From jes at chem.au.dk  Fri Oct  3 07:19:03 2008
From: jes at chem.au.dk (Jesper Soerensen)
Date: Fri, 03 Oct 2008 14:19:03 +0200
Subject: [cluster-l] Problems compiling NAMD
Message-ID: <1223036343.13450.54.camel@kempro.chem.au.dk>

Hi,

I've just compiled NAMD on our cluster and this runs through fine, but
when I start a job I get the following error in the log file: 
>Info: Entering startup phase 8 with 134856 kB of memory in use.
>Info: Finished startup with 143120 kB of memory in use.
>1 additional process aborted (not shown)

And the cluster job-error log says:
>mpirun noticed that job rank 0 with PID 25232 on node s07n06 exited on
>signal 11 (Segmentation fault). 

I am running a Linux-amd64-MPI-icc-ifort version if this helps. Also, let
me know if there is more information I can give to help solve the
problem. I'm just wondering if anybody has seen this type of error
before.

Kind regards,

Jesper Soerensen


-- 
Jesper S?rensen, M.Sc.
Ph.D.-student
Biomodelling Group, inSPIN and iNANO centers
Department of Chemistry
University of Aarhus
Langelandsgade 140
8000 Aarhus C
Office: 1510-419
Tlf. 89423385
email: jes at chem.au.dk
www: www.chem.au.dk/~biomodelling