!============================================================= ! ! Parameter file generated by the Force Field ToolKit (ffTK) ! ! For additional information, see: ! http://www.ks.uiuc.edu/Research/vmd/plugins/fftk ! http://www.ks.uiuc.edu/Research/fftk ! ! Authors: ! Christopher G. Mayne ! Beckman Institute for Advanced Science and Technology ! University of Illinois, Urbana-Champaign ! http://www.ks.uiuc.edu/~mayne ! mayne@ks.uiuc.edu ! ! James C. Gumbart ! Georgia Institute of Technology ! http://simbac.gatech.edu ! gumbart_physics.gatech.edu ! ! If you use parameters developed using ffTK, please cite: ! C.G. Mayne, J. Saam, K. Schulten, E. Tajkhorshid, J.C. Gumbart. J. Comput. Chem. 2013, 34, 2757-2770. ! !============================================================= BONDS !V(bond) = Kb(b - b0)**2 ! !Kb: kcal/mole/A**2 !b0: A ! !atom type Kb b0 ! CG331 HGA3 0.000 0.000 CG331 CG321 0.000 0.000 CG321 HGA2 0.000 0.000 CG321 OG311 0.000 0.000 OG311 HGP1 0.000 0.000 ANGLES ! !V(angle) = Ktheta(Theta - Theta0)**2 ! !V(Urey-Bradley) = Kub(S - S0)**2 ! !Ktheta: kcal/mole/rad**2 !Theta0: degrees !Kub: kcal/mole/A**2 (Urey-Bradley) !S0: A ! !atom types Ktheta Theta0 Kub S0 ! ! CG331 CG321 OG311 0.000 0.000 CG331 CG321 HGA2 0.000 0.000 HGA3 CG331 CG321 0.000 0.000 HGA3 CG331 HGA3 0.000 0.000 CG321 OG311 HGP1 0.000 0.000 HGA2 CG321 OG311 0.000 0.000 HGA2 CG321 HGA2 0.000 0.000 DIHEDRALS ! !V(dihedral) = Kchi(1 + cos(n(chi) - delta)) ! !Kchi: kcal/mole !n: multiplicity !delta: degrees ! !atom types Kchi n delta ! CG331 CG321 OG311 HGP1 0.0000 1 0.00 HGA3 CG331 CG321 HGA2 0.0000 1 0.00 HGA3 CG331 CG321 OG311 0.0000 1 0.00 HGA2 CG321 OG311 HGP1 0.0000 1 0.00 IMPROPER ! !V(improper) = Kpsi(psi - psi0)**2 ! !Kpsi: kcal/mole/rad**2 !psi0: degrees !note that the second column of numbers (0) is ignored ! !atom types Kpsi psi0 ! NONBONDED nbxmod 5 atom cdiel shift vatom vdistance vswitch - cutnb 14.0 ctofnb 12.0 ctonnb 10.0 eps 1.0 e14fac 1.0 wmin 1.5 ! !V(Lennard-Jones) = Eps,i,j[(Rmin,i,j/ri,j)**12 - 2(Rmin,i,j/ri,j)**6] ! !epsilon: kcal/mole, Eps,i,j = sqrt(eps,i * eps,j) !Rmin/2: A, Rmin,i,j = Rmin/2,i + Rmin/2,j ! !atom ignored epsilon Rmin/2 ignored eps,1-4 Rmin/2,1-4 ! CG321 0.0 -0.056000 2.010000 0.0 -0.010000 1.900000 CG331 0.0 -0.078000 2.050000 0.0 -0.010000 1.900000 HGA2 0.0 -0.035000 1.340000 HGA3 0.0 -0.024000 1.340000 HGP1 0.0 -0.046000 0.224500 OG311 0.0 -0.192100 1.765000 END