# Database names and version numbers, for automatic distribution 
# and updates for MultiSeq users.

# Format version code
%VERS 1.0

# MultiSeq release 3

# Format is as follows:
# '#' indicates a comment
# Blank lines are ignored
# Each line consists of space-seperated fields in the following order:
#  Key - a unique key used by MultiSeq to identify this database
#  Description - a text description; MUST be in quotes (ie, "desc")
#  URL - location to download the file from
#  BackupURL - location to download the file from if URL is unavailable
#  Version - most recent version number of the database
#  Size - size in bytes of the downloaded file
#  Type - download type; "db" for database or "sw" for software
#  Required - is this download required for proper operation of MultiSeq?  Y or N

# From: ftp://ftp.ncbi.nih.gov/pub/taxonomy/
ncbi_tax "NCBI Taxonomy database" http://www.scs.illinois.edu/schulten/multiseq/r3/db/taxdump.tar.gz http://www.ks.uiuc.edu/Research/vmd/multiseq/r3/db/taxdump.tar.gz 20080726 9552959 db Y
gi_tax_map "NCBI GI to Taxonomy mapping" http://www.scs.illinois.edu/schulten/multiseq/r3/db/gi_taxid_prot.dmp.gz http://www.ks.uiuc.edu/Research/vmd/multiseq/r3/db/gi_taxid_prot.dmp.gz 20080726 55866735 db Y

# From: ftp://ca.expasy.org/databases/enzyme/release/
enzyme "Enzyme nomenclature" http://www.scs.illinois.edu/schulten/multiseq/r3/db/enzyme.dat http://www.ks.uiuc.edu/Research/vmd/multiseq/r3/db/enzyme.dat 39.0 3028134 db Y

# From: http://ca.expasy.org/ftp/databases/uniprot/current_release/knowledgebase/complete/docs/
sp_to_pdb "SWISS-PROT to PDB mapping" http://www.scs.illinois.edu/schulten/multiseq/r3/db/pdbtosp.txt.gz http://www.ks.uiuc.edu/Research/vmd/multiseq/r3/db/pdbtosp.txt.gz 50.6 293626 db Y
speclist "SWISS-PROT to NCBI Taxonomy mapping" http://www.scs.illinois.edu/schulten/multiseq/r3/db/speclist.txt.gz http://www.ks.uiuc.edu/Research/vmd/multiseq/r3/db/speclist.txt.gz 54.8 377457 db Y
acindex "SWISS-PROT to Accession Number mapping" http://www.scs.illinois.edu/schulten/multiseq/r3/db/acindex.txt.gz http://www.ks.uiuc.edu/Research/vmd/multiseq/r3/db/acindex.txt.gz 50.6 1944411 db Y

# From: http://scop.mrc-lmb.cam.ac.uk/scop/parse/
scop_hie "SCOP Hierarchy" http://scop.mrc-lmb.cam.ac.uk/scop/parse/dir.hie.scop.txt_1.69 http://www.scs.illinois.edu/schulten/multiseq/r3/db/dir.hie.scop.txt_1.69 1.69 1875535 db Y
scop_des "SCOP Descriptions" http://scop.mrc-lmb.cam.ac.uk/scop/parse/dir.des.scop.txt_1.69 http://www.scs.illinois.edu/schulten/multiseq/r3/db/dir.des.scop.txt_1.69 1.69 3777740 db Y

# From: http://pgtdb.csie.ncu.edu.tw/download/download.php?tax_id=-999999&intype=0
pgtdb "PGTdb Growth Data" http://www.scs.illinois.edu/schulten/multiseq/r3/db/alltaxid.txt.gz http://www.ks.uiuc.edu/Research/vmd/multiseq/r3/db/alltaxid.txt.gz 20070815 67391 db Y

# Built and maintained by the resource.
crw_names "CRW to Taxonomy mapping" http://www.scs.illinois.edu/schulten/multiseq/r3/db/crwnames.dat http://www.ks.uiuc.edu/Research/vmd/multiseq/r3/db/crwnames.dat 20080109 139064 db Y

# Software packages.
blast "BLAST Installation Directory" "" "" "" "" sw N BLASTMAT data BLASTDB ""
psipred "PSIPRED Installation Directory" "" "" "" "" sw N PSIPREDDATA data PSIPREDDB ""
editor "Path to external editor" "" "" "" "" sw N

%EVERS 1.0