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.88)
	release-2-4              	(revision: 1.88)
	release-2-4-beta-2       	(revision: 1.88)
	release-2-4-beta-1       	(revision: 1.86)
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1184	Thu Aug  1 20:47:49 2002
   Repository revision:	1.1184	/home/cvs/namd/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 2, 19102 @ 16:46
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	HomePatch.C SimParameters.C SimParameters.h 
Added Files:
	Settle.C Settle.h 
Log Message:
Added Settle, an analytical form of Shake/Rattle for waters.


===================================================================
File: Settle.C         	Status: Up-to-date

   Working revision:	1.1	Fri Aug  2 21:44:44 2002
   Repository revision:	1.1	/home/cvs/namd/cvsroot/namd2/src/Settle.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Settle.h         	Status: Up-to-date

   Working revision:	1.1	Fri Aug  2 21:44:36 2002
   Repository revision:	1.1	/home/cvs/namd/cvsroot/namd2/src/Settle.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1099	Fri Aug  2 21:42:00 2002
   Repository revision:	1.1099	/home/cvs/namd/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1165	Thu Aug  1 20:41:27 2002
   Repository revision:	1.1165	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1090	Thu Aug  1 20:37:18 2002
   Repository revision:	1.1090	/home/cvs/namd/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 2, 19102 @ 16:58
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Tell the user that Settle doesn't implement atom-based pressure yet, which 
means that the PRESSURE output is wrong.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1166	Fri Aug  2 21:54:55 2002
   Repository revision:	1.1166	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 5, 19102 @ 18:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Controller.C 
Log Message:
Manually null-terminate strings for callback function.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1164	Mon Aug  5 23:19:04 2002
   Repository revision:	1.1164	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 6, 19102 @ 9:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	FreeEnergyParse.C 
Log Message:
Hacked to handle ', ", and * in atom names (DNA uses these).


===================================================================
File: FreeEnergyParse.C	Status: Up-to-date

   Working revision:	1.11	Tue Aug  6 14:26:11 2002
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/FreeEnergyParse.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.10)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.9)
	release-2-3-beta-2       	(revision: 1.9)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Monday August 12, 19102 @ 16:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeMgr.C 
Log Message:
Moved global forces initialization to ensure it always runs.


===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1052	Mon Aug 12 21:37:36 2002
   Repository revision:	1.1052	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1049)
	release-2-4              	(revision: 1.1049)
	release-2-4-beta-2       	(revision: 1.1049)
	release-2-4-beta-1       	(revision: 1.1048)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 16, 19102 @ 14:55
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv13948

Modified Files:
	Controller.C Controller.h HomePatch.C HomePatch.h 
	ReductionMgr.h Sequencer.C Sequencer.h 
Log Message:
Switched to half-step pressure, temperature, and kinetic energy.  Fixed
startup and velocity reassignment to get SHAKE pressure right (but group
pressure is still required when using SHAKE).  Add SMOOTH total energy
output, which adds twice the difference between centered and half-step
kinetic energy to eliminate short-time oscillations (but long-time will
likely not be conserved as well.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1165	Fri Aug 16 19:55:44 2002
   Repository revision:	1.1165	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1045	Fri Aug 16 19:55:44 2002
   Repository revision:	1.1045	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1100	Fri Aug 16 19:55:45 2002
   Repository revision:	1.1100	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1037	Fri Aug 16 19:55:45 2002
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1034)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1032)
	release-2-3-beta-1       	(revision: 1.1032)
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1031	Fri Aug 16 19:55:45 2002
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1027)
	release-2-4              	(revision: 1.1026)
	release-2-4-beta-2       	(revision: 1.1026)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1025)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1125	Fri Aug 16 19:55:45 2002
   Repository revision:	1.1125	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1038	Fri Aug 16 19:55:45 2002
   Repository revision:	1.1038	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1035)
	release-2-3              	(revision: 1.1035)
	release-2-3-beta-2       	(revision: 1.1035)
	release-2-3-beta-1       	(revision: 1.1035)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 19, 19102 @ 11:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv20951

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h Molecule.C 
Log Message:
Split FEP, LES, and pairwise interaction code to eliminate if statements.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1086	Mon Aug 19 16:36:54 2002
   Repository revision:	1.1086	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1058	Mon Aug 19 16:36:54 2002
   Repository revision:	1.1058	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1040	Mon Aug 19 16:36:54 2002
   Repository revision:	1.1040	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1078	Mon Aug 19 16:36:55 2002
   Repository revision:	1.1078	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 19, 19102 @ 13:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedUtil.C 
Log Message:
Added missing #undef NBTYPE lines.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1059	Mon Aug 19 18:44:35 2002
   Repository revision:	1.1059	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 19, 19102 @ 15:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Improved speed on non-IA64 and cleaned up compile warnings.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1087	Mon Aug 19 20:33:33 2002
   Repository revision:	1.1087	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 20, 19102 @ 9:12
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv23183

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h 
Log Message:
Added lambda_table and code to pipeline most loops on IA64.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1088	Tue Aug 20 14:12:30 2002
   Repository revision:	1.1088	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1060	Tue Aug 20 14:12:30 2002
   Repository revision:	1.1060	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1041	Tue Aug 20 14:12:30 2002
   Repository revision:	1.1041	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 20, 19102 @ 12:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv23594

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Major IA64 speedup, adding second loop to group-based distance check.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1089	Tue Aug 20 17:52:54 2002
   Repository revision:	1.1089	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 20, 19102 @ 16:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
fixedAtomsForces not required for constant pressure.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1167	Tue Aug 20 21:21:14 2002
   Repository revision:	1.1167	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday August 25, 19102 @ 15:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Make.depends 
Log Message:
Eliminated unnecessary energy calculations, use lookup table for VDW.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.90	Sun Aug 25 20:31:33 2002
   Repository revision:	1.90	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.88)
	release-2-4              	(revision: 1.88)
	release-2-4-beta-2       	(revision: 1.88)
	release-2-4-beta-1       	(revision: 1.86)
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Sunday August 25, 19102 @ 15:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedPair.C 
	ComputeNonbondedSelf.C ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h PatchTypes.h Sequencer.C 
Added Files:
	ComputeNonbondedBase2.h 
Log Message:
Eliminated unnecessary energy calculations, use lookup table for VDW.


===================================================================
File: ComputeNonbondedBase2.h	Status: Up-to-date

   Working revision:	1.1	Sat Aug 24 19:25:46 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase2.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1090	Sat Aug 24 21:35:36 2002
   Repository revision:	1.1090	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1027	Wed Aug 21 20:43:44 2002
   Repository revision:	1.1027	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1025)
	release-2-4              	(revision: 1.1025)
	release-2-4-beta-2       	(revision: 1.1025)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1024)
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1024)
	release-2-2-beta-3       	(revision: 1.1024)
	release-2-2-beta-2       	(revision: 1.1024)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1022	Wed Aug 21 20:43:44 2002
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1020)
	release-2-4              	(revision: 1.1020)
	release-2-4-beta-2       	(revision: 1.1020)
	release-2-4-beta-1       	(revision: 1.1020)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1019)
	release-2-2-beta-3       	(revision: 1.1019)
	release-2-2-beta-2       	(revision: 1.1019)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1061	Wed Aug 21 20:43:45 2002
   Repository revision:	1.1061	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1042	Wed Aug 21 20:43:45 2002
   Repository revision:	1.1042	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.15	Wed Aug 21 20:43:45 2002
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.14)
	release-2-4              	(revision: 1.14)
	release-2-4-beta-2       	(revision: 1.14)
	release-2-4-beta-1       	(revision: 1.14)
	release-2-3              	(revision: 1.14)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.14)
	release-2-2-beta-3       	(revision: 1.14)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.13)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.8)
	development-4            	(revision: 1.8)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1126	Wed Aug 21 20:43:45 2002
   Repository revision:	1.1126	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday August 25, 19102 @ 17:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedBase2.h 
	ComputeNonbondedUtil.C ComputeNonbondedUtil.h 
Log Message:
Improved cache performance by reordering table.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1091	Sun Aug 25 21:59:13 2002
   Repository revision:	1.1091	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase2.h	Status: Up-to-date

   Working revision:	1.2	Sun Aug 25 22:08:28 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase2.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1062	Sun Aug 25 21:51:19 2002
   Repository revision:	1.1062	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1043	Sun Aug 25 21:32:44 2002
   Repository revision:	1.1043	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 26, 19102 @ 9:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	main.C 
Log Message:
Fix for Win32.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1046	Mon Aug 26 14:04:13 2002
   Repository revision:	1.1046	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1044)
	release-2-4              	(revision: 1.1044)
	release-2-4-beta-2       	(revision: 1.1044)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1044)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1040)
	release-2-2-beta-3       	(revision: 1.1040)
	release-2-2-beta-2       	(revision: 1.1040)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 27, 19102 @ 1:25
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv8051

Modified Files:
	Rebalancer.C NamdCentLB.C 
Log Message:
fixed a bug in namdcentralLB when unload PME and all processors are PME processors which makes available pes is 0.


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.46	Tue Aug 27 06:25:41 2002
   Repository revision:	1.46	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.34)
	release-2-4              	(revision: 1.34)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.42	Tue Aug 27 06:25:41 2002
   Repository revision:	1.42	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Tuesday August 27, 19102 @ 13:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile 
Log Message:
Added CMK_OPTIMIZE=1 to all builds, which should eliminate verbose
"tracing not available" warnings.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1185	Tue Aug 27 16:22:42 2002
   Repository revision:	1.1185	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday August 27, 19102 @ 15:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	AlgSeven.C ComputePme.C NamdCentLB.C Rebalancer.C RefineOnly.C 
Log Message:
Eliminating unecessarily verbose load balancing output.


===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.39	Tue Aug 27 19:21:02 2002
   Repository revision:	1.39	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.29)
	release-2-4              	(revision: 1.29)
	release-2-4-beta-2       	(revision: 1.29)
	release-2-4-beta-1       	(revision: 1.29)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.67	Tue Aug 27 20:01:02 2002
   Repository revision:	1.67	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.43	Tue Aug 27 19:35:41 2002
   Repository revision:	1.43	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.47	Tue Aug 27 20:28:51 2002
   Repository revision:	1.47	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.34)
	release-2-4              	(revision: 1.34)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: RefineOnly.C     	Status: Up-to-date

   Working revision:	1.14	Tue Aug 27 20:20:42 2002
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/RefineOnly.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.12)
	release-2-4              	(revision: 1.12)
	release-2-4-beta-2       	(revision: 1.12)
	release-2-4-beta-1       	(revision: 1.12)
	release-2-3              	(revision: 1.12)
	release-2-3-beta-2       	(revision: 1.12)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)


****************************************
Date:	Tuesday August 27, 19102 @ 18:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Controller.C Controller.h 
Log Message:
Added TEMPAVG, TOTAL2, TOTAL3, and improved formatting on 80-column screens.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1166	Tue Aug 27 23:06:47 2002
   Repository revision:	1.1166	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1046	Tue Aug 27 20:54:31 2002
   Repository revision:	1.1046	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 28, 19102 @ 19:21
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv11577

Modified Files:
	LdbCoordinator.C 
Log Message:
fixed trace projection broken with CMK_OPTIMIZE=1.


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.66	Thu Aug 29 00:21:19 2002
   Repository revision:	1.66	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Friday August 30, 19102 @ 10:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedUtil.C 
Log Message:
Reordered to possibly avoid cache line overlap.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1063	Thu Aug 29 19:43:13 2002
   Repository revision:	1.1063	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 30, 19102 @ 15:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory puck.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Controller.C Sequencer.C 
Log Message:
Fixed periodic velocity reassignment to use half-step velocities properly.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1167	Fri Aug 30 20:06:07 2002
   Repository revision:	1.1167	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1127	Fri Aug 30 20:01:31 2002
   Repository revision:	1.1127	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday September 3, 19102 @ 16:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Controller.C 
Log Message:
Protect against initstep underflow in minimizer.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1168	Tue Sep  3 19:04:35 2002
   Repository revision:	1.1168	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 4, 19102 @ 14:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Whoops!  Fixed new exclusion code for fixed atoms and interaction energies.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1092	Wed Sep  4 18:59:46 2002
   Repository revision:	1.1092	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday September 7, 19102 @ 15:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Fixed bad algorithm in cluster finding code.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1079	Sat Sep  7 20:15:25 2002
   Repository revision:	1.1079	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday September 8, 19102 @ 16:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
Fixed stupid bug.  Pressure with rigid bonds should be correct now.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1101	Sun Sep  8 21:19:19 2002
   Repository revision:	1.1101	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 9, 19102 @ 10:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/doc
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/psfgen/doc

Modified Files:
	ug_macros.tex ug_psfgen.tex 
Log Message:
Imported psfgen 1.3 changes.


===================================================================
File: ug_macros.tex    	Status: Up-to-date

   Working revision:	1.2	Mon Sep  9 15:24:00 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/doc/ug_macros.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)

===================================================================
File: ug_psfgen.tex    	Status: Up-to-date

   Working revision:	1.4	Mon Sep  9 15:24:00 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/psfgen/doc/ug_psfgen.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)


****************************************
Date:	Monday September 9, 19102 @ 10:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/psfgen/src

Modified Files:
	tcl_psfgen.c topo_mol.c topo_mol.h 
Log Message:
Imported psfgen 1.3 changes.


===================================================================
File: tcl_psfgen.c     	Status: Up-to-date

   Working revision:	1.6	Mon Sep  9 15:24:01 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/psfgen/src/tcl_psfgen.c,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.2)

===================================================================
File: topo_mol.c       	Status: Up-to-date

   Working revision:	1.4	Mon Sep  9 15:24:01 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol.c,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.2)

===================================================================
File: topo_mol.h       	Status: Up-to-date

   Working revision:	1.4	Mon Sep  9 15:24:01 2002
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.2)


****************************************
Date:	Monday September 9, 19102 @ 10:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile announce.txt notes.txt 
Log Message:
Version updates - now 2.5b2


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1186	Mon Sep  9 15:28:10 2002
   Repository revision:	1.1186	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.22	Mon Sep  9 15:44:48 2002
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.21)
	release-2-4              	(revision: 1.20)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.18)
	release-2-3              	(revision: 1.17)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.37	Mon Sep  9 15:44:55 2002
   Repository revision:	1.37	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Monday September 9, 19102 @ 10:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	Makefile namd_macros.tex 
Log Message:
Version updates - now 2.5b2


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.28	Mon Sep  9 15:28:37 2002
   Repository revision:	1.28	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.27)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.24)
	release-2-4-beta-1       	(revision: 1.21)
	release-2-3              	(revision: 1.20)
	release-2-3-beta-2       	(revision: 1.19)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: namd_macros.tex  	Status: Up-to-date

   Working revision:	1.7	Mon Sep  9 15:45:46 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/ug/namd_macros.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.6)
	release-2-4-beta-2       	(revision: 1.6)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Tuesday September 10, 19102 @ 1:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeMap.C ComputeMap.h HomePatch.C HomePatch.h 
	LdbCoordinator.C PatchMap.C PatchMap.h PatchMap.inl 
	RecBisection.C SimParameters.C SimParameters.h WorkDistrib.C 
Log Message:
Allow two-away neighbors on any combination of dimensions with new options
twoAwayX, twoAwayY, twoAwayZ (all boolean).  Eventually turn this on when
more patches are needed automatically.  Off by default since criteria for
this helping performance aren't well understood yet.


===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1024	Tue Sep 10 04:32:58 2002
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1023)
	release-2-4              	(revision: 1.1023)
	release-2-4-beta-2       	(revision: 1.1023)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1023)
	release-2-3-beta-2       	(revision: 1.1023)
	release-2-3-beta-1       	(revision: 1.1023)
	release-2-2              	(revision: 1.1023)
	release-2-2-beta-3       	(revision: 1.1023)
	release-2-2-beta-2       	(revision: 1.1023)
	release-2-2-beta-1       	(revision: 1.1023)
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1013)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1028	Tue Sep 10 04:30:12 2002
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1026)
	release-2-4              	(revision: 1.1026)
	release-2-4-beta-2       	(revision: 1.1026)
	release-2-4-beta-1       	(revision: 1.1026)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1102	Tue Sep 10 01:51:37 2002
   Repository revision:	1.1102	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1038	Tue Sep 10 01:47:23 2002
   Repository revision:	1.1038	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1034)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1032)
	release-2-3-beta-1       	(revision: 1.1032)
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.67	Tue Sep 10 06:20:07 2002
   Repository revision:	1.67	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1032	Tue Sep 10 05:25:54 2002
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1030)
	release-2-3              	(revision: 1.1030)
	release-2-3-beta-2       	(revision: 1.1030)
	release-2-3-beta-1       	(revision: 1.1030)
	release-2-2              	(revision: 1.1028)
	release-2-2-beta-3       	(revision: 1.1028)
	release-2-2-beta-2       	(revision: 1.1028)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1021	Tue Sep 10 04:35:28 2002
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1019)
	release-2-4              	(revision: 1.1019)
	release-2-4-beta-2       	(revision: 1.1019)
	release-2-4-beta-1       	(revision: 1.1019)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1018)
	release-2-2              	(revision: 1.1018)
	release-2-2-beta-3       	(revision: 1.1018)
	release-2-2-beta-2       	(revision: 1.1018)
	release-2-2-beta-1       	(revision: 1.1018)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1016)
	release-2-1-beta-1       	(revision: 1.1014)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.inl     	Status: Up-to-date

   Working revision:	1.7	Tue Sep 10 04:47:48 2002
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/PatchMap.inl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.6)
	release-2-4-beta-2       	(revision: 1.6)
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.1)

===================================================================
File: RecBisection.C   	Status: Up-to-date

   Working revision:	1.15	Tue Sep 10 04:23:28 2002
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/src/RecBisection.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.11)
	release-2-4-beta-2       	(revision: 1.11)
	release-2-4-beta-1       	(revision: 1.11)
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1168	Tue Sep 10 06:14:30 2002
   Repository revision:	1.1168	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1091	Tue Sep 10 06:12:41 2002
   Repository revision:	1.1091	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1131	Tue Sep 10 06:17:05 2002
   Repository revision:	1.1131	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday September 10, 19102 @ 11:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	CollectionMaster.C Output.C common.C dcdlib.C 
Log Message:
Improved backup file behavior - now checks return value of rename call.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1030	Tue Sep 10 15:58:58 2002
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1029)
	release-2-4              	(revision: 1.1028)
	release-2-4-beta-2       	(revision: 1.1028)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.46	Tue Sep 10 15:58:02 2002
   Repository revision:	1.46	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.43)
	release-2-4              	(revision: 1.41)
	release-2-4-beta-2       	(revision: 1.41)
	release-2-4-beta-1       	(revision: 1.41)
	release-2-3              	(revision: 1.40)
	release-2-3-beta-2       	(revision: 1.40)
	release-2-3-beta-1       	(revision: 1.39)
	release-2-2              	(revision: 1.37)
	release-2-2-beta-3       	(revision: 1.37)
	release-2-2-beta-2       	(revision: 1.35)
	release-2-2-beta-1       	(revision: 1.35)
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1041	Tue Sep 10 16:13:38 2002
   Repository revision:	1.1041	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1037)
	release-2-4-beta-2       	(revision: 1.1037)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1036)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1035)
	release-2-2-beta-3       	(revision: 1.1035)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.23	Tue Sep 10 16:01:17 2002
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.19)
	release-2-4              	(revision: 1.19)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.19)
	release-2-3              	(revision: 1.19)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Tuesday September 10, 19102 @ 16:00
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv22327

Modified Files:
	HomePatch.C HomePatch.h LdbCoordinator.C ProxyPatch.C 
	ProxyPatch.h 
Log Message:
added using persistent comm for proxyPatch's recvResult(). Also instead of destorying all persistent comm at one time, allow destorying individule persistent handler at a time. (need to compile with latest Charm++)


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1103	Tue Sep 10 21:00:24 2002
   Repository revision:	1.1103	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1039	Tue Sep 10 21:00:24 2002
   Repository revision:	1.1039	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1034)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1032)
	release-2-3-beta-1       	(revision: 1.1032)
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.68	Tue Sep 10 21:00:24 2002
   Repository revision:	1.68	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)

===================================================================
File: ProxyPatch.C     	Status: Up-to-date

   Working revision:	1.1035	Tue Sep 10 21:00:25 2002
   Repository revision:	1.1035	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1032)
	release-2-4              	(revision: 1.1032)
	release-2-4-beta-2       	(revision: 1.1032)
	release-2-4-beta-1       	(revision: 1.1032)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1032)
	release-2-3-beta-1       	(revision: 1.1031)
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1023)
	release-2-1-beta-4       	(revision: 1.1023)
	release-2-1-beta-3       	(revision: 1.1023)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1016)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1006)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ProxyPatch.h     	Status: Up-to-date

   Working revision:	1.1005	Tue Sep 10 21:00:25 2002
   Repository revision:	1.1005	/Projects/namd2/cvsroot/namd2/src/ProxyPatch.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1004)
	release-2-4              	(revision: 1.1004)
	release-2-4-beta-2       	(revision: 1.1004)
	release-2-4-beta-1       	(revision: 1.1004)
	release-2-3              	(revision: 1.1004)
	release-2-3-beta-2       	(revision: 1.1004)
	release-2-3-beta-1       	(revision: 1.1004)
	release-2-2              	(revision: 1.1003)
	release-2-2-beta-3       	(revision: 1.1003)
	release-2-2-beta-2       	(revision: 1.1003)
	release-2-2-beta-1       	(revision: 1.1003)
	release-2-1              	(revision: 1.1002)
	release-2-1-beta-4       	(revision: 1.1002)
	release-2-1-beta-3       	(revision: 1.1002)
	release-2-1-beta-2       	(revision: 1.1002)
	release-2-1-beta-1       	(revision: 1.1000)
	release-2-0-pre-charm-syntax	(revision: 1.1000)
	release-2-0              	(revision: 1.1000)
	release-2-0-beta-3       	(revision: 1.1000)
	release-2-0-beta-2       	(revision: 1.1000)
	release-alpha-1          	(revision: 1.1000)
	development-4            	(revision: 1.1000)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 12, 19102 @ 20:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Settle.h 
Log Message:
Fixed misleading declaration to match definition in Settle.C.


===================================================================
File: Settle.h         	Status: Up-to-date

   Working revision:	1.2	Fri Sep 13 01:37:20 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Settle.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday September 12, 19102 @ 20:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Settle.C 
Log Message:
Changed "dt > 0" to "dt != 0" to correctly handle startup.


===================================================================
File: Settle.C         	Status: Up-to-date

   Working revision:	1.2	Fri Sep 13 01:42:39 2002
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/Settle.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday September 12, 19102 @ 21:00
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Use Settle by default, higher tolerance for rigid bonds.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1169	Fri Sep 13 01:55:53 2002
   Repository revision:	1.1169	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 20, 19102 @ 9:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Eliminated unnecessary errors/warnings about useSettle.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1170	Fri Sep 20 14:14:18 2002
   Repository revision:	1.1170	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 20, 19102 @ 10:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile 
Log Message:
Added build date/user/machine message on startup.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1187	Fri Sep 20 15:04:43 2002
   Repository revision:	1.1187	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday September 20, 19102 @ 10:12
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	main.C 
Log Message:
Added build date/user/machine message on startup.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1047	Fri Sep 20 15:08:33 2002
   Repository revision:	1.1047	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1044)
	release-2-4              	(revision: 1.1044)
	release-2-4-beta-2       	(revision: 1.1044)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1044)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1040)
	release-2-2-beta-3       	(revision: 1.1040)
	release-2-2-beta-2       	(revision: 1.1040)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday November 5, 19102 @ 19:24
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2

Modified Files:
	Make.depends 
Log Message:
Added pressure profile code and associated documentation.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.91	Tue Oct 22 05:46:07 2002
   Repository revision:	1.91	/home/cvs/namd/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.88)
	release-2-4              	(revision: 1.88)
	release-2-4-beta-2       	(revision: 1.88)
	release-2-4-beta-1       	(revision: 1.86)
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Tuesday November 5, 19102 @ 19:24
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeAngles.C ComputeAngles.h ComputeBonds.C ComputeBonds.h 
	ComputeDihedrals.C ComputeDihedrals.h ComputeHomeTuples.h 
	ComputeImpropers.C ComputeImpropers.h ComputeNonbondedBase.h 
	ComputeNonbondedBase2.h ComputeNonbondedPair.C 
	ComputeNonbondedPair.h ComputeNonbondedSelf.C 
	ComputeNonbondedSelf.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h Controller.C Controller.h Sequencer.C 
	Sequencer.h SimParameters.C SimParameters.h 
Added Files:
	PressureProfile.h 
Log Message:
Added pressure profile code and associated documentation.


===================================================================
File: PressureProfile.h	Status: Up-to-date

   Working revision:	1.1	Tue Oct 22 05:46:56 2002
   Repository revision:	1.1	/home/cvs/namd/cvsroot/namd2/src/PressureProfile.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeAngles.C  	Status: Up-to-date

   Working revision:	1.1023	Tue Oct 29 22:23:13 2002
   Repository revision:	1.1023	/home/cvs/namd/cvsroot/namd2/src/ComputeAngles.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1021)
	release-2-4              	(revision: 1.1021)
	release-2-4-beta-2       	(revision: 1.1021)
	release-2-4-beta-1       	(revision: 1.1021)
	release-2-3              	(revision: 1.1021)
	release-2-3-beta-2       	(revision: 1.1021)
	release-2-3-beta-1       	(revision: 1.1021)
	release-2-2              	(revision: 1.1021)
	release-2-2-beta-3       	(revision: 1.1021)
	release-2-2-beta-2       	(revision: 1.1021)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeAngles.h  	Status: Up-to-date

   Working revision:	1.1019	Tue Oct 29 22:23:13 2002
   Repository revision:	1.1019	/home/cvs/namd/cvsroot/namd2/src/ComputeAngles.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1017)
	release-2-4              	(revision: 1.1017)
	release-2-4-beta-2       	(revision: 1.1017)
	release-2-4-beta-1       	(revision: 1.1017)
	release-2-3              	(revision: 1.1017)
	release-2-3-beta-2       	(revision: 1.1017)
	release-2-3-beta-1       	(revision: 1.1017)
	release-2-2              	(revision: 1.1017)
	release-2-2-beta-3       	(revision: 1.1017)
	release-2-2-beta-2       	(revision: 1.1017)
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1010)
	release-2-0-pre-charm-syntax	(revision: 1.1008)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.C   	Status: Up-to-date

   Working revision:	1.1019	Tue Oct 29 22:23:13 2002
   Repository revision:	1.1019	/home/cvs/namd/cvsroot/namd2/src/ComputeBonds.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1017)
	release-2-4              	(revision: 1.1017)
	release-2-4-beta-2       	(revision: 1.1017)
	release-2-4-beta-1       	(revision: 1.1017)
	release-2-3              	(revision: 1.1017)
	release-2-3-beta-2       	(revision: 1.1017)
	release-2-3-beta-1       	(revision: 1.1017)
	release-2-2              	(revision: 1.1017)
	release-2-2-beta-3       	(revision: 1.1017)
	release-2-2-beta-2       	(revision: 1.1017)
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1014)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1009)
	release-2-0-beta-2       	(revision: 1.1008)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeBonds.h   	Status: Up-to-date

   Working revision:	1.1017	Tue Oct 29 22:23:13 2002
   Repository revision:	1.1017	/home/cvs/namd/cvsroot/namd2/src/ComputeBonds.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1015)
	release-2-4              	(revision: 1.1015)
	release-2-4-beta-2       	(revision: 1.1015)
	release-2-4-beta-1       	(revision: 1.1015)
	release-2-3              	(revision: 1.1015)
	release-2-3-beta-2       	(revision: 1.1015)
	release-2-3-beta-1       	(revision: 1.1015)
	release-2-2              	(revision: 1.1015)
	release-2-2-beta-3       	(revision: 1.1015)
	release-2-2-beta-2       	(revision: 1.1015)
	release-2-2-beta-1       	(revision: 1.1014)
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.C	Status: Up-to-date

   Working revision:	1.1024	Tue Oct 29 22:23:13 2002
   Repository revision:	1.1024	/home/cvs/namd/cvsroot/namd2/src/ComputeDihedrals.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1022)
	release-2-4              	(revision: 1.1022)
	release-2-4-beta-2       	(revision: 1.1022)
	release-2-4-beta-1       	(revision: 1.1022)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1021)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1016)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeDihedrals.h	Status: Up-to-date

   Working revision:	1.1016	Tue Oct 29 22:23:13 2002
   Repository revision:	1.1016	/home/cvs/namd/cvsroot/namd2/src/ComputeDihedrals.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1014)
	release-2-4              	(revision: 1.1014)
	release-2-4-beta-2       	(revision: 1.1014)
	release-2-4-beta-1       	(revision: 1.1014)
	release-2-3              	(revision: 1.1014)
	release-2-3-beta-2       	(revision: 1.1014)
	release-2-3-beta-1       	(revision: 1.1014)
	release-2-2              	(revision: 1.1014)
	release-2-2-beta-3       	(revision: 1.1014)
	release-2-2-beta-2       	(revision: 1.1014)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1036	Tue Oct 29 22:23:13 2002
   Repository revision:	1.1036	/home/cvs/namd/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1033)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1033)
	release-2-3-beta-2       	(revision: 1.1033)
	release-2-3-beta-1       	(revision: 1.1033)
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.C	Status: Up-to-date

   Working revision:	1.1022	Tue Oct 29 22:23:14 2002
   Repository revision:	1.1022	/home/cvs/namd/cvsroot/namd2/src/ComputeImpropers.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1020)
	release-2-4              	(revision: 1.1020)
	release-2-4-beta-2       	(revision: 1.1020)
	release-2-4-beta-1       	(revision: 1.1020)
	release-2-3              	(revision: 1.1020)
	release-2-3-beta-2       	(revision: 1.1020)
	release-2-3-beta-1       	(revision: 1.1020)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1010)
	release-2-0              	(revision: 1.1010)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1009)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeImpropers.h	Status: Up-to-date

   Working revision:	1.1016	Tue Oct 29 22:23:14 2002
   Repository revision:	1.1016	/home/cvs/namd/cvsroot/namd2/src/ComputeImpropers.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1014)
	release-2-4              	(revision: 1.1014)
	release-2-4-beta-2       	(revision: 1.1014)
	release-2-4-beta-1       	(revision: 1.1014)
	release-2-3              	(revision: 1.1014)
	release-2-3-beta-2       	(revision: 1.1014)
	release-2-3-beta-1       	(revision: 1.1014)
	release-2-2              	(revision: 1.1014)
	release-2-2-beta-3       	(revision: 1.1014)
	release-2-2-beta-2       	(revision: 1.1014)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1093	Tue Oct 29 22:23:14 2002
   Repository revision:	1.1093	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase2.h	Status: Up-to-date

   Working revision:	1.3	Tue Oct 29 22:23:14 2002
   Repository revision:	1.3	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedBase2.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1028	Tue Oct 29 22:23:14 2002
   Repository revision:	1.1028	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1025)
	release-2-4              	(revision: 1.1025)
	release-2-4-beta-2       	(revision: 1.1025)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1024)
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1024)
	release-2-2-beta-3       	(revision: 1.1024)
	release-2-2-beta-2       	(revision: 1.1024)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1014	Tue Oct 29 22:23:14 2002
   Repository revision:	1.1014	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1013)
	release-2-4              	(revision: 1.1013)
	release-2-4-beta-2       	(revision: 1.1013)
	release-2-4-beta-1       	(revision: 1.1013)
	release-2-3              	(revision: 1.1013)
	release-2-3-beta-2       	(revision: 1.1013)
	release-2-3-beta-1       	(revision: 1.1013)
	release-2-2              	(revision: 1.1013)
	release-2-2-beta-3       	(revision: 1.1013)
	release-2-2-beta-2       	(revision: 1.1013)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1023	Tue Oct 29 22:23:14 2002
   Repository revision:	1.1023	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1020)
	release-2-4              	(revision: 1.1020)
	release-2-4-beta-2       	(revision: 1.1020)
	release-2-4-beta-1       	(revision: 1.1020)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1019)
	release-2-2-beta-3       	(revision: 1.1019)
	release-2-2-beta-2       	(revision: 1.1019)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.1012	Tue Oct 29 22:23:14 2002
   Repository revision:	1.1012	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1011)
	release-2-4              	(revision: 1.1011)
	release-2-4-beta-2       	(revision: 1.1011)
	release-2-4-beta-1       	(revision: 1.1011)
	release-2-3              	(revision: 1.1011)
	release-2-3-beta-2       	(revision: 1.1011)
	release-2-3-beta-1       	(revision: 1.1011)
	release-2-2              	(revision: 1.1011)
	release-2-2-beta-3       	(revision: 1.1011)
	release-2-2-beta-2       	(revision: 1.1011)
	release-2-2-beta-1       	(revision: 1.1011)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1064	Tue Oct 29 22:23:14 2002
   Repository revision:	1.1064	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1044	Tue Oct 29 22:23:14 2002
   Repository revision:	1.1044	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1169	Tue Oct 29 22:23:14 2002
   Repository revision:	1.1169	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1047	Tue Oct 29 22:23:14 2002
   Repository revision:	1.1047	/home/cvs/namd/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1128	Tue Oct 29 22:23:14 2002
   Repository revision:	1.1128	/home/cvs/namd/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1039	Tue Oct 29 22:23:14 2002
   Repository revision:	1.1039	/home/cvs/namd/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1035)
	release-2-3              	(revision: 1.1035)
	release-2-3-beta-2       	(revision: 1.1035)
	release-2-3-beta-1       	(revision: 1.1035)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1171	Wed Nov  6 00:48:43 2002
   Repository revision:	1.1171	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1092	Tue Oct 29 22:23:14 2002
   Repository revision:	1.1092	/home/cvs/namd/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday November 5, 19102 @ 19:24
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Added pressure profile code and associated documentation.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.50	Wed Nov  6 01:21:20 2002
   Repository revision:	1.50	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Monday November 11, 19102 @ 13:11
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ScriptTcl.C ScriptTcl.h 
Log Message:
Added a "moveallby" Tcl scripting command to move all atoms by a given
vector.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.38	Mon Nov 11 19:00:30 2002
   Repository revision:	1.38	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.21	Mon Nov 11 18:11:16 2002
   Repository revision:	1.21	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.17)
	release-2-4-beta-2       	(revision: 1.17)
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.16)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Tuesday November 12, 19102 @ 12:26
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	PatchMgr.C PatchMgr.ci PatchMgr.h ScriptTcl.C 
Log Message:
The moveallby command should actually work now.


===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1029	Tue Nov 12 18:18:49 2002
   Repository revision:	1.1029	/home/cvs/namd/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1024)
	release-2-4              	(revision: 1.1023)
	release-2-4-beta-2       	(revision: 1.1023)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.ci      	Status: Up-to-date

   Working revision:	1.1010	Tue Nov 12 17:42:33 2002
   Repository revision:	1.1010	/home/cvs/namd/cvsroot/namd2/src/PatchMgr.ci,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1008)
	release-2-4              	(revision: 1.1008)
	release-2-4-beta-2       	(revision: 1.1008)
	release-2-4-beta-1       	(revision: 1.1008)
	release-2-3              	(revision: 1.1008)
	release-2-3-beta-2       	(revision: 1.1008)
	release-2-3-beta-1       	(revision: 1.1008)
	release-2-2              	(revision: 1.1008)
	release-2-2-beta-3       	(revision: 1.1008)
	release-2-2-beta-2       	(revision: 1.1008)
	release-2-2-beta-1       	(revision: 1.1008)
	release-2-1              	(revision: 1.1008)
	release-2-1-beta-4       	(revision: 1.1008)
	release-2-1-beta-3       	(revision: 1.1008)
	release-2-1-beta-2       	(revision: 1.1008)
	release-2-1-beta-1       	(revision: 1.1006)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1018	Tue Nov 12 17:45:40 2002
   Repository revision:	1.1018	/home/cvs/namd/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1016)
	release-2-4              	(revision: 1.1016)
	release-2-4-beta-2       	(revision: 1.1016)
	release-2-4-beta-1       	(revision: 1.1016)
	release-2-3              	(revision: 1.1016)
	release-2-3-beta-2       	(revision: 1.1016)
	release-2-3-beta-1       	(revision: 1.1016)
	release-2-2              	(revision: 1.1016)
	release-2-2-beta-3       	(revision: 1.1016)
	release-2-2-beta-2       	(revision: 1.1016)
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.39	Tue Nov 12 17:18:16 2002
   Repository revision:	1.39	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Thursday December 5, 19102 @ 0:12
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeMgr.C GlobalMaster.h GlobalMasterIMD.C 
	GlobalMasterIMD.h IMDOutput.C IMDOutput.h SimParameters.C 
Log Message:
Made GlobalMasterIMD handle all IMD communication itself, including the
sending of coordinates and energies.  IMDignore still works and now ignores
IMDkill as well, as would seem to be the intention.  Much less replicated
code this way, and we should soon be able to handle multiple IMD connections.


===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1053	Thu Dec  5 05:43:06 2002
   Repository revision:	1.1053	/home/cvs/namd/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1049)
	release-2-4              	(revision: 1.1049)
	release-2-4-beta-2       	(revision: 1.1049)
	release-2-4-beta-1       	(revision: 1.1048)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: GlobalMaster.h   	Status: Up-to-date

   Working revision:	1.4	Thu Dec  5 01:55:38 2002
   Repository revision:	1.4	/home/cvs/namd/cvsroot/namd2/src/GlobalMaster.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)

===================================================================
File: GlobalMasterIMD.C	Status: Up-to-date

   Working revision:	1.3	Thu Dec  5 06:00:27 2002
   Repository revision:	1.3	/home/cvs/namd/cvsroot/namd2/src/GlobalMasterIMD.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)

===================================================================
File: GlobalMasterIMD.h	Status: Up-to-date

   Working revision:	1.2	Thu Dec  5 06:00:32 2002
   Repository revision:	1.2	/home/cvs/namd/cvsroot/namd2/src/GlobalMasterIMD.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)

===================================================================
File: IMDOutput.C      	Status: Up-to-date

   Working revision:	1.13	Thu Dec  5 05:37:47 2002
   Repository revision:	1.13	/home/cvs/namd/cvsroot/namd2/src/IMDOutput.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.12)
	release-2-4              	(revision: 1.12)
	release-2-4-beta-2       	(revision: 1.12)
	release-2-4-beta-1       	(revision: 1.12)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.10)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.10)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)

===================================================================
File: IMDOutput.h      	Status: Up-to-date

   Working revision:	1.11	Thu Dec  5 06:09:14 2002
   Repository revision:	1.11	/home/cvs/namd/cvsroot/namd2/src/IMDOutput.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.10)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.9)
	release-2-3-beta-2       	(revision: 1.9)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1172	Thu Dec  5 05:50:47 2002
   Repository revision:	1.1172	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday December 5, 19102 @ 6:57
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/tmp/cvs-serv27983

Modified Files:
	GlobalMasterIMD.h 
Log Message:
Some compilers don't like confusing a struct with a typedef struct.


===================================================================
File: GlobalMasterIMD.h	Status: Up-to-date

   Working revision:	1.3	Thu Dec  5 12:57:27 2002
   Repository revision:	1.3	/home/cvs/namd/cvsroot/namd2/src/GlobalMasterIMD.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)


****************************************
Date:	Thursday December 5, 19102 @ 7:29
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/tmp/cvs-serv28127

Modified Files:
	GlobalMasterIMD.C GlobalMasterIMD.h 
Log Message:
NAMD now supports multiple simultaneous IMD connections.


===================================================================
File: GlobalMasterIMD.C	Status: Up-to-date

   Working revision:	1.4	Thu Dec  5 13:29:31 2002
   Repository revision:	1.4	/home/cvs/namd/cvsroot/namd2/src/GlobalMasterIMD.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)

===================================================================
File: GlobalMasterIMD.h	Status: Up-to-date

   Working revision:	1.4	Thu Dec  5 13:29:31 2002
   Repository revision:	1.4	/home/cvs/namd/cvsroot/namd2/src/GlobalMasterIMD.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)


****************************************
Date:	Friday December 13, 19102 @ 14:18
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv7847

Modified Files:
	SimParameters.C SimParameters.h NamdCentLB.C 
Log Message:
added  "ldbUnloadRankZero" simparameter, which unload all rank 0 processors.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1173	Fri Dec 13 20:18:32 2002
   Repository revision:	1.1173	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1093	Fri Dec 13 20:18:32 2002
   Repository revision:	1.1093	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.44	Fri Dec 13 20:18:32 2002
   Repository revision:	1.44	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Friday December 13, 19102 @ 16:26
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Output.C Output.h SimParameters.C SimParameters.h dcdlib.C 
	dcdlib.h 
Log Message:
Added dcdUnitCell option for making NAMD write unit cell data to each dcd 
timestep.


===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.47	Fri Dec 13 22:24:29 2002
   Repository revision:	1.47	/home/cvs/namd/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.43)
	release-2-4              	(revision: 1.41)
	release-2-4-beta-2       	(revision: 1.41)
	release-2-4-beta-1       	(revision: 1.41)
	release-2-3              	(revision: 1.40)
	release-2-3-beta-2       	(revision: 1.40)
	release-2-3-beta-1       	(revision: 1.39)
	release-2-2              	(revision: 1.37)
	release-2-2-beta-3       	(revision: 1.37)
	release-2-2-beta-2       	(revision: 1.35)
	release-2-2-beta-1       	(revision: 1.35)
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)

===================================================================
File: Output.h         	Status: Up-to-date

   Working revision:	1.15	Fri Dec 13 21:21:15 2002
   Repository revision:	1.15	/home/cvs/namd/cvsroot/namd2/src/Output.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.14)
	release-2-4              	(revision: 1.13)
	release-2-4-beta-2       	(revision: 1.13)
	release-2-4-beta-1       	(revision: 1.13)
	release-2-3              	(revision: 1.13)
	release-2-3-beta-2       	(revision: 1.13)
	release-2-3-beta-1       	(revision: 1.13)
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.13)
	release-2-2-beta-2       	(revision: 1.13)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.12)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.4)
	development-4            	(revision: 1.4)
	development-3            	(revision: 1.1)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1174	Fri Dec 13 22:05:16 2002
   Repository revision:	1.1174	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1094	Fri Dec 13 21:32:50 2002
   Repository revision:	1.1094	/home/cvs/namd/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.24	Fri Dec 13 21:19:55 2002
   Repository revision:	1.24	/home/cvs/namd/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.19)
	release-2-4              	(revision: 1.19)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.19)
	release-2-3              	(revision: 1.19)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)

===================================================================
File: dcdlib.h         	Status: Up-to-date

   Working revision:	1.6	Fri Dec 13 21:40:20 2002
   Repository revision:	1.6	/home/cvs/namd/cvsroot/namd2/src/dcdlib.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Friday December 13, 19102 @ 16:30
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_io.tex 
Log Message:
Added docs for dcdUnitCell option.


===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.18	Fri Dec 13 22:29:54 2002
   Repository revision:	1.18	/home/cvs/namd/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.16)
	release-2-4-beta-2       	(revision: 1.16)
	release-2-4-beta-1       	(revision: 1.16)
	release-2-3              	(revision: 1.15)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.12)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.12)
	release-2-1-beta-2       	(revision: 1.12)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Saturday December 14, 19102 @ 14:51
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	PatchMgr.C PatchMgr.ci PatchMgr.h ScriptTcl.C 
Log Message:
The 'coorfile read' command now reads unit cell information when it
detects it in the dcd file.  There's currently no formal mechanism for
determining whether such information was actually set by the file, so
we have to use a heuristic for now to determine if the data is valid.


===================================================================
File: PatchMgr.C       	Status: Up-to-date

   Working revision:	1.1030	Sat Dec 14 20:20:53 2002
   Repository revision:	1.1030	/home/cvs/namd/cvsroot/namd2/src/PatchMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1024)
	release-2-4              	(revision: 1.1023)
	release-2-4-beta-2       	(revision: 1.1023)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.ci      	Status: Up-to-date

   Working revision:	1.1011	Sat Dec 14 19:10:23 2002
   Repository revision:	1.1011	/home/cvs/namd/cvsroot/namd2/src/PatchMgr.ci,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1008)
	release-2-4              	(revision: 1.1008)
	release-2-4-beta-2       	(revision: 1.1008)
	release-2-4-beta-1       	(revision: 1.1008)
	release-2-3              	(revision: 1.1008)
	release-2-3-beta-2       	(revision: 1.1008)
	release-2-3-beta-1       	(revision: 1.1008)
	release-2-2              	(revision: 1.1008)
	release-2-2-beta-3       	(revision: 1.1008)
	release-2-2-beta-2       	(revision: 1.1008)
	release-2-2-beta-1       	(revision: 1.1008)
	release-2-1              	(revision: 1.1008)
	release-2-1-beta-4       	(revision: 1.1008)
	release-2-1-beta-3       	(revision: 1.1008)
	release-2-1-beta-2       	(revision: 1.1008)
	release-2-1-beta-1       	(revision: 1.1006)
	release-2-0-pre-charm-syntax	(revision: 1.1004)
	release-2-0              	(revision: 1.1004)
	release-2-0-beta-3       	(revision: 1.1004)
	release-2-0-beta-2       	(revision: 1.1004)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1019	Sat Dec 14 20:17:35 2002
   Repository revision:	1.1019	/home/cvs/namd/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1016)
	release-2-4              	(revision: 1.1016)
	release-2-4-beta-2       	(revision: 1.1016)
	release-2-4-beta-1       	(revision: 1.1016)
	release-2-3              	(revision: 1.1016)
	release-2-3-beta-2       	(revision: 1.1016)
	release-2-3-beta-1       	(revision: 1.1016)
	release-2-2              	(revision: 1.1016)
	release-2-2-beta-3       	(revision: 1.1016)
	release-2-2-beta-2       	(revision: 1.1016)
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.40	Sat Dec 14 20:44:51 2002
   Repository revision:	1.40	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Saturday December 14, 19102 @ 15:30
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/arch
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/arch

Modified Files:
	All-Unix.plugins 
Log Message:
Updates to use the latest plugin API.  The dcd plugin from the version NAMD
was building against had a bug in the unit cell reading code, so we don't
want to be compiling NAMD with plugins unless it's against the newest version.
I've changed the plugin compile flags to point to VMD's plugin tree and
use the new directory layout; this way we can continue to build NAMD on
most platforms until all the plugins get rebuilt.


===================================================================
File: All-Unix.plugins 	Status: Up-to-date

   Working revision:	1.2	Sat Dec 14 21:24:40 2002
   Repository revision:	1.2	/home/cvs/namd/cvsroot/namd2/arch/All-Unix.plugins,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Saturday December 14, 19102 @ 15:30
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ScriptTcl.C 
Log Message:
Updates to use the latest plugin API.  The dcd plugin from the version NAMD
was building against had a bug in the unit cell reading code, so we don't
want to be compiling NAMD with plugins unless it's against the newest version.
I've changed the plugin compile flags to point to VMD's plugin tree and
use the new directory layout; this way we can continue to build NAMD on
most platforms until all the plugins get rebuilt.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.41	Sat Dec 14 21:25:57 2002
   Repository revision:	1.41	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Saturday December 14, 19102 @ 15:33
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ScriptTcl.C 
Log Message:
When skipping frames with coorfile skip, don't bother to read them in.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.42	Sat Dec 14 21:31:55 2002
   Repository revision:	1.42	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Sunday December 15, 19102 @ 15:02
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/tmp/cvs-serv969

Modified Files:
	ScriptTcl.C 
Log Message:
Hack around an apparent compiler bug on Lemieux (won't let me define a 
variable named C.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.43	Sun Dec 15 21:02:41 2002
   Repository revision:	1.43	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Wednesday December 18, 19102 @ 9:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeCylindricalBC.C ComputeRestraints.C 
	ComputeSphericalBC.C Vector.h 
Log Message:
Eliminated add, sub, mult, and div member functions from Vector class since
these are functionally identical to +=, -=, *=, and /= operators.


===================================================================
File: ComputeCylindricalBC.C	Status: Up-to-date

   Working revision:	1.12	Wed Dec 18 14:40:57 2002
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/ComputeCylindricalBC.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.11)
	release-2-4-beta-2       	(revision: 1.11)
	release-2-4-beta-1       	(revision: 1.11)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.6)

===================================================================
File: ComputeRestraints.C	Status: Up-to-date

   Working revision:	1.13	Wed Dec 18 14:41:06 2002
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/ComputeRestraints.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.12)
	release-2-4              	(revision: 1.11)
	release-2-4-beta-2       	(revision: 1.11)
	release-2-4-beta-1       	(revision: 1.11)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: ComputeSphericalBC.C	Status: Up-to-date

   Working revision:	1.6	Wed Dec 18 14:42:06 2002
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeSphericalBC.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)
	release-alpha-1          	(revision: 1.1)
	development-4            	(revision: 1.1)

===================================================================
File: Vector.h         	Status: Up-to-date

   Working revision:	1.1012	Wed Dec 18 14:39:57 2002
   Repository revision:	1.1012	/Projects/namd2/cvsroot/namd2/src/Vector.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1011)
	release-2-4              	(revision: 1.1010)
	release-2-4-beta-2       	(revision: 1.1010)
	release-2-4-beta-1       	(revision: 1.1010)
	release-2-3              	(revision: 1.1010)
	release-2-3-beta-2       	(revision: 1.1010)
	release-2-3-beta-1       	(revision: 1.1010)
	release-2-2              	(revision: 1.1010)
	release-2-2-beta-3       	(revision: 1.1010)
	release-2-2-beta-2       	(revision: 1.1010)
	release-2-2-beta-1       	(revision: 1.1010)
	release-2-1              	(revision: 1.1007)
	release-2-1-beta-4       	(revision: 1.1007)
	release-2-1-beta-3       	(revision: 1.1007)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 18, 19102 @ 9:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ScriptTcl.C 
Log Message:
Fixed non-plugins build.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.44	Wed Dec 18 15:36:26 2002
   Repository revision:	1.44	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Wednesday December 18, 19102 @ 16:14
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	CollectionMaster.C 
Log Message:
SIGINT gets handled while writing coordinate restart and dcd files; this 
should take care of the main cause of incomplete restart files.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1031	Wed Dec 18 22:12:19 2002
   Repository revision:	1.1031	/home/cvs/namd/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1029)
	release-2-4              	(revision: 1.1028)
	release-2-4-beta-2       	(revision: 1.1028)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 18, 19102 @ 16:46
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Parameters.C 
Log Message:
Search and replace tabs with eight spaces.


===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1028	Wed Dec 18 22:45:59 2002
   Repository revision:	1.1028	/home/cvs/namd/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1024)
	release-2-4              	(revision: 1.1024)
	release-2-4-beta-2       	(revision: 1.1024)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1020)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 18, 19102 @ 17:31
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Parameters.C 
Log Message:
Eliminated spurious warning messages when reading Charmm parameter files.
It is not abnormal for duplicate dihedral entries to appear, as long
as they occur consecutively.  The new code prints a warning only if
the duplicate entry follows a dihedral entry with different atom names.


===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1029	Wed Dec 18 23:26:13 2002
   Repository revision:	1.1029	/home/cvs/namd/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1024)
	release-2-4              	(revision: 1.1024)
	release-2-4-beta-2       	(revision: 1.1024)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1020)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 18, 19102 @ 17:38
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Parameters.C 
Log Message:
Oops - go ahead and print a warning about replacing charmm dihedral entries
when the periodicity is the same, even when they are consecutive, as this 
is an abnormal condition.


===================================================================
File: Parameters.C     	Status: Up-to-date

   Working revision:	1.1030	Wed Dec 18 23:36:10 2002
   Repository revision:	1.1030	/home/cvs/namd/cvsroot/namd2/src/Parameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1024)
	release-2-4              	(revision: 1.1024)
	release-2-4-beta-2       	(revision: 1.1024)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1022)
	release-2-3-beta-2       	(revision: 1.1022)
	release-2-3-beta-1       	(revision: 1.1020)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1010)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 18, 19102 @ 23:12
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeGlobal.C ComputeGlobal.h ComputeRestraints.C 
	Controller.C ReductionMgr.h Sequencer.C 
Log Message:
Simplified pressure code, just use lattice origin as zero-point for
net-force pressure calculation.


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.33	Wed Dec 18 23:07:29 2002
   Repository revision:	1.33	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.28)
	release-2-3-beta-2       	(revision: 1.28)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.23)
	release-2-2-beta-1       	(revision: 1.23)
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeGlobal.h  	Status: Up-to-date

   Working revision:	1.12	Wed Dec 18 19:48:40 2002
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.11)
	release-2-4-beta-2       	(revision: 1.11)
	release-2-4-beta-1       	(revision: 1.11)
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ComputeRestraints.C	Status: Up-to-date

   Working revision:	1.14	Wed Dec 18 23:23:35 2002
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/ComputeRestraints.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.12)
	release-2-4              	(revision: 1.11)
	release-2-4-beta-2       	(revision: 1.11)
	release-2-4-beta-1       	(revision: 1.11)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.8)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1170	Wed Dec 18 23:21:43 2002
   Repository revision:	1.1170	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1032	Wed Dec 18 23:21:56 2002
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1027)
	release-2-4              	(revision: 1.1026)
	release-2-4-beta-2       	(revision: 1.1026)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1025)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1129	Wed Dec 18 23:23:02 2002
   Repository revision:	1.1129	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday December 19, 19102 @ 10:43
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Check for pressureProfileOn before reading pressureProfileNonbonded variable.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1175	Thu Dec 19 16:41:44 2002
   Repository revision:	1.1175	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday December 19, 19102 @ 11:37
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	CollectionMaster.C Controller.C 
Log Message:
Moved SIGINT handling to the integrate() loop, so that all restart files
are written for a given timestep before NAMD quits (hopefully).


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1032	Thu Dec 19 17:29:26 2002
   Repository revision:	1.1032	/home/cvs/namd/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1029)
	release-2-4              	(revision: 1.1028)
	release-2-4-beta-2       	(revision: 1.1028)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1171	Thu Dec 19 17:32:13 2002
   Repository revision:	1.1171	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 25, 19102 @ 13:14
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Controller.C 
Log Message:
Commented out the SIGINT handling code for now; it wasn't getting
invoked on Lemieux and occasionally caused segfaults on exit in 
the net-xxx versions.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1172	Wed Dec 25 19:09:56 2002
   Repository revision:	1.1172	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday December 30, 19102 @ 11:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	dcdlib.C parm.C 
Log Message:
Removed explicit errno declarations, may conflict with errno.h.


===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.25	Mon Dec 30 17:09:12 2002
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.19)
	release-2-4              	(revision: 1.19)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.19)
	release-2-3              	(revision: 1.19)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)

===================================================================
File: parm.C           	Status: Up-to-date

   Working revision:	1.11	Mon Dec 30 17:09:25 2002
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/parm.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.9)
	release-2-4              	(revision: 1.6)
	release-2-4-beta-2       	(revision: 1.6)
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)


****************************************
Date:	Tuesday December 31, 19102 @ 8:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedUtil.C NamdOneTools.C ResizeArrayRaw.h 
	SimParameters.C 
Log Message:
Eliminated unnecessary declarations causing exception conflicts.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1065	Tue Dec 31 14:45:06 2002
   Repository revision:	1.1065	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdOneTools.C   	Status: Up-to-date

   Working revision:	1.27	Tue Dec 31 14:43:14 2002
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/src/NamdOneTools.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.26)
	release-2-3              	(revision: 1.26)
	release-2-3-beta-2       	(revision: 1.26)
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.25)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.23)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.16)
	release-2-0              	(revision: 1.16)
	release-2-0-beta-3       	(revision: 1.16)
	release-2-0-beta-2       	(revision: 1.14)
	release-alpha-1          	(revision: 1.9)
	development-4            	(revision: 1.7)

===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.15	Tue Dec 31 14:40:56 2002
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.14)
	release-2-4              	(revision: 1.14)
	release-2-4-beta-2       	(revision: 1.14)
	release-2-4-beta-1       	(revision: 1.14)
	release-2-3              	(revision: 1.14)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1176	Tue Dec 31 14:45:14 2002
   Repository revision:	1.1176	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday January 5, 19103 @ 20:48
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ScriptTcl.C 
Log Message:
Fixed typo.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.45	Mon Jan  6 02:47:21 2003
   Repository revision:	1.45	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Tuesday January 7, 19103 @ 16:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	All-Unix.plugins 
Log Message:
Search in old directory too.


===================================================================
File: All-Unix.plugins 	Status: Up-to-date

   Working revision:	1.3	Tue Jan  7 22:01:58 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/All-Unix.plugins,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday January 7, 19103 @ 16:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	All-Unix.plugins 
Log Message:
Use NAMD libraries.


===================================================================
File: All-Unix.plugins 	Status: Up-to-date

   Working revision:	1.4	Tue Jan  7 22:06:17 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/All-Unix.plugins,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday January 7, 19103 @ 16:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedUtil.C SimParameters.C 
Log Message:
Put back erfc definition for WIN32 (which uses erf.C).


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1066	Tue Jan  7 22:44:16 2003
   Repository revision:	1.1066	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1177	Tue Jan  7 22:44:35 2003
   Repository revision:	1.1177	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 7, 19103 @ 18:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedUtil.C SimParameters.C 
Log Message:
Added extern "C" to erfc() declarations.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1067	Wed Jan  8 00:04:47 2003
   Repository revision:	1.1067	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1178	Wed Jan  8 00:04:37 2003
   Repository revision:	1.1178	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 7, 19103 @ 20:31
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedPair.C 
Log Message:
Fixed bug in Molly with periodic boundary conditions.


===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1029	Wed Jan  8 02:27:34 2003
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1025)
	release-2-4              	(revision: 1.1025)
	release-2-4-beta-2       	(revision: 1.1025)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1024)
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1024)
	release-2-2-beta-3       	(revision: 1.1024)
	release-2-2-beta-2       	(revision: 1.1024)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 14, 19103 @ 16:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	announce.txt license.txt README.txt 
Log Message:
Changed name of group to Theoretical and Computational Biophysics Group


===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.23	Tue Jan 14 22:14:24 2003
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.21)
	release-2-4              	(revision: 1.20)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.18)
	release-2-3              	(revision: 1.17)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: license.txt      	Status: Up-to-date

   Working revision:	1.5	Tue Jan 14 22:21:25 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/license.txt,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.2)
	release-2-1-beta-1       	(revision: 1.1)

===================================================================
File: README.txt       	Status: Up-to-date

   Working revision:	1.11	Tue Jan 14 22:16:54 2003
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/README.txt,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.10)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.10)
	release-2-3-beta-2       	(revision: 1.10)
	release-2-3-beta-1       	(revision: 1.10)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.2)


****************************************
Date:	Monday January 20, 19103 @ 0:12
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv15699

Modified Files:
	LdbCoordinator.C 
Log Message:
updated with changes in Charm++ about the API of using LB user data.(guarded with CHARM_VERSION)


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.69	Mon Jan 20 06:12:57 2003
   Repository revision:	1.69	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Thursday January 23, 19103 @ 15:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Controller.C Controller.h 
Log Message:
Made minimization more forgiving of checksum errors, and limited growth
rate of initial step size to a factor of 4 per cycle.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1173	Thu Jan 23 21:09:24 2003
   Repository revision:	1.1173	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1048	Thu Jan 23 20:59:36 2003
   Repository revision:	1.1048	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday January 23, 19103 @ 23:17
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv23839

Modified Files:
	AIX-RS6000-xlC.arch 
Log Message:
added command line option to eliminate the duplciate symbol warnin


===================================================================
File: AIX-RS6000-xlC.arch	Status: Up-to-date

   Working revision:	1.5	Fri Jan 24 05:17:29 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000-xlC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)


****************************************
Date:	Monday January 27, 19103 @ 16:40
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	ComputeNonbondedBase.h WorkDistrib.C common.h 
Log Message:
Created int64 typdef and used when calculating pair counts when splitting
computes, since in some situations 50*numAtoms^2 can overflow an int32.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1094	Mon Jan 27 22:13:10 2003
   Repository revision:	1.1094	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1132	Mon Jan 27 22:13:19 2003
   Repository revision:	1.1132	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1038	Mon Jan 27 22:23:39 2003
   Repository revision:	1.1038	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1036)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1036)
	release-2-3              	(revision: 1.1035)
	release-2-3-beta-2       	(revision: 1.1035)
	release-2-3-beta-1       	(revision: 1.1035)
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1024)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 27, 19103 @ 16:55
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
More int64, eliminated warning.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1133	Mon Jan 27 22:53:00 2003
   Repository revision:	1.1133	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 27, 19103 @ 17:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Added checks for cellOrigin without periodic boundary conditions.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1179	Mon Jan 27 23:06:24 2003
   Repository revision:	1.1179	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 27, 19103 @ 17:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Added largest patch size message.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1134	Mon Jan 27 23:20:53 2003
   Repository revision:	1.1134	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 27, 19103 @ 17:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp3/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Fixed patch grid code to center on cellOrigin for non-periodic dimensions.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1135	Mon Jan 27 23:34:37 2003
   Repository revision:	1.1135	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 28, 19103 @ 20:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added dumpbench tcl command to support NAMD serial benchmark.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.92	Wed Jan 29 02:20:06 2003
   Repository revision:	1.92	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.88)
	release-2-4              	(revision: 1.88)
	release-2-4-beta-2       	(revision: 1.88)
	release-2-4-beta-1       	(revision: 1.86)
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1188	Thu Jan  9 16:56:44 2003
   Repository revision:	1.1188	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 28, 19103 @ 20:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeMap.C ComputeMap.h LJTable.h ScriptTcl.C ScriptTcl.h 
Log Message:
Added dumpbench tcl command to support NAMD serial benchmark.


===================================================================
File: ComputeMap.C     	Status: Up-to-date

   Working revision:	1.1025	Thu Jan  9 19:27:29 2003
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/ComputeMap.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1023)
	release-2-4              	(revision: 1.1023)
	release-2-4-beta-2       	(revision: 1.1023)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1023)
	release-2-3-beta-2       	(revision: 1.1023)
	release-2-3-beta-1       	(revision: 1.1023)
	release-2-2              	(revision: 1.1023)
	release-2-2-beta-3       	(revision: 1.1023)
	release-2-2-beta-2       	(revision: 1.1023)
	release-2-2-beta-1       	(revision: 1.1023)
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1013)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1029	Thu Jan  9 19:26:53 2003
   Repository revision:	1.1029	/Projects/namd2/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1026)
	release-2-4              	(revision: 1.1026)
	release-2-4-beta-2       	(revision: 1.1026)
	release-2-4-beta-1       	(revision: 1.1026)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: LJTable.h        	Status: Up-to-date

   Working revision:	1.1009	Thu Jan  9 17:25:26 2003
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/LJTable.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1008)
	release-2-4              	(revision: 1.1008)
	release-2-4-beta-2       	(revision: 1.1008)
	release-2-4-beta-1       	(revision: 1.1008)
	release-2-3              	(revision: 1.1008)
	release-2-3-beta-2       	(revision: 1.1008)
	release-2-3-beta-1       	(revision: 1.1006)
	release-2-2              	(revision: 1.1006)
	release-2-2-beta-3       	(revision: 1.1006)
	release-2-2-beta-2       	(revision: 1.1006)
	release-2-2-beta-1       	(revision: 1.1006)
	release-2-1              	(revision: 1.1004)
	release-2-1-beta-4       	(revision: 1.1004)
	release-2-1-beta-3       	(revision: 1.1004)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.46	Thu Jan  9 16:53:45 2003
   Repository revision:	1.46	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.22	Thu Jan  9 16:50:11 2003
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.17)
	release-2-4-beta-2       	(revision: 1.17)
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.16)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Tuesday January 28, 19103 @ 20:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added ComputeNonbondedBase.C to hold inner-loop and thus get rid of the
stupid Intel IA-64 compiler getting confused and not pipelining bug.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.93	Wed Jan 29 02:29:16 2003
   Repository revision:	1.93	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.88)
	release-2-4              	(revision: 1.88)
	release-2-4-beta-2       	(revision: 1.88)
	release-2-4-beta-1       	(revision: 1.86)
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1189	Wed Jan 29 02:27:26 2003
   Repository revision:	1.1189	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 28, 19103 @ 20:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedUtil.C 
Added Files:
	ComputeNonbondedBase.C 
Log Message:
Added ComputeNonbondedBase.C to hold inner-loop and thus get rid of the
stupid Intel IA-64 compiler getting confused and not pipelining bug.


===================================================================
File: ComputeNonbondedBase.C	Status: Up-to-date

   Working revision:	1.1	Wed Jan 29 02:01:27 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1068	Wed Jan 29 02:03:08 2003
   Repository revision:	1.1068	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday January 28, 19103 @ 20:53
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Make.depends 
Log Message:
Eliminated bogus tcl and fftw dependencies.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.94	Wed Jan 29 02:53:19 2003
   Repository revision:	1.94	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.88)
	release-2-4              	(revision: 1.88)
	release-2-4-beta-2       	(revision: 1.88)
	release-2-4-beta-1       	(revision: 1.86)
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Tuesday January 28, 19103 @ 20:57
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Added Files:
	DumpBench.C DumpBench.h DumpBenchParams.h 
Log Message:
Adding missing files for serial benchmark generation.


===================================================================
File: DumpBench.C      	Status: Up-to-date

   Working revision:	1.1	Thu Jan  9 22:58:25 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/DumpBench.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: DumpBench.h      	Status: Up-to-date

   Working revision:	1.1	Thu Jan  9 16:46:10 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/DumpBench.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: DumpBenchParams.h	Status: Up-to-date

   Working revision:	1.1	Thu Jan  9 16:43:58 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/DumpBenchParams.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday January 28, 19103 @ 21:12
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv13312

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedBase2.h 
Log Message:
Improved pipelining on Intel IA-64 compiler.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1095	Wed Jan 29 03:12:45 2003
   Repository revision:	1.1095	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase2.h	Status: Up-to-date

   Working revision:	1.4	Wed Jan 29 03:12:45 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase2.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday January 31, 19103 @ 12:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
One more int64.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1096	Fri Jan 31 18:36:52 2003
   Repository revision:	1.1096	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday February 4, 19103 @ 15:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.C ComputeNonbondedBase.h 
	ComputeNonbondedBase2.h ComputeNonbondedPair.C 
	ComputeNonbondedPair.h ComputeNonbondedSelf.C 
	ComputeNonbondedSelf.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h PatchTypes.h Sequencer.C Sequencer.h 
	SimParameters.C SimParameters.h 
Log Message:
Added pairlists, may disable with pairlistMinProcs > numProcs.


===================================================================
File: ComputeNonbondedBase.C	Status: Up-to-date

   Working revision:	1.2	Fri Jan 31 22:43:53 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1097	Tue Feb  4 19:56:02 2003
   Repository revision:	1.1097	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase2.h	Status: Up-to-date

   Working revision:	1.5	Tue Feb  4 16:35:06 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase2.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1030	Fri Jan 31 13:45:42 2003
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1025)
	release-2-4              	(revision: 1.1025)
	release-2-4-beta-2       	(revision: 1.1025)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1024)
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1024)
	release-2-2-beta-3       	(revision: 1.1024)
	release-2-2-beta-2       	(revision: 1.1024)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1015	Fri Jan 31 13:32:42 2003
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1013)
	release-2-4              	(revision: 1.1013)
	release-2-4-beta-2       	(revision: 1.1013)
	release-2-4-beta-1       	(revision: 1.1013)
	release-2-3              	(revision: 1.1013)
	release-2-3-beta-2       	(revision: 1.1013)
	release-2-3-beta-1       	(revision: 1.1013)
	release-2-2              	(revision: 1.1013)
	release-2-2-beta-3       	(revision: 1.1013)
	release-2-2-beta-2       	(revision: 1.1013)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1024	Fri Jan 31 22:27:58 2003
   Repository revision:	1.1024	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1020)
	release-2-4              	(revision: 1.1020)
	release-2-4-beta-2       	(revision: 1.1020)
	release-2-4-beta-1       	(revision: 1.1020)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1019)
	release-2-2-beta-3       	(revision: 1.1019)
	release-2-2-beta-2       	(revision: 1.1019)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.1013	Fri Jan 31 13:32:17 2003
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1011)
	release-2-4              	(revision: 1.1011)
	release-2-4-beta-2       	(revision: 1.1011)
	release-2-4-beta-1       	(revision: 1.1011)
	release-2-3              	(revision: 1.1011)
	release-2-3-beta-2       	(revision: 1.1011)
	release-2-3-beta-1       	(revision: 1.1011)
	release-2-2              	(revision: 1.1011)
	release-2-2-beta-3       	(revision: 1.1011)
	release-2-2-beta-2       	(revision: 1.1011)
	release-2-2-beta-1       	(revision: 1.1011)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1069	Thu Jan 30 20:38:00 2003
   Repository revision:	1.1069	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1045	Mon Feb  3 22:01:12 2003
   Repository revision:	1.1045	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.16	Fri Jan 31 13:55:46 2003
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.14)
	release-2-4              	(revision: 1.14)
	release-2-4-beta-2       	(revision: 1.14)
	release-2-4-beta-1       	(revision: 1.14)
	release-2-3              	(revision: 1.14)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.14)
	release-2-2-beta-3       	(revision: 1.14)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.13)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.8)
	development-4            	(revision: 1.8)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1130	Tue Feb  4 21:04:54 2003
   Repository revision:	1.1130	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1040	Tue Feb  4 20:16:55 2003
   Repository revision:	1.1040	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1035)
	release-2-3              	(revision: 1.1035)
	release-2-3-beta-2       	(revision: 1.1035)
	release-2-3-beta-1       	(revision: 1.1035)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1180	Tue Feb  4 21:36:04 2003
   Repository revision:	1.1180	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1095	Tue Feb  4 20:58:18 2003
   Repository revision:	1.1095	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday February 6, 19103 @ 16:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	ComputeNonbondedBase.C ComputeNonbondedBase.h 
	ComputeNonbondedBase2.h 
Log Message:
Replaced cast-based float-int32 aliasing trick with explicit union.


===================================================================
File: ComputeNonbondedBase.C	Status: Up-to-date

   Working revision:	1.3	Thu Feb  6 19:20:48 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1098	Thu Feb  6 22:26:30 2003
   Repository revision:	1.1098	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase2.h	Status: Up-to-date

   Working revision:	1.6	Thu Feb  6 22:28:32 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase2.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday February 6, 19103 @ 16:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv6392

Modified Files:
	ComputeNonbondedBase.C ComputeNonbondedBase.h 
	ComputeNonbondedBase2.h 
Log Message:
Eliminated annoying r2f array since IA64 pipelines using a proper union.


===================================================================
File: ComputeNonbondedBase.C	Status: Up-to-date

   Working revision:	1.4	Thu Feb  6 22:47:57 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1099	Thu Feb  6 22:47:57 2003
   Repository revision:	1.1099	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase2.h	Status: Up-to-date

   Working revision:	1.7	Thu Feb  6 22:47:57 2003
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase2.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday February 6, 19103 @ 17:29
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Linux-i686-icc.arch 
Log Message:
New options for icpc/icc 7.0.  Runs on anything, better than arch=p4.


===================================================================
File: Linux-i686-icc.arch	Status: Up-to-date

   Working revision:	1.2	Thu Feb  6 22:54:07 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-icc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Thursday February 6, 19103 @ 17:38
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Added Files:
	Linux-i686-g++3-athlon.arch 
Log Message:
g++ 3.2 options for Athlon.


===================================================================
File: Linux-i686-g++3-athlon.arch	Status: Up-to-date

   Working revision:	1.1	Wed Feb  5 21:41:58 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-g++3-athlon.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday February 6, 19103 @ 18:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	common.h 
Log Message:
Defined int64 as __int64 for MSVC.


===================================================================
File: common.h         	Status: Up-to-date

   Working revision:	1.1039	Fri Feb  7 00:56:43 2003
   Repository revision:	1.1039	/Projects/namd2/cvsroot/namd2/src/common.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1036)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1036)
	release-2-3              	(revision: 1.1035)
	release-2-3-beta-2       	(revision: 1.1035)
	release-2-3-beta-1       	(revision: 1.1035)
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1024)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1018)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday February 10, 19103 @ 16:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Random.h 
Log Message:
Rewritten for performance using 64-bit integers and no ldexp().


===================================================================
File: Random.h         	Status: Up-to-date

   Working revision:	1.7	Mon Feb 10 22:30:37 2003
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/Random.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.6)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Monday February 10, 19103 @ 17:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Modified Files:
	Linux-i686-icc.arch 
Log Message:
Eliminated -align -Zp8 options, which cause segfaults in load balancing.


===================================================================
File: Linux-i686-icc.arch	Status: Up-to-date

   Working revision:	1.3	Mon Feb 10 23:01:58 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-icc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Friday February 14, 19103 @ 10:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Communicate.C Compute.C Compute.h ComputeHomeTuples.h 
	ComputeMgr.C ComputeNonbondedUtil.C ComputePme.C 
	ComputeSelfTuples.h Node.C PatchMgr.h 
Log Message:
Support for SMP versions of charm.


===================================================================
File: Communicate.C    	Status: Up-to-date

   Working revision:	1.1010	Wed Feb 12 22:35:55 2003
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/Communicate.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1009)
	release-2-4              	(revision: 1.1009)
	release-2-4-beta-2       	(revision: 1.1009)
	release-2-4-beta-1       	(revision: 1.1009)
	release-2-3              	(revision: 1.1009)
	release-2-3-beta-2       	(revision: 1.1009)
	release-2-3-beta-1       	(revision: 1.1009)
	release-2-2              	(revision: 1.1007)
	release-2-2-beta-3       	(revision: 1.1007)
	release-2-2-beta-2       	(revision: 1.1007)
	release-2-2-beta-1       	(revision: 1.1007)
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.C        	Status: Up-to-date

   Working revision:	1.1028	Wed Feb 12 19:56:33 2003
   Repository revision:	1.1028	/Projects/namd2/cvsroot/namd2/src/Compute.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1027)
	release-2-4              	(revision: 1.1027)
	release-2-4-beta-2       	(revision: 1.1027)
	release-2-4-beta-1       	(revision: 1.1027)
	release-2-3              	(revision: 1.1027)
	release-2-3-beta-2       	(revision: 1.1027)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1027)
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1018)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Compute.h        	Status: Up-to-date

   Working revision:	1.1016	Wed Feb 12 19:55:55 2003
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/Compute.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1015)
	release-2-4              	(revision: 1.1015)
	release-2-4-beta-2       	(revision: 1.1015)
	release-2-4-beta-1       	(revision: 1.1015)
	release-2-3              	(revision: 1.1015)
	release-2-3-beta-2       	(revision: 1.1015)
	release-2-3-beta-1       	(revision: 1.1015)
	release-2-2              	(revision: 1.1015)
	release-2-2-beta-3       	(revision: 1.1015)
	release-2-2-beta-2       	(revision: 1.1015)
	release-2-2-beta-1       	(revision: 1.1015)
	release-2-1              	(revision: 1.1013)
	release-2-1-beta-4       	(revision: 1.1013)
	release-2-1-beta-3       	(revision: 1.1013)
	release-2-1-beta-2       	(revision: 1.1013)
	release-2-1-beta-1       	(revision: 1.1011)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1037	Wed Feb 12 19:58:45 2003
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1033)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1033)
	release-2-3-beta-2       	(revision: 1.1033)
	release-2-3-beta-1       	(revision: 1.1033)
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1054	Wed Feb 12 19:45:01 2003
   Repository revision:	1.1054	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1049)
	release-2-4              	(revision: 1.1049)
	release-2-4-beta-2       	(revision: 1.1049)
	release-2-4-beta-1       	(revision: 1.1048)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1070	Wed Feb 12 20:17:41 2003
   Repository revision:	1.1070	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.68	Fri Feb 14 15:40:13 2003
   Repository revision:	1.68	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputeSelfTuples.h	Status: Up-to-date

   Working revision:	1.8	Wed Feb 12 19:59:31 2003
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ComputeSelfTuples.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.4)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1070	Wed Feb 12 22:03:49 2003
   Repository revision:	1.1070	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1066)
	release-2-4-beta-2       	(revision: 1.1066)
	release-2-4-beta-1       	(revision: 1.1066)
	release-2-3              	(revision: 1.1063)
	release-2-3-beta-2       	(revision: 1.1063)
	release-2-3-beta-1       	(revision: 1.1062)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1057)
	release-2-2-beta-1       	(revision: 1.1057)
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMgr.h       	Status: Up-to-date

   Working revision:	1.1020	Wed Feb 12 20:24:25 2003
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/PatchMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1016)
	release-2-4              	(revision: 1.1016)
	release-2-4-beta-2       	(revision: 1.1016)
	release-2-4-beta-1       	(revision: 1.1016)
	release-2-3              	(revision: 1.1016)
	release-2-3-beta-2       	(revision: 1.1016)
	release-2-3-beta-1       	(revision: 1.1016)
	release-2-2              	(revision: 1.1016)
	release-2-2-beta-3       	(revision: 1.1016)
	release-2-2-beta-2       	(revision: 1.1016)
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday February 22, 19103 @ 16:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	GlobalMasterTcl.C 
Log Message:
Fixed bug in clearconfig.  Thanks, Paul!


===================================================================
File: GlobalMasterTcl.C	Status: Up-to-date

   Working revision:	1.9	Sat Feb 22 21:51:34 2003
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)


****************************************
Date:	Friday March 7, 19103 @ 17:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	Origin2000-CC.arch 
Log Message:
Added but commented out "-LANG:libc_in_namespace_std=off" for MipsPro 7.4.


===================================================================
File: Origin2000-CC.arch	Status: Up-to-date

   Working revision:	1.3	Fri Mar  7 23:04:44 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Origin2000-CC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Monday March 10, 19103 @ 23:45
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
The kinetic contribution to the pressure profile is now calculated from the
halfstep velocities, for consistency with the regular pressure and kinetic
energy calculations.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1131	Tue Mar 11 05:03:30 2003
   Repository revision:	1.1131	/home/cvs/namd/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 11, 19103 @ 14:46
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Submit pressure profile at the end of the timestep, not from within
submitHalfstep.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1132	Tue Mar 11 17:45:14 2003
   Repository revision:	1.1132	/home/cvs/namd/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday March 11, 19103 @ 16:15
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	HomePatch.C HomePatch.h Sequencer.C 
Log Message:
Pressure profile calculations should work with group pressure and rigid
hydrogens now.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1104	Tue Mar 11 21:27:06 2003
   Repository revision:	1.1104	/home/cvs/namd/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1040	Tue Mar 11 21:27:06 2003
   Repository revision:	1.1040	/home/cvs/namd/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1034)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1032)
	release-2-3-beta-1       	(revision: 1.1032)
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1133	Tue Mar 11 22:09:09 2003
   Repository revision:	1.1133	/home/cvs/namd/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday March 13, 19103 @ 15:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Invalidate pairlists on revert.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1134	Thu Mar 13 21:04:23 2003
   Repository revision:	1.1134	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 16, 19103 @ 22:22
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/tmp/cvs-serv15767

Modified Files:
	FreeEnergyEnums.h FreeEnergyLambda.h FreeEnergyParse.C 
	FreeEnergyParse.h 
Log Message:
Renamed task_t to feptask_t to avoid name conflicts with Darwmin charm++
headers.


===================================================================
File: FreeEnergyEnums.h	Status: Up-to-date

   Working revision:	1.3	Mon Mar 17 04:22:30 2003
   Repository revision:	1.3	/home/cvs/namd/cvsroot/namd2/src/FreeEnergyEnums.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.2)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: FreeEnergyLambda.h	Status: Up-to-date

   Working revision:	1.7	Mon Mar 17 04:22:30 2003
   Repository revision:	1.7	/home/cvs/namd/cvsroot/namd2/src/FreeEnergyLambda.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.6)
	release-2-4-beta-2       	(revision: 1.6)
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: FreeEnergyParse.C	Status: Up-to-date

   Working revision:	1.12	Mon Mar 17 04:22:33 2003
   Repository revision:	1.12	/home/cvs/namd/cvsroot/namd2/src/FreeEnergyParse.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.10)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.9)
	release-2-3-beta-2       	(revision: 1.9)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyParse.h	Status: Up-to-date

   Working revision:	1.5	Mon Mar 17 04:22:33 2003
   Repository revision:	1.5	/home/cvs/namd/cvsroot/namd2/src/FreeEnergyParse.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Thursday March 20, 19103 @ 16:40
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
Fixed typo in rattle1 pressure profile calculations.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1105	Thu Mar 20 22:37:54 2003
   Repository revision:	1.1105	/home/cvs/namd/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday March 21, 19103 @ 16:28
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	HomePatch.C Sequencer.C 
Log Message:
Don't apply reverse_transform to pressure profile coordinates.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1106	Fri Mar 21 22:23:23 2003
   Repository revision:	1.1106	/home/cvs/namd/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1135	Fri Mar 21 22:24:30 2003
   Repository revision:	1.1135	/home/cvs/namd/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday March 23, 19103 @ 20:46
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
Assign atoms to pressure profile slabs in rattle1 based on the position of
the parent atom, so that all contributions to the virial coming from a
particular hydrogen group go into the same slab.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1107	Mon Mar 24 02:26:58 2003
   Repository revision:	1.1107	/home/cvs/namd/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday March 24, 19103 @ 15:08
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
Fixed brain-dead typo in pressure profile code from last commit.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1108	Mon Mar 24 20:32:48 2003
   Repository revision:	1.1108	/home/cvs/namd/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 2, 19103 @ 10:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	Origin2000-CC.arch 
Log Message:
Added magic -LANG:std option.


===================================================================
File: Origin2000-CC.arch	Status: Up-to-date

   Working revision:	1.4	Wed Apr  2 16:32:12 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Origin2000-CC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Wednesday April 2, 19103 @ 12:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	T3E-CC.arch 
Log Message:
Add option to allow new for loop scoping.


===================================================================
File: T3E-CC.arch      	Status: Up-to-date

   Working revision:	1.3	Wed Apr  2 18:49:40 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/T3E-CC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Wednesday April 2, 19103 @ 14:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv11662

Modified Files:
	UniqueSortedArray.h 
Log Message:
Clarified bsearch() to this->bsearch().


===================================================================
File: UniqueSortedArray.h	Status: Up-to-date

   Working revision:	1.5	Wed Apr  2 20:05:46 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/UniqueSortedArray.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Wednesday April 2, 19103 @ 14:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	Linux-Alpha-cxx.arch Tru64-Alpha-CC.arch 
	Tru64-Alpha-ELAN-CC.arch Tru64-Alpha-MPI-CC.arch 
Log Message:
Changing "-host arch -tune arch" to "-fast" so new charm is happy.


===================================================================
File: Linux-Alpha-cxx.arch	Status: Up-to-date

   Working revision:	1.5	Wed Apr  2 20:16:42 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha-cxx.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.1)

===================================================================
File: Tru64-Alpha-CC.arch	Status: Up-to-date

   Working revision:	1.4	Wed Apr  2 20:17:01 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-CC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Tru64-Alpha-ELAN-CC.arch	Status: Up-to-date

   Working revision:	1.2	Wed Apr  2 20:17:14 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-ELAN-CC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Tru64-Alpha-MPI-CC.arch	Status: Up-to-date

   Working revision:	1.4	Wed Apr  2 20:17:29 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-MPI-CC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Wednesday April 2, 19103 @ 14:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	Linux-i686-pgCC.arch 
Log Message:
Change "-tp p6" to "-tpp6" to make new charm happy.


===================================================================
File: Linux-i686-pgCC.arch	Status: Up-to-date

   Working revision:	1.3	Wed Apr  2 20:22:41 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-pgCC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Friday April 4, 19103 @ 9:54
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv20344

Added Files:
	ComputeNonbondedFEP.C ComputeNonbondedInl.h 
	ComputeNonbondedLES.C ComputeNonbondedStd.C 
Removed Files:
	ComputeNonbondedBase.C 
Log Message:
Split ComputeNonbondedBase.C into smaller files to build on T3E.


===================================================================
File: ComputeNonbondedFEP.C	Status: Up-to-date

   Working revision:	1.1	Fri Apr  4 15:54:22 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedFEP.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedInl.h	Status: Up-to-date

   Working revision:	1.1	Fri Apr  4 15:54:22 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedInl.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedLES.C	Status: Up-to-date

   Working revision:	1.1	Fri Apr  4 15:54:22 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedLES.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedStd.C	Status: Up-to-date

   Working revision:	1.1	Fri Apr  4 15:54:22 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedStd.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file ComputeNonbondedBase.C		Status: Up-to-date

   Working revision:	No entry for ComputeNonbondedBase.C
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/Attic/ComputeNonbondedBase.C,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday April 4, 19103 @ 9:54
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv20368

Modified Files:
	Makefile 
Log Message:
Split ComputeNonbondedBase.C into smaller files to build on T3E.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1190	Fri Apr  4 15:54:58 2003
   Repository revision:	1.1190	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday April 4, 19103 @ 10:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Make.depends 
Log Message:
Split ComputeNonbondedBase.C into smaller files to build on T3E.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.95	Fri Apr  4 16:25:56 2003
   Repository revision:	1.95	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.88)
	release-2-4              	(revision: 1.88)
	release-2-4-beta-2       	(revision: 1.88)
	release-2-4-beta-1       	(revision: 1.86)
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Friday April 4, 19103 @ 13:53
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	Win32.plugins 
Log Message:
molfileplugin.lib -> libmolfileplugin.lib


===================================================================
File: Win32.plugins    	Status: Up-to-date

   Working revision:	1.3	Fri Apr  4 19:52:56 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Win32.plugins,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Sunday April 6, 19103 @ 16:45
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Use parent atom to compute pressure profile slab when using group presssure;
already done in rattle, now every where else as well (except nonbonded).


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1136	Sun Apr  6 21:28:06 2003
   Repository revision:	1.1136	/home/cvs/namd/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 7, 19103 @ 1:20
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Added "measure { consForceConfig <atomlist> <forcelist> }" command for 
modifying constant forces on the fly.  Still undocumented (along with
all the other measure commands for that matter).  Also made errors in
the measure commands fatal; previously, any errors or error messages
were ignored.  The consForcefile parameter is now optional, since constant
forces can be specified at any time through the measure interface, though a
warning is issued if the filename is omitted.  Updated the docs a little
bit for the measure commands; still have lots to do here.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.96	Mon Apr  7 04:00:00 2003
   Repository revision:	1.96	/home/cvs/namd/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.88)
	release-2-4              	(revision: 1.88)
	release-2-4-beta-2       	(revision: 1.88)
	release-2-4-beta-1       	(revision: 1.86)
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1191	Mon Apr  7 04:34:58 2003
   Repository revision:	1.1191	/home/cvs/namd/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 7, 19103 @ 1:20
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeMgr.C ComputeMgr.ci ComputeMgr.h Measure.C Molecule.C 
	NamdState.C ScriptTcl.C ScriptTcl.h SimParameters.C 
Added Files:
	ComputeConsForceMsgs.C ComputeConsForceMsgs.h 
Log Message:
Added "measure { consForceConfig <atomlist> <forcelist> }" command for 
modifying constant forces on the fly.  Still undocumented (along with
all the other measure commands for that matter).  Also made errors in
the measure commands fatal; previously, any errors or error messages
were ignored.  The consForcefile parameter is now optional, since constant
forces can be specified at any time through the measure interface, though a
warning is issued if the filename is omitted.  Updated the docs a little
bit for the measure commands; still have lots to do here.


===================================================================
File: ComputeConsForceMsgs.C	Status: Up-to-date

   Working revision:	1.1	Mon Apr  7 04:03:06 2003
   Repository revision:	1.1	/home/cvs/namd/cvsroot/namd2/src/ComputeConsForceMsgs.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeConsForceMsgs.h	Status: Up-to-date

   Working revision:	1.1	Mon Apr  7 03:29:31 2003
   Repository revision:	1.1	/home/cvs/namd/cvsroot/namd2/src/ComputeConsForceMsgs.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1055	Mon Apr  7 06:05:40 2003
   Repository revision:	1.1055	/home/cvs/namd/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1049)
	release-2-4              	(revision: 1.1049)
	release-2-4-beta-2       	(revision: 1.1049)
	release-2-4-beta-1       	(revision: 1.1048)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.ci    	Status: Up-to-date

   Working revision:	1.1012	Mon Apr  7 03:23:43 2003
   Repository revision:	1.1012	/home/cvs/namd/cvsroot/namd2/src/ComputeMgr.ci,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1011)
	release-2-4              	(revision: 1.1011)
	release-2-4-beta-2       	(revision: 1.1011)
	release-2-4-beta-1       	(revision: 1.1011)
	release-2-3              	(revision: 1.1011)
	release-2-3-beta-2       	(revision: 1.1011)
	release-2-3-beta-1       	(revision: 1.1011)
	release-2-2              	(revision: 1.1010)
	release-2-2-beta-3       	(revision: 1.1010)
	release-2-2-beta-2       	(revision: 1.1010)
	release-2-2-beta-1       	(revision: 1.1010)
	release-2-1              	(revision: 1.1009)
	release-2-1-beta-4       	(revision: 1.1009)
	release-2-1-beta-3       	(revision: 1.1009)
	release-2-1-beta-2       	(revision: 1.1009)
	release-2-1-beta-1       	(revision: 1.1007)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1024	Mon Apr  7 04:31:30 2003
   Repository revision:	1.1024	/home/cvs/namd/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1023)
	release-2-4              	(revision: 1.1023)
	release-2-4-beta-2       	(revision: 1.1023)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1021)
	release-2-3-beta-2       	(revision: 1.1021)
	release-2-3-beta-1       	(revision: 1.1021)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1013)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Measure.C        	Status: Up-to-date

   Working revision:	1.6	Mon Apr  7 06:11:32 2003
   Repository revision:	1.6	/home/cvs/namd/cvsroot/namd2/src/Measure.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1080	Mon Apr  7 05:27:37 2003
   Repository revision:	1.1080	/home/cvs/namd/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1043	Mon Apr  7 05:24:39 2003
   Repository revision:	1.1043	/home/cvs/namd/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1031)
	release-2-3-beta-1       	(revision: 1.1029)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1029)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.47	Mon Apr  7 05:53:08 2003
   Repository revision:	1.47	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.23	Mon Apr  7 05:53:31 2003
   Repository revision:	1.23	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.17)
	release-2-4-beta-2       	(revision: 1.17)
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.16)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1181	Mon Apr  7 06:04:44 2003
   Repository revision:	1.1181	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 7, 19103 @ 1:20
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_start.tex 
Log Message:
Added "measure { consForceConfig <atomlist> <forcelist> }" command for 
modifying constant forces on the fly.  Still undocumented (along with
all the other measure commands for that matter).  Also made errors in
the measure commands fatal; previously, any errors or error messages
were ignored.  The consForcefile parameter is now optional, since constant
forces can be specified at any time through the measure interface, though a
warning is issued if the filename is omitted.  Updated the docs a little
bit for the measure commands; still have lots to do here.


===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.13	Mon Apr  7 06:17:05 2003
   Repository revision:	1.13	/home/cvs/namd/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.10)
	release-2-3-beta-2       	(revision: 1.10)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Monday April 7, 19103 @ 1:23
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Noted that consForceFile is optional now.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.51	Mon Apr  7 06:22:44 2003
   Repository revision:	1.51	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Monday April 7, 19103 @ 10:59
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeMgr.C 
Log Message:
Receivers gotta delete their messages.


===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1056	Mon Apr  7 15:56:56 2003
   Repository revision:	1.1056	/home/cvs/namd/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1049)
	release-2-4              	(revision: 1.1049)
	release-2-4-beta-2       	(revision: 1.1049)
	release-2-4-beta-1       	(revision: 1.1048)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 7, 19103 @ 11:11
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Measure.C ScriptTcl.C 
Log Message:
Moved the consForceConfig command from Measure to ScriptTcl since it
doesn't require atom coordinates.


===================================================================
File: Measure.C        	Status: Up-to-date

   Working revision:	1.7	Mon Apr  7 16:01:58 2003
   Repository revision:	1.7	/home/cvs/namd/cvsroot/namd2/src/Measure.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.48	Mon Apr  7 16:01:53 2003
   Repository revision:	1.48	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Monday April 7, 19103 @ 11:11
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Moved the consForceConfig command from Measure to ScriptTcl since it
doesn't require atom coordinates.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.52	Mon Apr  7 16:10:29 2003
   Repository revision:	1.52	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Monday April 7, 19103 @ 16:21
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory titan:/tmp/namd2/src

Modified Files:
	ComputeNonbondedUtil.C 
Log Message:
Fixed a UMR found by purify, which was leading to a cascade of other UMR's.   
Gotta remember that the ConfigOpts class doesn't initialize variables 
corresponding to blocks options that aren't enabled.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1071	Mon Apr  7 21:16:36 2003
   Repository revision:	1.1071	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 7, 19103 @ 16:43
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Fixed a UMR found by purify in the handling of fixed groups; seems to have
been innocuous.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1100	Mon Apr  7 21:35:45 2003
   Repository revision:	1.1100	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 7, 19103 @ 17:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedBase.h 
Log Message:
Alternate fix for UMR error.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1101	Mon Apr  7 21:59:49 2003
   Repository revision:	1.1101	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 9, 19103 @ 17:51
Author:	barryi

Update of /Projects/namd2/cvsroot/namd2
In directory napoli.ks.uiuc.edu:/Projects/barryi/namd2/namd2

Modified Files:
	Make.charm Make.depends Makefile 
Log Message:
Barry's torque application method.  "Stirring" atoms, constraining
only theta around a defined axis.
When used, writes to big auxlliary data file each time step step.
Still a little chatty; aux data file should be made more compact.


===================================================================
File: Make.charm       	Status: Up-to-date

   Working revision:	1.11	Tue Apr  8 23:09:15 2003
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/Make.charm,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.10)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.10)
	release-2-3-beta-2       	(revision: 1.10)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.97	Mon Apr  7 23:18:53 2003
   Repository revision:	1.97	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.88)
	release-2-4              	(revision: 1.88)
	release-2-4-beta-2       	(revision: 1.88)
	release-2-4-beta-1       	(revision: 1.86)
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1192	Mon Apr  7 23:18:23 2003
   Repository revision:	1.1192	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 9, 19103 @ 17:53
Author:	barryi

Update of /Projects/namd2/cvsroot/namd2/src
In directory napoli.ks.uiuc.edu:/Projects/barryi/namd2/namd2/src

Modified Files:
	ComputeMap.h ComputeMgr.C Molecule.C Molecule.h NamdState.C 
	SimParameters.C SimParameters.h WorkDistrib.C 
Added Files:
	ComputeStir.C ComputeStir.h 
Log Message:
Barry's torque application method.  "Stirring" atoms, constraining
only theta around a defined axis.
When used, writes to big auxlliary data file each time step step.
Still a little chatty; aux data file should be made more compact.


===================================================================
File: ComputeStir.C    	Status: Up-to-date

   Working revision:	1.1	Fri Mar 14 23:47:09 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeStir.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeStir.h    	Status: Up-to-date

   Working revision:	1.1	Wed Oct  2 18:42:55 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ComputeStir.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeMap.h     	Status: Up-to-date

   Working revision:	1.1030	Fri Jan 31 16:45:02 2003
   Repository revision:	1.1030	/Projects/namd2/cvsroot/namd2/src/ComputeMap.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1026)
	release-2-4              	(revision: 1.1026)
	release-2-4-beta-2       	(revision: 1.1026)
	release-2-4-beta-1       	(revision: 1.1026)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1022)
	release-2-2              	(revision: 1.1022)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1057	Mon Apr  7 23:31:15 2003
   Repository revision:	1.1057	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1049)
	release-2-4              	(revision: 1.1049)
	release-2-4-beta-2       	(revision: 1.1049)
	release-2-4-beta-1       	(revision: 1.1048)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1081	Mon Apr  7 23:31:17 2003
   Repository revision:	1.1081	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1048	Wed Mar 12 21:31:42 2003
   Repository revision:	1.1048	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1040)
	release-2-4-beta-2       	(revision: 1.1040)
	release-2-4-beta-1       	(revision: 1.1038)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1034)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: NamdState.C      	Status: Up-to-date

   Working revision:	1.1044	Mon Apr  7 23:08:16 2003
   Repository revision:	1.1044	/Projects/namd2/cvsroot/namd2/src/NamdState.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1031)
	release-2-3-beta-1       	(revision: 1.1029)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1029)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1019)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1182	Mon Apr  7 23:08:05 2003
   Repository revision:	1.1182	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1096	Mon Feb 17 20:51:28 2003
   Repository revision:	1.1096	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1136	Fri Jan 31 16:45:16 2003
   Repository revision:	1.1136	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 9, 19103 @ 18:06
Author:	barryi

Update of /Projects/namd2/cvsroot/namd2
In directory napoli.ks.uiuc.edu:/Projects/barryi/namd2/namd2

Modified Files:
	Make.charm 
Log Message:
Changed CHARMBASE back to /Projects/namd2/charm (I had accidentally left
it pointing to me personal charm build). 


===================================================================
File: Make.charm       	Status: Up-to-date

   Working revision:	1.12	Wed Apr  9 23:04:24 2003
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/Make.charm,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.10)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.10)
	release-2-3-beta-2       	(revision: 1.10)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Thursday April 10, 19103 @ 11:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory cancun:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Communicate.C 
Log Message:
Switch back to broadcast from inefficient multicast.  Messages to
non-rank-zero pes are just thrown away.


===================================================================
File: Communicate.C    	Status: Up-to-date

   Working revision:	1.1011	Thu Apr 10 16:07:20 2003
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/Communicate.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1009)
	release-2-4              	(revision: 1.1009)
	release-2-4-beta-2       	(revision: 1.1009)
	release-2-4-beta-1       	(revision: 1.1009)
	release-2-3              	(revision: 1.1009)
	release-2-3-beta-2       	(revision: 1.1009)
	release-2-3-beta-1       	(revision: 1.1009)
	release-2-2              	(revision: 1.1007)
	release-2-2-beta-3       	(revision: 1.1007)
	release-2-2-beta-2       	(revision: 1.1007)
	release-2-2-beta-1       	(revision: 1.1007)
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1005)
	release-2-0-pre-charm-syntax	(revision: 1.1005)
	release-2-0              	(revision: 1.1005)
	release-2-0-beta-3       	(revision: 1.1005)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday April 16, 19103 @ 16:17
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	SimParameters.C SimParameters.h 
Log Message:
Added consForceFile optional parameter to avoid spurious warning.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1183	Wed Apr 16 21:11:57 2003
   Repository revision:	1.1183	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1097	Wed Apr 16 20:59:26 2003
   Repository revision:	1.1097	/home/cvs/namd/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday April 17, 19103 @ 15:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory cupertino.ks.uiuc.edu:/tmp/namd2/Darwin-PPC-c++/.rootdir/Darwin-PPC-c++.debug/.rootdir/Darwin-PPC-c++/.rootdir/arch

Modified Files:
	Darwin-PPC-c++.arch 
Log Message:
Reduced optimization level to -O because of bad results at higher levels.


===================================================================
File: Darwin-PPC-c++.arch	Status: Up-to-date

   Working revision:	1.4	Thu Apr 17 20:21:28 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Darwin-PPC-c++.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)


****************************************
Date:	Monday May 5, 19103 @ 16:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory portia.ks.uiuc.edu:/tmp/namd2/arch

Modified Files:
	Linux-i686-g++.arch Linux-i686-g++3-athlon.arch 
	Linux-i686-icc.arch 
Log Message:
Moved -static to OPTS lines.


===================================================================
File: Linux-i686-g++.arch	Status: Up-to-date

   Working revision:	1.5	Mon May  5 21:29:40 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-g++.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Linux-i686-g++3-athlon.arch	Status: Up-to-date

   Working revision:	1.2	Mon May  5 21:30:05 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-g++3-athlon.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-icc.arch	Status: Up-to-date

   Working revision:	1.4	Mon May  5 21:31:53 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-icc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Tuesday May 6, 19103 @ 13:31
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Fixed bug; pairlists are not generated when nonbonded is not calculated.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1137	Tue May  6 18:28:56 2003
   Repository revision:	1.1137	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 8, 19103 @ 2:41
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv25475

Modified Files:
	NamdCentLB.C 
Log Message:
updated to charm ver. 5.6.8


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.45	Thu May  8 07:41:54 2003
   Repository revision:	1.45	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Sunday May 11, 19103 @ 17:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Controller.C Controller.h ReductionMgr.h Sequencer.C 
Log Message:
Changed kinetic energy estimator used for total energy calculation from
pure half-step (average of half-step velocities before and after step) to
2/3 centered velocities and 1/3 half-step velocities.  This quantity is
well-conserved during thermal equilibration in NVE ensemble.
Half-step velocities are still used for pressure and temperature estimates,
since these values require balance between potential and kinetic energy
rather than conservation of their sum.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1174	Sun May 11 20:41:03 2003
   Repository revision:	1.1174	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1049	Sun May 11 20:20:06 2003
   Repository revision:	1.1049	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1033	Sun May 11 20:20:24 2003
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1027)
	release-2-4              	(revision: 1.1026)
	release-2-4-beta-2       	(revision: 1.1026)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1025)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1138	Sun May 11 20:21:28 2003
   Repository revision:	1.1138	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday May 11, 19103 @ 17:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Controller.C 
Log Message:
Only adjust TOTAL3 offset based on most accurate, slowest timestep energies.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1175	Sun May 11 22:06:59 2003
   Repository revision:	1.1175	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday May 13, 19103 @ 13:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2/arch

Added Files:
	Linux-i686-ClusterMatic.arch 
Log Message:
New arch for clustermatic to avoid confusion with scyld.


===================================================================
File: Linux-i686-ClusterMatic.arch	Status: Up-to-date

   Working revision:	1.1	Tue May 13 18:46:52 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-ClusterMatic.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday May 13, 19103 @ 16:18
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv9593

Modified Files:
	NamdCentLB.C 
Log Message:
fixed CHARM_VERSION checking. It seemed only works for charm version which is greater than 050607.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.46	Tue May 13 21:18:55 2003
   Repository revision:	1.46	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)


****************************************
Date:	Wednesday May 14, 19103 @ 17:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Patch.h PatchMap.C WorkDistrib.C 
Log Message:
Eliminated requirement that periodic cell is two patches across.


===================================================================
File: Patch.h          	Status: Up-to-date

   Working revision:	1.1021	Wed May 14 21:51:52 2003
   Repository revision:	1.1021	/Projects/namd2/cvsroot/namd2/src/Patch.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1019)
	release-2-4              	(revision: 1.1019)
	release-2-4-beta-2       	(revision: 1.1019)
	release-2-4-beta-1       	(revision: 1.1019)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1019)
	release-2-2-beta-3       	(revision: 1.1019)
	release-2-2-beta-2       	(revision: 1.1019)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1015)
	release-2-1-beta-3       	(revision: 1.1015)
	release-2-1-beta-2       	(revision: 1.1015)
	release-2-1-beta-1       	(revision: 1.1013)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1012)
	release-alpha-1          	(revision: 1.1009)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1033	Wed May 14 22:46:45 2003
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1030)
	release-2-3              	(revision: 1.1030)
	release-2-3-beta-2       	(revision: 1.1030)
	release-2-3-beta-1       	(revision: 1.1030)
	release-2-2              	(revision: 1.1028)
	release-2-2-beta-3       	(revision: 1.1028)
	release-2-2-beta-2       	(revision: 1.1028)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1137	Wed May 14 22:40:32 2003
   Repository revision:	1.1137	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 15, 19103 @ 16:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	WorkDistrib.C 
Log Message:
Fixed assumption in setting initial atom coordinates in patch to deal with
periodic cells that are only one patch across.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1138	Thu May 15 21:05:56 2003
   Repository revision:	1.1138	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday May 15, 19103 @ 16:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	config 
Log Message:
Recognize -ClusterMatic extension as different architecture.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.30	Thu May 15 21:26:30 2003
   Repository revision:	1.30	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.28)
	release-2-4              	(revision: 1.28)
	release-2-4-beta-2       	(revision: 1.28)
	release-2-4-beta-1       	(revision: 1.27)
	release-2-3              	(revision: 1.26)
	release-2-3-beta-2       	(revision: 1.26)
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Thursday May 15, 19103 @ 16:45
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv23067

Modified Files:
	BackEnd.C 
Log Message:
fixed  program with SMP in latest Charm.


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.20	Thu May 15 21:45:03 2003
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.18)
	release-2-4              	(revision: 1.18)
	release-2-4-beta-2       	(revision: 1.18)
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.14)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)


****************************************
Date:	Friday May 16, 19103 @ 10:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeConsForce.C ComputeConsForce.h ComputeEField.C 
	ComputeEField.h ComputeStir.C ComputeStir.h 
Log Message:
Fixed remaining external forces to incorporate pressure.


===================================================================
File: ComputeConsForce.C	Status: Up-to-date

   Working revision:	1.3	Fri May 16 01:33:07 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeConsForce.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)

===================================================================
File: ComputeConsForce.h	Status: Up-to-date

   Working revision:	1.3	Fri May 16 01:32:15 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/ComputeConsForce.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)

===================================================================
File: ComputeEField.C  	Status: Up-to-date

   Working revision:	1.2	Fri May 16 01:28:47 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeEField.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: ComputeEField.h  	Status: Up-to-date

   Working revision:	1.2	Fri May 16 01:18:25 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeEField.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: ComputeStir.C    	Status: Up-to-date

   Working revision:	1.2	Fri May 16 01:44:30 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeStir.C,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeStir.h    	Status: Up-to-date

   Working revision:	1.2	Fri May 16 01:40:50 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeStir.h,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 16, 19103 @ 14:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
One more fix for single-patch periodic systems.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1109	Fri May 16 19:06:28 2003
   Repository revision:	1.1109	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday May 20, 19103 @ 1:20
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv2684

Modified Files:
	Linux-i686-icc.arch 
Added Files:
	Linux-i686-VMI-icc.arch 
Log Message:
for compilig namd on platinum with icc compiler and VMI.


===================================================================
File: Linux-i686-VMI-icc.arch	Status: Up-to-date

   Working revision:	1.1	Tue May 20 06:20:56 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-VMI-icc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-icc.arch	Status: Up-to-date

   Working revision:	1.5	Tue May 20 06:20:56 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-icc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Tuesday May 20, 19103 @ 11:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory umbriel:/var/tmp/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Updated Commlib syntax.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.69	Tue May 20 16:03:32 2003
   Repository revision:	1.69	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Tuesday May 20, 19103 @ 13:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	common.C 
Log Message:
Changed NAMD_write64 to NAMD_write in bug message.


===================================================================
File: common.C         	Status: Up-to-date

   Working revision:	1.1042	Tue May 20 18:02:26 2003
   Repository revision:	1.1042	/Projects/namd2/cvsroot/namd2/src/common.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1037)
	release-2-4-beta-2       	(revision: 1.1037)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1036)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1035)
	release-2-2-beta-3       	(revision: 1.1035)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1033)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1025)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday May 20, 19103 @ 13:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	PDB.C 
Log Message:
Changed fputc to fputs, changed some NAMD_die to NAMD_err, and eliminated
checking for system name match in GROMACS code.


===================================================================
File: PDB.C            	Status: Up-to-date

   Working revision:	1.1018	Tue May 20 18:15:56 2003
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/PDB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1017)
	release-2-4              	(revision: 1.1017)
	release-2-4-beta-2       	(revision: 1.1016)
	release-2-4-beta-1       	(revision: 1.1016)
	release-2-3              	(revision: 1.1015)
	release-2-3-beta-2       	(revision: 1.1015)
	release-2-3-beta-1       	(revision: 1.1013)
	release-2-2              	(revision: 1.1013)
	release-2-2-beta-3       	(revision: 1.1013)
	release-2-2-beta-2       	(revision: 1.1013)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1005)
	release-alpha-1          	(revision: 1.1003)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday May 21, 19103 @ 16:51
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv7059

Added Files:
	Linux-i686-GM-icc.arch 
Log Message:
for GM and icc.


===================================================================
File: Linux-i686-GM-icc.arch	Status: Up-to-date

   Working revision:	1.1	Wed May 21 21:51:23 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-GM-icc.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday May 22, 19103 @ 10:40
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp1/namd2

Modified Files:
	config 
Log Message:
Added GM to special flags.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.31	Thu May 22 15:40:15 2003
   Repository revision:	1.31	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.28)
	release-2-4              	(revision: 1.28)
	release-2-4-beta-2       	(revision: 1.28)
	release-2-4-beta-1       	(revision: 1.27)
	release-2-3              	(revision: 1.26)
	release-2-3-beta-2       	(revision: 1.26)
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Friday May 23, 19103 @ 1:53
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv18061

Added Files:
	Linux-ia64-GM-ecc.arch 
Log Message:
for ia64 with ecc and gm.


===================================================================
File: Linux-ia64-GM-ecc.arch	Status: Up-to-date

   Working revision:	1.1	Fri May 23 06:53:43 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-GM-ecc.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 23, 19103 @ 11:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Broadcasts.h Controller.C ScriptTcl.C ScriptTcl.h Sequencer.C 
	Sequencer.h SimParameters.C SimParameters.h 
Log Message:
Added rescalevels command.


===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.15	Thu May 22 22:49:48 2003
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.13)
	release-2-4              	(revision: 1.13)
	release-2-4-beta-2       	(revision: 1.13)
	release-2-4-beta-1       	(revision: 1.13)
	release-2-3              	(revision: 1.13)
	release-2-3-beta-2       	(revision: 1.13)
	release-2-3-beta-1       	(revision: 1.13)
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.13)
	release-2-2-beta-2       	(revision: 1.13)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1176	Thu May 22 22:42:27 2003
   Repository revision:	1.1176	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.49	Thu May 22 23:03:17 2003
   Repository revision:	1.49	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.24	Thu May 22 22:26:01 2003
   Repository revision:	1.24	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.17)
	release-2-4-beta-2       	(revision: 1.17)
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.16)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1139	Thu May 22 22:46:10 2003
   Repository revision:	1.1139	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1041	Thu May 22 22:45:43 2003
   Repository revision:	1.1041	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1035)
	release-2-3              	(revision: 1.1035)
	release-2-3-beta-2       	(revision: 1.1035)
	release-2-3-beta-1       	(revision: 1.1035)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1184	Thu May 22 22:40:54 2003
   Repository revision:	1.1184	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1098	Thu May 22 22:37:22 2003
   Repository revision:	1.1098	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday May 23, 19103 @ 11:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	ug_start.tex 
Log Message:
Added rescalevels command.


===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.14	Thu May 22 22:59:06 2003
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.10)
	release-2-3-beta-2       	(revision: 1.10)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Sunday May 25, 19103 @ 14:45
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	HomePatch.C SimParameters.C 
Log Message:
Test and kill simulation if cell shrinks too much along any dimension.
Also, automatically use non-zero margin with constant pressure methods.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1110	Fri May 23 22:34:56 2003
   Repository revision:	1.1110	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1185	Sun May 25 19:37:19 2003
   Repository revision:	1.1185	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday May 26, 19103 @ 16:20
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Controller.C ReductionMgr.h Sequencer.C 
Log Message:
Reverted kinetic energy and temperature calculations to use centered
velocities, matching 2.5b1.  Halfstep velocities are still used in pressure
calculation, and for TOTAL2 and TOTAL3.  Also changed TOTAL2 to the old
better-conserved TOTAL using 1/3 halfstep and 2/3 centered.  TOTAL3 is
still the short-time conserved value using 2*centered - halfstep shifted
by the average delta to TOTAL2, but the delta average uses the initial
difference rather than 0 to start the averaging process.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1177	Mon May 26 20:51:47 2003
   Repository revision:	1.1177	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1034	Sun May 25 20:02:37 2003
   Repository revision:	1.1034	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1027)
	release-2-4              	(revision: 1.1026)
	release-2-4-beta-2       	(revision: 1.1026)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1025)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1140	Mon May 26 19:58:25 2003
   Repository revision:	1.1140	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday May 27, 19103 @ 15:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedPair.C Controller.C 
	Controller.h HomePatch.C HomePatch.h ReductionMgr.h 
	Sequencer.C 
Log Message:
Added code to check pairlist validity based on motion of atoms relative
to patch center and change in distance to neighboring patches due to
constant pressure.  Pairlists are disabled for computes involving patches
with violations since the last pairlist rebuild.  Warning to user says
that pairlistdist is too small and reduced performance likely.  Changed
margin violation from warning to error since bad results may occur.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1102	Tue May 27 19:25:37 2003
   Repository revision:	1.1102	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1031	Tue May 27 17:33:40 2003
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1025)
	release-2-4              	(revision: 1.1025)
	release-2-4-beta-2       	(revision: 1.1025)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1024)
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1024)
	release-2-2-beta-3       	(revision: 1.1024)
	release-2-2-beta-2       	(revision: 1.1024)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1178	Tue May 27 20:21:14 2003
   Repository revision:	1.1178	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1050	Tue May 27 18:29:04 2003
   Repository revision:	1.1050	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1111	Tue May 27 18:23:25 2003
   Repository revision:	1.1111	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1041	Tue May 27 18:24:27 2003
   Repository revision:	1.1041	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1034)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1032)
	release-2-3-beta-1       	(revision: 1.1032)
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1035	Tue May 27 18:25:25 2003
   Repository revision:	1.1035	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1027)
	release-2-4              	(revision: 1.1026)
	release-2-4-beta-2       	(revision: 1.1026)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1025)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1141	Tue May 27 18:26:12 2003
   Repository revision:	1.1141	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday May 27, 19103 @ 15:42
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Controller.C 
Log Message:
Better margin violation error message.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1179	Tue May 27 20:39:46 2003
   Repository revision:	1.1179	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday May 27, 19103 @ 16:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile 
Log Message:
Changed version to 2.5b2ss03 to indentify as summer school version.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1193	Tue May 27 21:03:55 2003
   Repository revision:	1.1193	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday May 27, 19103 @ 16:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	config 
Log Message:
Capitalize Clustermatic correctly.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.32	Tue May 27 21:30:28 2003
   Repository revision:	1.32	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.28)
	release-2-4              	(revision: 1.28)
	release-2-4-beta-2       	(revision: 1.28)
	release-2-4-beta-1       	(revision: 1.27)
	release-2-3              	(revision: 1.26)
	release-2-3-beta-2       	(revision: 1.26)
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Tuesday May 27, 19103 @ 16:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Added Files:
	Linux-i686-Clustermatic.arch 
Removed Files:
	Linux-i686-ClusterMatic.arch 
Log Message:
Capitalize Clustermatic correctly.


===================================================================
File: Linux-i686-Clustermatic.arch	Status: Up-to-date

   Working revision:	1.1	Tue May 27 21:29:04 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Clustermatic.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file Linux-i686-ClusterMatic.arch		Status: Up-to-date

   Working revision:	No entry for Linux-i686-ClusterMatic.arch
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Attic/Linux-i686-ClusterMatic.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday May 30, 19103 @ 8:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ParseOptions.C 
Log Message:
Die on invalid options in config file.


===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1018	Fri May 30 13:49:48 2003
   Repository revision:	1.1018	/Projects/namd2/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1017)
	release-2-4              	(revision: 1.1017)
	release-2-4-beta-2       	(revision: 1.1017)
	release-2-4-beta-1       	(revision: 1.1017)
	release-2-3              	(revision: 1.1017)
	release-2-3-beta-2       	(revision: 1.1017)
	release-2-3-beta-1       	(revision: 1.1017)
	release-2-2              	(revision: 1.1016)
	release-2-2-beta-3       	(revision: 1.1016)
	release-2-2-beta-2       	(revision: 1.1016)
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday May 30, 19103 @ 9:05
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	HomePatch.C 
Log Message:
Added .01% padding to floating-point comparisons on cell size test that
was causing errors for non-periodic systems.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1112	Fri May 30 14:00:35 2003
   Repository revision:	1.1112	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday May 30, 19103 @ 10:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Fixed problem where water molecules move along electric field when rigid
bonds and langevin dynamics with "langevinHydrogen no" are combined.
Did this by inserting additional rattle1 call before BBK2 velocity damping.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1142	Fri May 30 15:13:19 2003
   Repository revision:	1.1142	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday May 30, 19103 @ 13:01
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
New order: damping, normal forces, rigid bonds, noise, damping, rigid bonds
Old order had rigid bonds between noise and damping, which gave the wrong
temperature when using "langevinHydrogen no".


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1143	Fri May 30 17:43:03 2003
   Repository revision:	1.1143	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday June 9, 19103 @ 14:27
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	dcdlib.C 
Log Message:
Added O_LARGEFILE when opening DCD file.


===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.26	Mon Jun  9 19:27:18 2003
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.19)
	release-2-4              	(revision: 1.19)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.19)
	release-2-3              	(revision: 1.19)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Monday June 9, 19103 @ 14:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	dcdlib.C 
Log Message:
Default definition of O_LARGEFILE for systems that lack it.


===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.27	Mon Jun  9 19:35:04 2003
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.19)
	release-2-4              	(revision: 1.19)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.19)
	release-2-3              	(revision: 1.19)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday June 11, 19103 @ 15:26
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Controller.C Controller.h 
Log Message:
Added averaged pressure profile output.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1180	Wed Jun 11 20:23:46 2003
   Repository revision:	1.1180	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1051	Wed Jun 11 20:06:05 2003
   Repository revision:	1.1051	/home/cvs/namd/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday June 11, 19103 @ 15:33
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Controller.C 
Log Message:
Convert pressure profile output to units of bar.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1181	Wed Jun 11 20:31:29 2003
   Repository revision:	1.1181	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday June 11, 19103 @ 22:26
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Controller.C 
Log Message:
Don't output pressure profile on the first timestep.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1182	Thu Jun 12 03:12:07 2003
   Repository revision:	1.1182	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday June 16, 19103 @ 15:20
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Added Files:
	Tru64-Alpha-Elan-CC.arch 
Removed Files:
	Tru64-Alpha-ELAN-CC.arch 
Log Message:
ELAN -> Elan


===================================================================
File: Tru64-Alpha-Elan-CC.arch	Status: Up-to-date

   Working revision:	1.1	Mon Jun 16 20:19:31 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-Elan-CC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file Tru64-Alpha-ELAN-CC.arch		Status: Up-to-date

   Working revision:	No entry for Tru64-Alpha-ELAN-CC.arch
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Attic/Tru64-Alpha-ELAN-CC.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday June 16, 19103 @ 15:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	config 
Log Message:
Added -Elan flag.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.33	Mon Jun 16 20:21:31 2003
   Repository revision:	1.33	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.28)
	release-2-4              	(revision: 1.28)
	release-2-4-beta-2       	(revision: 1.28)
	release-2-4-beta-1       	(revision: 1.27)
	release-2-3              	(revision: 1.26)
	release-2-3-beta-2       	(revision: 1.26)
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Monday June 16, 19103 @ 16:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Linux-ia64-ecc.arch 
Log Message:
Build static.


===================================================================
File: Linux-ia64-ecc.arch	Status: Up-to-date

   Working revision:	1.5	Mon Jun 16 21:39:38 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-ecc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)


****************************************
Date:	Monday June 16, 19103 @ 18:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile 
Log Message:
Added CFLAGS to all CC lines.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1194	Mon Jun 16 23:55:24 2003
   Repository revision:	1.1194	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday June 16, 19103 @ 19:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Linux-i686-GM-icc.arch Linux-ia64-GM-ecc.arch 
Log Message:
Changed to include non-GM options.


===================================================================
File: Linux-i686-GM-icc.arch	Status: Up-to-date

   Working revision:	1.2	Mon Jun 16 23:58:14 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-GM-icc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-ia64-GM-ecc.arch	Status: Up-to-date

   Working revision:	1.2	Tue Jun 17 00:01:19 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-GM-ecc.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday June 16, 19103 @ 19:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Linux-i686-icc.arch 
Log Message:
Changed to static.


===================================================================
File: Linux-i686-icc.arch	Status: Up-to-date

   Working revision:	1.6	Tue Jun 17 00:02:34 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-icc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Tuesday June 17, 19103 @ 10:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory umbriel:/var/tmp/namd2/arch

Modified Files:
	Linux-i686-Clustermatic.arch Linux-i686-g++.arch 
Log Message:
Make ClusterMatic work in (faster!) SMP mode.


===================================================================
File: Linux-i686-Clustermatic.arch	Status: Up-to-date

   Working revision:	1.2	Mon Jun  2 20:52:56 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Clustermatic.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-g++.arch	Status: Up-to-date

   Working revision:	1.6	Mon Jun  2 21:01:15 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-g++.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Tuesday June 17, 19103 @ 14:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory umbriel:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	AIX-RS6000-xlC.arch 
Added Files:
	Linux-i686-SMP-icc.arch 
Log Message:
SMP with icc!


===================================================================
File: Linux-i686-SMP-icc.arch	Status: Up-to-date

   Working revision:	1.1	Tue Jun 17 19:09:33 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-SMP-icc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: AIX-RS6000-xlC.arch	Status: Up-to-date

   Working revision:	1.6	Tue Jun 17 15:13:36 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000-xlC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)


****************************************
Date:	Tuesday June 17, 19103 @ 14:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory umbriel:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Added Files:
	Solaris-Sparc-SMP-CC.arch 
Log Message:
Added Solaris-SMP.


===================================================================
File: Solaris-Sparc-SMP-CC.arch	Status: Up-to-date

   Working revision:	1.1	Tue Jun 17 19:12:29 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc-SMP-CC.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday June 18, 19103 @ 9:55
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Controller.C 
Log Message:
Undo the last change; we really do need to output the pressure profile 
on the first timestep.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1183	Wed Jun 18 14:51:10 2003
   Repository revision:	1.1183	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday June 20, 19103 @ 11:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv1404

Added Files:
	AIX-RS6000-SMP-xlC.arch 
Log Message:
SMP version.


===================================================================
File: AIX-RS6000-SMP-xlC.arch	Status: Up-to-date

   Working revision:	1.1	Fri Jun 20 16:16:35 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000-SMP-xlC.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday June 20, 19103 @ 12:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv2314

Modified Files:
	Linux-i686-Scyld-icc.arch 
Added Files:
	Linux-i686-Clustermatic-icc.arch 
Log Message:
Use SMP versions.


===================================================================
File: Linux-i686-Clustermatic-icc.arch	Status: Up-to-date

   Working revision:	1.1	Fri Jun 20 17:37:22 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Clustermatic-icc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-Scyld-icc.arch	Status: Up-to-date

   Working revision:	1.2	Fri Jun 20 17:37:22 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Scyld-icc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Monday June 23, 19103 @ 16:01
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	AIX-RS6000-xlC.arch 
Log Message:
Added -bmaxdata:0x80000000 to fix crashes on one processor.
Also removed extraneous -DCMK_OPTIMIZE.


===================================================================
File: AIX-RS6000-xlC.arch	Status: Up-to-date

   Working revision:	1.7	Mon Jun 23 20:56:47 2003
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000-xlC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)


****************************************
Date:	Monday June 23, 19103 @ 16:01
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	HPUX-ia64-aCC.arch Linux-ia64-ecc.arch 
	Tru64-Alpha-Elan-CC.arch 
Log Message:
Removed extraneous -DCMK_OPTIMIZE.


===================================================================
File: HPUX-ia64-aCC.arch	Status: Up-to-date

   Working revision:	1.2	Mon Jun 23 20:58:35 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/HPUX-ia64-aCC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-ia64-ecc.arch	Status: Up-to-date

   Working revision:	1.6	Mon Jun 23 20:59:24 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-ecc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)

===================================================================
File: Tru64-Alpha-Elan-CC.arch	Status: Up-to-date

   Working revision:	1.2	Mon Jun 23 20:59:30 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-Elan-CC.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday June 23, 19103 @ 16:50
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2
In directory hanoi:/tmp/cvs-serv24110

Modified Files:
	Makefile 
Log Message:
when compiling with trace projections, don't use tracemode all because trace projector is generating too many files.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1195	Mon Jun 23 21:50:08 2003
   Repository revision:	1.1195	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday June 23, 19103 @ 17:16
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	dcdlib.C 
Log Message:
Deal with possibly missing username.


===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.28	Mon Jun 23 22:11:18 2003
   Repository revision:	1.28	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.19)
	release-2-4              	(revision: 1.19)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.19)
	release-2-3              	(revision: 1.19)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Friday June 27, 19103 @ 15:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Linux-i686-Clustermatic.arch Linux-i686-g++.arch 
Log Message:
Changes to allow usable builds on umbriel.


===================================================================
File: Linux-i686-Clustermatic.arch	Status: Up-to-date

   Working revision:	1.3	Tue Jun 24 15:34:26 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Clustermatic.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-g++.arch	Status: Up-to-date

   Working revision:	1.7	Fri Jun 27 20:19:02 2003
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-g++.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Saturday June 28, 19103 @ 17:49
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/src
In directory philo.ks.uiuc.edu:/Home/s1/fzhu/namd/namd2/src

Modified Files:
	ComputeGlobal.C ComputeGlobal.h ComputeGlobalMsgs.C 
	ComputeGlobalMsgs.h ComputeMgr.h GlobalMaster.C GlobalMaster.h 
	GlobalMasterServer.C GlobalMasterServer.h GlobalMasterTcl.C 
	GlobalMasterTcl.h HomePatch.h Node.h Sequencer.C 
Log Message:
Implemented the "loadtotalforces" TCL command.


===================================================================
File: ComputeGlobal.C  	Status: Up-to-date

   Working revision:	1.34	Thu Jun 26 21:34:25 2003
   Repository revision:	1.34	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.28)
	release-2-3-beta-2       	(revision: 1.28)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.23)
	release-2-2-beta-1       	(revision: 1.23)
	release-2-1              	(revision: 1.18)
	release-2-1-beta-4       	(revision: 1.18)
	release-2-1-beta-3       	(revision: 1.18)
	release-2-1-beta-2       	(revision: 1.18)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.11)

===================================================================
File: ComputeGlobal.h  	Status: Up-to-date

   Working revision:	1.13	Thu Jun 26 18:02:21 2003
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/ComputeGlobal.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.11)
	release-2-4-beta-2       	(revision: 1.11)
	release-2-4-beta-1       	(revision: 1.11)
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ComputeGlobalMsgs.C	Status: Up-to-date

   Working revision:	1.11	Thu Jun 26 22:07:28 2003
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMsgs.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.10)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ComputeGlobalMsgs.h	Status: Up-to-date

   Working revision:	1.10	Thu Jun 26 17:04:34 2003
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/ComputeGlobalMsgs.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.9)
	release-2-4              	(revision: 1.9)
	release-2-4-beta-2       	(revision: 1.9)
	release-2-4-beta-1       	(revision: 1.9)
	release-2-3              	(revision: 1.7)
	release-2-3-beta-2       	(revision: 1.7)
	release-2-3-beta-1       	(revision: 1.7)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1025	Thu Jun 26 06:16:50 2003
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1023)
	release-2-4              	(revision: 1.1023)
	release-2-4-beta-2       	(revision: 1.1023)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1021)
	release-2-3-beta-2       	(revision: 1.1021)
	release-2-3-beta-1       	(revision: 1.1021)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1013)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: GlobalMaster.C   	Status: Up-to-date

   Working revision:	1.4	Thu Jun 26 22:57:37 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/GlobalMaster.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)

===================================================================
File: GlobalMaster.h   	Status: Up-to-date

   Working revision:	1.5	Thu Jun 26 20:39:27 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/GlobalMaster.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)

===================================================================
File: GlobalMasterServer.C	Status: Up-to-date

   Working revision:	1.4	Thu Jun 26 22:48:13 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/GlobalMasterServer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)

===================================================================
File: GlobalMasterServer.h	Status: Up-to-date

   Working revision:	1.3	Thu Jun 26 18:59:25 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/GlobalMasterServer.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)

===================================================================
File: GlobalMasterTcl.C	Status: Up-to-date

   Working revision:	1.10	Thu Jun 26 23:45:43 2003
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)

===================================================================
File: GlobalMasterTcl.h	Status: Up-to-date

   Working revision:	1.4	Thu Jun 26 20:58:14 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1042	Thu Jun 26 07:31:46 2003
   Repository revision:	1.1042	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1034)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1032)
	release-2-3-beta-1       	(revision: 1.1032)
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1032	Wed Jun 25 21:39:31 2003
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1030)
	release-2-3              	(revision: 1.1030)
	release-2-3-beta-2       	(revision: 1.1030)
	release-2-3-beta-1       	(revision: 1.1030)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1028)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1144	Thu Jun 26 22:23:33 2003
   Repository revision:	1.1144	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday June 28, 19103 @ 17:50
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/ug
In directory philo.ks.uiuc.edu:/Home/s1/fzhu/namd/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Implemented the "loadtotalforces" TCL command.
Added user documentation for the "loadtotalforces" command.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.53	Sat Jun 28 22:42:08 2003
   Repository revision:	1.53	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Saturday June 28, 19103 @ 21:09
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Controller.C 
Log Message:
Do output the averaged pressure profile on the first timestep.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1184	Thu Jun 26 00:57:02 2003
   Repository revision:	1.1184	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 1, 19103 @ 13:31
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedPair.C 
	ComputeNonbondedPair.h ComputeNonbondedSelf.C 
	ComputeNonbondedSelf.h ComputeNonbondedUtil.C 
	ComputeNonbondedUtil.h Controller.C HomePatch.C HomePatch.h 
	PatchTypes.h Sequencer.C Sequencer.h SimParameters.C 
	SimParameters.h 
Log Message:
Automatic pairlistdist adjustment, multiple pairlist regeneration per cycle.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1103	Tue Jun 24 16:21:49 2003
   Repository revision:	1.1103	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1032	Mon Jun 30 22:30:13 2003
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1025)
	release-2-4              	(revision: 1.1025)
	release-2-4-beta-2       	(revision: 1.1025)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1024)
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1024)
	release-2-2-beta-3       	(revision: 1.1024)
	release-2-2-beta-2       	(revision: 1.1024)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.h	Status: Up-to-date

   Working revision:	1.1016	Mon Jun 30 21:57:07 2003
   Repository revision:	1.1016	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedPair.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1013)
	release-2-4              	(revision: 1.1013)
	release-2-4-beta-2       	(revision: 1.1013)
	release-2-4-beta-1       	(revision: 1.1013)
	release-2-3              	(revision: 1.1013)
	release-2-3-beta-2       	(revision: 1.1013)
	release-2-3-beta-1       	(revision: 1.1013)
	release-2-2              	(revision: 1.1013)
	release-2-2-beta-3       	(revision: 1.1013)
	release-2-2-beta-2       	(revision: 1.1013)
	release-2-2-beta-1       	(revision: 1.1013)
	release-2-1              	(revision: 1.1011)
	release-2-1-beta-4       	(revision: 1.1011)
	release-2-1-beta-3       	(revision: 1.1011)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1007)
	release-2-0              	(revision: 1.1007)
	release-2-0-beta-3       	(revision: 1.1007)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1006)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1025	Mon Jun 30 22:30:00 2003
   Repository revision:	1.1025	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1020)
	release-2-4              	(revision: 1.1020)
	release-2-4-beta-2       	(revision: 1.1020)
	release-2-4-beta-1       	(revision: 1.1020)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1019)
	release-2-2-beta-3       	(revision: 1.1019)
	release-2-2-beta-2       	(revision: 1.1019)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.h	Status: Up-to-date

   Working revision:	1.1014	Mon Jun 30 22:09:31 2003
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedSelf.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1011)
	release-2-4              	(revision: 1.1011)
	release-2-4-beta-2       	(revision: 1.1011)
	release-2-4-beta-1       	(revision: 1.1011)
	release-2-3              	(revision: 1.1011)
	release-2-3-beta-2       	(revision: 1.1011)
	release-2-3-beta-1       	(revision: 1.1011)
	release-2-2              	(revision: 1.1011)
	release-2-2-beta-3       	(revision: 1.1011)
	release-2-2-beta-2       	(revision: 1.1011)
	release-2-2-beta-1       	(revision: 1.1011)
	release-2-1              	(revision: 1.1010)
	release-2-1-beta-4       	(revision: 1.1010)
	release-2-1-beta-3       	(revision: 1.1010)
	release-2-1-beta-2       	(revision: 1.1010)
	release-2-1-beta-1       	(revision: 1.1008)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1004)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1072	Mon Jun 30 22:11:29 2003
   Repository revision:	1.1072	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.h	Status: Up-to-date

   Working revision:	1.1046	Mon Jun 30 22:11:00 2003
   Repository revision:	1.1046	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1028)
	release-2-3-beta-1       	(revision: 1.1027)
	release-2-2              	(revision: 1.1027)
	release-2-2-beta-3       	(revision: 1.1027)
	release-2-2-beta-2       	(revision: 1.1027)
	release-2-2-beta-1       	(revision: 1.1026)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1185	Tue Jul  1 16:16:08 2003
   Repository revision:	1.1185	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1113	Tue Jul  1 16:00:53 2003
   Repository revision:	1.1113	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: HomePatch.h      	Status: Up-to-date

   Working revision:	1.1043	Tue Jul  1 14:50:54 2003
   Repository revision:	1.1043	/Projects/namd2/cvsroot/namd2/src/HomePatch.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1034)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1032)
	release-2-3-beta-2       	(revision: 1.1032)
	release-2-3-beta-1       	(revision: 1.1032)
	release-2-2              	(revision: 1.1030)
	release-2-2-beta-3       	(revision: 1.1030)
	release-2-2-beta-2       	(revision: 1.1030)
	release-2-2-beta-1       	(revision: 1.1030)
	release-2-1              	(revision: 1.1026)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1026)
	release-2-1-beta-2       	(revision: 1.1026)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1018)
	release-2-0              	(revision: 1.1018)
	release-2-0-beta-3       	(revision: 1.1017)
	release-2-0-beta-2       	(revision: 1.1017)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchTypes.h     	Status: Up-to-date

   Working revision:	1.17	Mon Jun 30 21:25:05 2003
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/PatchTypes.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.14)
	release-2-4              	(revision: 1.14)
	release-2-4-beta-2       	(revision: 1.14)
	release-2-4-beta-1       	(revision: 1.14)
	release-2-3              	(revision: 1.14)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.14)
	release-2-2-beta-3       	(revision: 1.14)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.13)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.9)
	release-2-0-beta-2       	(revision: 1.9)
	release-alpha-1          	(revision: 1.8)
	development-4            	(revision: 1.8)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1145	Tue Jul  1 15:45:06 2003
   Repository revision:	1.1145	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1042	Tue Jul  1 15:26:23 2003
   Repository revision:	1.1042	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1035)
	release-2-3              	(revision: 1.1035)
	release-2-3-beta-2       	(revision: 1.1035)
	release-2-3-beta-1       	(revision: 1.1035)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1186	Tue Jul  1 18:10:28 2003
   Repository revision:	1.1186	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1099	Tue Jul  1 16:06:59 2003
   Repository revision:	1.1099	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 1, 19103 @ 16:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Fixed typo in FFTWEstimate definition.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1187	Tue Jul  1 21:14:32 2003
   Repository revision:	1.1187	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 1, 19103 @ 16:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Fixed seg fault caused by FFTW plan creation.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1188	Tue Jul  1 21:34:44 2003
   Repository revision:	1.1188	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 1, 19103 @ 17:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C 
Log Message:
Use estimate for distributed planning too, since estimates are apparently
not considered wisdom.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.70	Tue Jul  1 22:30:03 2003
   Repository revision:	1.70	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)


****************************************
Date:	Wednesday July 2, 19103 @ 11:07
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv11766

Modified Files:
	Molecule.C 
Log Message:
Handle rigid waters without angles by using third bond (common in AMBER).


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1082	Wed Jul  2 16:07:47 2003
   Repository revision:	1.1082	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 2, 19103 @ 11:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile 
Log Message:
Version changed to 2.5b2pre1


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1196	Wed Jul  2 16:13:49 2003
   Repository revision:	1.1196	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 3, 19103 @ 13:31
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputeNonbondedUtil.C 
Log Message:
Made FEP work when outputEnergies != 1.  Calculate energies at every step.


===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1073	Thu Jul  3 18:25:18 2003
   Repository revision:	1.1073	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday July 4, 19103 @ 12:02
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Docs updated for new pressure profile behavior.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.54	Tue Jul  1 21:37:52 2003
   Repository revision:	1.54	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday July 4, 19103 @ 12:15
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Added Jim's stock Langevin Piston email response to the User's Guide.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.55	Fri Jul  4 17:11:01 2003
   Repository revision:	1.55	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Monday July 7, 19103 @ 10:21
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeHomeTuples.h ComputeNonbondedPair.C 
	ComputeNonbondedSelf.C Controller.C ReductionMgr.h Sequencer.C 
Log Message:
Use new PPROFILE reduction in place of USER1.


===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1038	Mon Jul  7 15:07:20 2003
   Repository revision:	1.1038	/home/cvs/namd/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1033)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1033)
	release-2-3-beta-2       	(revision: 1.1033)
	release-2-3-beta-1       	(revision: 1.1033)
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1033	Mon Jul  7 15:07:41 2003
   Repository revision:	1.1033	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1025)
	release-2-4              	(revision: 1.1025)
	release-2-4-beta-2       	(revision: 1.1025)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1024)
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1024)
	release-2-2-beta-3       	(revision: 1.1024)
	release-2-2-beta-2       	(revision: 1.1024)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1026	Mon Jul  7 15:07:34 2003
   Repository revision:	1.1026	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1020)
	release-2-4              	(revision: 1.1020)
	release-2-4-beta-2       	(revision: 1.1020)
	release-2-4-beta-1       	(revision: 1.1020)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1019)
	release-2-2-beta-3       	(revision: 1.1019)
	release-2-2-beta-2       	(revision: 1.1019)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1186	Mon Jul  7 15:15:54 2003
   Repository revision:	1.1186	/home/cvs/namd/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1036	Mon Jul  7 15:06:56 2003
   Repository revision:	1.1036	/home/cvs/namd/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1027)
	release-2-4              	(revision: 1.1026)
	release-2-4-beta-2       	(revision: 1.1026)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1025)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1146	Mon Jul  7 15:07:57 2003
   Repository revision:	1.1146	/home/cvs/namd/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 10, 19103 @ 18:46
Author:	sameer

Update of /Projects/namd2/cvsroot/namd2/src
In directory lusaka.ks.uiuc.edu:/tmp/cvs-serv8591

Modified Files:
	LdbCoordinator.C 
Log Message:
This is only relavant to the elan version of Charm++.
It allows flexibility to enable and disable blocking receives in Namd. This has been turned off 
by default. To turn it on you need to make sure that the largest message sent or received by 
Namd is smaller than SMALL_MESSAGE_SIZE. This is because it is going to block on the small 
message queue. Otherwise programs may hang.



===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.70	Thu Jul 10 23:46:01 2003
   Repository revision:	1.70	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Tuesday July 15, 19103 @ 10:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Tru64-Alpha-CC.arch Tru64-Alpha-Elan-CC.arch 
	Tru64-Alpha-MPI-CC.arch 
Log Message:
Merged options and added -use_non_shared_libcxx.


===================================================================
File: Tru64-Alpha-CC.arch	Status: Up-to-date

   Working revision:	1.5	Tue Jul 15 15:45:38 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-CC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Tru64-Alpha-Elan-CC.arch	Status: Up-to-date

   Working revision:	1.3	Tue Jul 15 15:44:54 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-Elan-CC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Tru64-Alpha-MPI-CC.arch	Status: Up-to-date

   Working revision:	1.5	Tue Jul 15 15:44:58 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-MPI-CC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Tuesday July 15, 19103 @ 10:46
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Linux-i686-icc.arch Linux-ia64-ecc.arch 
Log Message:
Removed -static.


===================================================================
File: Linux-i686-icc.arch	Status: Up-to-date

   Working revision:	1.7	Tue Jul 15 15:41:49 2003
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-icc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: Linux-ia64-ecc.arch	Status: Up-to-date

   Working revision:	1.7	Tue Jul 15 15:42:11 2003
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-ecc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)


****************************************
Date:	Tuesday July 15, 19103 @ 11:12
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory lisboa.ks.uiuc.edu:/var/tmp/namd2/arch

Modified Files:
	Linux-i686-Clustermatic-icc.arch Linux-i686-Scyld-icc.arch 
	Linux-i686-icc.arch 
Log Message:
Moved from smp to tcp for production builds.


===================================================================
File: Linux-i686-Clustermatic-icc.arch	Status: Up-to-date

   Working revision:	1.2	Tue Jul 15 15:58:21 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Clustermatic-icc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-Scyld-icc.arch	Status: Up-to-date

   Working revision:	1.3	Tue Jul 15 16:00:48 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Scyld-icc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: Linux-i686-icc.arch	Status: Up-to-date

   Working revision:	1.8	Tue Jul 15 16:01:36 2003
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-icc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Monday July 21, 19103 @ 11:32
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv24218

Added Files:
	Linux-i686-g++-opteron.arch 
Log Message:
tested and works now on AMD/Opteron.


===================================================================
File: Linux-i686-g++-opteron.arch	Status: Up-to-date

   Working revision:	1.1	Mon Jul 21 16:32:04 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-g++-opteron.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday July 22, 19103 @ 10:06
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/src
In directory philo.ks.uiuc.edu:/home/fzhu/namd/namd2/src

Modified Files:
	GlobalMasterTcl.C TclCommands.C TclCommands.h 
Log Message:
Implemented 5 Tcl routines: getbond, getangle, getdihedral, anglegrad, dihedralgrad.


===================================================================
File: GlobalMasterTcl.C	Status: Up-to-date

   Working revision:	1.11	Mon Jul 21 23:12:34 2003
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)

===================================================================
File: TclCommands.C    	Status: Up-to-date

   Working revision:	1.12	Mon Jul 21 23:02:57 2003
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/TclCommands.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.11)
	release-2-4-beta-2       	(revision: 1.11)
	release-2-4-beta-1       	(revision: 1.11)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.10)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: TclCommands.h    	Status: Up-to-date

   Working revision:	1.8	Mon Jul 21 23:10:47 2003
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/TclCommands.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.7)
	release-2-4              	(revision: 1.7)
	release-2-4-beta-2       	(revision: 1.7)
	release-2-4-beta-1       	(revision: 1.7)
	release-2-3              	(revision: 1.7)
	release-2-3-beta-2       	(revision: 1.7)
	release-2-3-beta-1       	(revision: 1.7)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Tuesday July 22, 19103 @ 10:07
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/ug
In directory philo.ks.uiuc.edu:/home/fzhu/namd/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Added documentation for 5 Tcl routines.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.56	Tue Jul 22 14:53:04 2003
   Repository revision:	1.56	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Tuesday July 22, 19103 @ 10:43
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv26270

Added Files:
	CRAY-X1.arch CRAY-X1.base CRAY-X1.fftw CRAY-X1.tcl 
Log Message:
config files for Cray X1.


===================================================================
File: CRAY-X1.arch     	Status: Up-to-date

   Working revision:	1.1	Tue Jul 22 15:43:51 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/CRAY-X1.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: CRAY-X1.base     	Status: Up-to-date

   Working revision:	1.1	Tue Jul 22 15:43:51 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/CRAY-X1.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: CRAY-X1.fftw     	Status: Up-to-date

   Working revision:	1.1	Tue Jul 22 15:43:51 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/CRAY-X1.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: CRAY-X1.tcl      	Status: Up-to-date

   Working revision:	1.1	Tue Jul 22 15:43:51 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/CRAY-X1.tcl,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Saturday July 26, 19103 @ 14:18
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv8403

Modified Files:
	Controller.C 
Log Message:
converted TIMING output from iout to CmiPrintf method. iout using iostream(?) seems doesnot give correct double output on cray x1.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1187	Sat Jul 26 19:18:23 2003
   Repository revision:	1.1187	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday July 26, 19103 @ 15:51
Author:	sameer

Update of /home/cvs/namd/cvsroot/namd2/src
In directory havana:/tmp/cvs-serv4962

Modified Files:
	ComputePme.C main.C main.ci 
Log Message:
Adding communication library support to NAMD. This is now turned on by default.  But the default strategy directly sends PME messages. To use a 2DMESH or a 3DGRID based combining strategy use the command line option  
     +strategy USE_MESH 
 	OR
     +strategy USE_GRID


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.71	Sat Jul 26 20:51:28 2003
   Repository revision:	1.71	/home/cvs/namd/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1048	Sat Jul 26 20:51:28 2003
   Repository revision:	1.1048	/home/cvs/namd/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1044)
	release-2-4              	(revision: 1.1044)
	release-2-4-beta-2       	(revision: 1.1044)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1044)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1040)
	release-2-2-beta-3       	(revision: 1.1040)
	release-2-2-beta-2       	(revision: 1.1040)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.ci          	Status: Up-to-date

   Working revision:	1.1014	Sat Jul 26 20:51:28 2003
   Repository revision:	1.1014	/home/cvs/namd/cvsroot/namd2/src/main.ci,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1011)
	release-2-4              	(revision: 1.1011)
	release-2-4-beta-2       	(revision: 1.1011)
	release-2-4-beta-1       	(revision: 1.1011)
	release-2-3              	(revision: 1.1010)
	release-2-3-beta-2       	(revision: 1.1010)
	release-2-3-beta-1       	(revision: 1.1010)
	release-2-2              	(revision: 1.1010)
	release-2-2-beta-3       	(revision: 1.1010)
	release-2-2-beta-2       	(revision: 1.1010)
	release-2-2-beta-1       	(revision: 1.1010)
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1005)
	release-2-1-beta-1       	(revision: 1.1003)
	release-2-0-pre-charm-syntax	(revision: 1.1002)
	release-2-0              	(revision: 1.1002)
	release-2-0-beta-3       	(revision: 1.1002)
	release-2-0-beta-2       	(revision: 1.1002)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Saturday July 26, 19103 @ 15:54
Author:	sameer

Update of /home/cvs/namd/cvsroot/namd2
In directory havana:/tmp/cvs-serv5047

Modified Files:
	Makefile 
Log Message:
makefile changes for the communication library 


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1197	Sat Jul 26 20:54:06 2003
   Repository revision:	1.1197	/home/cvs/namd/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday July 28, 19103 @ 17:47
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeHomeTuples.h ComputeNonbondedPair.C 
	ComputeNonbondedSelf.C SimParameters.C 
Log Message:
Pressure profile calculations can now be done with constant pressure.


===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1039	Mon Jul 28 22:39:19 2003
   Repository revision:	1.1039	/home/cvs/namd/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1033)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1033)
	release-2-3-beta-2       	(revision: 1.1033)
	release-2-3-beta-1       	(revision: 1.1033)
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedPair.C	Status: Up-to-date

   Working revision:	1.1034	Mon Jul 28 22:39:11 2003
   Repository revision:	1.1034	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedPair.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1025)
	release-2-4              	(revision: 1.1025)
	release-2-4-beta-2       	(revision: 1.1025)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1024)
	release-2-3-beta-2       	(revision: 1.1024)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1024)
	release-2-2-beta-3       	(revision: 1.1024)
	release-2-2-beta-2       	(revision: 1.1024)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1022)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1017)
	release-2-0              	(revision: 1.1017)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1016)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1012)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedSelf.C	Status: Up-to-date

   Working revision:	1.1027	Mon Jul 28 21:34:06 2003
   Repository revision:	1.1027	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedSelf.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1020)
	release-2-4              	(revision: 1.1020)
	release-2-4-beta-2       	(revision: 1.1020)
	release-2-4-beta-1       	(revision: 1.1020)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1019)
	release-2-2              	(revision: 1.1019)
	release-2-2-beta-3       	(revision: 1.1019)
	release-2-2-beta-2       	(revision: 1.1019)
	release-2-2-beta-1       	(revision: 1.1019)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1012)
	release-2-0              	(revision: 1.1012)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1189	Mon Jul 28 21:39:37 2003
   Repository revision:	1.1189	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday July 28, 19103 @ 17:47
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/ug
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Updated docs for new pressure profile behavior.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.57	Mon Jul 28 22:46:26 2003
   Repository revision:	1.57	/home/cvs/namd/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Monday July 28, 19103 @ 17:55
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Oops, forgot to added constant pressure support to the kinetic part of
the pressure profile.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1147	Mon Jul 28 22:51:27 2003
   Repository revision:	1.1147	/home/cvs/namd/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday July 28, 19103 @ 20:56
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	Sequencer.C 
Log Message:
Fixed stupid bug in kinetic pressure profile introduced in last commit.


===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1148	Tue Jul 29 01:52:58 2003
   Repository revision:	1.1148	/home/cvs/namd/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday July 28, 19103 @ 21:13
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory cancun:/tmp/cvs-serv8149

Modified Files:
	TclCommands.C 
Log Message:
Changes to please the Intel compiler.


===================================================================
File: TclCommands.C    	Status: Up-to-date

   Working revision:	1.13	Tue Jul 29 02:13:06 2003
   Repository revision:	1.13	/home/cvs/namd/cvsroot/namd2/src/TclCommands.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.11)
	release-2-4-beta-2       	(revision: 1.11)
	release-2-4-beta-1       	(revision: 1.11)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.10)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Monday July 28, 19103 @ 23:06
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ComputeHomeTuples.h ComputeNonbondedUtil.C DumpBenchParams.h 
	HomePatch.C SimParameters.C SimParameters.h 
Log Message:
Eliminated cached pressureProfileThickness and pressureProfileMin from 
SimParameters since these must in general be computed from Lattice.


===================================================================
File: ComputeHomeTuples.h	Status: Up-to-date

   Working revision:	1.1040	Tue Jul 29 02:33:30 2003
   Repository revision:	1.1040	/home/cvs/namd/cvsroot/namd2/src/ComputeHomeTuples.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1033)
	release-2-4              	(revision: 1.1033)
	release-2-4-beta-2       	(revision: 1.1033)
	release-2-4-beta-1       	(revision: 1.1033)
	release-2-3              	(revision: 1.1033)
	release-2-3-beta-2       	(revision: 1.1033)
	release-2-3-beta-1       	(revision: 1.1033)
	release-2-2              	(revision: 1.1033)
	release-2-2-beta-3       	(revision: 1.1033)
	release-2-2-beta-2       	(revision: 1.1033)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1022)
	release-2-1-beta-3       	(revision: 1.1022)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1021)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1011)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1074	Tue Jul 29 02:36:01 2003
   Repository revision:	1.1074	/home/cvs/namd/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: DumpBenchParams.h	Status: Up-to-date

   Working revision:	1.2	Tue Jul 29 02:39:05 2003
   Repository revision:	1.2	/home/cvs/namd/cvsroot/namd2/src/DumpBenchParams.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1114	Tue Jul 29 02:42:33 2003
   Repository revision:	1.1114	/home/cvs/namd/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1190	Tue Jul 29 02:47:13 2003
   Repository revision:	1.1190	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1100	Tue Jul 29 02:29:28 2003
   Repository revision:	1.1100	/home/cvs/namd/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday July 29, 19103 @ 16:22
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Tru64-Alpha-CC.arch Tru64-Alpha-Elan-CC.arch 
	Tru64-Alpha-MPI-CC.arch 
Log Message:
Made alpha workstation build non_shared, keep others use_non_shared_libcxx.


===================================================================
File: Tru64-Alpha-CC.arch	Status: Up-to-date

   Working revision:	1.6	Tue Jul 29 21:19:42 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-CC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Tru64-Alpha-Elan-CC.arch	Status: Up-to-date

   Working revision:	1.4	Tue Jul 29 21:18:53 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-Elan-CC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Tru64-Alpha-MPI-CC.arch	Status: Up-to-date

   Working revision:	1.6	Tue Jul 29 21:18:41 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-MPI-CC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Wednesday July 30, 19103 @ 12:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	ComputePme.C ComputePme.h Controller.C ReductionMgr.h 
Log Message:
Better errors and tolerance for PME stray charge errors.


===================================================================
File: ComputePme.C     	Status: Up-to-date

   Working revision:	1.72	Wed Jul 30 17:46:58 2003
   Repository revision:	1.72	/Projects/namd2/cvsroot/namd2/src/ComputePme.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.52)
	release-2-4              	(revision: 1.52)
	release-2-4-beta-2       	(revision: 1.50)
	release-2-4-beta-1       	(revision: 1.48)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.31)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.26)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)

===================================================================
File: ComputePme.h     	Status: Up-to-date

   Working revision:	1.21	Wed Jul 23 19:31:30 2003
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/src/ComputePme.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.17)
	release-2-4-beta-2       	(revision: 1.16)
	release-2-4-beta-1       	(revision: 1.14)
	release-2-3              	(revision: 1.11)
	release-2-3-beta-2       	(revision: 1.11)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1188	Wed Jul 30 17:46:59 2003
   Repository revision:	1.1188	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ReductionMgr.h   	Status: Up-to-date

   Working revision:	1.1037	Wed Jul 23 19:33:44 2003
   Repository revision:	1.1037	/Projects/namd2/cvsroot/namd2/src/ReductionMgr.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1027)
	release-2-4              	(revision: 1.1026)
	release-2-4-beta-2       	(revision: 1.1026)
	release-2-4-beta-1       	(revision: 1.1025)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1025)
	release-2-1              	(revision: 1.1021)
	release-2-1-beta-4       	(revision: 1.1021)
	release-2-1-beta-3       	(revision: 1.1021)
	release-2-1-beta-2       	(revision: 1.1021)
	release-2-1-beta-1       	(revision: 1.1018)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1014)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1006)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday July 30, 19103 @ 13:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Tru64-Alpha-CC.arch Tru64-Alpha-Elan-CC.arch 
	Tru64-Alpha-MPI-CC.arch 
Log Message:
Reverting to dynamic builds on jonas.


===================================================================
File: Tru64-Alpha-CC.arch	Status: Up-to-date

   Working revision:	1.7	Wed Jul 30 18:06:36 2003
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-CC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Tru64-Alpha-Elan-CC.arch	Status: Up-to-date

   Working revision:	1.5	Wed Jul 30 18:06:28 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-Elan-CC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Tru64-Alpha-MPI-CC.arch	Status: Up-to-date

   Working revision:	1.7	Wed Jul 30 18:06:21 2003
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha-MPI-CC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)


****************************************
Date:	Thursday July 31, 19103 @ 16:04
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv27686

Modified Files:
	ConfigList.C FreeEnergyParse.C FreeEnergyRMgr.C 
	FreeEnergyRestrain.C InfoStream.h 
Log Message:
fixed compiler errors for gcc3.3, strstream.h is replaced with <strstream>.
use Charm++'s auto config script to determine the header file (need to include conv-config.h from charm++). For non dot header file, need to add "using namespace std" in InfoStream.h.


===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1019	Thu Jul 31 21:04:33 2003
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1018)
	release-2-4              	(revision: 1.1018)
	release-2-4-beta-2       	(revision: 1.1018)
	release-2-4-beta-1       	(revision: 1.1018)
	release-2-3              	(revision: 1.1017)
	release-2-3-beta-2       	(revision: 1.1017)
	release-2-3-beta-1       	(revision: 1.1017)
	release-2-2              	(revision: 1.1016)
	release-2-2-beta-3       	(revision: 1.1016)
	release-2-2-beta-2       	(revision: 1.1016)
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: FreeEnergyParse.C	Status: Up-to-date

   Working revision:	1.13	Thu Jul 31 21:04:34 2003
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/FreeEnergyParse.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.10)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.9)
	release-2-3-beta-2       	(revision: 1.9)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyRMgr.C 	Status: Up-to-date

   Working revision:	1.8	Thu Jul 31 21:04:34 2003
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.7)
	release-2-4              	(revision: 1.7)
	release-2-4-beta-2       	(revision: 1.7)
	release-2-4-beta-1       	(revision: 1.7)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: FreeEnergyRestrain.C	Status: Up-to-date

   Working revision:	1.11	Thu Jul 31 21:04:34 2003
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/src/FreeEnergyRestrain.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.10)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.9)
	release-2-3-beta-2       	(revision: 1.9)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1013	Thu Jul 31 21:04:34 2003
   Repository revision:	1.1013	/Projects/namd2/cvsroot/namd2/src/InfoStream.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1010)
	release-2-4              	(revision: 1.1010)
	release-2-4-beta-2       	(revision: 1.1010)
	release-2-4-beta-1       	(revision: 1.1010)
	release-2-3              	(revision: 1.1010)
	release-2-3-beta-2       	(revision: 1.1010)
	release-2-3-beta-1       	(revision: 1.1009)
	release-2-2              	(revision: 1.1008)
	release-2-2-beta-3       	(revision: 1.1008)
	release-2-2-beta-2       	(revision: 1.1008)
	release-2-2-beta-1       	(revision: 1.1008)
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday July 31, 19103 @ 18:15
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv28389

Modified Files:
	AlgNbor.C AlgRecBisection.C AlgSeven.C Controller.h 
	FreeEnergyAssert.C FreeEnergyLambdMgr.C FreeEnergyLambda.C 
	FreeEnergyVector.C GlobalMasterFreeEnergy.C ParseOptions.C 
	Rebalancer.C SimParameters.C UniqueSetIter.h 
Log Message:
fixed broken compiler on AIX due to the previous change of <iostream>. 


===================================================================
File: AlgNbor.C        	Status: Up-to-date

   Working revision:	1.6	Thu Jul 31 23:15:16 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/AlgNbor.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)

===================================================================
File: AlgRecBisection.C	Status: Up-to-date

   Working revision:	1.7	Thu Jul 31 23:15:16 2003
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/AlgRecBisection.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.6)
	release-2-4-beta-2       	(revision: 1.6)
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)

===================================================================
File: AlgSeven.C       	Status: Up-to-date

   Working revision:	1.40	Thu Jul 31 23:15:16 2003
   Repository revision:	1.40	/Projects/namd2/cvsroot/namd2/src/AlgSeven.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.29)
	release-2-4              	(revision: 1.29)
	release-2-4-beta-2       	(revision: 1.29)
	release-2-4-beta-1       	(revision: 1.29)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.24)
	release-2-2              	(revision: 1.24)
	release-2-2-beta-3       	(revision: 1.24)
	release-2-2-beta-2       	(revision: 1.24)
	release-2-2-beta-1       	(revision: 1.24)
	release-2-1              	(revision: 1.16)
	release-2-1-beta-4       	(revision: 1.16)
	release-2-1-beta-3       	(revision: 1.16)
	release-2-1-beta-2       	(revision: 1.16)
	release-2-1-beta-1       	(revision: 1.15)
	release-2-0-pre-charm-syntax	(revision: 1.15)
	release-2-0              	(revision: 1.15)
	release-2-0-beta-3       	(revision: 1.14)
	release-2-0-beta-2       	(revision: 1.13)
	release-alpha-1          	(revision: 1.7)
	development-4            	(revision: 1.3)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1052	Thu Jul 31 23:15:16 2003
   Repository revision:	1.1052	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: FreeEnergyAssert.C	Status: Up-to-date

   Working revision:	1.4	Thu Jul 31 23:15:16 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/FreeEnergyAssert.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: FreeEnergyLambdMgr.C	Status: Up-to-date

   Working revision:	1.8	Thu Jul 31 23:15:16 2003
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/FreeEnergyLambdMgr.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.7)
	release-2-4              	(revision: 1.7)
	release-2-4-beta-2       	(revision: 1.7)
	release-2-4-beta-1       	(revision: 1.7)
	release-2-3              	(revision: 1.7)
	release-2-3-beta-2       	(revision: 1.7)
	release-2-3-beta-1       	(revision: 1.7)
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)

===================================================================
File: FreeEnergyLambda.C	Status: Up-to-date

   Working revision:	1.9	Thu Jul 31 23:15:16 2003
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/FreeEnergyLambda.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.8)
	release-2-4              	(revision: 1.8)
	release-2-4-beta-2       	(revision: 1.8)
	release-2-4-beta-1       	(revision: 1.8)
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: FreeEnergyVector.C	Status: Up-to-date

   Working revision:	1.5	Thu Jul 31 23:15:16 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/FreeEnergyVector.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: GlobalMasterFreeEnergy.C	Status: Up-to-date

   Working revision:	1.3	Thu Jul 31 23:15:16 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/GlobalMasterFreeEnergy.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)

===================================================================
File: ParseOptions.C   	Status: Up-to-date

   Working revision:	1.1019	Thu Jul 31 23:15:16 2003
   Repository revision:	1.1019	/Projects/namd2/cvsroot/namd2/src/ParseOptions.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1017)
	release-2-4              	(revision: 1.1017)
	release-2-4-beta-2       	(revision: 1.1017)
	release-2-4-beta-1       	(revision: 1.1017)
	release-2-3              	(revision: 1.1017)
	release-2-3-beta-2       	(revision: 1.1017)
	release-2-3-beta-1       	(revision: 1.1017)
	release-2-2              	(revision: 1.1016)
	release-2-2-beta-3       	(revision: 1.1016)
	release-2-2-beta-2       	(revision: 1.1016)
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1014)
	release-2-1-beta-1       	(revision: 1.1012)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1009)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.48	Thu Jul 31 23:15:16 2003
   Repository revision:	1.48	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.34)
	release-2-4              	(revision: 1.34)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1191	Thu Jul 31 23:15:16 2003
   Repository revision:	1.1191	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: UniqueSetIter.h  	Status: Up-to-date

   Working revision:	1.4	Thu Jul 31 23:15:16 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/UniqueSetIter.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Friday August 1, 19103 @ 13:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Linux-i686-g++.arch 
Added Files:
	Linux-amd64-g++.arch Linux-amd64.base 
Removed Files:
	Linux-i686-g++-opteron.arch 
Log Message:
Renamed Opteron file, added -DNO_STRSTREAM_H flag.


===================================================================
File: Linux-amd64-g++.arch	Status: Up-to-date

   Working revision:	1.1	Fri Aug  1 18:17:32 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-amd64-g++.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-amd64.base 	Status: Up-to-date

   Working revision:	1.1	Fri Aug  1 18:13:48 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-amd64.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-g++.arch	Status: Up-to-date

   Working revision:	1.8	Fri Aug  1 18:22:42 2003
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-g++.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: no file Linux-i686-g++-opteron.arch		Status: Up-to-date

   Working revision:	No entry for Linux-i686-g++-opteron.arch
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Attic/Linux-i686-g++-opteron.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday August 1, 19103 @ 13:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Controller.h InfoStream.h SimParameters.C 
Log Message:
Renamed Opteron file, added -DNO_STRSTREAM_H flag.


===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1053	Fri Aug  1 18:19:56 2003
   Repository revision:	1.1053	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1014	Fri Aug  1 18:20:27 2003
   Repository revision:	1.1014	/Projects/namd2/cvsroot/namd2/src/InfoStream.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1010)
	release-2-4              	(revision: 1.1010)
	release-2-4-beta-2       	(revision: 1.1010)
	release-2-4-beta-1       	(revision: 1.1010)
	release-2-3              	(revision: 1.1010)
	release-2-3-beta-2       	(revision: 1.1010)
	release-2-3-beta-1       	(revision: 1.1009)
	release-2-2              	(revision: 1.1008)
	release-2-2-beta-3       	(revision: 1.1008)
	release-2-2-beta-2       	(revision: 1.1008)
	release-2-2-beta-1       	(revision: 1.1008)
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1192	Fri Aug  1 18:20:40 2003
   Repository revision:	1.1192	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday August 3, 19103 @ 14:11
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv13126

Added Files:
	Linux-amd64.tcl Linux-amd64.fftw 
Log Message:
for amd64, compiled on opteron.


===================================================================
File: Linux-amd64.tcl  	Status: Up-to-date

   Working revision:	1.1	Sun Aug  3 19:11:58 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-amd64.tcl,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-amd64.fftw 	Status: Up-to-date

   Working revision:	1.1	Sun Aug  3 19:11:58 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-amd64.fftw,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday August 4, 19103 @ 9:59
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile 
Log Message:
2.5pre1 -> 2.5pre2


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1198	Mon Aug  4 14:59:09 2003
   Repository revision:	1.1198	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 4, 19103 @ 10:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Linux-i686-Scyld-icc.arch 
Log Message:
Make Scyld build static to run on ancient RedHat 6.2.


===================================================================
File: Linux-i686-Scyld-icc.arch	Status: Up-to-date

   Working revision:	1.4	Mon Aug  4 15:30:53 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Scyld-icc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Monday August 4, 19103 @ 15:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile 
Log Message:
Added commlib to win32, projections, and summary builds.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1199	Mon Aug  4 20:16:16 2003
   Repository revision:	1.1199	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 4, 19103 @ 16:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	AIX-RS6000.tcl CRAY-X1.tcl Cygwin-i686-MSVC.tcl 
	Cygwin-i686.tcl Darwin-PPC.tcl HPUX-PA2.0.tcl HPUX-ia64.tcl 
	HPUX.tcl IBM-SP.tcl Linux-Alpha.tcl Linux-i686.tcl 
	Linux-ia64.tcl Origin2000.tcl Solaris-Sparc.tcl 
	Solaris-i686.tcl T3E.tcl Tru64-Alpha.tcl Win32.tcl 
Log Message:
Added -DUSE_NON_CONST to work with Tcl 8.4.


===================================================================
File: AIX-RS6000.tcl   	Status: Up-to-date

   Working revision:	1.4	Mon Aug  4 21:23:56 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/AIX-RS6000.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)

===================================================================
File: CRAY-X1.tcl      	Status: Up-to-date

   Working revision:	1.2	Mon Aug  4 21:24:00 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/CRAY-X1.tcl,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Cygwin-i686-MSVC.tcl	Status: Up-to-date

   Working revision:	1.3	Mon Aug  4 21:24:03 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686-MSVC.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: Cygwin-i686.tcl  	Status: Up-to-date

   Working revision:	1.3	Mon Aug  4 21:24:07 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)

===================================================================
File: Darwin-PPC.tcl   	Status: Up-to-date

   Working revision:	1.3	Mon Aug  4 21:24:11 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Darwin-PPC.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: HPUX-PA2.0.tcl   	Status: Up-to-date

   Working revision:	1.3	Mon Aug  4 21:24:19 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/HPUX-PA2.0.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)

===================================================================
File: HPUX-ia64.tcl    	Status: Up-to-date

   Working revision:	1.2	Mon Aug  4 21:24:16 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/HPUX-ia64.tcl,v

   Existing Tags:
	No Tags Exist

===================================================================
File: HPUX.tcl         	Status: Up-to-date

   Working revision:	1.4	Mon Aug  4 21:24:22 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/HPUX.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: IBM-SP.tcl       	Status: Up-to-date

   Working revision:	1.3	Mon Aug  4 21:24:26 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/IBM-SP.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)

===================================================================
File: Linux-Alpha.tcl  	Status: Up-to-date

   Working revision:	1.4	Mon Aug  4 21:24:29 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Linux-Alpha.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)

===================================================================
File: Linux-i686.tcl   	Status: Up-to-date

   Working revision:	1.9	Mon Aug  4 21:24:32 2003
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.8)
	release-2-4              	(revision: 1.8)
	release-2-4-beta-2       	(revision: 1.8)
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Linux-ia64.tcl   	Status: Up-to-date

   Working revision:	1.3	Mon Aug  4 21:24:38 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: Origin2000.tcl   	Status: Up-to-date

   Working revision:	1.7	Mon Aug  4 21:24:41 2003
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Origin2000.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.6)
	release-2-4-beta-2       	(revision: 1.6)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Solaris-Sparc.tcl	Status: Up-to-date

   Working revision:	1.6	Mon Aug  4 21:24:48 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Solaris-i686.tcl 	Status: Up-to-date

   Working revision:	1.4	Mon Aug  4 21:24:44 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Solaris-i686.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)

===================================================================
File: T3E.tcl          	Status: Up-to-date

   Working revision:	1.4	Mon Aug  4 21:24:50 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/T3E.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Tru64-Alpha.tcl  	Status: Up-to-date

   Working revision:	1.5	Mon Aug  4 21:24:54 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Tru64-Alpha.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Win32.tcl        	Status: Up-to-date

   Working revision:	1.8	Mon Aug  4 21:25:06 2003
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/arch/Win32.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.7)
	release-2-4              	(revision: 1.7)
	release-2-4-beta-2       	(revision: 1.7)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday August 7, 19103 @ 10:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/ug

Modified Files:
	ug_runit.tex 
Log Message:
Fixed missing namd2 in command.


===================================================================
File: ug_runit.tex     	Status: Up-to-date

   Working revision:	1.6	Thu Aug  7 15:19:06 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/ug/ug_runit.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday August 7, 19103 @ 11:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Controller.C Controller.h 
Log Message:
Print average pressure tensors based on outputPressure config parameter.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1189	Thu Aug  7 15:56:03 2003
   Repository revision:	1.1189	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.h     	Status: Up-to-date

   Working revision:	1.1054	Thu Aug  7 15:42:32 2003
   Repository revision:	1.1054	/Projects/namd2/cvsroot/namd2/src/Controller.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1039)
	release-2-4-beta-2       	(revision: 1.1038)
	release-2-4-beta-1       	(revision: 1.1037)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1037)
	release-2-3-beta-1       	(revision: 1.1037)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1036)
	release-2-1              	(revision: 1.1032)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1025)
	release-2-0-pre-charm-syntax	(revision: 1.1020)
	release-2-0              	(revision: 1.1020)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1015)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday August 7, 19103 @ 15:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory cancun:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Controller.C 
Log Message:
Better error messages for xsc files.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1190	Thu Aug  7 20:08:53 2003
   Repository revision:	1.1190	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday August 7, 19103 @ 16:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Added Files:
	Win32-i686-SMP-MSVC.arch 
Log Message:
Added SMP build for Windows.


===================================================================
File: Win32-i686-SMP-MSVC.arch	Status: Up-to-date

   Working revision:	1.1	Thu Aug  7 21:13:07 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Win32-i686-SMP-MSVC.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday August 7, 19103 @ 16:51
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	ScriptTcl.C 
Log Message:
Do a better job of reading in rectangular unit cell data.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.50	Thu Aug  7 21:50:59 2003
   Repository revision:	1.50	/home/cvs/namd/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Thursday August 7, 19103 @ 18:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	InfoStream.C InfoStream.h main.C 
Log Message:
Print CHARM_VERSION macro, which just happens to be octal.


===================================================================
File: InfoStream.C     	Status: Up-to-date

   Working revision:	1.1009	Thu Aug  7 23:15:38 2003
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/InfoStream.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1006)
	release-2-4              	(revision: 1.1006)
	release-2-4-beta-2       	(revision: 1.1006)
	release-2-4-beta-1       	(revision: 1.1006)
	release-2-3              	(revision: 1.1006)
	release-2-3-beta-2       	(revision: 1.1006)
	release-2-3-beta-1       	(revision: 1.1006)
	release-2-2              	(revision: 1.1006)
	release-2-2-beta-3       	(revision: 1.1006)
	release-2-2-beta-2       	(revision: 1.1006)
	release-2-2-beta-1       	(revision: 1.1005)
	release-2-1              	(revision: 1.1004)
	release-2-1-beta-4       	(revision: 1.1004)
	release-2-1-beta-3       	(revision: 1.1004)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1015	Thu Aug  7 23:14:29 2003
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/InfoStream.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1010)
	release-2-4              	(revision: 1.1010)
	release-2-4-beta-2       	(revision: 1.1010)
	release-2-4-beta-1       	(revision: 1.1010)
	release-2-3              	(revision: 1.1010)
	release-2-3-beta-2       	(revision: 1.1010)
	release-2-3-beta-1       	(revision: 1.1009)
	release-2-2              	(revision: 1.1008)
	release-2-2-beta-3       	(revision: 1.1008)
	release-2-2-beta-2       	(revision: 1.1008)
	release-2-2-beta-1       	(revision: 1.1008)
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1049	Thu Aug  7 23:05:36 2003
   Repository revision:	1.1049	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1044)
	release-2-4              	(revision: 1.1044)
	release-2-4-beta-2       	(revision: 1.1044)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1044)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1040)
	release-2-2-beta-3       	(revision: 1.1040)
	release-2-2-beta-2       	(revision: 1.1040)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday August 7, 19103 @ 18:51
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	Output.C 
Log Message:
Write exactly 90.0 for angles in DCD file for orthogonal cells by using
90.0 + 180.0/pi * asin(-cos) rather than simply acos(cos).


===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.48	Thu Aug  7 23:41:56 2003
   Repository revision:	1.48	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.43)
	release-2-4              	(revision: 1.41)
	release-2-4-beta-2       	(revision: 1.41)
	release-2-4-beta-1       	(revision: 1.41)
	release-2-3              	(revision: 1.40)
	release-2-3-beta-2       	(revision: 1.40)
	release-2-3-beta-1       	(revision: 1.39)
	release-2-2              	(revision: 1.37)
	release-2-2-beta-3       	(revision: 1.37)
	release-2-2-beta-2       	(revision: 1.35)
	release-2-2-beta-1       	(revision: 1.35)
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)


****************************************
Date:	Thursday August 7, 19103 @ 19:38
Author:	justin

Update of /home/cvs/namd/cvsroot/namd2/src
In directory aberdeen.ks.uiuc.edu:/Projects/justin/namd2/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Disabled pressure profile for constant pressure until we can find the bug
that seems to be affecting the slabs on the edges of the unit cell.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1193	Fri Aug  8 00:34:10 2003
   Repository revision:	1.1193	/home/cvs/namd/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 8, 19103 @ 13:33
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	main.C 
Log Message:
Print CHARM_VERSION without using troublesome manipulators.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1050	Fri Aug  8 18:30:19 2003
   Repository revision:	1.1050	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1044)
	release-2-4              	(revision: 1.1044)
	release-2-4-beta-2       	(revision: 1.1044)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1044)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1040)
	release-2-2-beta-3       	(revision: 1.1040)
	release-2-2-beta-2       	(revision: 1.1040)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday August 8, 19103 @ 16:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Origin2000-CC.arch 
Log Message:
Switch memusage to use mallinfo rather than sbrk.


===================================================================
File: Origin2000-CC.arch	Status: Up-to-date

   Working revision:	1.5	Fri Aug  8 20:19:18 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Origin2000-CC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Friday August 8, 19103 @ 16:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	memusage.C memusage.h 
Log Message:
Switch memusage to use mallinfo rather than sbrk.


===================================================================
File: memusage.C       	Status: Up-to-date

   Working revision:	1.3	Fri Aug  8 21:32:18 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/memusage.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.1)

===================================================================
File: memusage.h       	Status: Up-to-date

   Working revision:	1.2	Fri Aug  8 20:30:11 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/memusage.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)


****************************************
Date:	Friday August 8, 19103 @ 17:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Darwin-PPC-c++.arch 
Log Message:
Don't use mallinfo on Mac.


===================================================================
File: Darwin-PPC-c++.arch	Status: Up-to-date

   Working revision:	1.5	Fri Aug  8 21:54:14 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Darwin-PPC-c++.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)


****************************************
Date:	Friday August 8, 19103 @ 17:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Solaris-Sparc-CC.arch 
Log Message:
Added -lmalloc to make mallinfo work.


===================================================================
File: Solaris-Sparc-CC.arch	Status: Up-to-date

   Working revision:	1.3	Fri Aug  8 22:44:36 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc-CC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Monday August 11, 19103 @ 13:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile 
Log Message:
Changed version to 2.5b2pre3.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1200	Mon Aug 11 18:23:38 2003
   Repository revision:	1.1200	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday August 20, 19103 @ 0:24
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv29139

Modified Files:
	NamdCentLB.C NamdNborLB.C 
Log Message:
updated to conform to the load balancing in new version of Charm++.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.47	Wed Aug 20 05:24:11 2003
   Repository revision:	1.47	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)

===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.15	Wed Aug 20 05:24:11 2003
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.13)
	release-2-4              	(revision: 1.13)
	release-2-4-beta-2       	(revision: 1.13)
	release-2-4-beta-1       	(revision: 1.12)


****************************************
Date:	Monday August 25, 19103 @ 16:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	config 
Log Message:
added -TCP flags to NAMD_PLATFORM and rewrote flag appending code


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.34	Mon Aug 25 21:13:41 2003
   Repository revision:	1.34	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.28)
	release-2-4              	(revision: 1.28)
	release-2-4-beta-2       	(revision: 1.28)
	release-2-4-beta-1       	(revision: 1.27)
	release-2-3              	(revision: 1.26)
	release-2-3-beta-2       	(revision: 1.26)
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Monday August 25, 19103 @ 16:24
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Linux-i686-Clustermatic-icc.arch Linux-i686-Scyld-icc.arch 
	Linux-i686-icc.arch 
Added Files:
	Linux-i686-Clustermatic-TCP-icc.arch 
	Linux-i686-Scyld-TCP-icc.arch Linux-i686-TCP-icc.arch 
Log Message:
Made TCP an explicit platform modifier.


===================================================================
File: Linux-i686-Clustermatic-TCP-icc.arch	Status: Up-to-date

   Working revision:	1.1	Mon Aug 25 21:16:51 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Clustermatic-TCP-icc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-Scyld-TCP-icc.arch	Status: Up-to-date

   Working revision:	1.1	Mon Aug 25 21:17:02 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Scyld-TCP-icc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-TCP-icc.arch	Status: Up-to-date

   Working revision:	1.1	Mon Aug 25 21:17:09 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-TCP-icc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-Clustermatic-icc.arch	Status: Up-to-date

   Working revision:	1.3	Wed Aug 13 18:45:23 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Clustermatic-icc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-Scyld-icc.arch	Status: Up-to-date

   Working revision:	1.5	Wed Aug 13 18:16:43 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Scyld-icc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: Linux-i686-icc.arch	Status: Up-to-date

   Working revision:	1.9	Mon Aug 25 20:59:39 2003
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-icc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Monday August 25, 19103 @ 18:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2

Modified Files:
	Makefile 
Log Message:
pre3 -> pre4


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1201	Mon Aug 25 23:16:58 2003
   Repository revision:	1.1201	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday August 25, 19103 @ 18:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/arch

Modified Files:
	Linux-i686-icc.arch 
Log Message:
Linux-i686 uses SMP by default (TCP version does not).


===================================================================
File: Linux-i686-icc.arch	Status: Up-to-date

   Working revision:	1.10	Mon Aug 25 23:21:58 2003
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-icc.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Wednesday August 27, 19103 @ 13:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv28668

Modified Files:
	memusage.C memusage.h 
Log Message:
Fallback to sbrk() if mallinfo says no memory in use.


===================================================================
File: memusage.C       	Status: Up-to-date

   Working revision:	1.4	Wed Aug 27 18:11:40 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/memusage.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.1)

===================================================================
File: memusage.h       	Status: Up-to-date

   Working revision:	1.3	Wed Aug 27 18:11:40 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/memusage.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)


****************************************
Date:	Sunday August 31, 19103 @ 17:56
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv823

Modified Files:
	NamdCentLB.C NamdNborLB.C 
Log Message:
LBMigrateMsg has been changed to varsize message in charm++. Update NAMD to use the right LBMigrateMsg constructor.


===================================================================
File: NamdCentLB.C     	Status: Up-to-date

   Working revision:	1.48	Sun Aug 31 22:56:49 2003
   Repository revision:	1.48	/Projects/namd2/cvsroot/namd2/src/NamdCentLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.26)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.26)
	release-2-4-beta-1       	(revision: 1.25)
	release-2-3              	(revision: 1.21)
	release-2-3-beta-2       	(revision: 1.21)
	release-2-3-beta-1       	(revision: 1.20)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.14)

===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.16	Sun Aug 31 22:56:49 2003
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.13)
	release-2-4              	(revision: 1.13)
	release-2-4-beta-2       	(revision: 1.13)
	release-2-4-beta-1       	(revision: 1.12)


****************************************
Date:	Tuesday September 2, 19103 @ 16:42
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp2/namd2/src

Modified Files:
	memusage.C 
Log Message:
Use _NO_MALLOC_H.


===================================================================
File: memusage.C       	Status: Up-to-date

   Working revision:	1.5	Tue Sep  2 21:41:11 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/memusage.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.1)


****************************************
Date:	Tuesday September 9, 19103 @ 14:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	Darwin-PPC-c++.arch 
Log Message:
Eliminate unused MEMUSAGE_USE_SBRK.


===================================================================
File: Darwin-PPC-c++.arch	Status: Up-to-date

   Working revision:	1.6	Tue Sep  9 19:42:00 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Darwin-PPC-c++.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)


****************************************
Date:	Tuesday September 9, 19103 @ 14:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	Origin2000-CC.arch 
Log Message:
Don't use mallinfo or link against -lmalloc (causes memory leak!)


===================================================================
File: Origin2000-CC.arch	Status: Up-to-date

   Working revision:	1.6	Tue Sep  9 19:49:10 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Origin2000-CC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Tuesday September 9, 19103 @ 15:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	memusage.C 
Log Message:
Bring back MEMUSAGE_USE_SBRK option.


===================================================================
File: memusage.C       	Status: Up-to-date

   Working revision:	1.6	Tue Sep  9 19:48:05 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/src/memusage.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.1)


****************************************
Date:	Tuesday September 9, 19103 @ 15:07
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	Solaris-Sparc-CC.arch 
Log Message:
Add -DMEMUSAGE_USE_SBRK and avoid -lmalloc


===================================================================
File: Solaris-Sparc-CC.arch	Status: Up-to-date

   Working revision:	1.4	Tue Sep  9 19:53:54 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc-CC.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Thursday September 11, 19103 @ 14:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/doc
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/psfgen/doc

Modified Files:
	ug_psfgen.tex 
Log Message:
Copied from plugins tree.


===================================================================
File: ug_psfgen.tex    	Status: Up-to-date

   Working revision:	1.5	Thu Sep 11 19:06:42 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/psfgen/doc/ug_psfgen.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday September 11, 19103 @ 14:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/psfgen/src

Modified Files:
	charmm_parse_topo_defs.c pdb_file_extract.c tcl_psfgen.c 
	topo_defs.c topo_mol.c topo_mol.h topo_mol_output.c 
	topo_mol_struct.h 
Log Message:
Copied from plugins tree.


===================================================================
File: charmm_parse_topo_defs.c	Status: Up-to-date

   Working revision:	1.2	Thu Sep 11 19:06:42 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/charmm_parse_topo_defs.c,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)

===================================================================
File: pdb_file_extract.c	Status: Up-to-date

   Working revision:	1.2	Thu Sep 11 19:06:43 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/psfgen/src/pdb_file_extract.c,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)

===================================================================
File: tcl_psfgen.c     	Status: Up-to-date

   Working revision:	1.7	Thu Sep 11 19:06:43 2003
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/psfgen/src/tcl_psfgen.c,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.2)

===================================================================
File: topo_defs.c      	Status: Up-to-date

   Working revision:	1.3	Thu Sep 11 19:06:43 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_defs.c,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)

===================================================================
File: topo_mol.c       	Status: Up-to-date

   Working revision:	1.5	Thu Sep 11 19:06:43 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol.c,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.2)

===================================================================
File: topo_mol.h       	Status: Up-to-date

   Working revision:	1.5	Thu Sep 11 19:06:43 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.2)

===================================================================
File: topo_mol_output.c	Status: Up-to-date

   Working revision:	1.4	Thu Sep 11 19:06:43 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol_output.c,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)

===================================================================
File: topo_mol_struct.h	Status: Up-to-date

   Working revision:	1.3	Thu Sep 11 19:06:43 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/psfgen/src/topo_mol_struct.h,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday September 11, 19103 @ 14:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	Makefile 
Log Message:
Fixed section -> subsection code.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.29	Thu Sep 11 19:20:30 2003
   Repository revision:	1.29	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.27)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.24)
	release-2-4-beta-1       	(revision: 1.21)
	release-2-3              	(revision: 1.20)
	release-2-3-beta-2       	(revision: 1.19)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Thursday September 11, 19103 @ 18:26
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	config notes.txt 
Log Message:
List platforms as two columns.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.35	Thu Sep 11 23:25:51 2003
   Repository revision:	1.35	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.28)
	release-2-4              	(revision: 1.28)
	release-2-4-beta-2       	(revision: 1.28)
	release-2-4-beta-1       	(revision: 1.27)
	release-2-3              	(revision: 1.26)
	release-2-3-beta-2       	(revision: 1.26)
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.38	Thu Sep 11 23:25:14 2003
   Repository revision:	1.38	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Thursday September 11, 19103 @ 18:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Added Files:
	MacOSX-PPC-c++.arch MacOSX-PPC.base MacOSX-PPC.fftw 
	MacOSX-PPC.plugins MacOSX-PPC.tcl 
Removed Files:
	Darwin-PPC-c++.arch Darwin-PPC.base Darwin-PPC.fftw 
	Darwin-PPC.plugins Darwin-PPC.tcl 
Log Message:
Changed Darwin to MacOSX.


===================================================================
File: MacOSX-PPC-c++.arch	Status: Up-to-date

   Working revision:	1.1	Thu Sep 11 23:30:48 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/MacOSX-PPC-c++.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: MacOSX-PPC.base  	Status: Up-to-date

   Working revision:	1.1	Fri Mar 30 02:59:14 2001
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/MacOSX-PPC.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: MacOSX-PPC.fftw  	Status: Up-to-date

   Working revision:	1.1	Fri Jul  5 20:28:27 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/MacOSX-PPC.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: MacOSX-PPC.plugins	Status: Up-to-date

   Working revision:	1.1	Tue Jun 11 22:27:23 2002
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/MacOSX-PPC.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: MacOSX-PPC.tcl   	Status: Up-to-date

   Working revision:	1.1	Tue Sep  9 19:33:08 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/MacOSX-PPC.tcl,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file Darwin-PPC-c++.arch		Status: Up-to-date

   Working revision:	No entry for Darwin-PPC-c++.arch
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/arch/Attic/Darwin-PPC-c++.arch,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)

===================================================================
File: no file Darwin-PPC.base		Status: Up-to-date

   Working revision:	No entry for Darwin-PPC.base
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Attic/Darwin-PPC.base,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: no file Darwin-PPC.fftw		Status: Up-to-date

   Working revision:	No entry for Darwin-PPC.fftw
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Attic/Darwin-PPC.fftw,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: no file Darwin-PPC.plugins		Status: Up-to-date

   Working revision:	No entry for Darwin-PPC.plugins
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Attic/Darwin-PPC.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: no file Darwin-PPC.tcl		Status: Up-to-date

   Working revision:	No entry for Darwin-PPC.tcl
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Attic/Darwin-PPC.tcl,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Thursday September 11, 19103 @ 19:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
Substantially reworked running and compiling instructions.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.38	Fri Sep 12 00:15:07 2003
   Repository revision:	1.38	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Thursday September 11, 19103 @ 19:31
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
Added memory usage limitation advice.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.39	Fri Sep 12 00:30:12 2003
   Repository revision:	1.39	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday September 12, 19103 @ 9:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
Added advice on improving parallel scaling.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.40	Fri Sep 12 14:48:06 2003
   Repository revision:	1.40	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday September 12, 19103 @ 10:25
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
New features.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.41	Fri Sep 12 15:25:29 2003
   Repository revision:	1.41	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday September 12, 19103 @ 10:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	announce.txt 
Log Message:
Updated with new features.


===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.24	Fri Sep 12 15:35:22 2003
   Repository revision:	1.24	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.21)
	release-2-4              	(revision: 1.20)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.18)
	release-2-3              	(revision: 1.17)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Friday September 12, 19103 @ 10:58
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
Added notes about building MPI versions.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.42	Fri Sep 12 15:57:39 2003
   Repository revision:	1.42	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday September 12, 19103 @ 11:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
Comments on Linux clusters.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.43	Fri Sep 12 16:17:40 2003
   Repository revision:	1.43	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday September 12, 19103 @ 13:14
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	Makefile namd_begindoc.tex namd_macros.tex ug.tex ug_avail.tex 
	ug_intro.tex ug_macros.tex ug_runit.tex ug_start.tex 
Log Message:
Copied in release notes, added index, various cleanups.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.30	Fri Sep 12 18:11:32 2003
   Repository revision:	1.30	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.27)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.24)
	release-2-4-beta-1       	(revision: 1.21)
	release-2-3              	(revision: 1.20)
	release-2-3-beta-2       	(revision: 1.19)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: namd_begindoc.tex	Status: Up-to-date

   Working revision:	1.2	Fri Sep 12 17:43:06 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/ug/namd_begindoc.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)
	release-2-1-beta-3       	(revision: 1.1)
	release-2-1-beta-2       	(revision: 1.1)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: namd_macros.tex  	Status: Up-to-date

   Working revision:	1.8	Fri Sep 12 17:43:16 2003
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/ug/namd_macros.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.6)
	release-2-4-beta-2       	(revision: 1.6)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ug.tex           	Status: Up-to-date

   Working revision:	1.9	Fri Sep 12 18:05:30 2003
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/ug/ug.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.8)
	release-2-4              	(revision: 1.8)
	release-2-4-beta-2       	(revision: 1.8)
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_avail.tex     	Status: Up-to-date

   Working revision:	1.8	Fri Sep 12 17:48:21 2003
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/ug/ug_avail.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.7)
	release-2-4              	(revision: 1.7)
	release-2-4-beta-2       	(revision: 1.7)
	release-2-4-beta-1       	(revision: 1.7)
	release-2-3              	(revision: 1.7)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)
	release-2-2-beta-1       	(revision: 1.4)
	release-2-1              	(revision: 1.4)
	release-2-1-beta-4       	(revision: 1.4)
	release-2-1-beta-3       	(revision: 1.4)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_intro.tex     	Status: Up-to-date

   Working revision:	1.20	Fri Sep 12 17:50:09 2003
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/ug/ug_intro.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.19)
	release-2-4              	(revision: 1.18)
	release-2-4-beta-2       	(revision: 1.18)
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.15)
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ug_macros.tex    	Status: Up-to-date

   Working revision:	1.5	Fri Sep 12 17:58:35 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/ug/ug_macros.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ug_runit.tex     	Status: Up-to-date

   Working revision:	1.7	Fri Sep 12 17:42:03 2003
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/ug/ug_runit.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.15	Fri Sep 12 17:54:05 2003
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.10)
	release-2-3-beta-2       	(revision: 1.10)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Friday September 12, 19103 @ 13:29
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	Makefile ug.tex ug_macros.tex 
Log Message:
Cleaned up index.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.31	Fri Sep 12 18:18:51 2003
   Repository revision:	1.31	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.27)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.24)
	release-2-4-beta-1       	(revision: 1.21)
	release-2-3              	(revision: 1.20)
	release-2-3-beta-2       	(revision: 1.19)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)

===================================================================
File: ug.tex           	Status: Up-to-date

   Working revision:	1.10	Fri Sep 12 18:27:05 2003
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/ug/ug.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.8)
	release-2-4              	(revision: 1.8)
	release-2-4-beta-2       	(revision: 1.8)
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

===================================================================
File: ug_macros.tex    	Status: Up-to-date

   Working revision:	1.6	Fri Sep 12 18:27:21 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/ug/ug_macros.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Friday September 12, 19103 @ 14:15
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_basic.tex 
Log Message:
New pairlist parameters.


===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.18	Fri Sep 12 19:12:57 2003
   Repository revision:	1.18	/Projects/namd2/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.16)
	release-2-4              	(revision: 1.16)
	release-2-4-beta-2       	(revision: 1.16)
	release-2-4-beta-1       	(revision: 1.16)
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.16)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.11)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday September 12, 19103 @ 14:41
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Small tweak.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.58	Fri Sep 12 19:40:47 2003
   Repository revision:	1.58	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday September 12, 19103 @ 15:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_macros.tex 
Log Message:
Small fix.


===================================================================
File: ug_macros.tex    	Status: Up-to-date

   Working revision:	1.7	Fri Sep 12 20:27:29 2003
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/ug/ug_macros.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Friday September 12, 19103 @ 15:31
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_basic.tex 
Log Message:
Pairlists, bad global exclusion count, and atoms moving too fast errors.


===================================================================
File: ug_basic.tex     	Status: Up-to-date

   Working revision:	1.19	Fri Sep 12 20:28:13 2003
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/ug/ug_basic.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.16)
	release-2-4              	(revision: 1.16)
	release-2-4-beta-2       	(revision: 1.16)
	release-2-4-beta-1       	(revision: 1.16)
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.16)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.11)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.9)
	release-2-0              	(revision: 1.9)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday September 12, 19103 @ 15:36
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Fixed missing spaces due to macros.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.59	Fri Sep 12 20:35:22 2003
   Repository revision:	1.59	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday September 12, 19103 @ 16:09
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	Makefile 
Log Message:
Fixed index again.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.32	Fri Sep 12 21:01:22 2003
   Repository revision:	1.32	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.27)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.24)
	release-2-4-beta-1       	(revision: 1.21)
	release-2-3              	(revision: 1.20)
	release-2-3-beta-2       	(revision: 1.19)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Friday September 12, 19103 @ 16:11
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_io.tex 
Log Message:
Added units.


===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.19	Fri Sep 12 21:09:43 2003
   Repository revision:	1.19	/Projects/namd2/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.16)
	release-2-4-beta-2       	(revision: 1.16)
	release-2-4-beta-1       	(revision: 1.16)
	release-2-3              	(revision: 1.15)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.12)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.12)
	release-2-1-beta-2       	(revision: 1.12)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Friday September 12, 19103 @ 16:13
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile 
Log Message:
Call it 2.5b2.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1202	Fri Sep 12 21:11:17 2003
   Repository revision:	1.1202	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Sunday September 14, 19103 @ 16:14
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv28976/src

Modified Files:
	LdbCoordinator.C 
Log Message:
for newer version, avoid directly accessing Charm++'s global variable "lbdb".
Due to some recent change in Charm++, for some reason, all charm++ global variable names are changed and labeled with a '_' at the beginning (_lbdb).


===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.71	Sun Sep 14 21:14:02 2003
   Repository revision:	1.71	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Monday September 15, 19103 @ 14:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_macros.tex 
Log Message:
Added "parameter" to automatically generated index entries.


===================================================================
File: ug_macros.tex    	Status: Up-to-date

   Working revision:	1.8	Mon Sep 15 19:44:43 2003
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/ug/ug_macros.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Monday September 15, 19103 @ 14:47
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_add.tex ug_io.tex 
Log Message:
More information on pressure calculations.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.60	Mon Sep 15 19:37:07 2003
   Repository revision:	1.60	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.20	Mon Sep 15 19:41:46 2003
   Repository revision:	1.20	/Projects/namd2/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.16)
	release-2-4-beta-2       	(revision: 1.16)
	release-2-4-beta-1       	(revision: 1.16)
	release-2-3              	(revision: 1.15)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.12)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.12)
	release-2-1-beta-2       	(revision: 1.12)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Monday September 15, 19103 @ 14:53
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
A little more constant pressure info.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.61	Mon Sep 15 19:53:07 2003
   Repository revision:	1.61	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Tuesday September 16, 19103 @ 17:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv14289

Modified Files:
	Molecule.C 
Log Message:
Change any zero or negative atom masses to 0.001.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1083	Tue Sep 16 22:48:14 2003
   Repository revision:	1.1083	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.1082)
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday September 16, 19103 @ 17:55
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/src
In directory philo.ks.uiuc.edu:/home/fzhu/namd/namd2/src

Modified Files:
	GlobalMasterTcl.C GlobalMasterTcl.h 
Log Message:
Implemented the "addenergy" Tcl command

===================================================================
File: GlobalMasterTcl.C	Status: Up-to-date

   Working revision:	1.12	Tue Sep 16 20:51:41 2003
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.C,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.11)
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)

===================================================================
File: GlobalMasterTcl.h	Status: Up-to-date

   Working revision:	1.5	Tue Sep 16 20:49:26 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.h,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.4)
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.3)
	release-2-4-beta-1       	(revision: 1.3)


****************************************
Date:	Tuesday September 16, 19103 @ 17:56
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/ug
In directory philo.ks.uiuc.edu:/home/fzhu/namd/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Implemented the "addenergy" Tcl command
Added user documentation for "addenergy"

===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.62	Tue Sep 16 22:49:45 2003
   Repository revision:	1.62	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.61)
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Tuesday September 16, 19103 @ 20:48
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
Mention arch/All-Unix.plugins too.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.44	Wed Sep 17 01:46:54 2003
   Repository revision:	1.44	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.43)
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Wednesday September 17, 19103 @ 10:55
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Yet another attempt to fix AMBER rigid waters.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1084	Wed Sep 17 01:25:43 2003
   Repository revision:	1.1084	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.1082)
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday September 17, 19103 @ 11:02
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/src
In directory philo.ks.uiuc.edu:/home/fzhu/namd/namd2/src

Modified Files:
	GlobalMasterTcl.C 
Log Message:
A correction for the implementation of "addenergy", so that it can appear
multiple times in calcforces{}.

===================================================================
File: GlobalMasterTcl.C	Status: Up-to-date

   Working revision:	1.13	Wed Sep 17 15:40:51 2003
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.C,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.11)
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)


****************************************
Date:	Wednesday September 17, 19103 @ 11:49
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	GlobalMasterTcl.C 
Log Message:
Eliminated if for reduction->submit().


===================================================================
File: GlobalMasterTcl.C	Status: Up-to-date

   Working revision:	1.14	Wed Sep 17 16:48:28 2003
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/GlobalMasterTcl.C,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.11)
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)


****************************************
Date:	Thursday September 18, 19103 @ 17:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Controller.C SimParameters.C SimParameters.h 
Log Message:
Patches from Chris Chipot and Jerome Henin.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1191	Thu Sep 18 22:00:32 2003
   Repository revision:	1.1191	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.1190)
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1194	Thu Sep 18 22:00:41 2003
   Repository revision:	1.1194	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.1193)
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1101	Thu Sep 18 22:00:49 2003
   Repository revision:	1.1101	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.1100)
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday September 18, 19103 @ 17:35
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug.bib ug_alchemy.tex 
Log Message:
Patches from Chris Chipot and Jerome Henin.


===================================================================
File: ug.bib           	Status: Up-to-date

   Working revision:	1.4	Thu Sep 18 22:35:08 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/ug/ug.bib,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.3)
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)
	release-2-1-beta-3       	(revision: 1.1)
	release-2-1-beta-2       	(revision: 1.1)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ug_alchemy.tex   	Status: Up-to-date

   Working revision:	1.6	Thu Sep 18 21:54:49 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/ug/ug_alchemy.tex,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.5)
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.4)


****************************************
Date:	Thursday September 18, 19103 @ 18:21
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
Suggest running megatest and more advice on reporting problems.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.45	Thu Sep 18 23:14:58 2003
   Repository revision:	1.45	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.43)
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Thursday September 18, 19103 @ 20:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile announce.txt notes.txt 
Log Message:
Bump version to 2.5b3.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1203	Fri Sep 19 01:01:38 2003
   Repository revision:	1.1203	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.1202)
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.25	Fri Sep 19 01:01:23 2003
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.24)
	release-2-5-beta-1       	(revision: 1.21)
	release-2-4              	(revision: 1.20)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.18)
	release-2-3              	(revision: 1.17)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.46	Fri Sep 19 01:01:32 2003
   Repository revision:	1.46	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.43)
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Thursday September 18, 19103 @ 20:02
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	Makefile 
Log Message:
Bump version to 2.5b3.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.33	Fri Sep 19 01:01:43 2003
   Repository revision:	1.33	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.32)
	release-2-5-beta-1       	(revision: 1.27)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.24)
	release-2-4-beta-1       	(revision: 1.21)
	release-2-3              	(revision: 1.20)
	release-2-3-beta-2       	(revision: 1.19)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Friday September 19, 19103 @ 14:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
Improved problem reporting instructions.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.47	Fri Sep 19 19:28:19 2003
   Repository revision:	1.47	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-2       	(revision: 1.43)
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Monday September 22, 19103 @ 11:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Eliminate repeated and unnecessary printing of:
Warning: FOUND 0 ATOMS WITH ZERO OR NEGATIVE MASSES!  CHANGED TO 0.001


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1085	Mon Sep 22 16:06:55 2003
   Repository revision:	1.1085	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.1084)
	release-2-5-beta-2       	(revision: 1.1082)
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday September 22, 19103 @ 16:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/tmp/cvs-serv7342

Modified Files:
	Controller.C 
Log Message:
Avoid FPE crash for super-minimized systems on some machines.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1192	Mon Sep 22 21:30:29 2003
   Repository revision:	1.1192	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.1191)
	release-2-5-beta-2       	(revision: 1.1190)
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday September 23, 19103 @ 14:52
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
<N> -> <steps>


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.48	Tue Sep 23 19:51:50 2003
   Repository revision:	1.48	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.47)
	release-2-5-beta-2       	(revision: 1.43)
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Tuesday September 23, 19103 @ 14:53
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_runit.tex 
Log Message:
<N> -> {\em steps}


===================================================================
File: ug_runit.tex     	Status: Up-to-date

   Working revision:	1.8	Tue Sep 23 19:48:40 2003
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/ug/ug_runit.tex,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.7)
	release-2-5-beta-2       	(revision: 1.7)
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Tuesday September 23, 19103 @ 15:23
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
Added paragraph on Myrinet options.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.49	Tue Sep 23 20:22:32 2003
   Repository revision:	1.49	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.47)
	release-2-5-beta-2       	(revision: 1.43)
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Tuesday September 23, 19103 @ 15:38
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_runit.tex 
Log Message:
15% -> 15\%


===================================================================
File: ug_runit.tex     	Status: Up-to-date

   Working revision:	1.9	Tue Sep 23 20:37:19 2003
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/ug/ug_runit.tex,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.7)
	release-2-5-beta-2       	(revision: 1.7)
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Tuesday September 23, 19103 @ 17:00
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	Win32.plugins 
Log Message:
Moved plugins out of jim subdirectory.


===================================================================
File: Win32.plugins    	Status: Up-to-date

   Working revision:	1.4	Tue Sep 23 21:59:50 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Win32.plugins,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.3)
	release-2-5-beta-2       	(revision: 1.3)


****************************************
Date:	Wednesday September 24, 19103 @ 11:32
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	T3E.plugins 
Log Message:
Disabled plugins on T3E since dcd reader is broken anyway.


===================================================================
File: T3E.plugins      	Status: Up-to-date

   Working revision:	1.2	Wed Sep 24 16:27:09 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/T3E.plugins,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)


****************************************
Date:	Wednesday September 24, 19103 @ 16:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/doc
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/psfgen/doc

Modified Files:
	ug_macros.tex ug_psfgen.tex 
Log Message:
Sync with psfgen 1.3.3 in plugins tree.  Change alias command to pdbalias.


===================================================================
File: ug_macros.tex    	Status: Up-to-date

   Working revision:	1.3	Wed Sep 24 21:27:58 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/psfgen/doc/ug_macros.tex,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.2)
	release-2-5-beta-2       	(revision: 1.2)
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)

===================================================================
File: ug_psfgen.tex    	Status: Up-to-date

   Working revision:	1.6	Wed Sep 24 21:27:58 2003
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/psfgen/doc/ug_psfgen.tex,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.5)
	release-2-5-beta-2       	(revision: 1.5)
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)


****************************************
Date:	Wednesday September 24, 19103 @ 16:40
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/psfgen/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/psfgen/src

Modified Files:
	tcl_psfgen.c 
Log Message:
Sync with psfgen 1.3.3 in plugins tree.  Change alias command to pdbalias.


===================================================================
File: tcl_psfgen.c     	Status: Up-to-date

   Working revision:	1.8	Wed Sep 24 21:27:58 2003
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/psfgen/src/tcl_psfgen.c,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.7)
	release-2-5-beta-2       	(revision: 1.7)
	release-2-5-beta-1       	(revision: 1.3)
	release-2-4              	(revision: 1.3)
	release-2-4-beta-2       	(revision: 1.2)


****************************************
Date:	Wednesday September 24, 19103 @ 16:40
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_macros.tex 
Log Message:
Sync with psfgen 1.3.3 in plugins tree.  Change alias command to pdbalias.


===================================================================
File: ug_macros.tex    	Status: Up-to-date

   Working revision:	1.9	Wed Sep 24 21:05:48 2003
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/ug/ug_macros.tex,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.8)
	release-2-5-beta-2       	(revision: 1.8)
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Wednesday September 24, 19103 @ 16:59
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_macros.tex ug_start.tex 
Log Message:
Add scripting commands to index.


===================================================================
File: ug_macros.tex    	Status: Up-to-date

   Working revision:	1.10	Wed Sep 24 21:49:50 2003
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/ug/ug_macros.tex,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.8)
	release-2-5-beta-2       	(revision: 1.8)
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.16	Wed Sep 24 21:55:42 2003
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.15)
	release-2-5-beta-2       	(revision: 1.15)
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.10)
	release-2-3-beta-2       	(revision: 1.10)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Thursday September 25, 19103 @ 17:08
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory hanoi:/tmp/cvs-serv4587

Added Files:
	Linux-ia64-MPI-GM-ecc.arch 
Log Message:
arch file for mpi-linux-ia64 with mpich-gm.


===================================================================
File: Linux-ia64-MPI-GM-ecc.arch	Status: Up-to-date

   Working revision:	1.1	Thu Sep 25 22:08:18 2003
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-MPI-GM-ecc.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday September 25, 19103 @ 18:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
Alternate method of making new MPICH-GM work.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.50	Thu Sep 25 22:22:30 2003
   Repository revision:	1.50	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.47)
	release-2-5-beta-2       	(revision: 1.43)
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday September 26, 19103 @ 14:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
New "gm" option for mpi-linux to use with MPICH-GM.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.51	Thu Sep 25 23:59:14 2003
   Repository revision:	1.51	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.47)
	release-2-5-beta-2       	(revision: 1.43)
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday September 26, 19103 @ 14:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
Additional options for Scyld/Clustermatic.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.52	Fri Sep 26 19:16:57 2003
   Repository revision:	1.52	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.47)
	release-2-5-beta-2       	(revision: 1.43)
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday September 26, 19103 @ 14:19
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_runit.tex 
Log Message:
Additional options for Scyld/Clustermatic.


===================================================================
File: ug_runit.tex     	Status: Up-to-date

   Working revision:	1.10	Fri Sep 26 19:16:49 2003
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/ug/ug_runit.tex,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.7)
	release-2-5-beta-2       	(revision: 1.7)
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.3)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.2)


****************************************
Date:	Friday September 26, 19103 @ 14:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	notes.txt 
Log Message:
Workaround for problems with net-linux-icc build.


===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.53	Fri Sep 26 19:35:09 2003
   Repository revision:	1.53	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.47)
	release-2-5-beta-2       	(revision: 1.43)
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday September 26, 19103 @ 14:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Makefile announce.txt notes.txt 
Log Message:
Bump version to 2.5.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1204	Fri Sep 26 19:42:47 2003
   Repository revision:	1.1204	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.1203)
	release-2-5-beta-2       	(revision: 1.1202)
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.26	Fri Sep 26 19:42:35 2003
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.25)
	release-2-5-beta-2       	(revision: 1.24)
	release-2-5-beta-1       	(revision: 1.21)
	release-2-4              	(revision: 1.20)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.18)
	release-2-3              	(revision: 1.17)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: notes.txt        	Status: Up-to-date

   Working revision:	1.54	Fri Sep 26 19:42:43 2003
   Repository revision:	1.54	/Projects/namd2/cvsroot/namd2/notes.txt,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.47)
	release-2-5-beta-2       	(revision: 1.43)
	release-2-5-beta-1       	(revision: 1.36)
	release-2-4              	(revision: 1.35)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.31)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.27)
	release-2-2              	(revision: 1.20)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.16)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.5)


****************************************
Date:	Friday September 26, 19103 @ 14:44
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	Makefile 
Log Message:
Bump version to 2.5.


===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.34	Fri Sep 26 19:42:50 2003
   Repository revision:	1.34	/Projects/namd2/cvsroot/namd2/ug/Makefile,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.33)
	release-2-5-beta-2       	(revision: 1.32)
	release-2-5-beta-1       	(revision: 1.27)
	release-2-4              	(revision: 1.26)
	release-2-4-beta-2       	(revision: 1.24)
	release-2-4-beta-1       	(revision: 1.21)
	release-2-3              	(revision: 1.20)
	release-2-3-beta-2       	(revision: 1.19)
	release-2-3-beta-1       	(revision: 1.18)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.10)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.10)
	release-2-1-beta-2       	(revision: 1.10)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.4)


****************************************
Date:	Friday September 26, 19103 @ 15:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	announce.txt 
Log Message:
Finish bumping version to 2.5.


===================================================================
File: announce.txt     	Status: Up-to-date

   Working revision:	1.27	Fri Sep 26 20:09:53 2003
   Repository revision:	1.27	/Projects/namd2/cvsroot/namd2/announce.txt,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.25)
	release-2-5-beta-2       	(revision: 1.24)
	release-2-5-beta-1       	(revision: 1.21)
	release-2-4              	(revision: 1.20)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.18)
	release-2-3              	(revision: 1.17)
	release-2-3-beta-2       	(revision: 1.15)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.9)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.4)
	release-2-1-beta-1       	(revision: 1.2)


****************************************
Date:	Friday September 26, 19103 @ 17:03
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ScriptTcl.C 
Log Message:
Put plugin headers in <> to keep out of Make.depends file.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.51	Fri Sep 26 21:50:47 2003
   Repository revision:	1.51	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.50)
	release-2-5-beta-2       	(revision: 1.50)
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)


****************************************
Date:	Friday September 26, 19103 @ 17:08
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Make.depends Makefile 
Log Message:
Sort objects, make depends.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.98	Fri Sep 26 22:04:24 2003
   Repository revision:	1.98	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.97)
	release-2-5-beta-2       	(revision: 1.97)
	release-2-5-beta-1       	(revision: 1.88)
	release-2-4              	(revision: 1.88)
	release-2-4-beta-2       	(revision: 1.88)
	release-2-4-beta-1       	(revision: 1.86)
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1205	Fri Sep 26 22:02:15 2003
   Repository revision:	1.1205	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5-beta-3       	(revision: 1.1203)
	release-2-5-beta-2       	(revision: 1.1202)
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday September 30, 19103 @ 14:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Measure.C 
Log Message:
Make centerOfMass and centerOfNumber return "x y z", not "{ x y z }".


===================================================================
File: Measure.C        	Status: Up-to-date

   Working revision:	1.8	Tue Sep 30 19:20:51 2003
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/Measure.C,v

   Existing Tags:
	release-2-5              	(revision: 1.7)
	release-2-5-beta-3       	(revision: 1.7)
	release-2-5-beta-2       	(revision: 1.7)
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.3)
	release-2-3              	(revision: 1.3)
	release-2-3-beta-2       	(revision: 1.3)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)


****************************************
Date:	Monday October 13, 19103 @ 14:40
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/src
In directory philo.ks.uiuc.edu:/home/fzhu/namd/namd2/src

Modified Files:
	GlobalMasterSMD.C 
Log Message:
Output the total number of SMD atoms, instead of their indices

===================================================================
File: GlobalMasterSMD.C	Status: Up-to-date

   Working revision:	1.2	Mon Oct 13 19:23:02 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/GlobalMasterSMD.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)


****************************************
Date:	Wednesday October 15, 19103 @ 15:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	WorkDistrib.C WorkDistrib.h 
Log Message:
Fixed bug where global forces (tcl, imd, tcl) fail to work if more than
64 processors are used and there are more patches than processors.


===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1139	Wed Oct 15 20:35:46 2003
   Repository revision:	1.1139	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1138)
	release-2-5-beta-3       	(revision: 1.1138)
	release-2-5-beta-2       	(revision: 1.1138)
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1031	Wed Oct 15 20:36:20 2003
   Repository revision:	1.1031	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1030)
	release-2-5-beta-3       	(revision: 1.1030)
	release-2-5-beta-2       	(revision: 1.1030)
	release-2-5-beta-1       	(revision: 1.1028)
	release-2-4              	(revision: 1.1028)
	release-2-4-beta-2       	(revision: 1.1028)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1023)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday October 15, 19103 @ 16:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeMgr.C WorkDistrib.C WorkDistrib.h 
Log Message:
Fixed bug the right way, using PatchMap::numNodesWithPatches().


===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1058	Wed Oct 15 20:56:51 2003
   Repository revision:	1.1058	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1057)
	release-2-5-beta-3       	(revision: 1.1057)
	release-2-5-beta-2       	(revision: 1.1057)
	release-2-5-beta-1       	(revision: 1.1049)
	release-2-4              	(revision: 1.1049)
	release-2-4-beta-2       	(revision: 1.1049)
	release-2-4-beta-1       	(revision: 1.1048)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.C    	Status: Up-to-date

   Working revision:	1.1140	Wed Oct 15 20:55:00 2003
   Repository revision:	1.1140	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1138)
	release-2-5-beta-3       	(revision: 1.1138)
	release-2-5-beta-2       	(revision: 1.1138)
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1116)
	release-2-4-beta-2       	(revision: 1.1115)
	release-2-4-beta-1       	(revision: 1.1112)
	release-2-3              	(revision: 1.1103)
	release-2-3-beta-2       	(revision: 1.1102)
	release-2-3-beta-1       	(revision: 1.1097)
	release-2-2              	(revision: 1.1093)
	release-2-2-beta-3       	(revision: 1.1092)
	release-2-2-beta-2       	(revision: 1.1092)
	release-2-2-beta-1       	(revision: 1.1092)
	release-2-1              	(revision: 1.1075)
	release-2-1-beta-4       	(revision: 1.1075)
	release-2-1-beta-3       	(revision: 1.1074)
	release-2-1-beta-2       	(revision: 1.1074)
	release-2-1-beta-1       	(revision: 1.1071)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1065)
	release-2-0-beta-2       	(revision: 1.1062)
	release-alpha-1          	(revision: 1.1036)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1005)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: WorkDistrib.h    	Status: Up-to-date

   Working revision:	1.1032	Wed Oct 15 20:55:57 2003
   Repository revision:	1.1032	/Projects/namd2/cvsroot/namd2/src/WorkDistrib.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1030)
	release-2-5-beta-3       	(revision: 1.1030)
	release-2-5-beta-2       	(revision: 1.1030)
	release-2-5-beta-1       	(revision: 1.1028)
	release-2-4              	(revision: 1.1028)
	release-2-4-beta-2       	(revision: 1.1028)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1025)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1024)
	release-2-2              	(revision: 1.1023)
	release-2-2-beta-3       	(revision: 1.1022)
	release-2-2-beta-2       	(revision: 1.1022)
	release-2-2-beta-1       	(revision: 1.1022)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1018)
	release-2-1-beta-1       	(revision: 1.1016)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1015)
	release-2-0-beta-3       	(revision: 1.1015)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1009)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday October 27, 19103 @ 10:28
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory verdun.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	CollectionMaster.C dcdlib.C 
Log Message:
Add _LARGE_FILE define for AIX.


===================================================================
File: CollectionMaster.C	Status: Up-to-date

   Working revision:	1.1033	Mon Oct 27 16:26:39 2003
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/CollectionMaster.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1032)
	release-2-5-beta-3       	(revision: 1.1032)
	release-2-5-beta-2       	(revision: 1.1032)
	release-2-5-beta-1       	(revision: 1.1029)
	release-2-4              	(revision: 1.1028)
	release-2-4-beta-2       	(revision: 1.1028)
	release-2-4-beta-1       	(revision: 1.1028)
	release-2-3              	(revision: 1.1028)
	release-2-3-beta-2       	(revision: 1.1025)
	release-2-3-beta-1       	(revision: 1.1025)
	release-2-2              	(revision: 1.1025)
	release-2-2-beta-3       	(revision: 1.1025)
	release-2-2-beta-2       	(revision: 1.1025)
	release-2-2-beta-1       	(revision: 1.1024)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1023)
	release-2-1-beta-1       	(revision: 1.1020)
	release-2-0-pre-charm-syntax	(revision: 1.1016)
	release-2-0              	(revision: 1.1016)
	release-2-0-beta-3       	(revision: 1.1016)
	release-2-0-beta-2       	(revision: 1.1014)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.29	Mon Oct 27 16:26:35 2003
   Repository revision:	1.29	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-5              	(revision: 1.28)
	release-2-5-beta-3       	(revision: 1.28)
	release-2-5-beta-2       	(revision: 1.28)
	release-2-5-beta-1       	(revision: 1.19)
	release-2-4              	(revision: 1.19)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.19)
	release-2-3              	(revision: 1.19)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Friday October 31, 19103 @ 0:51
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/src
In directory philo.ks.uiuc.edu:/home/fzhu/namd/namd2/src

Modified Files:
	GlobalMasterSMD.C 
Log Message:
Use internal indices (instead of atom numbers read from the PDB file) as the IDs of the SMD atoms.


===================================================================
File: GlobalMasterSMD.C	Status: Up-to-date

   Working revision:	1.3	Fri Oct 31 05:06:15 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/GlobalMasterSMD.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)


****************************************
Date:	Friday October 31, 19103 @ 0:51
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/ug
In directory philo.ks.uiuc.edu:/home/fzhu/namd/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Use internal indices (instead of atom numbers read from the PDB file) as the IDs of the SMD atoms.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.63	Fri Oct 31 06:37:02 2003
   Repository revision:	1.63	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5              	(revision: 1.62)
	release-2-5-beta-3       	(revision: 1.62)
	release-2-5-beta-2       	(revision: 1.61)
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday November 7, 19103 @ 10:53
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_io.tex 
Log Message:
Changed PDB ftp site to web site.


===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.21	Fri Nov  7 16:50:43 2003
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-5              	(revision: 1.20)
	release-2-5-beta-3       	(revision: 1.20)
	release-2-5-beta-2       	(revision: 1.20)
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.16)
	release-2-4-beta-2       	(revision: 1.16)
	release-2-4-beta-1       	(revision: 1.16)
	release-2-3              	(revision: 1.15)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.12)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.12)
	release-2-1-beta-2       	(revision: 1.12)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Wednesday November 12, 19103 @ 1:59
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory hanoi:/tmp/cvs-serv492

Modified Files:
	BackEnd.C LdbCoordinator.C 
Log Message:
moved print "Measuring processor speeds... Done." to the actual place when load balancer is created.


===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.21	Wed Nov 12 07:59:14 2003
   Repository revision:	1.21	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	release-2-5              	(revision: 1.20)
	release-2-5-beta-3       	(revision: 1.20)
	release-2-5-beta-2       	(revision: 1.20)
	release-2-5-beta-1       	(revision: 1.18)
	release-2-4              	(revision: 1.18)
	release-2-4-beta-2       	(revision: 1.18)
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.14)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)

===================================================================
File: LdbCoordinator.C 	Status: Up-to-date

   Working revision:	1.72	Wed Nov 12 07:59:15 2003
   Repository revision:	1.72	/Projects/namd2/cvsroot/namd2/src/LdbCoordinator.C,v

   Existing Tags:
	release-2-5              	(revision: 1.71)
	release-2-5-beta-3       	(revision: 1.71)
	release-2-5-beta-2       	(revision: 1.71)
	release-2-5-beta-1       	(revision: 1.55)
	release-2-4              	(revision: 1.55)
	release-2-4-beta-2       	(revision: 1.55)
	release-2-4-beta-1       	(revision: 1.55)
	release-2-3              	(revision: 1.49)
	release-2-3-beta-2       	(revision: 1.49)
	release-2-3-beta-1       	(revision: 1.49)
	release-2-2              	(revision: 1.49)
	release-2-2-beta-3       	(revision: 1.49)
	release-2-2-beta-2       	(revision: 1.49)
	release-2-2-beta-1       	(revision: 1.48)
	release-2-1              	(revision: 1.38)
	release-2-1-beta-4       	(revision: 1.38)
	release-2-1-beta-3       	(revision: 1.38)
	release-2-1-beta-2       	(revision: 1.38)
	release-2-1-beta-1       	(revision: 1.36)
	release-2-0-pre-charm-syntax	(revision: 1.35)
	release-2-0              	(revision: 1.35)
	release-2-0-beta-3       	(revision: 1.35)
	release-2-0-beta-2       	(revision: 1.32)
	release-alpha-1          	(revision: 1.24)
	development-4            	(revision: 1.16)


****************************************
Date:	Wednesday December 3, 19103 @ 16:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Changed advice for "fixedAtomsForces".


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.64	Wed Dec  3 22:15:51 2003
   Repository revision:	1.64	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5              	(revision: 1.62)
	release-2-5-beta-3       	(revision: 1.62)
	release-2-5-beta-2       	(revision: 1.61)
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Friday December 12, 19103 @ 17:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	SimParameters.C 
Log Message:
Update docs to reflect last of options for harmonic restraints.


===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1195	Fri Dec 12 23:30:37 2003
   Repository revision:	1.1195	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1194)
	release-2-5-beta-3       	(revision: 1.1194)
	release-2-5-beta-2       	(revision: 1.1193)
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday December 12, 19103 @ 17:39
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
Update docs to reflect last of options for harmonic restraints.


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.65	Fri Dec 12 23:33:48 2003
   Repository revision:	1.65	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5              	(revision: 1.62)
	release-2-5-beta-3       	(revision: 1.62)
	release-2-5-beta-2       	(revision: 1.61)
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Thursday December 18, 19103 @ 19:21
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory urbana:/tmp/cvs-serv13478

Modified Files:
	InfoStream.C DataStream.C 
Log Message:
explicitly cast file pos 0 to pos_type in seekp. This fixed the linking problem on the new Mac G5.


===================================================================
File: InfoStream.C     	Status: Up-to-date

   Working revision:	1.1009	Fri Dec 19 01:21:09 2003
   Repository revision:	1.1009	/Projects/namd2/cvsroot/namd2/src/InfoStream.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1008)
	release-2-5-beta-3       	(revision: 1.1008)
	release-2-5-beta-2       	(revision: 1.1008)
	release-2-5-beta-1       	(revision: 1.1006)
	release-2-4              	(revision: 1.1006)
	release-2-4-beta-2       	(revision: 1.1006)
	release-2-4-beta-1       	(revision: 1.1006)
	release-2-3              	(revision: 1.1006)
	release-2-3-beta-2       	(revision: 1.1006)
	release-2-3-beta-1       	(revision: 1.1006)
	release-2-2              	(revision: 1.1006)
	release-2-2-beta-3       	(revision: 1.1006)
	release-2-2-beta-2       	(revision: 1.1006)
	release-2-2-beta-1       	(revision: 1.1005)
	release-2-1              	(revision: 1.1004)
	release-2-1-beta-4       	(revision: 1.1004)
	release-2-1-beta-3       	(revision: 1.1004)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: DataStream.C     	Status: Up-to-date

   Working revision:	1.2	Fri Dec 19 01:21:09 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/DataStream.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)


****************************************
Date:	Thursday December 18, 19103 @ 19:22
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory urbana:/tmp/cvs-serv13539

Modified Files:
	MacOSX-PPC-c++.arch 
Log Message:
added compiler option -DNO_STRSTREAM_H for G5.


===================================================================
File: MacOSX-PPC-c++.arch	Status: Up-to-date

   Working revision:	1.2	Fri Dec 19 01:22:03 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/MacOSX-PPC-c++.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)


****************************************
Date:	Saturday December 20, 19103 @ 2:02
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory urbana:/tmp/cvs-serv714

Modified Files:
	DataStream.C InfoStream.C 
Log Message:
pos_type not defined on Windows, defined it to int type. (needed to cure Mac OS)


===================================================================
File: DataStream.C     	Status: Up-to-date

   Working revision:	1.3	Sat Dec 20 08:02:12 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/DataStream.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)

===================================================================
File: InfoStream.C     	Status: Up-to-date

   Working revision:	1.1010	Sat Dec 20 08:02:12 2003
   Repository revision:	1.1010	/Projects/namd2/cvsroot/namd2/src/InfoStream.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1008)
	release-2-5-beta-3       	(revision: 1.1008)
	release-2-5-beta-2       	(revision: 1.1008)
	release-2-5-beta-1       	(revision: 1.1006)
	release-2-4              	(revision: 1.1006)
	release-2-4-beta-2       	(revision: 1.1006)
	release-2-4-beta-1       	(revision: 1.1006)
	release-2-3              	(revision: 1.1006)
	release-2-3-beta-2       	(revision: 1.1006)
	release-2-3-beta-1       	(revision: 1.1006)
	release-2-2              	(revision: 1.1006)
	release-2-2-beta-3       	(revision: 1.1006)
	release-2-2-beta-2       	(revision: 1.1006)
	release-2-2-beta-1       	(revision: 1.1005)
	release-2-1              	(revision: 1.1004)
	release-2-1-beta-4       	(revision: 1.1004)
	release-2-1-beta-3       	(revision: 1.1004)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 24, 19103 @ 0:23
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory urbana:/tmp/cvs-serv4199

Modified Files:
	SimParameters.h 
Log Message:
all strings are now power of 2 instead of size 129, 257 or 57. This helps proper alignment of data.


===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1102	Wed Dec 24 06:23:29 2003
   Repository revision:	1.1102	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1101)
	release-2-5-beta-3       	(revision: 1.1101)
	release-2-5-beta-2       	(revision: 1.1100)
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 24, 19103 @ 0:53
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory urbana:/tmp/cvs-serv4261

Modified Files:
	Win32-i686-MSVC.arch 
Log Message:
assume 4 bytes alignment by default.


===================================================================
File: Win32-i686-MSVC.arch	Status: Up-to-date

   Working revision:	1.9	Wed Dec 24 06:53:31 2003
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/arch/Win32-i686-MSVC.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.8)
	release-2-5-beta-3       	(revision: 1.8)
	release-2-5-beta-2       	(revision: 1.8)
	release-2-5-beta-1       	(revision: 1.8)
	release-2-4              	(revision: 1.8)
	release-2-4-beta-2       	(revision: 1.8)
	release-2-4-beta-1       	(revision: 1.8)
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.4)
	release-2-2-beta-3       	(revision: 1.4)
	release-2-2-beta-2       	(revision: 1.4)


****************************************
Date:	Tuesday December 30, 19103 @ 15:52
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv2643

Modified Files:
	mainfunc.C 
Log Message:
when searching '\' for WIN32, also search for '/' in case it is under cygwin.


===================================================================
File: mainfunc.C       	Status: Up-to-date

   Working revision:	1.14	Tue Dec 30 21:52:51 2003
   Repository revision:	1.14	/Projects/namd2/cvsroot/namd2/src/mainfunc.C,v

   Existing Tags:
	release-2-5              	(revision: 1.13)
	release-2-5-beta-3       	(revision: 1.13)
	release-2-5-beta-2       	(revision: 1.13)
	release-2-5-beta-1       	(revision: 1.12)
	release-2-4              	(revision: 1.12)
	release-2-4-beta-2       	(revision: 1.12)
	release-2-4-beta-1       	(revision: 1.12)
	release-2-3              	(revision: 1.12)
	release-2-3-beta-2       	(revision: 1.12)
	release-2-3-beta-1       	(revision: 1.12)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.8)


****************************************
Date:	Tuesday December 30, 19103 @ 18:05
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv7799

Modified Files:
	Cygwin-i686.arch 
Log Message:
defined NO_STRSTREAM_H for cygwin gcc3.3.


===================================================================
File: Cygwin-i686.arch 	Status: Up-to-date

   Working revision:	1.5	Wed Dec 31 00:05:18 2003
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Cygwin-i686.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.4)
	release-2-5-beta-3       	(revision: 1.4)
	release-2-5-beta-2       	(revision: 1.4)
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.3)


****************************************
Date:	Wednesday December 31, 19103 @ 0:37
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv26692

Modified Files:
	UniqueSetRaw.h ResizeArrayRaw.h BackEnd.C ComputeMgr.h 
Log Message:
when NO_STRSTREAM_H defined, include <new> instead of <new.h>


===================================================================
File: UniqueSetRaw.h   	Status: Up-to-date

   Working revision:	1.8	Wed Dec 31 06:37:13 2003
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/UniqueSetRaw.h,v

   Existing Tags:
	release-2-5              	(revision: 1.7)
	release-2-5-beta-3       	(revision: 1.7)
	release-2-5-beta-2       	(revision: 1.7)
	release-2-5-beta-1       	(revision: 1.7)
	release-2-4              	(revision: 1.7)
	release-2-4-beta-2       	(revision: 1.7)
	release-2-4-beta-1       	(revision: 1.7)
	release-2-3              	(revision: 1.7)
	release-2-3-beta-2       	(revision: 1.7)
	release-2-3-beta-1       	(revision: 1.7)
	release-2-2              	(revision: 1.7)
	release-2-2-beta-3       	(revision: 1.7)
	release-2-2-beta-2       	(revision: 1.7)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)
	release-2-0-pre-charm-syntax	(revision: 1.2)
	release-2-0              	(revision: 1.2)
	release-2-0-beta-3       	(revision: 1.2)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: ResizeArrayRaw.h 	Status: Up-to-date

   Working revision:	1.16	Wed Dec 31 06:37:13 2003
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/ResizeArrayRaw.h,v

   Existing Tags:
	release-2-5              	(revision: 1.15)
	release-2-5-beta-3       	(revision: 1.15)
	release-2-5-beta-2       	(revision: 1.15)
	release-2-5-beta-1       	(revision: 1.14)
	release-2-4              	(revision: 1.14)
	release-2-4-beta-2       	(revision: 1.14)
	release-2-4-beta-1       	(revision: 1.14)
	release-2-3              	(revision: 1.14)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.11)
	release-2-2              	(revision: 1.11)
	release-2-2-beta-3       	(revision: 1.11)
	release-2-2-beta-2       	(revision: 1.11)
	release-2-2-beta-1       	(revision: 1.11)
	release-2-1              	(revision: 1.6)
	release-2-1-beta-4       	(revision: 1.6)
	release-2-1-beta-3       	(revision: 1.6)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.5)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)

===================================================================
File: BackEnd.C        	Status: Up-to-date

   Working revision:	1.22	Wed Dec 31 06:37:13 2003
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/src/BackEnd.C,v

   Existing Tags:
	release-2-5              	(revision: 1.20)
	release-2-5-beta-3       	(revision: 1.20)
	release-2-5-beta-2       	(revision: 1.20)
	release-2-5-beta-1       	(revision: 1.18)
	release-2-4              	(revision: 1.18)
	release-2-4-beta-2       	(revision: 1.18)
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.14)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.14)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.11)

===================================================================
File: ComputeMgr.h     	Status: Up-to-date

   Working revision:	1.1026	Wed Dec 31 06:37:13 2003
   Repository revision:	1.1026	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1025)
	release-2-5-beta-3       	(revision: 1.1025)
	release-2-5-beta-2       	(revision: 1.1025)
	release-2-5-beta-1       	(revision: 1.1023)
	release-2-4              	(revision: 1.1023)
	release-2-4-beta-2       	(revision: 1.1023)
	release-2-4-beta-1       	(revision: 1.1023)
	release-2-3              	(revision: 1.1021)
	release-2-3-beta-2       	(revision: 1.1021)
	release-2-3-beta-1       	(revision: 1.1021)
	release-2-2              	(revision: 1.1020)
	release-2-2-beta-3       	(revision: 1.1020)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1019)
	release-2-1-beta-4       	(revision: 1.1019)
	release-2-1-beta-3       	(revision: 1.1019)
	release-2-1-beta-2       	(revision: 1.1019)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1014)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1013)
	release-2-0-beta-2       	(revision: 1.1013)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1008)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 31, 19103 @ 1:56
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv191

Modified Files:
	FreeEnergyGroup.C 
Log Message:
include <iostream> and <iomanip> when NO_STRSTREAM_H  is defined.


===================================================================
File: FreeEnergyGroup.C	Status: Up-to-date

   Working revision:	1.3	Wed Dec 31 07:56:51 2003
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/src/FreeEnergyGroup.C,v

   Existing Tags:
	release-2-5              	(revision: 1.2)
	release-2-5-beta-3       	(revision: 1.2)
	release-2-5-beta-2       	(revision: 1.2)
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.2)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Wednesday December 31, 19103 @ 2:19
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv1063

Modified Files:
	ConfigList.h ConfigList.C 
Log Message:
implemented with C++ standard library ostringstream whenever possible.


===================================================================
File: ConfigList.h     	Status: Up-to-date

   Working revision:	1.1007	Wed Dec 31 08:19:32 2003
   Repository revision:	1.1007	/Projects/namd2/cvsroot/namd2/src/ConfigList.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1006)
	release-2-5-beta-3       	(revision: 1.1006)
	release-2-5-beta-2       	(revision: 1.1006)
	release-2-5-beta-1       	(revision: 1.1006)
	release-2-4              	(revision: 1.1006)
	release-2-4-beta-2       	(revision: 1.1006)
	release-2-4-beta-1       	(revision: 1.1006)
	release-2-3              	(revision: 1.1006)
	release-2-3-beta-2       	(revision: 1.1006)
	release-2-3-beta-1       	(revision: 1.1006)
	release-2-2              	(revision: 1.1006)
	release-2-2-beta-3       	(revision: 1.1006)
	release-2-2-beta-2       	(revision: 1.1006)
	release-2-2-beta-1       	(revision: 1.1006)
	release-2-1              	(revision: 1.1005)
	release-2-1-beta-4       	(revision: 1.1005)
	release-2-1-beta-3       	(revision: 1.1005)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ConfigList.C     	Status: Up-to-date

   Working revision:	1.1020	Wed Dec 31 08:19:33 2003
   Repository revision:	1.1020	/Projects/namd2/cvsroot/namd2/src/ConfigList.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1019)
	release-2-5-beta-3       	(revision: 1.1019)
	release-2-5-beta-2       	(revision: 1.1019)
	release-2-5-beta-1       	(revision: 1.1018)
	release-2-4              	(revision: 1.1018)
	release-2-4-beta-2       	(revision: 1.1018)
	release-2-4-beta-1       	(revision: 1.1018)
	release-2-3              	(revision: 1.1017)
	release-2-3-beta-2       	(revision: 1.1017)
	release-2-3-beta-1       	(revision: 1.1017)
	release-2-2              	(revision: 1.1016)
	release-2-2-beta-3       	(revision: 1.1016)
	release-2-2-beta-2       	(revision: 1.1016)
	release-2-2-beta-1       	(revision: 1.1016)
	release-2-1              	(revision: 1.1015)
	release-2-1-beta-4       	(revision: 1.1014)
	release-2-1-beta-3       	(revision: 1.1014)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1009)
	release-2-0              	(revision: 1.1008)
	release-2-0-beta-3       	(revision: 1.1008)
	release-2-0-beta-2       	(revision: 1.1007)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 31, 19103 @ 2:23
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv1301

Modified Files:
	InfoStream.h InfoStream.C 
Log Message:
implemented with standard C++ ostringstream class in <sstream>.


===================================================================
File: InfoStream.h     	Status: Up-to-date

   Working revision:	1.1015	Wed Dec 31 08:23:22 2003
   Repository revision:	1.1015	/Projects/namd2/cvsroot/namd2/src/InfoStream.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1014)
	release-2-5-beta-3       	(revision: 1.1014)
	release-2-5-beta-2       	(revision: 1.1014)
	release-2-5-beta-1       	(revision: 1.1010)
	release-2-4              	(revision: 1.1010)
	release-2-4-beta-2       	(revision: 1.1010)
	release-2-4-beta-1       	(revision: 1.1010)
	release-2-3              	(revision: 1.1010)
	release-2-3-beta-2       	(revision: 1.1010)
	release-2-3-beta-1       	(revision: 1.1009)
	release-2-2              	(revision: 1.1008)
	release-2-2-beta-3       	(revision: 1.1008)
	release-2-2-beta-2       	(revision: 1.1008)
	release-2-2-beta-1       	(revision: 1.1008)
	release-2-1              	(revision: 1.1006)
	release-2-1-beta-4       	(revision: 1.1006)
	release-2-1-beta-3       	(revision: 1.1006)
	release-2-1-beta-2       	(revision: 1.1006)
	release-2-1-beta-1       	(revision: 1.1004)
	release-2-0-pre-charm-syntax	(revision: 1.1003)
	release-2-0              	(revision: 1.1003)
	release-2-0-beta-3       	(revision: 1.1003)
	release-2-0-beta-2       	(revision: 1.1003)
	release-alpha-1          	(revision: 1.1002)
	development-4            	(revision: 1.1002)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: InfoStream.C     	Status: Up-to-date

   Working revision:	1.1011	Wed Dec 31 08:23:22 2003
   Repository revision:	1.1011	/Projects/namd2/cvsroot/namd2/src/InfoStream.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1008)
	release-2-5-beta-3       	(revision: 1.1008)
	release-2-5-beta-2       	(revision: 1.1008)
	release-2-5-beta-1       	(revision: 1.1006)
	release-2-4              	(revision: 1.1006)
	release-2-4-beta-2       	(revision: 1.1006)
	release-2-4-beta-1       	(revision: 1.1006)
	release-2-3              	(revision: 1.1006)
	release-2-3-beta-2       	(revision: 1.1006)
	release-2-3-beta-1       	(revision: 1.1006)
	release-2-2              	(revision: 1.1006)
	release-2-2-beta-3       	(revision: 1.1006)
	release-2-2-beta-2       	(revision: 1.1006)
	release-2-2-beta-1       	(revision: 1.1005)
	release-2-1              	(revision: 1.1004)
	release-2-1-beta-4       	(revision: 1.1004)
	release-2-1-beta-3       	(revision: 1.1004)
	release-2-1-beta-2       	(revision: 1.1004)
	release-2-1-beta-1       	(revision: 1.1002)
	release-2-0-pre-charm-syntax	(revision: 1.1001)
	release-2-0              	(revision: 1.1001)
	release-2-0-beta-3       	(revision: 1.1001)
	release-2-0-beta-2       	(revision: 1.1001)
	release-alpha-1          	(revision: 1.1001)
	development-4            	(revision: 1.1001)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 31, 19103 @ 2:26
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv1487

Modified Files:
	DataStream.h DataStream.C 
Log Message:
implemented with standard C++ ostringstream class in <sstream>.


===================================================================
File: DataStream.h     	Status: Up-to-date

   Working revision:	1.2	Wed Dec 31 08:26:03 2003
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/DataStream.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)

===================================================================
File: DataStream.C     	Status: Up-to-date

   Working revision:	1.4	Wed Dec 31 08:26:03 2003
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/DataStream.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)


****************************************
Date:	Wednesday December 31, 19103 @ 2:28
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv1616

Modified Files:
	Controller.C 
Log Message:
use standard ostringstream whenever possible.


===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1193	Wed Dec 31 08:28:10 2003
   Repository revision:	1.1193	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1192)
	release-2-5-beta-3       	(revision: 1.1191)
	release-2-5-beta-2       	(revision: 1.1190)
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 31, 19103 @ 22:21
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv21698

Modified Files:
	heap.C Set.C 
Log Message:
use <iostream> whenever possible. This removed all deprecation warning messages.


===================================================================
File: heap.C           	Status: Up-to-date

   Working revision:	1.7	Thu Jan  1 04:21:24 2004
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/heap.C,v

   Existing Tags:
	release-2-5              	(revision: 1.6)
	release-2-5-beta-3       	(revision: 1.6)
	release-2-5-beta-2       	(revision: 1.6)
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.6)
	release-2-4-beta-2       	(revision: 1.6)
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.4)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.2)

===================================================================
File: Set.C            	Status: Up-to-date

   Working revision:	1.9	Thu Jan  1 04:21:24 2004
   Repository revision:	1.9	/Projects/namd2/cvsroot/namd2/src/Set.C,v

   Existing Tags:
	release-2-5              	(revision: 1.8)
	release-2-5-beta-3       	(revision: 1.8)
	release-2-5-beta-2       	(revision: 1.8)
	release-2-5-beta-1       	(revision: 1.8)
	release-2-4              	(revision: 1.8)
	release-2-4-beta-2       	(revision: 1.8)
	release-2-4-beta-1       	(revision: 1.8)
	release-2-3              	(revision: 1.8)
	release-2-3-beta-2       	(revision: 1.8)
	release-2-3-beta-1       	(revision: 1.8)
	release-2-2              	(revision: 1.8)
	release-2-2-beta-3       	(revision: 1.8)
	release-2-2-beta-2       	(revision: 1.8)
	release-2-2-beta-1       	(revision: 1.7)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.6)
	release-2-0-beta-3       	(revision: 1.6)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.6)
	development-4            	(revision: 1.5)


****************************************
Date:	Wednesday December 31, 19103 @ 22:54
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv22810

Modified Files:
	PmeKSpace.h PmeKSpace.C PatchMap.C PatchMap.h 
Log Message:
workaround for Intel C++ v8.0 compiler on RH9.0. It crashed due to its improper handling of passing big "Lattice" in function parameters.
The workaround is to pass Lattice by const reference. This is good anyway since it optimizes the code a little bit by avoiding copying on stack.


===================================================================
File: PmeKSpace.h      	Status: Up-to-date

   Working revision:	1.7	Thu Jan  1 04:54:24 2004
   Repository revision:	1.7	/Projects/namd2/cvsroot/namd2/src/PmeKSpace.h,v

   Existing Tags:
	release-2-5              	(revision: 1.6)
	release-2-5-beta-3       	(revision: 1.6)
	release-2-5-beta-2       	(revision: 1.6)
	release-2-5-beta-1       	(revision: 1.5)
	release-2-4              	(revision: 1.5)
	release-2-4-beta-2       	(revision: 1.5)
	release-2-4-beta-1       	(revision: 1.5)
	release-2-3              	(revision: 1.5)
	release-2-3-beta-2       	(revision: 1.5)
	release-2-3-beta-1       	(revision: 1.5)
	release-2-2              	(revision: 1.5)
	release-2-2-beta-3       	(revision: 1.5)
	release-2-2-beta-2       	(revision: 1.5)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PmeKSpace.C      	Status: Up-to-date

   Working revision:	1.8	Thu Jan  1 04:54:25 2004
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/PmeKSpace.C,v

   Existing Tags:
	release-2-5              	(revision: 1.7)
	release-2-5-beta-3       	(revision: 1.7)
	release-2-5-beta-2       	(revision: 1.7)
	release-2-5-beta-1       	(revision: 1.6)
	release-2-4              	(revision: 1.6)
	release-2-4-beta-2       	(revision: 1.6)
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.6)
	release-2-1              	(revision: 1.3)
	release-2-1-beta-4       	(revision: 1.3)
	release-2-1-beta-3       	(revision: 1.3)
	release-2-1-beta-2       	(revision: 1.3)
	release-2-1-beta-1       	(revision: 1.2)

===================================================================
File: PatchMap.C       	Status: Up-to-date

   Working revision:	1.1034	Thu Jan  1 04:54:26 2004
   Repository revision:	1.1034	/Projects/namd2/cvsroot/namd2/src/PatchMap.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1033)
	release-2-5-beta-3       	(revision: 1.1033)
	release-2-5-beta-2       	(revision: 1.1033)
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1030)
	release-2-3              	(revision: 1.1030)
	release-2-3-beta-2       	(revision: 1.1030)
	release-2-3-beta-1       	(revision: 1.1030)
	release-2-2              	(revision: 1.1028)
	release-2-2-beta-3       	(revision: 1.1028)
	release-2-2-beta-2       	(revision: 1.1028)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1024)
	release-2-1-beta-4       	(revision: 1.1024)
	release-2-1-beta-3       	(revision: 1.1024)
	release-2-1-beta-2       	(revision: 1.1024)
	release-2-1-beta-1       	(revision: 1.1022)
	release-2-0-pre-charm-syntax	(revision: 1.1019)
	release-2-0              	(revision: 1.1019)
	release-2-0-beta-3       	(revision: 1.1019)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: PatchMap.h       	Status: Up-to-date

   Working revision:	1.1022	Thu Jan  1 04:54:26 2004
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/PatchMap.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1021)
	release-2-5-beta-3       	(revision: 1.1021)
	release-2-5-beta-2       	(revision: 1.1021)
	release-2-5-beta-1       	(revision: 1.1019)
	release-2-4              	(revision: 1.1019)
	release-2-4-beta-2       	(revision: 1.1019)
	release-2-4-beta-1       	(revision: 1.1019)
	release-2-3              	(revision: 1.1019)
	release-2-3-beta-2       	(revision: 1.1019)
	release-2-3-beta-1       	(revision: 1.1018)
	release-2-2              	(revision: 1.1018)
	release-2-2-beta-3       	(revision: 1.1018)
	release-2-2-beta-2       	(revision: 1.1018)
	release-2-2-beta-1       	(revision: 1.1018)
	release-2-1              	(revision: 1.1016)
	release-2-1-beta-4       	(revision: 1.1016)
	release-2-1-beta-3       	(revision: 1.1016)
	release-2-1-beta-2       	(revision: 1.1016)
	release-2-1-beta-1       	(revision: 1.1014)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1007)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday December 31, 19103 @ 23:28
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv24046

Modified Files:
	Linux-i686-icc.arch 
Log Message:
define -DNO_STRSTREAM_H to use modern standard C++ class.


===================================================================
File: Linux-i686-icc.arch	Status: Up-to-date

   Working revision:	1.10	Thu Jan  1 05:28:00 2004
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-icc.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.9)
	release-2-5-beta-3       	(revision: 1.9)
	release-2-5-beta-2       	(revision: 1.9)
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Tuesday January 13, 19104 @ 20:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_io.tex 
Log Message:
Add CHARMM27 parameter files to list.


===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.22	Wed Jan 14 02:29:57 2004
   Repository revision:	1.22	/Projects/namd2/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-5              	(revision: 1.20)
	release-2-5-beta-3       	(revision: 1.20)
	release-2-5-beta-2       	(revision: 1.20)
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.16)
	release-2-4-beta-2       	(revision: 1.16)
	release-2-4-beta-1       	(revision: 1.16)
	release-2-3              	(revision: 1.15)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.12)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.12)
	release-2-1-beta-2       	(revision: 1.12)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Friday January 16, 19104 @ 1:18
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv8673

Modified Files:
	Molecule.C 
Log Message:
rediculous workaround for buggy aCC compiler on HP ia64:
if ( all_exclusions[a1].max < a2 ) all_exclusions[a1].max = a2;
does not pass, changing to
if ( a2 > all_exclusions[a1].max ) all_exclusions[a1].max = a2;
works!?


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1086	Fri Jan 16 07:18:18 2004
   Repository revision:	1.1086	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1085)
	release-2-5-beta-3       	(revision: 1.1084)
	release-2-5-beta-2       	(revision: 1.1082)
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday January 19, 19104 @ 12:31
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/ug
In directory philo.ks.uiuc.edu:/home/fzhu/namd/namd2/ug

Modified Files:
	ug_io.tex 
Log Message:
Since the problem with rigid AMBER waters is fixed, this "caveat" is removed
from the user guide.


===================================================================
File: ug_io.tex        	Status: Up-to-date

   Working revision:	1.23	Mon Jan 19 18:22:02 2004
   Repository revision:	1.23	/Projects/namd2/cvsroot/namd2/ug/ug_io.tex,v

   Existing Tags:
	release-2-5              	(revision: 1.20)
	release-2-5-beta-3       	(revision: 1.20)
	release-2-5-beta-2       	(revision: 1.20)
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.16)
	release-2-4-beta-2       	(revision: 1.16)
	release-2-4-beta-1       	(revision: 1.16)
	release-2-3              	(revision: 1.15)
	release-2-3-beta-2       	(revision: 1.14)
	release-2-3-beta-1       	(revision: 1.12)
	release-2-2              	(revision: 1.12)
	release-2-2-beta-3       	(revision: 1.12)
	release-2-2-beta-2       	(revision: 1.12)
	release-2-2-beta-1       	(revision: 1.12)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.12)
	release-2-1-beta-2       	(revision: 1.12)
	release-2-1-beta-1       	(revision: 1.11)
	release-2-0-pre-charm-syntax	(revision: 1.11)
	release-2-0              	(revision: 1.11)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.3)


****************************************
Date:	Tuesday January 20, 19104 @ 18:01
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	Molecule.C 
Log Message:
Fixed bug for molecular hydrogen.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1087	Tue Jan 20 23:35:06 2004
   Repository revision:	1.1087	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1085)
	release-2-5-beta-3       	(revision: 1.1084)
	release-2-5-beta-2       	(revision: 1.1082)
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Wednesday February 4, 19104 @ 14:07
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv9763

Modified Files:
	FreeEnergyGroup.C 
Log Message:
replace a cout by CkPrintf because setw crashed xlc compiler on Mac os with xlC!


===================================================================
File: FreeEnergyGroup.C	Status: Up-to-date

   Working revision:	1.4	Wed Feb  4 20:07:56 2004
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/FreeEnergyGroup.C,v

   Existing Tags:
	release-2-5              	(revision: 1.2)
	release-2-5-beta-3       	(revision: 1.2)
	release-2-5-beta-2       	(revision: 1.2)
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.2)
	release-2-2              	(revision: 1.2)
	release-2-2-beta-3       	(revision: 1.2)
	release-2-2-beta-2       	(revision: 1.2)
	release-2-2-beta-1       	(revision: 1.2)
	release-2-1              	(revision: 1.2)
	release-2-1-beta-4       	(revision: 1.2)
	release-2-1-beta-3       	(revision: 1.2)
	release-2-1-beta-2       	(revision: 1.2)
	release-2-1-beta-1       	(revision: 1.1)
	release-2-0-pre-charm-syntax	(revision: 1.1)
	release-2-0              	(revision: 1.1)
	release-2-0-beta-3       	(revision: 1.1)
	release-2-0-beta-2       	(revision: 1.1)


****************************************
Date:	Wednesday February 4, 19104 @ 14:38
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv15238

Added Files:
	MacOSX-PPC-xlC.arch 
Log Message:
config for xlC on mac os with -O3.


===================================================================
File: MacOSX-PPC-xlC.arch	Status: Up-to-date

   Working revision:	1.1	Wed Feb  4 20:38:25 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/MacOSX-PPC-xlC.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Tuesday February 10, 19104 @ 11:34
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv23128

Added Files:
	BlueGeneL-MPI-g++.arch BlueGeneL-MPI-xlC.arch BlueGeneL.base 
	BlueGeneL.fftw 
Log Message:
config files for real BlueGene/L.


===================================================================
File: BlueGeneL-MPI-g++.arch	Status: Up-to-date

   Working revision:	1.1	Tue Feb 10 17:34:20 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/BlueGeneL-MPI-g++.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BlueGeneL-MPI-xlC.arch	Status: Up-to-date

   Working revision:	1.1	Tue Feb 10 17:34:20 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/BlueGeneL-MPI-xlC.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BlueGeneL.base   	Status: Up-to-date

   Working revision:	1.1	Tue Feb 10 17:34:20 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/BlueGeneL.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BlueGeneL.fftw   	Status: Up-to-date

   Working revision:	1.1	Tue Feb 10 17:34:20 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/BlueGeneL.fftw,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 11, 19104 @ 17:21
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv10037

Modified Files:
	BlueGeneL-MPI-g++.arch BlueGeneL-MPI-xlC.arch 
Log Message:
minor changes in flags.


===================================================================
File: BlueGeneL-MPI-g++.arch	Status: Up-to-date

   Working revision:	1.2	Wed Feb 11 23:21:29 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/BlueGeneL-MPI-g++.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: BlueGeneL-MPI-xlC.arch	Status: Up-to-date

   Working revision:	1.2	Wed Feb 11 23:21:29 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/BlueGeneL-MPI-xlC.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Wednesday February 11, 19104 @ 17:27
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv11982

Modified Files:
	dcdlib.C 
Log Message:
when NO_GETPWUID is defined, skip getpwid call because it may not be available for example on bg/l.


===================================================================
File: dcdlib.C         	Status: Up-to-date

   Working revision:	1.30	Wed Feb 11 23:27:51 2004
   Repository revision:	1.30	/Projects/namd2/cvsroot/namd2/src/dcdlib.C,v

   Existing Tags:
	release-2-5              	(revision: 1.28)
	release-2-5-beta-3       	(revision: 1.28)
	release-2-5-beta-2       	(revision: 1.28)
	release-2-5-beta-1       	(revision: 1.19)
	release-2-4              	(revision: 1.19)
	release-2-4-beta-2       	(revision: 1.19)
	release-2-4-beta-1       	(revision: 1.19)
	release-2-3              	(revision: 1.19)
	release-2-3-beta-2       	(revision: 1.18)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.16)
	release-2-2-beta-3       	(revision: 1.16)
	release-2-2-beta-2       	(revision: 1.14)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.13)
	release-2-1-beta-4       	(revision: 1.13)
	release-2-1-beta-3       	(revision: 1.13)
	release-2-1-beta-2       	(revision: 1.11)
	release-2-1-beta-1       	(revision: 1.9)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.7)
	release-2-0-beta-2       	(revision: 1.6)
	release-alpha-1          	(revision: 1.3)
	development-4            	(revision: 1.2)
	development-3            	(revision: 1.1)


****************************************
Date:	Wednesday February 11, 19104 @ 17:34
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv14029

Modified Files:
	main.C 
Log Message:
skip socket code when NO_SOCKET is defined for example on bg/l


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1051	Wed Feb 11 23:34:07 2004
   Repository revision:	1.1051	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1050)
	release-2-5-beta-3       	(revision: 1.1050)
	release-2-5-beta-2       	(revision: 1.1050)
	release-2-5-beta-1       	(revision: 1.1044)
	release-2-4              	(revision: 1.1044)
	release-2-4-beta-2       	(revision: 1.1044)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1044)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1040)
	release-2-2-beta-3       	(revision: 1.1040)
	release-2-2-beta-2       	(revision: 1.1040)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 13, 19104 @ 9:29
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv19111

Modified Files:
	mainfunc.C 
Log Message:
turn off chdir on bg/l.


===================================================================
File: mainfunc.C       	Status: Up-to-date

   Working revision:	1.15	Fri Feb 13 15:29:44 2004
   Repository revision:	1.15	/Projects/namd2/cvsroot/namd2/src/mainfunc.C,v

   Existing Tags:
	release-2-5              	(revision: 1.13)
	release-2-5-beta-3       	(revision: 1.13)
	release-2-5-beta-2       	(revision: 1.13)
	release-2-5-beta-1       	(revision: 1.12)
	release-2-4              	(revision: 1.12)
	release-2-4-beta-2       	(revision: 1.12)
	release-2-4-beta-1       	(revision: 1.12)
	release-2-3              	(revision: 1.12)
	release-2-3-beta-2       	(revision: 1.12)
	release-2-3-beta-1       	(revision: 1.12)
	release-2-2              	(revision: 1.10)
	release-2-2-beta-3       	(revision: 1.10)
	release-2-2-beta-2       	(revision: 1.10)
	release-2-2-beta-1       	(revision: 1.8)


****************************************
Date:	Friday February 13, 19104 @ 17:06
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/ug

Modified Files:
	ug_add.tex 
Log Message:
pressureProfileOn -> pressureProfile


===================================================================
File: ug_add.tex       	Status: Up-to-date

   Working revision:	1.66	Fri Feb 13 23:06:29 2004
   Repository revision:	1.66	/Projects/namd2/cvsroot/namd2/ug/ug_add.tex,v

   Existing Tags:
	release-2-5              	(revision: 1.62)
	release-2-5-beta-3       	(revision: 1.62)
	release-2-5-beta-2       	(revision: 1.61)
	release-2-5-beta-1       	(revision: 1.39)
	release-2-4              	(revision: 1.38)
	release-2-4-beta-2       	(revision: 1.36)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.32)
	release-2-3-beta-2       	(revision: 1.31)
	release-2-3-beta-1       	(revision: 1.28)
	release-2-2              	(revision: 1.26)
	release-2-2-beta-3       	(revision: 1.25)
	release-2-2-beta-2       	(revision: 1.25)
	release-2-2-beta-1       	(revision: 1.25)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.21)
	release-2-1-beta-3       	(revision: 1.21)
	release-2-1-beta-2       	(revision: 1.21)
	release-2-1-beta-1       	(revision: 1.19)
	release-2-0-pre-charm-syntax	(revision: 1.19)
	release-2-0              	(revision: 1.19)
	release-2-0-beta-3       	(revision: 1.11)
	release-2-0-beta-2       	(revision: 1.5)


****************************************
Date:	Sunday February 15, 19104 @ 17:32
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv20154

Added Files:
	Linux-i686-CMPI-icc.arch 
Log Message:
config file for cmpi on Tungsten.


===================================================================
File: Linux-i686-CMPI-icc.arch	Status: Up-to-date

   Working revision:	1.1	Sun Feb 15 23:32:14 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-CMPI-icc.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday February 19, 19104 @ 21:54
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	main.C 
Log Message:
Deal with switching CHARM_VERSION from octal to decimal.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1052	Fri Feb 20 03:35:43 2004
   Repository revision:	1.1052	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1050)
	release-2-5-beta-3       	(revision: 1.1050)
	release-2-5-beta-2       	(revision: 1.1050)
	release-2-5-beta-1       	(revision: 1.1044)
	release-2-4              	(revision: 1.1044)
	release-2-4-beta-2       	(revision: 1.1044)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1044)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1040)
	release-2-2-beta-3       	(revision: 1.1040)
	release-2-2-beta-2       	(revision: 1.1040)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 20, 19104 @ 15:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Make.charm Makefile 
Log Message:
Tweaks for charm-5.8 and new platforms.


===================================================================
File: Make.charm       	Status: Up-to-date

   Working revision:	1.13	Fri Feb 20 21:00:06 2004
   Repository revision:	1.13	/Projects/namd2/cvsroot/namd2/Make.charm,v

   Existing Tags:
	release-2-5              	(revision: 1.12)
	release-2-5-beta-3       	(revision: 1.12)
	release-2-5-beta-2       	(revision: 1.12)
	release-2-5-beta-1       	(revision: 1.10)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.10)
	release-2-3-beta-2       	(revision: 1.10)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.6)
	release-2-2-beta-3       	(revision: 1.6)
	release-2-2-beta-2       	(revision: 1.6)
	release-2-2-beta-1       	(revision: 1.5)
	release-2-1              	(revision: 1.5)
	release-2-1-beta-4       	(revision: 1.5)
	release-2-1-beta-3       	(revision: 1.5)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.5)
	release-2-0-pre-charm-syntax	(revision: 1.3)
	release-2-0              	(revision: 1.3)
	release-2-0-beta-3       	(revision: 1.3)
	release-2-0-beta-2       	(revision: 1.1)

===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1206	Fri Feb 20 20:52:21 2004
   Repository revision:	1.1206	/Projects/namd2/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5              	(revision: 1.1205)
	release-2-5-beta-3       	(revision: 1.1203)
	release-2-5-beta-2       	(revision: 1.1202)
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Friday February 20, 19104 @ 15:34
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	Linux-i686-icc.arch Linux-ia64-MPI-GM-ecc.arch 
Added Files:
	Linux-i686-MPI-icc.arch 
Log Message:
Tweaks for charm-5.8 and new platforms.


===================================================================
File: Linux-i686-MPI-icc.arch	Status: Up-to-date

   Working revision:	1.1	Fri Feb 20 20:59:30 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-MPI-icc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-icc.arch	Status: Up-to-date

   Working revision:	1.11	Fri Feb 20 21:01:32 2004
   Repository revision:	1.11	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-icc.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.9)
	release-2-5-beta-3       	(revision: 1.9)
	release-2-5-beta-2       	(revision: 1.9)
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: Linux-ia64-MPI-GM-ecc.arch	Status: Up-to-date

   Working revision:	1.2	Fri Feb 20 20:55:55 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64-MPI-GM-ecc.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.1)


****************************************
Date:	Friday February 20, 19104 @ 16:38
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/arch

Modified Files:
	Linux-amd64-g++.arch Linux-amd64.fftw Linux-amd64.tcl 
	Linux-i686.fftw Linux-i686.tcl Linux-ia64.fftw 
Added Files:
	Linux-amd64.plugins 
Log Message:
All features for amd64; tcl-linux -> tcl; fftw-linux -> fftw.


===================================================================
File: Linux-amd64.plugins	Status: Up-to-date

   Working revision:	1.1	Fri Feb 20 21:36:27 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-amd64.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-amd64-g++.arch	Status: Up-to-date

   Working revision:	1.2	Fri Feb 20 21:52:21 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-amd64-g++.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)

===================================================================
File: Linux-amd64.fftw 	Status: Up-to-date

   Working revision:	1.2	Fri Feb 20 21:37:57 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-amd64.fftw,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)

===================================================================
File: Linux-amd64.tcl  	Status: Up-to-date

   Working revision:	1.2	Fri Feb 20 21:38:28 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-amd64.tcl,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)

===================================================================
File: Linux-i686.fftw  	Status: Up-to-date

   Working revision:	1.6	Fri Feb 20 21:37:52 2004
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.fftw,v

   Existing Tags:
	release-2-5              	(revision: 1.5)
	release-2-5-beta-3       	(revision: 1.5)
	release-2-5-beta-2       	(revision: 1.5)
	release-2-5-beta-1       	(revision: 1.4)
	release-2-4              	(revision: 1.4)
	release-2-4-beta-2       	(revision: 1.4)
	release-2-4-beta-1       	(revision: 1.4)
	release-2-3              	(revision: 1.4)
	release-2-3-beta-2       	(revision: 1.4)
	release-2-3-beta-1       	(revision: 1.4)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Linux-i686.tcl   	Status: Up-to-date

   Working revision:	1.10	Fri Feb 20 21:38:46 2004
   Repository revision:	1.10	/Projects/namd2/cvsroot/namd2/arch/Linux-i686.tcl,v

   Existing Tags:
	release-2-5              	(revision: 1.9)
	release-2-5-beta-3       	(revision: 1.9)
	release-2-5-beta-2       	(revision: 1.9)
	release-2-5-beta-1       	(revision: 1.8)
	release-2-4              	(revision: 1.8)
	release-2-4-beta-2       	(revision: 1.8)
	release-2-4-beta-1       	(revision: 1.6)
	release-2-3              	(revision: 1.6)
	release-2-3-beta-2       	(revision: 1.6)
	release-2-3-beta-1       	(revision: 1.6)
	release-2-2              	(revision: 1.3)
	release-2-2-beta-3       	(revision: 1.3)
	release-2-2-beta-2       	(revision: 1.3)
	release-2-2-beta-1       	(revision: 1.3)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)

===================================================================
File: Linux-ia64.fftw  	Status: Up-to-date

   Working revision:	1.3	Fri Feb 20 21:40:19 2004
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-ia64.fftw,v

   Existing Tags:
	release-2-5              	(revision: 1.2)
	release-2-5-beta-3       	(revision: 1.2)
	release-2-5-beta-2       	(revision: 1.2)
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)


****************************************
Date:	Wednesday February 25, 19104 @ 16:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2

Modified Files:
	Make.depends 
Log Message:
Added ReserveArray class to manage overflow arrays.


===================================================================
File: Make.depends     	Status: Up-to-date

   Working revision:	1.99	Wed Feb 25 21:47:10 2004
   Repository revision:	1.99	/Projects/namd2/cvsroot/namd2/Make.depends,v

   Existing Tags:
	release-2-5              	(revision: 1.98)
	release-2-5-beta-3       	(revision: 1.97)
	release-2-5-beta-2       	(revision: 1.97)
	release-2-5-beta-1       	(revision: 1.88)
	release-2-4              	(revision: 1.88)
	release-2-4-beta-2       	(revision: 1.88)
	release-2-4-beta-1       	(revision: 1.86)
	release-2-3              	(revision: 1.82)
	release-2-3-beta-2       	(revision: 1.80)
	release-2-3-beta-1       	(revision: 1.75)
	release-2-2              	(revision: 1.73)
	release-2-2-beta-3       	(revision: 1.73)
	release-2-2-beta-2       	(revision: 1.73)
	release-2-2-beta-1       	(revision: 1.71)
	release-2-1              	(revision: 1.48)
	release-2-1-beta-4       	(revision: 1.48)
	release-2-1-beta-3       	(revision: 1.48)
	release-2-1-beta-2       	(revision: 1.46)
	release-2-1-beta-1       	(revision: 1.40)
	release-2-0-pre-charm-syntax	(revision: 1.24)
	release-2-0              	(revision: 1.23)
	release-2-0-beta-3       	(revision: 1.23)
	release-2-0-beta-2       	(revision: 1.22)
	release-alpha-1          	(revision: 1.5)


****************************************
Date:	Wednesday February 25, 19104 @ 16:10
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp4/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedInl.h 
Added Files:
	ReserveArray.h 
Log Message:
Added ReserveArray class to manage overflow arrays.


===================================================================
File: ReserveArray.h   	Status: Up-to-date

   Working revision:	1.1	Wed Feb 25 21:11:03 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/src/ReserveArray.h,v

   Existing Tags:
	No Tags Exist

===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1104	Wed Feb 25 21:19:35 2004
   Repository revision:	1.1104	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1103)
	release-2-5-beta-3       	(revision: 1.1103)
	release-2-5-beta-2       	(revision: 1.1103)
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedInl.h	Status: Up-to-date

   Working revision:	1.2	Wed Feb 25 21:27:12 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedInl.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)


****************************************
Date:	Tuesday March 2, 19104 @ 17:04
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp5/namd2/arch

Added Files:
	Linux-i686-Clustermatic4-icc.arch 
	Linux-i686-Clustermatic4-TCP-icc.arch 
Log Message:
Distinguish Clustermatic versions.


===================================================================
File: Linux-i686-Clustermatic4-icc.arch	Status: Up-to-date

   Working revision:	1.1	Tue Mar  2 23:03:48 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Clustermatic4-icc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-Clustermatic4-TCP-icc.arch	Status: Up-to-date

   Working revision:	1.1	Tue Mar  2 23:03:53 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Clustermatic4-TCP-icc.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday March 5, 19104 @ 11:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp5/namd2

Modified Files:
	config 
Log Message:
Fixed NAMD_PLATFORM bug, added NAMD_SUBARCH variable.


===================================================================
File: config           	Status: Up-to-date

   Working revision:	1.36	Fri Mar  5 17:02:07 2004
   Repository revision:	1.36	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-5              	(revision: 1.35)
	release-2-5-beta-3       	(revision: 1.35)
	release-2-5-beta-2       	(revision: 1.35)
	release-2-5-beta-1       	(revision: 1.28)
	release-2-4              	(revision: 1.28)
	release-2-4-beta-2       	(revision: 1.28)
	release-2-4-beta-1       	(revision: 1.27)
	release-2-3              	(revision: 1.26)
	release-2-3-beta-2       	(revision: 1.26)
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Friday March 5, 19104 @ 11:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp5/namd2/arch

Modified Files:
	Linux-i686-Clustermatic4-icc.arch 
	Linux-i686-Clustermatic4-TCP-icc.arch 
Added Files:
	Linux-i686-redhat9.base Linux-i686-redhat9.fftw 
	Linux-i686-redhat9.plugins Linux-i686-redhat9.tcl 
Log Message:
Fixed NAMD_PLATFORM bug, added NAMD_SUBARCH variable.


===================================================================
File: Linux-i686-redhat9.base	Status: Up-to-date

   Working revision:	1.1	Thu Mar  4 20:45:38 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-redhat9.base,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-redhat9.fftw	Status: Up-to-date

   Working revision:	1.1	Thu Mar  4 20:46:09 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-redhat9.fftw,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-redhat9.plugins	Status: Up-to-date

   Working revision:	1.1	Thu Mar  4 20:47:10 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-redhat9.plugins,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-redhat9.tcl	Status: Up-to-date

   Working revision:	1.1	Thu Mar  4 20:46:27 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-redhat9.tcl,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-Clustermatic4-icc.arch	Status: Up-to-date

   Working revision:	1.2	Fri Mar  5 17:02:43 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Clustermatic4-icc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-Clustermatic4-TCP-icc.arch	Status: Up-to-date

   Working revision:	1.2	Thu Mar  4 19:51:28 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Clustermatic4-TCP-icc.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Friday March 5, 19104 @ 15:30
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp5/namd2/arch

Modified Files:
	Linux-i686-MPI-icc.arch 
Log Message:
"nclude" -> "include"


===================================================================
File: Linux-i686-MPI-icc.arch	Status: Up-to-date

   Working revision:	1.2	Fri Mar  5 21:29:17 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-MPI-icc.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Monday March 8, 19104 @ 16:40
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory cancun:/Projects/namd2/Programmers/jim/tmp5/namd2/arch

Modified Files:
	Solaris-Sparc-CC.arch 
Log Message:
-native -> -xarch=native


===================================================================
File: Solaris-Sparc-CC.arch	Status: Up-to-date

   Working revision:	1.5	Mon Mar  8 22:36:28 2004
   Repository revision:	1.5	/Projects/namd2/cvsroot/namd2/arch/Solaris-Sparc-CC.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.4)
	release-2-5-beta-3       	(revision: 1.4)
	release-2-5-beta-2       	(revision: 1.4)
	release-2-5-beta-1       	(revision: 1.2)
	release-2-4              	(revision: 1.2)
	release-2-4-beta-2       	(revision: 1.2)
	release-2-4-beta-1       	(revision: 1.2)
	release-2-3              	(revision: 1.2)
	release-2-3-beta-2       	(revision: 1.2)
	release-2-3-beta-1       	(revision: 1.1)
	release-2-2              	(revision: 1.1)
	release-2-2-beta-3       	(revision: 1.1)
	release-2-2-beta-2       	(revision: 1.1)
	release-2-2-beta-1       	(revision: 1.1)
	release-2-1              	(revision: 1.1)
	release-2-1-beta-4       	(revision: 1.1)


****************************************
Date:	Wednesday March 10, 19104 @ 15:38
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/arch
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp5/namd2/arch

Modified Files:
	Linux-i686-Clustermatic4-icc.arch 
	Linux-i686-Clustermatic4-TCP-icc.arch 
	Linux-i686-Clustermatic-icc.arch 
	Linux-i686-Clustermatic-TCP-icc.arch Linux-i686-GM-icc.arch 
	Linux-i686-icc.arch Linux-i686-Scyld-icc.arch 
	Linux-i686-Scyld-TCP-icc.arch Linux-i686-SMP-icc.arch 
	Linux-i686-TCP-icc.arch Linux-i686-VMI-icc.arch 
Log Message:
Eliminated charm hack, must change icc -> iccstatic in CHARMARCH


===================================================================
File: Linux-i686-Clustermatic4-icc.arch	Status: Up-to-date

   Working revision:	1.3	Wed Mar 10 21:35:28 2004
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Clustermatic4-icc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-Clustermatic4-TCP-icc.arch	Status: Up-to-date

   Working revision:	1.3	Wed Mar 10 21:35:31 2004
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Clustermatic4-TCP-icc.arch,v

   Existing Tags:
	No Tags Exist

===================================================================
File: Linux-i686-Clustermatic-icc.arch	Status: Up-to-date

   Working revision:	1.4	Wed Mar 10 21:35:37 2004
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Clustermatic-icc.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.3)
	release-2-5-beta-3       	(revision: 1.3)
	release-2-5-beta-2       	(revision: 1.3)

===================================================================
File: Linux-i686-Clustermatic-TCP-icc.arch	Status: Up-to-date

   Working revision:	1.2	Wed Mar 10 21:35:40 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Clustermatic-TCP-icc.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)

===================================================================
File: Linux-i686-GM-icc.arch	Status: Up-to-date

   Working revision:	1.3	Wed Mar 10 21:35:46 2004
   Repository revision:	1.3	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-GM-icc.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.2)
	release-2-5-beta-3       	(revision: 1.2)
	release-2-5-beta-2       	(revision: 1.2)

===================================================================
File: Linux-i686-icc.arch	Status: Up-to-date

   Working revision:	1.12	Wed Mar 10 21:35:51 2004
   Repository revision:	1.12	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-icc.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.9)
	release-2-5-beta-3       	(revision: 1.9)
	release-2-5-beta-2       	(revision: 1.9)
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: Linux-i686-Scyld-icc.arch	Status: Up-to-date

   Working revision:	1.6	Wed Mar 10 21:35:59 2004
   Repository revision:	1.6	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Scyld-icc.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.5)
	release-2-5-beta-3       	(revision: 1.5)
	release-2-5-beta-2       	(revision: 1.5)
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)
	release-2-3              	(revision: 1.1)
	release-2-3-beta-2       	(revision: 1.1)

===================================================================
File: Linux-i686-Scyld-TCP-icc.arch	Status: Up-to-date

   Working revision:	1.2	Wed Mar 10 21:36:02 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-Scyld-TCP-icc.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)

===================================================================
File: Linux-i686-SMP-icc.arch	Status: Up-to-date

   Working revision:	1.2	Wed Mar 10 21:36:05 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-SMP-icc.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)

===================================================================
File: Linux-i686-TCP-icc.arch	Status: Up-to-date

   Working revision:	1.2	Wed Mar 10 21:36:09 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-TCP-icc.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)

===================================================================
File: Linux-i686-VMI-icc.arch	Status: Up-to-date

   Working revision:	1.2	Wed Mar 10 21:36:14 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-VMI-icc.arch,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)


****************************************
Date:	Friday March 12, 19104 @ 16:52
Author:	fzhu

Update of /Projects/namd2/cvsroot/namd2/src
In directory philo.ks.uiuc.edu:/home/fzhu/namd/namd2/src

Modified Files:
	ComputeMgr.C GlobalMasterSMD.C GlobalMasterSMD.h 
Log Message:
Added a safety check to make sure that the atom count in SMDFile be the
same as the number of atoms in the structure.


===================================================================
File: ComputeMgr.C     	Status: Up-to-date

   Working revision:	1.1059	Fri Mar 12 22:38:28 2004
   Repository revision:	1.1059	/Projects/namd2/cvsroot/namd2/src/ComputeMgr.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1057)
	release-2-5-beta-3       	(revision: 1.1057)
	release-2-5-beta-2       	(revision: 1.1057)
	release-2-5-beta-1       	(revision: 1.1049)
	release-2-4              	(revision: 1.1049)
	release-2-4-beta-2       	(revision: 1.1049)
	release-2-4-beta-1       	(revision: 1.1048)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1039)
	release-2-2-beta-3       	(revision: 1.1039)
	release-2-2-beta-2       	(revision: 1.1039)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1031)
	release-2-1-beta-4       	(revision: 1.1031)
	release-2-1-beta-3       	(revision: 1.1031)
	release-2-1-beta-2       	(revision: 1.1031)
	release-2-1-beta-1       	(revision: 1.1029)
	release-2-0-pre-charm-syntax	(revision: 1.1026)
	release-2-0              	(revision: 1.1026)
	release-2-0-beta-3       	(revision: 1.1026)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1004)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: GlobalMasterSMD.C	Status: Up-to-date

   Working revision:	1.4	Fri Mar 12 22:41:26 2004
   Repository revision:	1.4	/Projects/namd2/cvsroot/namd2/src/GlobalMasterSMD.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)

===================================================================
File: GlobalMasterSMD.h	Status: Up-to-date

   Working revision:	1.2	Fri Mar 12 22:40:48 2004
   Repository revision:	1.2	/Projects/namd2/cvsroot/namd2/src/GlobalMasterSMD.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1)
	release-2-5-beta-3       	(revision: 1.1)
	release-2-5-beta-2       	(revision: 1.1)
	release-2-5-beta-1       	(revision: 1.1)
	release-2-4              	(revision: 1.1)
	release-2-4-beta-2       	(revision: 1.1)
	release-2-4-beta-1       	(revision: 1.1)


****************************************
Date:	Thursday March 18, 19104 @ 12:50
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp5/namd2/src

Modified Files:
	Output.C 
Log Message:
Write cosines of lattice angles in DCD file.


===================================================================
File: Output.C         	Status: Up-to-date

   Working revision:	1.49	Thu Mar 18 18:46:55 2004
   Repository revision:	1.49	/Projects/namd2/cvsroot/namd2/src/Output.C,v

   Existing Tags:
	release-2-5              	(revision: 1.48)
	release-2-5-beta-3       	(revision: 1.48)
	release-2-5-beta-2       	(revision: 1.48)
	release-2-5-beta-1       	(revision: 1.43)
	release-2-4              	(revision: 1.41)
	release-2-4-beta-2       	(revision: 1.41)
	release-2-4-beta-1       	(revision: 1.41)
	release-2-3              	(revision: 1.40)
	release-2-3-beta-2       	(revision: 1.40)
	release-2-3-beta-1       	(revision: 1.39)
	release-2-2              	(revision: 1.37)
	release-2-2-beta-3       	(revision: 1.37)
	release-2-2-beta-2       	(revision: 1.35)
	release-2-2-beta-1       	(revision: 1.35)
	release-2-1              	(revision: 1.32)
	release-2-1-beta-4       	(revision: 1.32)
	release-2-1-beta-3       	(revision: 1.31)
	release-2-1-beta-2       	(revision: 1.27)
	release-2-1-beta-1       	(revision: 1.24)
	release-2-0-pre-charm-syntax	(revision: 1.17)
	release-2-0              	(revision: 1.17)
	release-2-0-beta-3       	(revision: 1.17)
	release-2-0-beta-2       	(revision: 1.15)
	release-alpha-1          	(revision: 1.11)
	development-4            	(revision: 1.6)
	development-3            	(revision: 1.1)


****************************************
Date:	Friday March 19, 19104 @ 12:43
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp5/namd2/src

Modified Files:
	ScriptTcl.C ScriptTcl.h 
Log Message:
Added initcheck call to consForceConfig Tcl command.


===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.52	Fri Mar 19 17:23:47 2004
   Repository revision:	1.52	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5              	(revision: 1.51)
	release-2-5-beta-3       	(revision: 1.50)
	release-2-5-beta-2       	(revision: 1.50)
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.25	Fri Mar 19 17:25:43 2004
   Repository revision:	1.25	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-5              	(revision: 1.24)
	release-2-5-beta-3       	(revision: 1.24)
	release-2-5-beta-2       	(revision: 1.24)
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.17)
	release-2-4-beta-2       	(revision: 1.17)
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.16)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)


****************************************
Date:	Tuesday March 30, 19104 @ 21:30
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv21932

Added Files:
	Linux-amd64-MPI.arch 
Log Message:
config for MPI on amd64.


===================================================================
File: Linux-amd64-MPI.arch	Status: Up-to-date

   Working revision:	1.1	Wed Mar 31 03:30:19 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-amd64-MPI.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Saturday April 3, 19104 @ 12:21
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/arch
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv11762

Added Files:
	Linux-i686-CMPI-g++.arch 
Log Message:
for CMPI + g++


===================================================================
File: Linux-i686-CMPI-g++.arch	Status: Up-to-date

   Working revision:	1.1	Sat Apr  3 18:21:46 2004
   Repository revision:	1.1	/Projects/namd2/cvsroot/namd2/arch/Linux-i686-CMPI-g++.arch,v

   Existing Tags:
	No Tags Exist


****************************************
Date:	Thursday April 15, 19104 @ 14:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp5/namd2/src

Modified Files:
	ComputeNonbondedBase.h Molecule.C Molecule.h SimParameters.C 
	SimParameters.h 
Log Message:
Fixed excessive memory usage by exclusion flag arrays for large, highly
bonded structures such as covalent Si crystals.  Arrays larger than the
new maxExclusionFlags parameter are generated from compressed lists of
excluded atoms before entering the pairlist generation inner loop.  This
should have no affect on the performance of biopolymer simulations.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1105	Wed Apr 14 23:13:43 2004
   Repository revision:	1.1105	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1103)
	release-2-5-beta-3       	(revision: 1.1103)
	release-2-5-beta-2       	(revision: 1.1103)
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1088	Wed Apr 14 22:45:04 2004
   Repository revision:	1.1088	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1085)
	release-2-5-beta-3       	(revision: 1.1084)
	release-2-5-beta-2       	(revision: 1.1082)
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1049	Wed Apr 14 23:12:27 2004
   Repository revision:	1.1049	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1048)
	release-2-5-beta-3       	(revision: 1.1048)
	release-2-5-beta-2       	(revision: 1.1048)
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1040)
	release-2-4-beta-2       	(revision: 1.1040)
	release-2-4-beta-1       	(revision: 1.1038)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1034)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.C  	Status: Up-to-date

   Working revision:	1.1196	Wed Apr 14 22:27:34 2004
   Repository revision:	1.1196	/Projects/namd2/cvsroot/namd2/src/SimParameters.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1194)
	release-2-5-beta-3       	(revision: 1.1194)
	release-2-5-beta-2       	(revision: 1.1193)
	release-2-5-beta-1       	(revision: 1.1147)
	release-2-4              	(revision: 1.1143)
	release-2-4-beta-2       	(revision: 1.1142)
	release-2-4-beta-1       	(revision: 1.1138)
	release-2-3              	(revision: 1.1129)
	release-2-3-beta-2       	(revision: 1.1127)
	release-2-3-beta-1       	(revision: 1.1118)
	release-2-2              	(revision: 1.1113)
	release-2-2-beta-3       	(revision: 1.1113)
	release-2-2-beta-2       	(revision: 1.1113)
	release-2-2-beta-1       	(revision: 1.1111)
	release-2-1              	(revision: 1.1098)
	release-2-1-beta-4       	(revision: 1.1095)
	release-2-1-beta-3       	(revision: 1.1092)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1080)
	release-2-0-pre-charm-syntax	(revision: 1.1062)
	release-2-0              	(revision: 1.1062)
	release-2-0-beta-3       	(revision: 1.1055)
	release-2-0-beta-2       	(revision: 1.1046)
	release-alpha-1          	(revision: 1.1025)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: SimParameters.h  	Status: Up-to-date

   Working revision:	1.1103	Wed Apr 14 22:25:21 2004
   Repository revision:	1.1103	/Projects/namd2/cvsroot/namd2/src/SimParameters.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1101)
	release-2-5-beta-3       	(revision: 1.1101)
	release-2-5-beta-2       	(revision: 1.1100)
	release-2-5-beta-1       	(revision: 1.1078)
	release-2-4              	(revision: 1.1075)
	release-2-4-beta-2       	(revision: 1.1075)
	release-2-4-beta-1       	(revision: 1.1072)
	release-2-3              	(revision: 1.1067)
	release-2-3-beta-2       	(revision: 1.1065)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1058)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1051)
	release-2-1-beta-4       	(revision: 1.1051)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1044)
	release-2-0-pre-charm-syntax	(revision: 1.1033)
	release-2-0              	(revision: 1.1033)
	release-2-0-beta-3       	(revision: 1.1030)
	release-2-0-beta-2       	(revision: 1.1024)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday April 26, 19104 @ 17:17
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp5/namd2/src

Modified Files:
	ComputeNonbondedBase.h ComputeNonbondedBase2.h 
Log Message:
Fixed serious bug in interaction force calculation.  Forces were being
summed with random signs, resulting in effectively random answers that
depended on patch distribution and atom ordering.


===================================================================
File: ComputeNonbondedBase.h	Status: Up-to-date

   Working revision:	1.1106	Mon Apr 26 21:44:13 2004
   Repository revision:	1.1106	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1103)
	release-2-5-beta-3       	(revision: 1.1103)
	release-2-5-beta-2       	(revision: 1.1103)
	release-2-5-beta-1       	(revision: 1.1072)
	release-2-4              	(revision: 1.1071)
	release-2-4-beta-2       	(revision: 1.1071)
	release-2-4-beta-1       	(revision: 1.1068)
	release-2-3              	(revision: 1.1068)
	release-2-3-beta-2       	(revision: 1.1068)
	release-2-3-beta-1       	(revision: 1.1061)
	release-2-2              	(revision: 1.1059)
	release-2-2-beta-3       	(revision: 1.1059)
	release-2-2-beta-2       	(revision: 1.1059)
	release-2-2-beta-1       	(revision: 1.1058)
	release-2-1              	(revision: 1.1049)
	release-2-1-beta-4       	(revision: 1.1049)
	release-2-1-beta-3       	(revision: 1.1049)
	release-2-1-beta-2       	(revision: 1.1049)
	release-2-1-beta-1       	(revision: 1.1045)
	release-2-0-pre-charm-syntax	(revision: 1.1043)
	release-2-0              	(revision: 1.1043)
	release-2-0-beta-3       	(revision: 1.1043)
	release-2-0-beta-2       	(revision: 1.1039)
	release-alpha-1          	(revision: 1.1031)
	development-4            	(revision: 1.1011)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedBase2.h	Status: Up-to-date

   Working revision:	1.8	Mon Apr 26 21:43:14 2004
   Repository revision:	1.8	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedBase2.h,v

   Existing Tags:
	release-2-5              	(revision: 1.7)
	release-2-5-beta-3       	(revision: 1.7)
	release-2-5-beta-2       	(revision: 1.7)


****************************************
Date:	Tuesday May 25, 19104 @ 17:09
Author:	sameer

Update of /home/cvs/namd/cvsroot/namd2
In directory lusaka.ks.uiuc.edu:/tmp/cvs-serv6504

Modified Files:
	Makefile 
Log Message:



===================================================================
File: Makefile         	Status: Up-to-date

   Working revision:	1.1207	Tue May 25 22:09:41 2004
   Repository revision:	1.1207	/home/cvs/namd/cvsroot/namd2/Makefile,v

   Existing Tags:
	release-2-5              	(revision: 1.1205)
	release-2-5-beta-3       	(revision: 1.1203)
	release-2-5-beta-2       	(revision: 1.1202)
	release-2-5-beta-1       	(revision: 1.1178)
	release-2-4              	(revision: 1.1177)
	release-2-4-beta-2       	(revision: 1.1176)
	release-2-4-beta-1       	(revision: 1.1170)
	release-2-3              	(revision: 1.1158)
	release-2-3-beta-2       	(revision: 1.1155)
	release-2-3-beta-1       	(revision: 1.1147)
	release-2-2              	(revision: 1.1135)
	release-2-2-beta-3       	(revision: 1.1134)
	release-2-2-beta-2       	(revision: 1.1131)
	release-2-2-beta-1       	(revision: 1.1123)
	release-2-1              	(revision: 1.1096)
	release-2-1-beta-4       	(revision: 1.1092)
	release-2-1-beta-3       	(revision: 1.1089)
	release-2-1-beta-2       	(revision: 1.1089)
	release-2-1-beta-1       	(revision: 1.1086)
	release-2-0-pre-charm-syntax	(revision: 1.1071)
	release-2-0              	(revision: 1.1069)
	release-2-0-beta-3       	(revision: 1.1068)
	release-2-0-beta-2       	(revision: 1.1068)
	release-alpha-1          	(revision: 1.1051)
	development-4            	(revision: 1.1043)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Tuesday June 15, 19104 @ 10:37
Author:	jim

Update of /Projects/namd2/cvsroot/namd2
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp5/namd2

Modified Files:
	config 
Log Message:
Make CMPI a preserved arch flag.


===================================================================
File: config           	Status: Needs Merge

   Working revision:	1.36	Fri Mar  5 17:02:07 2004
   Repository revision:	1.37	/Projects/namd2/cvsroot/namd2/config,v

   Existing Tags:
	release-2-5              	(revision: 1.35)
	release-2-5-beta-3       	(revision: 1.35)
	release-2-5-beta-2       	(revision: 1.35)
	release-2-5-beta-1       	(revision: 1.28)
	release-2-4              	(revision: 1.28)
	release-2-4-beta-2       	(revision: 1.28)
	release-2-4-beta-1       	(revision: 1.27)
	release-2-3              	(revision: 1.26)
	release-2-3-beta-2       	(revision: 1.26)
	release-2-3-beta-1       	(revision: 1.25)
	release-2-2              	(revision: 1.18)
	release-2-2-beta-3       	(revision: 1.18)
	release-2-2-beta-2       	(revision: 1.18)
	release-2-2-beta-1       	(revision: 1.16)
	release-2-1              	(revision: 1.11)
	release-2-1-beta-4       	(revision: 1.10)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.9)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.6)
	release-2-0              	(revision: 1.5)
	release-2-0-beta-3       	(revision: 1.5)
	release-2-0-beta-2       	(revision: 1.5)
	release-alpha-1          	(revision: 1.1)


****************************************
Date:	Wednesday June 16, 19104 @ 12:23
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv26634

Modified Files:
	Rebalancer.C 
Log Message:
added missing initialization of bestP to NULL.


===================================================================
File: Rebalancer.C     	Status: Up-to-date

   Working revision:	1.49	Wed Jun 16 17:23:26 2004
   Repository revision:	1.49	/Projects/namd2/cvsroot/namd2/src/Rebalancer.C,v

   Existing Tags:
	release-2-5              	(revision: 1.48)
	release-2-5-beta-3       	(revision: 1.48)
	release-2-5-beta-2       	(revision: 1.48)
	release-2-5-beta-1       	(revision: 1.34)
	release-2-4              	(revision: 1.34)
	release-2-4-beta-2       	(revision: 1.34)
	release-2-4-beta-1       	(revision: 1.34)
	release-2-3              	(revision: 1.34)
	release-2-3-beta-2       	(revision: 1.34)
	release-2-3-beta-1       	(revision: 1.32)
	release-2-2              	(revision: 1.30)
	release-2-2-beta-3       	(revision: 1.30)
	release-2-2-beta-2       	(revision: 1.30)
	release-2-2-beta-1       	(revision: 1.29)
	release-2-1              	(revision: 1.22)
	release-2-1-beta-4       	(revision: 1.22)
	release-2-1-beta-3       	(revision: 1.22)
	release-2-1-beta-2       	(revision: 1.22)
	release-2-1-beta-1       	(revision: 1.21)
	release-2-0-pre-charm-syntax	(revision: 1.21)
	release-2-0              	(revision: 1.21)
	release-2-0-beta-3       	(revision: 1.19)
	release-2-0-beta-2       	(revision: 1.18)
	release-alpha-1          	(revision: 1.12)
	development-4            	(revision: 1.8)


****************************************
Date:	Thursday June 17, 19104 @ 16:35
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv17111

Modified Files:
	main.C 
Log Message:
changed CmiMyPe() to CkMyPe() to avoid direct Converse calls.


===================================================================
File: main.C           	Status: Up-to-date

   Working revision:	1.1053	Thu Jun 17 21:35:51 2004
   Repository revision:	1.1053	/Projects/namd2/cvsroot/namd2/src/main.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1050)
	release-2-5-beta-3       	(revision: 1.1050)
	release-2-5-beta-2       	(revision: 1.1050)
	release-2-5-beta-1       	(revision: 1.1044)
	release-2-4              	(revision: 1.1044)
	release-2-4-beta-2       	(revision: 1.1044)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1044)
	release-2-3-beta-1       	(revision: 1.1042)
	release-2-2              	(revision: 1.1040)
	release-2-2-beta-3       	(revision: 1.1040)
	release-2-2-beta-2       	(revision: 1.1040)
	release-2-2-beta-1       	(revision: 1.1039)
	release-2-1              	(revision: 1.1027)
	release-2-1-beta-4       	(revision: 1.1026)
	release-2-1-beta-3       	(revision: 1.1025)
	release-2-1-beta-2       	(revision: 1.1022)
	release-2-1-beta-1       	(revision: 1.1017)
	release-2-0-pre-charm-syntax	(revision: 1.1015)
	release-2-0              	(revision: 1.1014)
	release-2-0-beta-3       	(revision: 1.1012)
	release-2-0-beta-2       	(revision: 1.1010)
	release-alpha-1          	(revision: 1.1004)
	development-4            	(revision: 1.1003)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday June 17, 19104 @ 16:46
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv17986

Modified Files:
	NamdNborLB.C 
Log Message:
CmiMyPe to CkMyPe kind of stuff.


===================================================================
File: NamdNborLB.C     	Status: Up-to-date

   Working revision:	1.17	Thu Jun 17 21:46:38 2004
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/src/NamdNborLB.C,v

   Existing Tags:
	release-2-5              	(revision: 1.16)
	release-2-5-beta-3       	(revision: 1.16)
	release-2-5-beta-2       	(revision: 1.16)
	release-2-5-beta-1       	(revision: 1.13)
	release-2-4              	(revision: 1.13)
	release-2-4-beta-2       	(revision: 1.13)
	release-2-4-beta-1       	(revision: 1.12)


****************************************
Date:	Thursday June 17, 19104 @ 16:48
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv18067

Modified Files:
	Molecule.C 
Log Message:
Cmi => Ck calls.


===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1089	Thu Jun 17 21:48:33 2004
   Repository revision:	1.1089	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1085)
	release-2-5-beta-3       	(revision: 1.1084)
	release-2-5-beta-2       	(revision: 1.1082)
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Thursday June 17, 19104 @ 16:51
Author:	gzheng

Update of /Projects/namd2/cvsroot/namd2/src
In directory ruse.ks.uiuc.edu:/tmp/cvs-serv18282

Modified Files:
	HomePatch.C Controller.C ComputeNonbondedUtil.C 
Log Message:
Cmi => Ck calls.
For BigSim, attach Controller thread to virtual processor thread.


===================================================================
File: HomePatch.C      	Status: Up-to-date

   Working revision:	1.1115	Thu Jun 17 21:51:08 2004
   Repository revision:	1.1115	/Projects/namd2/cvsroot/namd2/src/HomePatch.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1114)
	release-2-5-beta-3       	(revision: 1.1114)
	release-2-5-beta-2       	(revision: 1.1114)
	release-2-5-beta-1       	(revision: 1.1093)
	release-2-4              	(revision: 1.1090)
	release-2-4-beta-2       	(revision: 1.1090)
	release-2-4-beta-1       	(revision: 1.1089)
	release-2-3              	(revision: 1.1088)
	release-2-3-beta-2       	(revision: 1.1088)
	release-2-3-beta-1       	(revision: 1.1087)
	release-2-2              	(revision: 1.1083)
	release-2-2-beta-3       	(revision: 1.1083)
	release-2-2-beta-2       	(revision: 1.1083)
	release-2-2-beta-1       	(revision: 1.1083)
	release-2-1              	(revision: 1.1067)
	release-2-1-beta-4       	(revision: 1.1067)
	release-2-1-beta-3       	(revision: 1.1066)
	release-2-1-beta-2       	(revision: 1.1066)
	release-2-1-beta-1       	(revision: 1.1060)
	release-2-0-pre-charm-syntax	(revision: 1.1051)
	release-2-0              	(revision: 1.1050)
	release-2-0-beta-3       	(revision: 1.1048)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1037)
	development-4            	(revision: 1.1030)
	development-3            	(revision: 1.1015)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Controller.C     	Status: Up-to-date

   Working revision:	1.1194	Thu Jun 17 21:51:08 2004
   Repository revision:	1.1194	/Projects/namd2/cvsroot/namd2/src/Controller.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1192)
	release-2-5-beta-3       	(revision: 1.1191)
	release-2-5-beta-2       	(revision: 1.1190)
	release-2-5-beta-1       	(revision: 1.1154)
	release-2-4              	(revision: 1.1145)
	release-2-4-beta-2       	(revision: 1.1143)
	release-2-4-beta-1       	(revision: 1.1142)
	release-2-3              	(revision: 1.1141)
	release-2-3-beta-2       	(revision: 1.1141)
	release-2-3-beta-1       	(revision: 1.1135)
	release-2-2              	(revision: 1.1131)
	release-2-2-beta-3       	(revision: 1.1131)
	release-2-2-beta-2       	(revision: 1.1129)
	release-2-2-beta-1       	(revision: 1.1126)
	release-2-1              	(revision: 1.1107)
	release-2-1-beta-4       	(revision: 1.1103)
	release-2-1-beta-3       	(revision: 1.1100)
	release-2-1-beta-2       	(revision: 1.1091)
	release-2-1-beta-1       	(revision: 1.1083)
	release-2-0-pre-charm-syntax	(revision: 1.1065)
	release-2-0              	(revision: 1.1065)
	release-2-0-beta-3       	(revision: 1.1056)
	release-2-0-beta-2       	(revision: 1.1044)
	release-alpha-1          	(revision: 1.1027)
	development-4            	(revision: 1.1021)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ComputeNonbondedUtil.C	Status: Up-to-date

   Working revision:	1.1075	Thu Jun 17 21:51:08 2004
   Repository revision:	1.1075	/Projects/namd2/cvsroot/namd2/src/ComputeNonbondedUtil.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1074)
	release-2-5-beta-3       	(revision: 1.1074)
	release-2-5-beta-2       	(revision: 1.1074)
	release-2-5-beta-1       	(revision: 1.1047)
	release-2-4              	(revision: 1.1046)
	release-2-4-beta-2       	(revision: 1.1046)
	release-2-4-beta-1       	(revision: 1.1044)
	release-2-3              	(revision: 1.1044)
	release-2-3-beta-2       	(revision: 1.1043)
	release-2-3-beta-1       	(revision: 1.1036)
	release-2-2              	(revision: 1.1036)
	release-2-2-beta-3       	(revision: 1.1036)
	release-2-2-beta-2       	(revision: 1.1036)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1030)
	release-2-1-beta-4       	(revision: 1.1030)
	release-2-1-beta-3       	(revision: 1.1030)
	release-2-1-beta-2       	(revision: 1.1030)
	release-2-1-beta-1       	(revision: 1.1027)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1022)
	release-2-0-beta-3       	(revision: 1.1021)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1015)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1000)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday July 26, 19104 @ 17:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/src
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp6/namd2/src

Modified Files:
	Broadcasts.h Molecule.C Molecule.h Node.C Node.ci Node.h 
	ScriptTcl.C ScriptTcl.h Sequencer.C Sequencer.h 
Log Message:
Added updateCharges Tcl command.


===================================================================
File: Broadcasts.h     	Status: Up-to-date

   Working revision:	1.16	Mon Jul 26 21:14:53 2004
   Repository revision:	1.16	/Projects/namd2/cvsroot/namd2/src/Broadcasts.h,v

   Existing Tags:
	release-2-5              	(revision: 1.15)
	release-2-5-beta-3       	(revision: 1.15)
	release-2-5-beta-2       	(revision: 1.15)
	release-2-5-beta-1       	(revision: 1.13)
	release-2-4              	(revision: 1.13)
	release-2-4-beta-2       	(revision: 1.13)
	release-2-4-beta-1       	(revision: 1.13)
	release-2-3              	(revision: 1.13)
	release-2-3-beta-2       	(revision: 1.13)
	release-2-3-beta-1       	(revision: 1.13)
	release-2-2              	(revision: 1.13)
	release-2-2-beta-3       	(revision: 1.13)
	release-2-2-beta-2       	(revision: 1.13)
	release-2-2-beta-1       	(revision: 1.13)
	release-2-1              	(revision: 1.9)
	release-2-1-beta-4       	(revision: 1.9)
	release-2-1-beta-3       	(revision: 1.9)
	release-2-1-beta-2       	(revision: 1.8)
	release-2-1-beta-1       	(revision: 1.6)
	release-2-0-pre-charm-syntax	(revision: 1.4)
	release-2-0              	(revision: 1.4)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.3)
	release-alpha-1          	(revision: 1.2)
	development-4            	(revision: 1.1)

===================================================================
File: Molecule.C       	Status: Up-to-date

   Working revision:	1.1090	Mon Jul 26 22:55:23 2004
   Repository revision:	1.1090	/Projects/namd2/cvsroot/namd2/src/Molecule.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1085)
	release-2-5-beta-3       	(revision: 1.1084)
	release-2-5-beta-2       	(revision: 1.1082)
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1064)
	release-2-4-beta-2       	(revision: 1.1063)
	release-2-4-beta-1       	(revision: 1.1060)
	release-2-3              	(revision: 1.1059)
	release-2-3-beta-2       	(revision: 1.1058)
	release-2-3-beta-1       	(revision: 1.1053)
	release-2-2              	(revision: 1.1053)
	release-2-2-beta-3       	(revision: 1.1053)
	release-2-2-beta-2       	(revision: 1.1053)
	release-2-2-beta-1       	(revision: 1.1049)
	release-2-1              	(revision: 1.1040)
	release-2-1-beta-4       	(revision: 1.1040)
	release-2-1-beta-3       	(revision: 1.1040)
	release-2-1-beta-2       	(revision: 1.1040)
	release-2-1-beta-1       	(revision: 1.1037)
	release-2-0-pre-charm-syntax	(revision: 1.1035)
	release-2-0              	(revision: 1.1035)
	release-2-0-beta-3       	(revision: 1.1033)
	release-2-0-beta-2       	(revision: 1.1030)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1013)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Molecule.h       	Status: Up-to-date

   Working revision:	1.1050	Mon Jul 26 21:39:22 2004
   Repository revision:	1.1050	/Projects/namd2/cvsroot/namd2/src/Molecule.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1048)
	release-2-5-beta-3       	(revision: 1.1048)
	release-2-5-beta-2       	(revision: 1.1048)
	release-2-5-beta-1       	(revision: 1.1042)
	release-2-4              	(revision: 1.1040)
	release-2-4-beta-2       	(revision: 1.1040)
	release-2-4-beta-1       	(revision: 1.1038)
	release-2-3              	(revision: 1.1037)
	release-2-3-beta-2       	(revision: 1.1036)
	release-2-3-beta-1       	(revision: 1.1034)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1032)
	release-2-1              	(revision: 1.1028)
	release-2-1-beta-4       	(revision: 1.1028)
	release-2-1-beta-3       	(revision: 1.1028)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1025)
	release-2-0              	(revision: 1.1025)
	release-2-0-beta-3       	(revision: 1.1023)
	release-2-0-beta-2       	(revision: 1.1022)
	release-alpha-1          	(revision: 1.1014)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.C           	Status: Up-to-date

   Working revision:	1.1071	Mon Jul 26 22:28:18 2004
   Repository revision:	1.1071	/Projects/namd2/cvsroot/namd2/src/Node.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1070)
	release-2-5-beta-3       	(revision: 1.1070)
	release-2-5-beta-2       	(revision: 1.1070)
	release-2-5-beta-1       	(revision: 1.1066)
	release-2-4              	(revision: 1.1066)
	release-2-4-beta-2       	(revision: 1.1066)
	release-2-4-beta-1       	(revision: 1.1066)
	release-2-3              	(revision: 1.1063)
	release-2-3-beta-2       	(revision: 1.1063)
	release-2-3-beta-1       	(revision: 1.1062)
	release-2-2              	(revision: 1.1058)
	release-2-2-beta-3       	(revision: 1.1058)
	release-2-2-beta-2       	(revision: 1.1057)
	release-2-2-beta-1       	(revision: 1.1057)
	release-2-1              	(revision: 1.1043)
	release-2-1-beta-4       	(revision: 1.1042)
	release-2-1-beta-3       	(revision: 1.1042)
	release-2-1-beta-2       	(revision: 1.1041)
	release-2-1-beta-1       	(revision: 1.1038)
	release-2-0-pre-charm-syntax	(revision: 1.1032)
	release-2-0              	(revision: 1.1032)
	release-2-0-beta-3       	(revision: 1.1032)
	release-2-0-beta-2       	(revision: 1.1028)
	release-alpha-1          	(revision: 1.1017)
	development-4            	(revision: 1.1015)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.ci          	Status: Up-to-date

   Working revision:	1.1022	Mon Jul 26 21:39:34 2004
   Repository revision:	1.1022	/Projects/namd2/cvsroot/namd2/src/Node.ci,v

   Existing Tags:
	release-2-5              	(revision: 1.1021)
	release-2-5-beta-3       	(revision: 1.1021)
	release-2-5-beta-2       	(revision: 1.1021)
	release-2-5-beta-1       	(revision: 1.1021)
	release-2-4              	(revision: 1.1021)
	release-2-4-beta-2       	(revision: 1.1021)
	release-2-4-beta-1       	(revision: 1.1021)
	release-2-3              	(revision: 1.1021)
	release-2-3-beta-2       	(revision: 1.1021)
	release-2-3-beta-1       	(revision: 1.1021)
	release-2-2              	(revision: 1.1021)
	release-2-2-beta-3       	(revision: 1.1021)
	release-2-2-beta-2       	(revision: 1.1020)
	release-2-2-beta-1       	(revision: 1.1020)
	release-2-1              	(revision: 1.1012)
	release-2-1-beta-4       	(revision: 1.1012)
	release-2-1-beta-3       	(revision: 1.1012)
	release-2-1-beta-2       	(revision: 1.1011)
	release-2-1-beta-1       	(revision: 1.1009)
	release-2-0-pre-charm-syntax	(revision: 1.1006)
	release-2-0              	(revision: 1.1006)
	release-2-0-beta-3       	(revision: 1.1006)
	release-2-0-beta-2       	(revision: 1.1006)
	release-alpha-1          	(revision: 1.1005)
	development-4            	(revision: 1.1005)
	development-3            	(revision: 1.1001)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Node.h           	Status: Up-to-date

   Working revision:	1.1033	Mon Jul 26 22:12:36 2004
   Repository revision:	1.1033	/Projects/namd2/cvsroot/namd2/src/Node.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1032)
	release-2-5-beta-3       	(revision: 1.1032)
	release-2-5-beta-2       	(revision: 1.1032)
	release-2-5-beta-1       	(revision: 1.1030)
	release-2-4              	(revision: 1.1030)
	release-2-4-beta-2       	(revision: 1.1030)
	release-2-4-beta-1       	(revision: 1.1030)
	release-2-3              	(revision: 1.1030)
	release-2-3-beta-2       	(revision: 1.1030)
	release-2-3-beta-1       	(revision: 1.1030)
	release-2-2              	(revision: 1.1029)
	release-2-2-beta-3       	(revision: 1.1029)
	release-2-2-beta-2       	(revision: 1.1028)
	release-2-2-beta-1       	(revision: 1.1028)
	release-2-1              	(revision: 1.1018)
	release-2-1-beta-4       	(revision: 1.1018)
	release-2-1-beta-3       	(revision: 1.1018)
	release-2-1-beta-2       	(revision: 1.1017)
	release-2-1-beta-1       	(revision: 1.1015)
	release-2-0-pre-charm-syntax	(revision: 1.1011)
	release-2-0              	(revision: 1.1011)
	release-2-0-beta-3       	(revision: 1.1011)
	release-2-0-beta-2       	(revision: 1.1011)
	release-alpha-1          	(revision: 1.1008)
	development-4            	(revision: 1.1007)
	development-3            	(revision: 1.1002)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: ScriptTcl.C      	Status: Up-to-date

   Working revision:	1.53	Mon Jul 26 22:31:09 2004
   Repository revision:	1.53	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.C,v

   Existing Tags:
	release-2-5              	(revision: 1.51)
	release-2-5-beta-3       	(revision: 1.50)
	release-2-5-beta-2       	(revision: 1.50)
	release-2-5-beta-1       	(revision: 1.32)
	release-2-4              	(revision: 1.32)
	release-2-4-beta-2       	(revision: 1.32)
	release-2-4-beta-1       	(revision: 1.32)
	release-2-3              	(revision: 1.29)
	release-2-3-beta-2       	(revision: 1.29)
	release-2-3-beta-1       	(revision: 1.26)
	release-2-2              	(revision: 1.23)
	release-2-2-beta-3       	(revision: 1.23)
	release-2-2-beta-2       	(revision: 1.22)
	release-2-2-beta-1       	(revision: 1.20)
	release-2-1              	(revision: 1.12)
	release-2-1-beta-4       	(revision: 1.12)
	release-2-1-beta-3       	(revision: 1.11)
	release-2-1-beta-2       	(revision: 1.6)
	release-2-1-beta-1       	(revision: 1.4)

===================================================================
File: ScriptTcl.h      	Status: Up-to-date

   Working revision:	1.26	Mon Jul 26 21:49:49 2004
   Repository revision:	1.26	/Projects/namd2/cvsroot/namd2/src/ScriptTcl.h,v

   Existing Tags:
	release-2-5              	(revision: 1.24)
	release-2-5-beta-3       	(revision: 1.24)
	release-2-5-beta-2       	(revision: 1.24)
	release-2-5-beta-1       	(revision: 1.17)
	release-2-4              	(revision: 1.17)
	release-2-4-beta-2       	(revision: 1.17)
	release-2-4-beta-1       	(revision: 1.17)
	release-2-3              	(revision: 1.16)
	release-2-3-beta-2       	(revision: 1.16)
	release-2-3-beta-1       	(revision: 1.16)
	release-2-2              	(revision: 1.15)
	release-2-2-beta-3       	(revision: 1.15)
	release-2-2-beta-2       	(revision: 1.15)
	release-2-2-beta-1       	(revision: 1.14)
	release-2-1              	(revision: 1.8)
	release-2-1-beta-4       	(revision: 1.8)
	release-2-1-beta-3       	(revision: 1.8)
	release-2-1-beta-2       	(revision: 1.5)
	release-2-1-beta-1       	(revision: 1.3)

===================================================================
File: Sequencer.C      	Status: Up-to-date

   Working revision:	1.1149	Mon Jul 26 21:17:10 2004
   Repository revision:	1.1149	/Projects/namd2/cvsroot/namd2/src/Sequencer.C,v

   Existing Tags:
	release-2-5              	(revision: 1.1148)
	release-2-5-beta-3       	(revision: 1.1148)
	release-2-5-beta-2       	(revision: 1.1148)
	release-2-5-beta-1       	(revision: 1.1118)
	release-2-4              	(revision: 1.1112)
	release-2-4-beta-2       	(revision: 1.1112)
	release-2-4-beta-1       	(revision: 1.1111)
	release-2-3              	(revision: 1.1111)
	release-2-3-beta-2       	(revision: 1.1111)
	release-2-3-beta-1       	(revision: 1.1107)
	release-2-2              	(revision: 1.1104)
	release-2-2-beta-3       	(revision: 1.1104)
	release-2-2-beta-2       	(revision: 1.1103)
	release-2-2-beta-1       	(revision: 1.1101)
	release-2-1              	(revision: 1.1083)
	release-2-1-beta-4       	(revision: 1.1082)
	release-2-1-beta-3       	(revision: 1.1082)
	release-2-1-beta-2       	(revision: 1.1077)
	release-2-1-beta-1       	(revision: 1.1073)
	release-2-0-pre-charm-syntax	(revision: 1.1059)
	release-2-0              	(revision: 1.1058)
	release-2-0-beta-3       	(revision: 1.1054)
	release-2-0-beta-2       	(revision: 1.1047)
	release-alpha-1          	(revision: 1.1034)
	development-4            	(revision: 1.1031)
	development-3            	(revision: 1.1008)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)

===================================================================
File: Sequencer.h      	Status: Up-to-date

   Working revision:	1.1043	Mon Jul 26 21:15:29 2004
   Repository revision:	1.1043	/Projects/namd2/cvsroot/namd2/src/Sequencer.h,v

   Existing Tags:
	release-2-5              	(revision: 1.1042)
	release-2-5-beta-3       	(revision: 1.1042)
	release-2-5-beta-2       	(revision: 1.1042)
	release-2-5-beta-1       	(revision: 1.1037)
	release-2-4              	(revision: 1.1036)
	release-2-4-beta-2       	(revision: 1.1036)
	release-2-4-beta-1       	(revision: 1.1035)
	release-2-3              	(revision: 1.1035)
	release-2-3-beta-2       	(revision: 1.1035)
	release-2-3-beta-1       	(revision: 1.1035)
	release-2-2              	(revision: 1.1034)
	release-2-2-beta-3       	(revision: 1.1034)
	release-2-2-beta-2       	(revision: 1.1034)
	release-2-2-beta-1       	(revision: 1.1034)
	release-2-1              	(revision: 1.1029)
	release-2-1-beta-4       	(revision: 1.1029)
	release-2-1-beta-3       	(revision: 1.1029)
	release-2-1-beta-2       	(revision: 1.1028)
	release-2-1-beta-1       	(revision: 1.1026)
	release-2-0-pre-charm-syntax	(revision: 1.1022)
	release-2-0              	(revision: 1.1021)
	release-2-0-beta-3       	(revision: 1.1020)
	release-2-0-beta-2       	(revision: 1.1019)
	release-alpha-1          	(revision: 1.1010)
	development-4            	(revision: 1.1010)
	development-3            	(revision: 1.1003)
	development-2            	(revision: 1.1000)
	development-1-1          	(branch: 1.778.2)
	development-1            	(revision: 1.778)
	development-0-1          	(branch: 1.777.2)
	development-0            	(revision: 1.777)


****************************************
Date:	Monday July 26, 19104 @ 17:56
Author:	jim

Update of /Projects/namd2/cvsroot/namd2/ug
In directory santiago.ks.uiuc.edu:/Projects/namd2/Programmers/jim/tmp6/namd2/ug

Modified Files:
	ug_start.tex 
Log Message:



===================================================================
File: ug_start.tex     	Status: Up-to-date

   Working revision:	1.17	Mon Jul 26 22:47:50 2004
   Repository revision:	1.17	/Projects/namd2/cvsroot/namd2/ug/ug_start.tex,v

   Existing Tags:
	release-2-5              	(revision: 1.16)
	release-2-5-beta-3       	(revision: 1.15)
	release-2-5-beta-2       	(revision: 1.15)
	release-2-5-beta-1       	(revision: 1.11)
	release-2-4              	(revision: 1.10)
	release-2-4-beta-2       	(revision: 1.10)
	release-2-4-beta-1       	(revision: 1.10)
	release-2-3              	(revision: 1.10)
	release-2-3-beta-2       	(revision: 1.10)
	release-2-3-beta-1       	(revision: 1.9)
	release-2-2              	(revision: 1.9)
	release-2-2-beta-3       	(revision: 1.9)
	release-2-2-beta-2       	(revision: 1.9)
	release-2-2-beta-1       	(revision: 1.8)
	release-2-1              	(revision: 1.7)
	release-2-1-beta-4       	(revision: 1.7)
	release-2-1-beta-3       	(revision: 1.7)
	release-2-1-beta-2       	(revision: 1.7)
	release-2-1-beta-1       	(revision: 1.7)
	release-2-0-pre-charm-syntax	(revision: 1.7)
	release-2-0              	(revision: 1.7)
	release-2-0-beta-3       	(revision: 1.4)
	release-2-0-beta-2       	(revision: 1.2)

