List of Figures

1. Sample VMD session displaying myoglobin.
2. The Main form
3. The Molecules form
4. The Files form
5. The Graphics form (in Image Controls mode)
6. The Graphics form (in Atom Name Lists mode)
7. The Animate form
8. The Edit Animation form
9. The Labels form
10. The Display form
11. Relationship between screen height (SCRHEIGHT), screen distance to origin (SCRDIST), and the viewer
12. The Color form
13. The Material Form
14. The Render form
15. The Sequence form
16. The RamaPlot Window
17. The Tracker form
18. RGB color scale: the three plots shows the contributions of each color, and the resulting colors are on the bottom.
19. The shift to the red component of the RGB scale caused by the value of ``min''.
20. RMS Calculation Tk menu
21. RMS Alignment Tk menu