Molecule objects

The following objects are used to store and represent the molecules in VMD, including their static data as well as their dynamic data. Items which have a specific section listed for them are explained in detail in that section.

Class Name	Section	Files
Animation	25.1	`Animation.h and .C`
Atom	25.2	`Atom.h`
AtomColor	-	`AtomColor.h and .C`
AtomRep	-	`AtomRep.h and .C`
AtomSel	-	`AtomSel.h and .C, AtomParser.h`
BaseMolecule	25.3	`BaseMolecule.h and .C`
CoorDCD	-	`CoorDCD.h and .C, ReadDCD.h and .C`
CoorFile	-	`CoorFile.h and .C`
CoorFileData	-	`CoorFileData.h and .C`
CoorPDB	-	`CoorPDB.h and .C, ReadPDB.h and .C`
DrawMolItem	-	`DrawMolItem.h and .C`
DrawMolecule	25.4	`DrawMolecule.h and .C`
DrawPatch	-	`DrawPatch.h and .C`
Fragment	-	`Fragment.h`
Geometry	-	`Geometry.h and .C`
GeometryAngle	-	`GeometryAngle.h and .C`
GeometryAtom	-	`GeometryAtom.h and .C`
GeometryBond	-	`GeometryBond.h and .C`
GeometryDihedral	-	`GeometryDihedral.h and .C`
GeometryList	-	`GeometryList.h and .C`
GeometryMol	-	`GeometryMol.h and .C`
GeometryTug	-	`GeometryTug.h and .C`

Class Name	Section	Files
MolAction (many)	-	`MolAction.h and .C`
Molecule	25.5	`Molecule.h and .C`
MoleculeFile	-	`MoleculeFile.h and .C`
MoleculeFilePDB	-	`MoleculeFilePDB.h and .C`
MoleculeFilePSF	-	`MoleculePSF.h and .C`
MoleculeFileRaster3D	-	`MoleculeFileRaster3D.h and .C`
MoleculeList	-	`MoleculeList.h and .C`
MoleculeRemote	-	`MoleculeRemote.h and .C`
MoleculeSigma	-	`MoleculeSigma.h and .C`
Residue	-	`Residue.h`
Timestep	25.6	`Timestep.h and .C`