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DynamicBonds
The DynamicBonds representation will automatically perform a
distanced-based bond search for the active atom selection and
active trajectory frame. The DynamicBonds representation does
not perform the endpoint fixup procedure described above for the
regular Bonds representation. Instead, it is intended to be used
in concert with the VDW representation to show bonds that are being
created and destroyed during the course of a trajectory.
vmd@ks.uiuc.edu