numsteps			20000
structure			../common/ubiquitin_solvate.psf
coordinates			../common/ubiquitin_solvate.pdb
outputName			rot-b-long

set last			../common/rot-eq-2
bincoordinates			${last}.coor
binvelocities			${last}.vel
extendedSystem			${last}.xsc

#temperature			288

langevin			on
langevinDamping			1.0
langevinTemp			288
langevinHydrogen		off

switching			on
switchdist			10
cutoff				12
pairlistdist			14
margin				5

binaryOutput			yes
binaryRestart			yes

paraTypeCharmm			on

parameters			../common/par_all27_prot_lipid.inp

COMmotion			no

outputEnergies			100
outputTiming			100
xstFreq				100
dcdFreq				100
restartFreq			100

timestep			1
nonBondedFreq			2
fullElectFrequency		4
stepsPerCycle			20

exclude				scaled1-4
1-4scaling			1

Pme				on
PmeGridSizeX			48
PmeGridSizeY			48
PmeGridSizeZ			48

tclforces			on
set linaccel			"10 0 0"
set angaccel			1
set targetAtomPdb		../common/ubiquitin_solvate_backbone.pdb
tclforcesscript			rot-b.tcl