Directory tree structure

When a directory with the VMD source, library, documentation, and other data files is established, the following subdirectories are present:

bin Utility scripts and programs, such as the script used to start the proper architecture-specific VMD \ executable, and the programs used on SGI workstations to change the current stereo mode.

data Data files used when VMD starts up, i.e., .vmdrc and other `dot' files.

doc Latex documentation files.

lib Special libraries and associated header files used by VMD , such as the MDComm library.

proteins Example protein data files used for testing.

src Source code files (.c, .C, and .h files).