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Using the molinfo command
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VMD User's Guide
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Misc. functions and values
Contents
Index
Molecular Analysis
Subsections
Using the
molinfo
command
Using the
atomselect
command
Analysis scripts
Finding waters near a protein
Total mass of a selection
Coordinate min and max
Radius of gyration
Root mean square deviation
RMS Fit and Alignment
RMS Fit and Alignment Extension
RMSD calculation
RMS Alignment
RMS and scripting
RMSD Computation
Computing the Alignment
A simulation example script
VMD Script Commands for Colors
Changing the color scale definitions
Creating a set of black-and-white color definitions
Revert all RGB values to defaults
Coloring Trick - Override a Coloring Category
vmd@ks.uiuc.edu
