Aligning the molecules

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Aligning the molecules

Now that we have opened MultiSeq and made sure the STAMP parameters are correct, we can align the four molecules loaded into VMD.

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To align the molecules:

1 In the main MultiSeq window go to the top pull-down menu and select Alignment.

2 Then select Run Structural Alignment.

**Figure 6:** Structural alignment showing superposed AARSs.

Once this step is completed, you will be able to view the aligned molecule in the OpenGL Display window.

Brijeet Dhaliwal 2004-09-15