You are going to use NAMD to simulate temperature echoes in this
hands-on session.  There are altogether 5 simulations outlined in:
01_equil_NVE, 02_quencha, 03_quenchb, 04_consta, and 05_constb.

From the first three exercises, you will generate temperature quenched echoes,
and analyze it using Matlab.

The last two contain optional exercises, from which you will learn about
constant velocity reassignment echoes.

The example output files are available in each directory as example_output.
The example data are available in each directory as example_data.