## ## Make an atom selection, set the "User" fields for all atoms ## in the selection ("all" in this case since I'm too lazy to do ## something more interesting) ## set numframes [molinfo top get numframes] set sel [atomselect top "resid 10"] animate goto 1 $sel frame 1 #color resid 10 green #mol modselect 0 0 "resid 10" #mol modcolor 0 0 4 0 $sel set user 1 set sel [atomselect top "resid 14"] animate goto 2 $sel frame 2 $sel set user 1 set sel [atomselect top "resid 18"] animate goto 3 $sel frame 3 $sel set user 1 set sel [atomselect top "resid 16"] animate goto 4 $sel frame 4 $sel set user 1 set sel [atomselect top "resid 13"] animate goto 5 $sel frame 5 $sel set user 1 set sel [atomselect top "resid 15"] animate goto 6 $sel frame 6 $sel set user 1 set sel [atomselect top "resid 17 and sidechain"] animate goto 7 $sel frame 7 $sel set user 1 set sel [atomselect top "resid 19"] animate goto 8 $sel frame 8 $sel set user 1 set sel [atomselect top "resid 21 and sidechain"] animate goto 9 $sel frame 9 $sel set user 1 set sel [atomselect top "resid 18"] animate goto 10 $sel frame 10 $sel set user 1 set sel [atomselect top "resid 15"] animate goto 11 $sel frame 11 $sel set user 1 set sel [atomselect top "resid 11"] animate goto 12 $sel frame 12 $sel set user 1 set sel [atomselect top "resid 9"] animate goto 13 $sel frame 13 $sel set user 1 set sel [atomselect top "resid 12"] animate goto 14 $sel frame 14 $sel set user 1 set sel [atomselect top "resid 12"] animate goto 15 $sel frame 15 $sel set user 1 set sel [atomselect top "resid 7"] animate goto 16 $sel frame 16 $sel set user 1 set sel [atomselect top "resid 5"] animate goto 17 $sel frame 17 $sel set user 1 set sel [atomselect top "resid 2"] animate goto 18 $sel frame 18 $sel set user 1 set sel [atomselect top "resid 3"] animate goto 19 $sel frame 19 $sel set user 1 set sel [atomselect top "resid 4"] animate goto 20 $sel frame 20 $sel set user 1 set sel [atomselect top "resid 4"] animate goto 21 $sel frame 21 $sel set user 1 $sel delete ## ## change the "color by" and "trajectory" tab settings so that ## the new color values, and start it animating... ## mol modcolor 0 0 User mol colupdate 0 0 1 mol scaleminmax 0 0 0.0 4.0 #mol scaleminmax 0 0 0.0 $numframes animate forward