#!/usr/local/bin/vmd
# VMD script written by save_state
# VMD version: 1.8.1b8
set viewplist {}
set fixedlist {}
# Atom selection macros
atomselect macro at {resname ADE A THY T}
atomselect macro acidic {resname ASP GLU}
atomselect macro cyclic {resname HIS PHE PRO TRP TYR}
atomselect macro acyclic {protein and not cyclic}
atomselect macro aliphatic {resname ALA GLY ILE LEU VAL}
atomselect macro alpha {protein and name CA}
atomselect macro amino protein
atomselect macro aromatic {resname HIS PHE TRP TYR}
atomselect macro basic {resname ARG HIS LYS}
atomselect macro bonded {numbonds > 0}
atomselect macro buried {resname ALA LEU VAL ILE PHE CYS MET TRP}
atomselect macro cg {resname CYT C GUA G}
atomselect macro charged {basic or acidic}
atomselect macro hetero {not (protein or nucleic)}
atomselect macro hydrophobic {resname ALA LEU VAL ILE PRO PHE MET TRP}
atomselect macro small {resname ALA GLY SER}
atomselect macro medium {resname VAL THR ASP ASN PRO CYS ASX PCA HYP}
atomselect macro large {protein and not (small or medium)}
atomselect macro neutral {resname VAL PHE GLN TYR HIS CYS MET TRP ASX GLX PCA HYP}
atomselect macro polar {protein and not hydrophobic}
atomselect macro purine {resname ADE A GUA G}
atomselect macro pyrimidine {resname CYT C THY T URI U}
atomselect macro surface {protein and not buried}
atomselect macro lipid {resname DLPE DMPC GPC LPPC PALM PC PGCL POPC POPE}
atomselect macro ion {name CAL CLA MG POT SOD ZN}
atomselect macro sugar {resname AGLC}
atomselect macro solvent {not (protein or sugar or nucleic or lipid)}
atomselect macro carbon {name "C.*" and not ion}
atomselect macro hydrogen {name "[0-9]?H.*"}
atomselect macro nitrogen {name "N.*"}
atomselect macro oxygen {name "O.*"}
atomselect macro sulfur {name "S.*" and not ion}
atomselect macro noh {not hydrogen}
# Display settings
display eyesep       0.065000
display focallength  2.000000
display height       6.000000
display distance     -2.000000
display projection   Orthographic
display nearclip set 0.500000
display farclip  set 10.000000
display depthcue   off
display cuestart   0.500000
display cueend     10.000000
display cuedensity 0.400000
display cuemode    Exp2
mol new {da.psf} type psf
mol addfile {imd_ini.pdb} type pdb
mol delrep 0 top
mol representation Ribbons 0.300000 6.000000 2.000000
mol color Name
mol selection {all}
mol material Opaque
mol addrep top
mol representation CPK 1.000000 0.300000 8.000000 6.000000
mol color Name
mol selection {all}
mol material Opaque
mol addrep top
mol representation VDW 0.400000 8.000000
mol color ColorID 3
mol selection {resid 1 and name CA}
mol material Opaque
mol addrep top
mol rename top {da.psf}
set viewpoints([molinfo top]) {{{1.000000 0.000000 0.000000 -0.767000} {0.000000 1.000000 0.000000 1.116000} {0.000000 0.000000 1.000000 0.506000} {0.000000 0.000000 0.000000 1.000000}} {{1.000000 0.000000 0.000000 0.000000} {0.000000 1.000000 0.000000 0.000000} {0.000000 0.000000 1.000000 0.000000} {0.000000 0.000000 0.000000 1.000000}} {{0.099252 0.000000 0.000000 0.000000} {0.000000 0.099252 0.000000 0.000000} {0.000000 0.000000 0.099252 0.000000} {0.000000 0.000000 0.000000 1.000000}} {{1.000000 0.000000 0.000000 0.616782} {0.000000 1.000000 0.000000 -0.166812} {0.000000 0.000000 1.000000 -0.354075} {0.000000 0.000000 0.000000 1.000000}}}
lappend viewplist [molinfo top]
set topmol [molinfo top]
# done with molecule 0
foreach v $viewplist {
  molinfo $v set {center_matrix rotate_matrix scale_matrix global_matrix} $viewpoints($v)
}
foreach v $fixedlist {
  molinfo $v set fixed 1
}
unset viewplist
unset fixedlist
mol top $topmol
unset topmol
proc vmdrestoremycolors {} {
  color Chain {B} blue
  color Segname {BH} blue
  color Molecule {0} blue
  color Molecule {da.psf} blue
  color Surface {Grasp} gray
  color Labels {Springs} orange
  color change rgb 0 0.0 0.0 1.0
  color change rgb 2 0.34999999404 0.34999999404 0.34999999404
  color change rgb 3 1.0 0.5 0.0
  color change rgb 4 1.0 1.0 0.0
  color change rgb 5 0.5 0.5 0.20000000298
  color change rgb 6 0.600000023842 0.600000023842 0.600000023842
  color change rgb 7 0.0 1.0 0.0
  color change rgb 9 1.0 0.600000023842 0.600000023842
  color change rgb 11 0.649999976158 0.0 0.649999976158
  color change rgb 12 0.5 0.899999976158 0.40000000596
  color change rgb 13 0.899999976158 0.40000000596 0.699999988079
  color change rgb 14 0.5 0.300000011921 0.0
  color change rgb 15 0.5 0.5 0.75
}
vmdrestoremycolors