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Submit your simulation

Here, you will submit and start a simulation. The details of the simulation and how you will analyze it will be explained in a later section. Since the simulation will take some time to finish, you need to submit it now so that when you reach analysis of the results, your simulation will be completed.

The following files will be used for your NAMD job

1. Run the NAMD job sim_short.conf.

Now let's move to the next section while your job is running. You will come back to this job and analyze the results later.;;