#
# VMD default color assignments
#
# color category name, category item name, color name 
#
Name   H   white
Name   O   red
Name   N   blue
Name   C   cyan
Name   S   yellow
Name   P   tan
Name   Z   silver

Type   H   white
Type   O   red
Type   N   blue
Type   C   cyan
Type   S   yellow
Type   P   tan
Type   Z   silver


Element Ac ochre
Element Ag ochre
Element Al ochre
Element Am ochre
Element Ar ochre
Element As ochre
Element At ochre
Element Au ochre
Element B  ochre
Element Ba ochre
Element Be ochre
Element Bh ochre
Element Bi ochre
Element Bk ochre
Element Br ochre
Element C  cyan
Element Ca ochre
Element Cd ochre
Element Ce ochre
Element Cf ochre
Element Cl ochre
Element Cm ochre
Element Co ochre
Element Cr ochre
Element Cs ochre
Element Cu ochre
Element Db ochre
Element Ds ochre
Element Dy ochre
Element Er ochre
Element Es ochre
Element Eu ochre
Element F  ochre
Element Fe ochre
Element Fm ochre
Element Fr ochre
Element Ga ochre
Element Gd ochre
Element Ge ochre
Element H  white
Element He ochre
Element Hf ochre
Element Hg ochre
Element Ho ochre
Element Hs ochre
Element I  ochre
Element In ochre
Element Ir ochre
Element K  ochre
Element Kr ochre
Element La ochre
Element Li ochre
Element Lr ochre
Element Lu ochre
Element Md ochre
Element Mg ochre
Element Mn ochre
Element Mo ochre
Element Mt ochre
Element N  blue
Element Na ochre
Element Nb ochre
Element Nd ochre
Element Ne ochre
Element Ni ochre
Element No ochre
Element Np ochre
Element O  red
Element Os ochre
Element P  tan
Element Pa ochre
Element Pb ochre
Element Pd ochre
Element Pm ochre
Element Po ochre
Element Pr ochre
Element Pt ochre
Element Pu ochre
Element Ra ochre
Element Rb ochre
Element Re ochre
Element Rf ochre
Element Rg ochre
Element Rh ochre
Element Rn ochre
Element Ru ochre
Element S  yellow
Element Sb ochre
Element Sc ochre
Element Se ochre
Element Sg ochre
Element Si ochre
Element Sm ochre
Element Sn ochre
Element Sr ochre
Element Ta ochre
Element Tb ochre
Element Tc ochre
Element Te ochre
Element Th ochre
Element Ti ochre
Element Tl ochre
Element Tm ochre
Element U  ochre
Element V  ochre
Element W  ochre
Element X  purple
Element Xe ochre
Element Y  ochre
Element Yb ochre
Element Zn silver
Element Zr ochre


Resname  ALA   blue
Resname  ARG   white
Resname  ASN   tan
Resname  ASP   red
Resname  CYS   yellow
Resname  GLY   white
Resname  GLU   pink
Resname  GLN   orange
Resname  HIS   cyan
Resname  ILE   green
Resname  LEU   pink
Resname  LYS   cyan
Resname  MET   yellow
Resname  PHE   purple
Resname  PRO   ochre
Resname  SER   yellow
Resname  THR   mauve
Resname  TRP   silver
Resname  TYR   green
Resname  VAL   tan
Resname  ADE   blue
Resname  CYT   orange
Resname  GUA   yellow
Resname  THY   purple
Resname  URA   green
Resname  TIP   cyan
Resname  TIP3  cyan
Resname  WAT   cyan
Resname  SOL   cyan
Resname  H2O   cyan
Resname  LYR   purple
Resname  ZN    silver
Resname  NA    yellow
Resname  CL    green

# Alternate names for the above
Resname  HSE   cyan
Resname  HSD   cyan
Resname  HSP   cyan
Resname  CYX   yellow

Restype  Unassigned    cyan
Restype  Solvent       yellow
Restype  Nucleic_Acid  purple
Restype  Basic         blue
Restype  Acidic        red
Restype  Polar         green
Restype  Nonpolar      white
Restype  Ion           tan

Highlight Proback  green
Highlight Nucback  yellow
Highlight Nonback  blue

Structure {Alpha Helix} purple
Structure 3_10_Helix    mauve
Structure Pi_Helix      red
Structure Extended_Beta yellow
Structure Bridge_Beta   tan
Structure Turn          cyan
Structure Coil          white

Surface   Grasp  gray


