VMD-L Mailing List
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About this archive
Starting: Thu Dec 19 1996 - 11:40:41 CST
Ending: Fri May 17 2013 - 09:03:52 CDT
- please remove me from the list Denis Davydov (Fri May 17 2013 - 04:40:56 CDT)
- Formatting labels in script Paweł Kędzierski (Fri May 17 2013 - 04:17:59 CDT)
- dynamical network analysis on GROMACS trajectories Payman Pirzadeh (Thu May 16 2013 - 14:46:23 CDT)
- building VMD with opnempi support Vlad Cojocaru (Thu May 16 2013 - 11:00:43 CDT)
- error in merging two structures Anurag Sharma (Wed May 15 2013 - 18:38:58 CDT)
- paratool and g09 Prof. Eddie (Wed May 15 2013 - 16:13:29 CDT)
- Error when compiling plugins: tcl.h not found Daniel Lévesque (Tue May 14 2013 - 11:37:47 CDT)
- Re: Error when compiling plugins: tcl.h not found Axel Kohlmeyer (Tue May 14 2013 - 12:48:29 CDT)
- Re: Error when compiling plugins: tcl.h not found Josh Vermaas (Tue May 14 2013 - 12:38:42 CDT)
- dynamic cross correlation map Prof. Eddie (Tue May 14 2013 - 11:12:26 CDT)
- visualizing dynamic charge Dave Schall (Mon May 13 2013 - 15:20:24 CDT)
- hide/display VMD graphics primitives Chavent Mathieu (Fri May 10 2013 - 12:09:52 CDT)
- molinfo top get filename, dialogue vs. "mol new" Christopher MacDermaid (Thu May 09 2013 - 08:30:13 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Axel Kohlmeyer (Thu May 09 2013 - 09:21:27 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Christopher MacDermaid (Thu May 09 2013 - 10:32:35 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Axel Kohlmeyer (Thu May 09 2013 - 10:41:28 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Christopher MacDermaid (Thu May 09 2013 - 10:43:20 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" John Stone (Thu May 09 2013 - 10:48:49 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Christopher MacDermaid (Thu May 09 2013 - 10:59:03 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Christopher MacDermaid (Thu May 09 2013 - 10:32:35 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Mayne, Christopher G (Thu May 09 2013 - 09:52:08 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Axel Kohlmeyer (Thu May 09 2013 - 09:21:27 CDT)
- convert pdb file from angstorm to nm units Nandigana, Vishal Venkata Raghave (Tue May 07 2013 - 22:47:24 CDT)
- convert pdb file from angstorm to nm units Nandigana, Vishal Venkata Raghave (Tue May 07 2013 - 13:55:18 CDT)
- ABF tutorial: Methane-Hydration water going -> Water in gas phase? Maximilian Ebert (Fri May 03 2013 - 21:13:38 CDT)
- problem/NVIDIA 3D vision/VMD/Windows 7 Pro 64-bit/GeForce GTX680 Ming-Tsung Lee (Fri May 03 2013 - 20:59:37 CDT)
- ABF tutorial: Methane-Hydration water going -> Water in gas phase? Maximilian Ebert (Fri May 03 2013 - 20:49:33 CDT)
- Question about FFTK charge optimization procedure to CGENFF modeling Alexandre Suman de Araujo (Fri May 03 2013 - 15:40:41 CDT)
- Re: Fwd: VMD Crash with Ubuntu 12.04 LTS and NVidia 310.44 driver. DENILSON FERREIRA DE OLIVEIRA (Fri May 03 2013 - 13:36:24 CDT)
- Step 6 ffTK ligand calculation. aravind chandrasekaran (Thu May 02 2013 - 10:26:06 CDT)
- VMD Crash with Ubuntu 12.04 LTS and NVidia 310.44 driver. Aric Newton (Thu May 02 2013 - 06:17:49 CDT)
- Unable to find bond parameters for NOH P4 (ATOMS 292 294) Ф (Thu May 02 2013 - 04:14:35 CDT)
- how do I show spheres that are rotating around their centre Das, Debasish (Wed May 01 2013 - 17:33:38 CDT)
- cannot ionize coarse-grained system Ф (Wed May 01 2013 - 14:25:37 CDT)
- Tiled display setup John Hodrien (Tue Apr 30 2013 - 03:08:06 CDT)
- OpenGL problem Avisek Das (Mon Apr 29 2013 - 11:04:36 CDT)
- FFTK - Step -3 missing log file. aravind chandrasekaran (Sun Apr 28 2013 - 10:54:59 CDT)
- water in crystal yp sun (Sat Apr 27 2013 - 19:43:24 CDT)
- How to get improper dihedral list Wenhao Liu (Sat Apr 27 2013 - 15:39:56 CDT)
- "transparent" material not working Martin, Erik W (Fri Apr 26 2013 - 15:57:12 CDT)
- number of atoms changes on loading .cms file Nidhi Jatana (Fri Apr 26 2013 - 02:04:09 CDT)
- Detecting Custom "h-bonds" Salomon Turgman Cohen (Thu Apr 25 2013 - 13:13:57 CDT)
- Re: Detecting Custom "h-bonds" Josh Vermaas (Thu Apr 25 2013 - 14:51:15 CDT)
- Re: Detecting Custom "h-bonds" Salomon Turgman Cohen (Thu Apr 25 2013 - 17:15:20 CDT)
- Re: Detecting Custom "h-bonds" Salomon Turgman Cohen (Thu Apr 25 2013 - 17:49:44 CDT)
- Re: Detecting Custom "h-bonds" Josh Vermaas (Thu Apr 25 2013 - 17:53:44 CDT)
- Re: Detecting Custom "h-bonds" Salomon Turgman Cohen (Thu Apr 25 2013 - 19:02:36 CDT)
- Re: Detecting Custom "h-bonds" Salomon Turgman Cohen (Thu Apr 25 2013 - 19:12:09 CDT)
- Re: Detecting Custom "h-bonds" Josh Vermaas (Thu Apr 25 2013 - 19:07:30 CDT)
- Re: Detecting Custom "h-bonds" Josh Vermaas (Thu Apr 25 2013 - 17:39:51 CDT)
- Re: Detecting Custom "h-bonds" Salomon Turgman Cohen (Thu Apr 25 2013 - 17:15:20 CDT)
- Re: Detecting Custom "h-bonds" Josh Vermaas (Thu Apr 25 2013 - 14:51:15 CDT)
- (no subject) Lorenzo Gontrani (Wed Apr 24 2013 - 16:51:59 CDT)
- criteria for hydrogen bonds. Kristine Manibog (Tue Apr 23 2013 - 19:39:17 CDT)
- VMD: Mutator --> ASP to ASN problems Peter Murphy (Tue Apr 23 2013 - 13:40:57 CDT)
- Re: dock LW (Tue Apr 23 2013 - 03:40:47 CDT)
- problem in saving the output Sindrila Dutta Banik (Tue Apr 23 2013 - 02:22:13 CDT)
- mol options first and last Andrew Petersen (Mon Apr 22 2013 - 13:59:06 CDT)
- problem of pbc command Albert (Mon Apr 22 2013 - 01:39:37 CDT)
- how to calculate binding free energy and contribution of individual residue? yp sun (Sun Apr 21 2013 - 21:40:19 CDT)
- HEME acting unplanar Yarrow Madrona (Sun Apr 21 2013 - 17:49:21 CDT)
- how to write pbc option in python? Albert (Sun Apr 21 2013 - 11:50:19 CDT)
- ellipsoidal particles farrokh yousefi (Sun Apr 21 2013 - 10:33:18 CDT)
- (no subject) Rob (Sun Apr 21 2013 - 06:10:17 CDT)
- (no subject) Ganesh Shahane (Sun Apr 21 2013 - 02:10:12 CDT)
- VMD crashes KDE at startup Felix Rausch (Fri Apr 19 2013 - 06:41:40 CDT)
- pdb -arge magnitude coordinates Mohan maruthi sena (Fri Apr 19 2013 - 00:34:56 CDT)
- how vmd return actual vector for given atom Steven Neumann (Thu Apr 18 2013 - 10:36:50 CDT)
- Computing the transformation_matrix for best fit alignment of structures LW (Wed Apr 17 2013 - 22:54:18 CDT)
- No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 14:54:35 CDT)
- Re: No bonds in the generated psf file Josh Vermaas (Wed Apr 17 2013 - 17:34:14 CDT)
- Re: No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 17:52:16 CDT)
- Re: No bonds in the generated psf file Josh Vermaas (Wed Apr 17 2013 - 18:32:56 CDT)
- RE: No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 19:37:42 CDT)
- Re: No bonds in the generated psf file John Stone (Wed Apr 17 2013 - 20:48:35 CDT)
- Re: No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 20:59:28 CDT)
- Re: No bonds in the generated psf file John Stone (Wed Apr 17 2013 - 21:07:42 CDT)
- RE: No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 21:34:36 CDT)
- RE: No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 21:25:30 CDT)
- Re: No bonds in the generated psf file John Stone (Wed Apr 17 2013 - 21:51:14 CDT)
- RE: No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 23:33:21 CDT)
- Re: No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 17:52:16 CDT)
- Re: No bonds in the generated psf file Josh Vermaas (Wed Apr 17 2013 - 17:34:14 CDT)
- FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Research Jubilant (Wed Apr 17 2013 - 12:51:08 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Mayne, Christopher G (Wed Apr 17 2013 - 14:11:45 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Jeffrey Potoff (Wed Apr 17 2013 - 15:16:06 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Research Jubilant (Wed Apr 17 2013 - 16:54:08 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Josh Vermaas (Wed Apr 17 2013 - 17:57:01 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Research Jubilant (Wed Apr 17 2013 - 18:48:41 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Mayne, Christopher G (Wed Apr 17 2013 - 22:18:05 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Research Jubilant (Thu Apr 18 2013 - 13:03:53 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Research Jubilant (Wed Apr 17 2013 - 16:54:08 CDT)
- command line rep creation Martin, Erik W (Wed Apr 17 2013 - 11:14:26 CDT)
- SASA Algorithm? Esra Bozkurt (Wed Apr 17 2013 - 11:04:24 CDT)
- build unit cells and supercells for VASP Z (Wed Apr 17 2013 - 10:03:30 CDT)
- Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Wenhao Liu (Wed Apr 17 2013 - 01:53:12 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Mayne, Christopher G (Wed Apr 17 2013 - 08:00:26 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Wenhao Liu (Wed Apr 17 2013 - 09:17:23 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Mayne, Christopher G (Wed Apr 17 2013 - 12:26:35 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Wenhao Liu (Wed Apr 17 2013 - 12:46:20 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Mayne, Christopher G (Wed Apr 17 2013 - 12:51:05 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Wenhao Liu (Wed Apr 17 2013 - 13:11:22 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Mayne, Christopher G (Wed Apr 17 2013 - 13:14:08 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Wenhao Liu (Wed Apr 17 2013 - 13:17:42 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Mayne, Christopher G (Wed Apr 17 2013 - 08:00:26 CDT)
- VMD water box vs. CHARMM Yarrow Madrona (Tue Apr 16 2013 - 18:21:20 CDT)
- Save trr using command line Steven Neumann (Tue Apr 16 2013 - 05:31:18 CDT)
- problem about displaying hbond in periodic box yi (Tue Apr 16 2013 - 04:22:06 CDT)
- fftk - Opt-charges Carolina Penhavel de souza (Mon Apr 15 2013 - 09:40:26 CDT)
- Mouse-Add/Remove Bonds DanLiu (Mon Apr 15 2013 - 07:04:24 CDT)
- Improper parameters for CNT Anurag Sharma (Sun Apr 14 2013 - 16:30:59 CDT)
- VMD, Paratool º (Fri Apr 12 2013 - 15:40:20 CDT)
- average structure generation from trajectory Sindrila Dutta Banik (Thu Apr 11 2013 - 02:00:10 CDT)
- put the water box in a grid and traverse for the atoms in each grid Gurunath Katagi (Thu Apr 11 2013 - 01:53:45 CDT)
- parameters for PE100 chain? kerexen_at_gmail.com (Wed Apr 10 2013 - 10:41:22 CDT)
- Placing a peptide between two points Mohan maruthi sena (Wed Apr 10 2013 - 02:47:31 CDT)
- fftk source code Francesco Pietra (Wed Apr 10 2013 - 01:05:13 CDT)
- is there a way to measure the long axis of a protein or angle between domains in VMD Kristine Manibog (Wed Apr 10 2013 - 00:54:46 CDT)
- Writing povray files from a VMD trajectory Gordon S Freeman (Tue Apr 09 2013 - 14:32:07 CDT)
- Re: how to convert dcd to pdbs in command line Yarrow Madrona (Mon Apr 08 2013 - 18:42:49 CDT)
- RE: how to convert dcd to pdbs in command line peter.schmidtke_at_fr.netgrs.com (Tue Apr 09 2013 - 01:12:20 CDT)
- Re: how to convert dcd to pdbs in command line Josh Vermaas (Tue Apr 09 2013 - 09:25:07 CDT)
- RE: how to convert dcd to pdbs in command line Bennion, Brian (Tue Apr 09 2013 - 12:44:59 CDT)
- Re: how to convert dcd to pdbs in command line Yarrow Madrona (Tue Apr 09 2013 - 19:50:10 CDT)
- Re: how to convert dcd to pdbs in command line Josh Vermaas (Tue Apr 09 2013 - 20:06:05 CDT)
- Re: how to convert dcd AND ALIGN molecules then to pdbs in command line Yarrow Madrona (Wed Apr 10 2013 - 10:41:17 CDT)
- Re: how to convert dcd AND ALIGN molecules then to pdbs in command line Josh Vermaas (Wed Apr 10 2013 - 11:10:03 CDT)
- Re: how to convert dcd AND ALIGN molecules then to pdbs in command line Yarrow Madrona (Thu Apr 11 2013 - 08:25:43 CDT)
- RE: how to convert dcd AND ALIGN molecules then to pdbs in command line Bennion, Brian (Wed Apr 10 2013 - 11:52:03 CDT)
- RE: how to convert dcd AND ALIGN molecules then to pdbs in command line Yarrow Madrona (Thu Apr 11 2013 - 08:33:14 CDT)
- RE: how to convert dcd AND ALIGN molecules then to pdbs in command line Bennion, Brian (Thu Apr 11 2013 - 10:08:08 CDT)
- RE: how to convert dcd AND ALIGN molecules then to pdbs in command line Yarrow Madrona (Thu Apr 11 2013 - 12:24:41 CDT)
- Re: how to convert dcd to pdbs in command line Josh Vermaas (Tue Apr 09 2013 - 09:25:07 CDT)
- Re: how to convert dcd to pdbs in command line Anthony Cruz Balberdi (Tue Apr 09 2013 - 10:00:24 CDT)
- RE: how to convert dcd to pdbs in command line peter.schmidtke_at_fr.netgrs.com (Tue Apr 09 2013 - 01:12:20 CDT)
- Disable autobonds for LAMMPS trajectory file John Michael Alex Grime (Mon Apr 08 2013 - 17:26:12 CDT)
- Merge Protein/Small Molecule psf/pdb Zachary E Tibbs (Mon Apr 08 2013 - 16:54:52 CDT)
- Concatenate translated pdb's in to one pdb file- Writepdb is giving error Mohan maruthi sena (Mon Apr 08 2013 - 06:27:15 CDT)
- Re: Qwrap Beta Issue Jérôme Hénin (Mon Apr 08 2013 - 05:45:35 CDT)
- moving center of protien to another new center x,y,z Mohan maruthi sena (Sun Apr 07 2013 - 10:31:03 CDT)
- Moving center of protein to another center x,y,z Mohan maruthi sena (Sun Apr 07 2013 - 10:28:52 CDT)
- how to visualize water movement over trajectory Yarrow Madrona (Sat Apr 06 2013 - 20:46:00 CDT)
- Kshatresh Dutta, let's connect on LinkedIn shiyong liu (Sat Apr 06 2013 - 00:06:13 CDT)
- Solvate with a define number of water molecule Yann Fichou (Thu Apr 04 2013 - 12:54:22 CDT)
- complex buried area Felipe Merino (Wed Apr 03 2013 - 11:07:38 CDT)
- fftk - Opt. Torsion Carolina Penhavel de souza (Tue Apr 02 2013 - 17:53:54 CDT)
- Quick wrapping Jérôme Hénin (Tue Apr 02 2013 - 10:05:11 CDT)
- How to build a coiled alpha-helix shixin yang (Tue Apr 02 2013 - 09:23:44 CDT)
- generate nanotube other than CNT Sundararajan Natarajan (Tue Apr 02 2013 - 06:26:43 CDT)
- Re: generate nanotube other than CNT Axel Kohlmeyer (Tue Apr 02 2013 - 07:20:55 CDT)
- Re: generate nanotube other than CNT Sundararajan Natarajan (Tue Apr 02 2013 - 14:06:48 CDT)
- Re: generate nanotube other than CNT Axel Kohlmeyer (Mon Apr 15 2013 - 03:31:34 CDT)
- Re: generate nanotube other than CNT Sundararajan Natarajan (Mon Apr 15 2013 - 04:02:27 CDT)
- Re: generate nanotube other than CNT Axel Kohlmeyer (Mon Apr 15 2013 - 04:33:04 CDT)
- Re: generate nanotube other than CNT Sundararajan Natarajan (Mon Apr 15 2013 - 04:50:46 CDT)
- Re: generate nanotube other than CNT Sundararajan Natarajan (Tue Apr 02 2013 - 14:06:48 CDT)
- Re: generate nanotube other than CNT Axel Kohlmeyer (Tue Apr 02 2013 - 07:20:55 CDT)
- Issue in Cal. Bonded and Scan Torsion in fftk Win Liu (Mon Apr 01 2013 - 22:11:35 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk JC Gumbart (Mon Apr 01 2013 - 22:51:27 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk Win Liu (Mon Apr 01 2013 - 23:23:15 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk Win Liu (Mon Apr 01 2013 - 23:25:12 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk Axel Kohlmeyer (Tue Apr 02 2013 - 02:06:50 CDT)
- RE: Issue in Cal. Bonded and Scan Torsion in fftk JC Gumbart (Tue Apr 02 2013 - 07:39:32 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk Win Liu (Tue Apr 02 2013 - 08:53:49 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk John Stone (Tue Apr 09 2013 - 10:28:43 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk Win Liu (Mon Apr 01 2013 - 23:23:15 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk JC Gumbart (Mon Apr 01 2013 - 22:51:27 CDT)
- Exported POSCAR does not match original Steve Jensen (Mon Apr 01 2013 - 17:12:37 CDT)
- CGTools with pdb and top files WuChaofu (Mon Apr 01 2013 - 02:55:13 CDT)
- Disable display resetview Crosskey, Mark William (Sun Mar 31 2013 - 22:38:11 CDT)
- FFTK bond optimization +idlepoll request Francesco Pietra (Sun Mar 31 2013 - 13:14:38 CDT)
- Re: One same issue happened as before in fftk Win Liu (Sun Mar 31 2013 - 11:37:19 CDT)
- One same issue happened as before in fftk Win Liu (Sat Mar 30 2013 - 21:00:47 CDT)
- bug in xsfplugin [patch included] Roberto Guerra (Sat Mar 30 2013 - 19:55:43 CDT)
- transparent option sollebac (Fri Mar 29 2013 - 02:55:20 CDT)
- Re: vmd-I: remove water, protein from a dcd Axel Kohlmeyer (Thu Mar 28 2013 - 17:42:06 CDT)
- How to strip atoms from dcd in command line Yarrow Madrona (Thu Mar 28 2013 - 16:37:45 CDT)
- vmd-I: remove water, protein from a dcd Yarrow Madrona (Thu Mar 28 2013 - 15:45:02 CDT)
- Error with NAMD Energy Anurag Sharma (Thu Mar 28 2013 - 15:25:11 CDT)
- Is there a script to calculate root-mean-square thermal displacement Z.Y.Qiu (Thu Mar 28 2013 - 07:51:31 CDT)
- FFTK Update Parameter File with Optimized Parameters - fails? Paweł Kędzierski (Thu Mar 28 2013 - 06:26:15 CDT)
- Re: FFTK Update Parameter File with Optimized Parameters - fails? Mayne, Christopher G (Thu Mar 28 2013 - 08:03:11 CDT)
- Re: FFTK... and now gaussian version or QMtool problem Paweł Kędzierski (Thu Mar 28 2013 - 09:25:50 CDT)
- Re: FFTK... and now gaussian version or QMtool problem John Stone (Thu Mar 28 2013 - 09:34:50 CDT)
- Re: FFTK... and now gaussian version or QMtool problem Mayne, Christopher G (Thu Mar 28 2013 - 11:13:33 CDT)
- Re: FFTK... and now gaussian version or QMtool problem Paweł Kędzierski (Thu Mar 28 2013 - 19:23:45 CDT)
- Re: FFTK... and now gaussian version or QMtool problem Mayne, Christopher G (Thu Mar 28 2013 - 20:52:28 CDT)
- Re: FFTK... and now gaussian version or QMtool problem Paweł Kędzierski (Thu Mar 28 2013 - 09:25:50 CDT)
- Re: FFTK Update Parameter File with Optimized Parameters - fails? Mayne, Christopher G (Thu Mar 28 2013 - 08:03:11 CDT)
- Computational Electrostatics for Biological Applications (CEBA'13) July 01-03, 2013 - Genova - Italy Walter Rocchia (Wed Mar 27 2013 - 17:49:09 CDT)
- Hotkeys don't work Aaron Taudt (Wed Mar 27 2013 - 03:50:41 CDT)
- FFTK Atom types Francesco Pietra (Wed Mar 27 2013 - 02:21:13 CDT)
- making the Orient plugin available in VMD Research Jubilant (Tue Mar 26 2013 - 17:30:20 CDT)
- Re: problems aligning two simillar structures Yarrow Madrona (Tue Mar 26 2013 - 14:19:48 CDT)
- problems aligning two simillar structures Yarrow Madrona (Tue Mar 26 2013 - 14:10:38 CDT)
- FFTK plugin, Water Inter issue Francesco Pietra (Tue Mar 26 2013 - 12:15:00 CDT)
- How to generate average structure from trajectory using VMD Sindrila Dutta Banik (Tue Mar 26 2013 - 07:13:00 CDT)
- RE: Theory of backmapping of CGTools WuChaofu (Mon Mar 25 2013 - 19:04:21 CDT)
- Theory of backmapping of CGTools WuChaofu (Mon Mar 25 2013 - 07:06:07 CDT)
- Tethering, or restraining, part of a molecule during MD playback John Keller (Mon Mar 25 2013 - 00:14:44 CDT)
- Aminoacid selection Juan Antonio Raygoza Garay (Sun Mar 24 2013 - 16:51:02 CDT)
- Morse potentail with charmm 27 Francesco Pietra (Sun Mar 24 2013 - 11:04:56 CDT)
- Re: vmd-l digest V1 #2344 Amit Jaiswal (Sun Mar 24 2013 - 02:26:04 CDT)
- Topo tools: can't use non-numeric string as operand of "+" Ivan Moncayo (Fri Mar 22 2013 - 08:36:15 CDT)
- protein secondary structure Juan Antonio Raygoza Garay (Thu Mar 21 2013 - 16:42:25 CDT)
- VMD 1.9.1 for 64-bit Windows Jernej Zidar (Tue Mar 19 2013 - 21:18:11 CDT)
- phantom omni linux install Thomas C. Bishop (Tue Mar 19 2013 - 11:28:14 CDT)
- How to save a snapshot from the trajectory in amber restrt formate Sindrila Dutta Banik (Tue Mar 19 2013 - 02:47:39 CDT)
- delete segments from dcd file yp sun (Tue Mar 19 2013 - 01:12:22 CDT)
- gofr between center of mass of a functional group and solvent AnkiReddy katha (Tue Mar 19 2013 - 00:52:52 CDT)
- Amorphous Structure code or builder for non-programmer Rawan Al Nsour (Mon Mar 18 2013 - 15:20:05 CDT)
- cp: cannot stat `../LINUXAMD64/vmd_LINUXAMD64': No such file or directory Z (Mon Mar 18 2013 - 09:16:44 CDT)
- atomselect within a loop Yohann Morille (Mon Mar 18 2013 - 06:17:15 CDT)
- membrane protein embedding Ramin Ekhteiari (Wed Mar 13 2013 - 14:32:57 CDT)
- Fit function Joseph Geraci (Wed Mar 13 2013 - 14:00:55 CDT)
- using cionize Shyno Mathew (Tue Mar 12 2013 - 17:44:55 CDT)
- Calculating rdfs without the VMD gui Salvador H-V (Tue Mar 12 2013 - 14:42:57 CDT)
- Re: Calculating rdfs without the VMD gui Jérôme Hénin (Wed Mar 13 2013 - 02:36:42 CDT)
- Re: Calculating rdfs without the VMD gui Salvador H-V (Wed Mar 13 2013 - 10:37:39 CDT)
- Re: Calculating rdfs without the VMD gui Josh Vermaas (Wed Mar 13 2013 - 15:15:18 CDT)
- Re: Calculating rdfs without the VMD gui Salvador H-V (Wed Mar 13 2013 - 17:46:25 CDT)
- Re: Calculating rdfs without the VMD gui Josh Vermaas (Wed Mar 13 2013 - 19:03:32 CDT)
- Re: Calculating rdfs without the VMD gui Salvador H-V (Thu Mar 14 2013 - 08:26:32 CDT)
- Re: Calculating rdfs without the VMD gui Salvador H-V (Wed Mar 13 2013 - 10:37:39 CDT)
- Re: Calculating rdfs without the VMD gui Jérôme Hénin (Wed Mar 13 2013 - 02:36:42 CDT)
- problem related to generation of average structure from trajectory Sindrila Dutta Banik (Tue Mar 12 2013 - 14:06:20 CDT)
- namdenergy: different results for single vs multiple frames Joshua Adelman (Tue Mar 12 2013 - 11:53:01 CDT)
- clear altloc field Martin, Erik W (Mon Mar 11 2013 - 16:49:47 CDT)
- dx file format Edward Lyman (Mon Mar 11 2013 - 16:41:46 CDT)
- ~Tawhid Ezaz~ Tawhid Ezaz (Mon Mar 11 2013 - 14:57:41 CDT)
- VMD-L Mailing List: Velocity autocorrelation and spatial distribution functions David Smith (Sun Mar 10 2013 - 14:33:17 CDT)
- 'Hands-on' Workshop on Computational Biophysics using VMD, NAMD, and ProDy, June 10-14, 2013 in Pittsburgh, PA David Brandon (Fri Mar 08 2013 - 12:22:27 CST)
- Tachyon Renderer and Multiple Representations Salomon Turgman Cohen (Fri Mar 08 2013 - 09:27:21 CST)
- (no subject) Jessica Padden (Thu Mar 07 2013 - 13:05:49 CST)
- Installation Tolga Akiner (Thu Mar 07 2013 - 10:17:37 CST)
- Re: Installation John Stone (Thu Mar 07 2013 - 10:34:17 CST)
- Re: Installation tolga.akiner (Fri Mar 08 2013 - 01:11:10 CST)
- transparent material: set different opacity andrea spitaleri (Fri Mar 08 2013 - 08:19:14 CST)
- Re: transparent material: set different opacity Axel Kohlmeyer (Fri Mar 08 2013 - 09:06:06 CST)
- Re: transparent material: set different opacity andrea spitaleri (Fri Mar 08 2013 - 09:19:38 CST)
- Re: transparent material: set different opacity Josh Vermaas (Fri Mar 08 2013 - 09:18:28 CST)
- Re: Installation John Stone (Mon Mar 11 2013 - 13:06:50 CDT)
- Re: Installation tolga.akiner (Fri Mar 08 2013 - 01:11:10 CST)
- Re: Installation John Stone (Thu Mar 07 2013 - 10:34:17 CST)
- Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux Bogdan Costescu (Tue Mar 05 2013 - 14:01:21 CST)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux John Stone (Tue Mar 05 2013 - 15:27:41 CST)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux Bogdan Costescu (Fri Mar 08 2013 - 11:56:12 CST)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux John Stone (Fri Mar 08 2013 - 13:09:14 CST)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux John Stone (Fri Mar 15 2013 - 09:25:32 CDT)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux Bogdan Costescu (Mon Mar 18 2013 - 07:19:09 CDT)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux John Stone (Thu Mar 21 2013 - 10:43:25 CDT)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux Bogdan Costescu (Mon Apr 15 2013 - 05:51:10 CDT)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux John Stone (Mon Apr 15 2013 - 09:51:45 CDT)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux Bogdan Costescu (Fri Mar 08 2013 - 11:56:12 CST)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux John Stone (Tue Mar 05 2013 - 15:27:41 CST)
- Radial pair distribution function Bharath K. Srikanth (Fri Mar 01 2013 - 03:05:58 CST)
- gofr with PBC Khanal Rabi (Thu Feb 28 2013 - 19:19:06 CST)
- Amorphous Structure code or builder Rawan Al Nsour (Thu Feb 28 2013 - 14:47:14 CST)
- lammps charge data, adding bond Erik (Wed Feb 27 2013 - 19:50:07 CST)
- About PLUMED with NAMD VMD Francesco Pietra (Wed Feb 27 2013 - 02:16:28 CST)
- Problem related to the save trajectory] Sindrila Dutta Banik (Wed Feb 27 2013 - 00:35:46 CST)
- definition of single word "protein" selection Bennion, Brian (Tue Feb 26 2013 - 17:00:39 CST)
- Load a molecule in a function without output and slow Tcl gui console Maximilian Ebert (Tue Feb 26 2013 - 15:52:38 CST)
- Re: Load a molecule in a function without output and slow Tcl gui console John Stone (Tue Feb 26 2013 - 16:16:53 CST)
- Re: Load a molecule in a function without output and slow Tcl gui console Maximilian Ebert (Tue Feb 26 2013 - 16:35:54 CST)
- Re: Load a molecule in a function without output and slow Tcl gui console John Stone (Wed Feb 27 2013 - 10:34:02 CST)
- Re: Load a molecule in a function without output and slow Tcl gui console Maximilian Ebert (Wed Feb 27 2013 - 15:59:32 CST)
- Re: Load a molecule in a function without output and slow Tcl gui console John Stone (Wed Feb 27 2013 - 16:05:25 CST)
- Re: Load a molecule in a function without output and slow Tcl gui console Maximilian Ebert (Tue Feb 26 2013 - 16:35:54 CST)
- Re: Load a molecule in a function without output and slow Tcl gui console John Stone (Tue Feb 26 2013 - 16:16:53 CST)
- VMD crashes with malloc error Fahimeh Baftizadeh (Tue Feb 26 2013 - 12:42:59 CST)
- ParseFEP plugin error Bernandie Jean (Tue Feb 26 2013 - 12:11:13 CST)
- Displaying Flat Cross-Sections Using Surface Representation Robert Johnson (Tue Feb 26 2013 - 11:59:28 CST)
- Re: Displaying Flat Cross-Sections Using Surface Representation Mayne, Christopher G (Tue Feb 26 2013 - 12:58:11 CST)
- Re: Displaying Flat Cross-Sections Using Surface Representation John Stone (Tue Feb 26 2013 - 13:06:47 CST)
- Re: Displaying Flat Cross-Sections Using Surface Representation Robert Johnson (Thu Feb 28 2013 - 16:29:40 CST)
- Re: Displaying Flat Cross-Sections Using Surface Representation Robert Johnson (Thu Mar 28 2013 - 12:35:10 CDT)
- Re: Displaying Flat Cross-Sections Using Surface Representation John Stone (Thu Mar 28 2013 - 14:16:49 CDT)
- Re: Displaying Flat Cross-Sections Using Surface Representation John Stone (Tue Feb 26 2013 - 13:06:47 CST)
- Re: Displaying Flat Cross-Sections Using Surface Representation Mayne, Christopher G (Tue Feb 26 2013 - 12:58:11 CST)
- VMD Tutorial Help Nance, Sierra (Tue Feb 26 2013 - 09:07:41 CST)
- trajectory conversion: dcd to trr to xtc manali_at_bioinfo.net.in (Tue Feb 26 2013 - 03:59:34 CST)
- Can I calculate B-factor using VMD Sindrila Dutta Banik (Tue Feb 26 2013 - 01:19:10 CST)
- conversion from CHARMM27 psf to charmm36 with psfgen? Edward Lyman (Mon Feb 25 2013 - 08:37:12 CST)
- gofr with periodic boundary condition in vasp trajectory Khanal Rabi (Sun Feb 24 2013 - 19:08:17 CST)
- spectrum simulation francesco oteri (Sun Feb 24 2013 - 14:57:13 CST)
- Different output of Saltbridge calculation between Saltbridge plugin and Timeline Priyabrata Panigrahi (Sat Feb 23 2013 - 02:21:14 CST)
- measure fit rotation matrix convention Daniel Klose (Fri Feb 22 2013 - 10:16:23 CST)
- setting up the grid for periodic coulomb volmap calc Edward Lyman (Fri Feb 22 2013 - 09:19:43 CST)
- FPR monitor+glasses Marcel UJI (IMAP) (Fri Feb 22 2013 - 07:13:42 CST)
- about visualization in VMD hamid mosaddeghi (Thu Feb 21 2013 - 05:32:12 CST)
- Atom serial numbers in array format Marzieh Alishahi (Thu Feb 21 2013 - 03:26:33 CST)
- edit pdb file hamid mosaddeghi (Wed Feb 20 2013 - 18:03:13 CST)
- How to save coordinates of periodic systems skolev_at_mnet.bg (Wed Feb 20 2013 - 08:31:15 CST)
- Measuring the order parameter Rawan Al Nsour (Tue Feb 19 2013 - 11:59:31 CST)
- select by residue Jorgen Simonsen (Mon Feb 18 2013 - 11:45:55 CST)
- Surface won't close Sabine Reisser (Mon Feb 18 2013 - 09:45:38 CST)
- Spring script not working Davide Mercadante (Mon Feb 18 2013 - 07:26:13 CST)
- Problem related to the save trajectory Sindrila Dutta Banik (Mon Feb 18 2013 - 00:56:07 CST)
- porcupine plot - dynatraj server missing NG HUI WEN (Mon Feb 18 2013 - 00:18:29 CST)
- SSRestraints missing some beta sheets Charles Greenberg (Fri Feb 15 2013 - 18:57:14 CST)
- Licorice in transparent surface visualisation Sabine Reisser (Fri Feb 15 2013 - 08:57:40 CST)
- modeling rGO without ReaxFF David Cohen-Tanugi (Fri Feb 15 2013 - 08:53:15 CST)
- residency times continued Magnus Andersson (Fri Feb 15 2013 - 07:12:04 CST)
- making time lapse video Do Yong Kim (Thu Feb 14 2013 - 15:06:06 CST)
- Dynamic bonds for amorphous silicon carbide? Dave Schall (Thu Feb 14 2013 - 13:52:07 CST)
- psfread error Mohammad Elgamacy (Wed Feb 13 2013 - 08:55:03 CST)
- vmd1.9.2 alpha on windows/Mac valeria.losasso_at_stfc.ac.uk (Tue Feb 12 2013 - 10:42:01 CST)
- FW: vmd1.9.2 alpha on windows/Mac valeria.losasso_at_stfc.ac.uk (Tue Feb 12 2013 - 10:45:28 CST)
- Re: vmd1.9.2 alpha on windows/Mac John Stone (Thu Feb 14 2013 - 10:32:58 CST)
- Re: vmd1.9.2 alpha on windows/Mac John Stone (Mon Feb 25 2013 - 15:15:13 CST)
- How to display a selection from the Tk console Raul Araya (Tue Feb 12 2013 - 08:59:33 CST)
- VMD for Windows with VRPN option Stefano Ugolini (Tue Feb 12 2013 - 08:04:51 CST)
- Command not found Error Allison Rossetto (Mon Feb 11 2013 - 16:02:50 CST)
- draw structure with xyz coordinates DanLiu (Mon Feb 11 2013 - 09:46:48 CST)
- non-bonded residue-residue namdEnergy question Prof. Eddie (Mon Feb 11 2013 - 08:51:38 CST)
- problem with g(r) Ali Alizadeh (Sat Feb 09 2013 - 08:29:46 CST)
- differing particle numbers in each frame Gavin Melaugh (Fri Feb 08 2013 - 06:55:05 CST)
- Head Tracking for Desktop VR Displays using the WiiRemote and VMD Ajasja Ljubetič (Thu Feb 07 2013 - 15:48:00 CST)
- isosurface for non-orthorhombic cells Torsten Kerber (Thu Feb 07 2013 - 08:55:52 CST)
- Colouring rings in paperchain gargiulo (Wed Feb 06 2013 - 09:04:01 CST)
- same problem Albert (Tue Feb 05 2013 - 12:31:29 CST)
- Unable to re-install vmd Soumya Lipsa Rath (Mon Feb 04 2013 - 00:01:33 CST)
- delet a frame from dcd file yp sun (Sat Feb 02 2013 - 19:59:51 CST)
- making movies in vmd Payman Pirzadeh (Fri Feb 01 2013 - 01:53:05 CST)
- Problem in loading the trajectories Soumya Lipsa Rath (Thu Jan 31 2013 - 22:35:29 CST)
- Removing an installed Plug-in aneesh cna (Thu Jan 31 2013 - 00:26:49 CST)
- PYTHONPATH Word too long francesco oteri (Tue Jan 29 2013 - 09:56:21 CST)
- how to configure VMD plugin location? Albert (Tue Jan 29 2013 - 01:35:26 CST)
- NameError: name 'AtomSel' is not defined Albert (Mon Jan 28 2013 - 11:38:16 CST)
- Extracting Entropies and Enthalpies With The ParseFEP Plugin Using SOS or BAR David Huggins (Fri Jan 25 2013 - 07:41:58 CST)
- cannot open vmd ragesh c (Fri Jan 25 2013 - 00:22:50 CST)
- plugin path problem Albert (Thu Jan 24 2013 - 12:33:04 CST)
- How to split large DCD file snoze pa (Thu Jan 24 2013 - 10:50:27 CST)
- Re: namd-l: Assigning Partial Charges to FE in Active Site Superoxide Dismutase. JC Gumbart (Wed Jan 23 2013 - 14:26:59 CST)
- compiling stopped without any obvious erros Albert (Wed Jan 23 2013 - 13:00:41 CST)
- another tachyon problem Albert (Wed Jan 23 2013 - 11:15:04 CST)
- tc.h problem Albert (Wed Jan 23 2013 - 10:50:27 CST)
- Dynamic bond representations Peitong Duan (Tue Jan 22 2013 - 16:44:02 CST)
- Color scale data range for coloring by timestep Jérôme Hénin (Mon Jan 21 2013 - 08:25:37 CST)
- Fwd: namd-l: About "add solvation" Francesco Pietra (Mon Jan 21 2013 - 03:49:06 CST)
- fftk charge optimization option ehsan zahedinejad (Sat Jan 19 2013 - 19:12:06 CST)
- tachyon configuration failed Albert (Sat Jan 19 2013 - 11:52:07 CST)
- Re: tachyon configuration failed Albert (Sat Jan 19 2013 - 11:53:19 CST)
- Re: Re: tachyon configuration failed John Stone (Tue Jan 22 2013 - 11:11:39 CST)
- Re: Re: tachyon configuration failed Albert (Tue Jan 22 2013 - 11:28:08 CST)
- Re: Re: tachyon configuration failed John Stone (Tue Jan 22 2013 - 11:30:55 CST)
- Re: Re: tachyon configuration failed Albert (Wed Jan 23 2013 - 09:32:58 CST)
- Re: Re: tachyon configuration failed John Stone (Wed Jan 23 2013 - 09:38:51 CST)
- Re: Re: tachyon configuration failed Albert (Wed Jan 23 2013 - 10:11:17 CST)
- Re: Re: tachyon configuration failed John Stone (Tue Jan 22 2013 - 11:11:39 CST)
- Re: tachyon configuration failed Albert (Sat Jan 19 2013 - 11:53:19 CST)
- ied with VMD 1.9.1 Antonija Tomi (Fri Jan 18 2013 - 09:03:05 CST)
- about inorganic builder and define variable hamid mosaddeghi (Thu Jan 17 2013 - 16:19:23 CST)
- VMD-1.9.1 and TC/TK-8.6 break analysis g(r) and IR Spectral Density Calculator Benj FitzPatrick (Thu Jan 17 2013 - 14:47:11 CST)
- Re: VMD-1.9.1 and TC/TK-8.6 break analysis g(r) and IR Spectral Density Calculator John Stone (Tue Feb 26 2013 - 16:04:09 CST)
- RE: Editing in Molefacture plugin by importing pdb file Him Bandhu Upadhyay (Thu Jan 17 2013 - 11:49:41 CST)
- Editing in Molefacture plugin by importing pdb file Him Bandhu Upadhyay (Thu Jan 17 2013 - 10:36:52 CST)
- Martini RBCG denilson_at_dqi.ufla.br (Wed Jan 16 2013 - 12:18:00 CST)
- ssrestraints for determining the secondary structure of large protein complex Yujie Wu (Wed Jan 16 2013 - 05:51:36 CST)
- Variable number of steps in run command? David Cohen-Tanugi (Tue Jan 15 2013 - 10:30:55 CST)
- CG- CNT hamid mosaddeghi (Sat Jan 12 2013 - 06:05:02 CST)
- displaying charge distribution mpincu (Fri Jan 11 2013 - 15:28:51 CST)
- write new dcd after duplicating periodic images? Fatemesadat Emami (Fri Jan 11 2013 - 15:12:35 CST)
- periodic images in the hydrogen bond tool Fatemesadat Emami (Fri Jan 11 2013 - 14:15:37 CST)
- Autoionize error in VMD Shaherin Basith (Fri Jan 11 2013 - 02:06:22 CST)
- Potential memory consumption bug in VMD 1.9.1 John Jumper (Thu Jan 10 2013 - 21:08:22 CST)
- Error in loading large trajectories Esam Tolba (Thu Jan 10 2013 - 15:56:15 CST)
- VMD read wrong charges if the atom type is longer than 5 characters in PSF file Jiawei Xu (Thu Jan 10 2013 - 11:30:40 CST)
- Regarding fit_angle.tcl script Chola Regmi (Thu Jan 10 2013 - 10:45:59 CST)
- rgyr from big DCD Steven Neumann (Mon Jan 07 2013 - 05:49:58 CST)
- RE: Stride update in every frame of a trajectory? peter.schmidtke_at_fr.netgrs.com (Mon Jan 07 2013 - 03:03:13 CST)
- Stride update in every frame of a trajectory? Martin, Erik W (Sat Jan 05 2013 - 10:57:17 CST)
- how to plot per-atom field variable Wei Gao (Sat Jan 05 2013 - 10:42:53 CST)
- tcl script for vmd troubleshooting Martin, Erik W (Fri Jan 04 2013 - 11:17:30 CST)
- FW: 3D-Connexion Space Navigator for Macosx Passerone, Daniele (Fri Jan 04 2013 - 00:47:42 CST)
- How to read every second frame with bigdcd Jiawei Xu (Thu Jan 03 2013 - 11:33:31 CST)
- 'Abort file I/O' key not working aneesh cna (Fri Dec 28 2012 - 04:59:56 CST)
- about atomselect command Marzieh Alishahi (Mon Dec 24 2012 - 09:13:08 CST)
- python simple script Adrian Jasiski (Fri Dec 21 2012 - 04:52:41 CST)
- VMD not displaying represenations by line maria goranovic (Thu Dec 20 2012 - 04:48:03 CST)
- Re: VMD not displaying represenations by line John Stone (Thu Dec 20 2012 - 09:49:40 CST)
- Re: VMD not displaying represenations by line maria goranovic (Thu Dec 20 2012 - 09:53:05 CST)
- Re: VMD not displaying represenations by line John Stone (Thu Dec 20 2012 - 15:33:36 CST)
- Re: VMD not displaying represenations by line maria goranovic (Fri Dec 21 2012 - 03:19:26 CST)
- Re: VMD not displaying represenations by line maria goranovic (Thu Jan 03 2013 - 04:24:09 CST)
- Re: VMD not displaying represenations by line John Stone (Thu Jan 03 2013 - 09:59:07 CST)
- Re: VMD not displaying represenations by line maria goranovic (Thu Dec 20 2012 - 09:53:05 CST)
- Re: VMD not displaying represenations by line John Stone (Thu Dec 20 2012 - 09:49:40 CST)
- Tachyon does not capture the dark colors! Fatemesadat Emami (Wed Dec 19 2012 - 13:25:20 CST)
- Real-time Representation Changes During Interactive MD Chris Ing (Wed Dec 19 2012 - 11:36:22 CST)
- vmd 1.9.2a11macx86_64 on OSX 10.8 Raul Araya (Wed Dec 19 2012 - 07:28:33 CST)
- Gromacs index file Ignacio Fernndez Galvn (Wed Dec 19 2012 - 03:01:58 CST)
- problem of selection Albert (Wed Dec 19 2012 - 02:52:30 CST)
- Update atom labels each frame Sandeep Kumar Reddy (Wed Dec 19 2012 - 00:42:18 CST)
- How to get the coordinate of periodic images anyy zsj (Tue Dec 18 2012 - 23:58:53 CST)
- VMD 1.9.1 src // GCC 4.7.0 - Error compiling plugins directory Adam Brenner (Tue Dec 18 2012 - 19:32:00 CST)
- can vmd add protons to particular atoms? yp sun (Tue Dec 18 2012 - 00:43:01 CST)
- combine.tcl yp sun (Mon Dec 17 2012 - 08:52:24 CST)
- delete of some molecules mohammad agha (Fri Dec 14 2012 - 23:42:56 CST)
- visualizing multiframe trajectory simultaneously with multimolecule Bennion, Brian (Thu Dec 13 2012 - 11:46:18 CST)
- Re: visualizing multiframe trajectory simultaneously with multimolecule Axel Kohlmeyer (Thu Dec 13 2012 - 12:53:11 CST)
- RE: visualizing multiframe trajectory simultaneously with multimolecule Bennion, Brian (Fri Dec 14 2012 - 17:06:03 CST)
- Re: visualizing multiframe trajectory simultaneously with multimolecule Axel Kohlmeyer (Sat Dec 15 2012 - 01:07:21 CST)
- RE: visualizing multiframe trajectory simultaneously with multimolecule Bennion, Brian (Mon Dec 17 2012 - 10:19:02 CST)
- Re: visualizing multiframe trajectory simultaneously with multimolecule Axel Kohlmeyer (Mon Dec 17 2012 - 10:37:43 CST)
- RE: visualizing multiframe trajectory simultaneously with multimolecule Bennion, Brian (Fri Dec 14 2012 - 17:06:03 CST)
- Re: visualizing multiframe trajectory simultaneously with multimolecule Axel Kohlmeyer (Thu Dec 13 2012 - 12:53:11 CST)
- problem with ascribing data to the user field Pawel Siuda (Thu Dec 13 2012 - 04:48:58 CST)
- Re: visualizing certain sanpshots on top of each other Suresh (Mon Dec 10 2012 - 22:27:04 CST)
- visualizing certain sanpshots on top of each other Fatemesadat Emami (Mon Dec 10 2012 - 13:23:23 CST)
- VMD : Force Field Toolkit : Help Esra Bozkurt (Mon Dec 10 2012 - 13:21:06 CST)
- VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Tru Huynh (Mon Dec 10 2012 - 09:14:43 CST)
- Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Tru Huynh (Mon Dec 10 2012 - 09:19:55 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 John Stone (Mon Dec 10 2012 - 11:40:11 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Tru Huynh (Mon Dec 10 2012 - 14:11:53 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Tru Huynh (Mon Dec 10 2012 - 16:58:57 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Tru Huynh (Tue Dec 11 2012 - 05:10:38 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Bogdan Costescu (Tue Dec 11 2012 - 07:50:23 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 John Stone (Tue Dec 11 2012 - 08:59:37 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Tru Huynh (Thu Dec 13 2012 - 11:41:46 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 John Stone (Mon Dec 10 2012 - 11:40:11 CST)
- Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Axel Kohlmeyer (Mon Dec 10 2012 - 10:22:49 CST)
- Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Tru Huynh (Mon Dec 10 2012 - 09:19:55 CST)
- Getting volumetric map from old Insight file into VMD-readable format Tristan Croll (Sun Dec 09 2012 - 22:36:44 CST)
- VMD-CUDA crash on Mac OSX 10.8.2 James Conway (Thu Dec 06 2012 - 12:35:11 CST)
- Coloring lots of Groups Doran Bennett (Thu Dec 06 2012 - 10:25:06 CST)
- invalid command name "dict" mohammad agha (Thu Dec 06 2012 - 01:26:01 CST)
- error while loading shared libraries: libcudart.so.4 Michał Kadlof (Wed Dec 05 2012 - 19:25:26 CST)
- Default XML format Tim Moore (Wed Dec 05 2012 - 09:55:15 CST)
- Use Movie Maker Plugin in Script Aaron Taudt (Wed Dec 05 2012 - 08:40:46 CST)
- vmd invalid connection error when launched Huixi Violet Zhang (Tue Dec 04 2012 - 14:48:01 CST)
- Full-Screen display Sabine Reisser (Tue Dec 04 2012 - 06:54:47 CST)
- A problem about atomselect command in a script Z.Y.Qiu (Mon Dec 03 2012 - 22:53:30 CST)
- use volmap tool for probability density map Liyu Jin (Leo) (Sat Dec 01 2012 - 07:56:30 CST)
- Re: use volmap tool for probability density map John Stone (Sat Dec 01 2012 - 22:36:22 CST)
- unable to load cartoon represention of my peptide Shubhadip Das (Sat Dec 01 2012 - 01:49:23 CST)
- cant open .car file Erik (Fri Nov 30 2012 - 12:25:30 CST)
- Question regarding dihedral fitting using fftk ehsan zahedinejad (Fri Nov 30 2012 - 00:23:42 CST)
- delete the most recent atomselect? Fatemesadat Emami (Thu Nov 29 2012 - 14:21:23 CST)
- Setting up a Phantom Omni for use with VMD on CentOS 6 Ray, William (Thu Nov 29 2012 - 12:22:23 CST)
- How do I make sure the normals value of trinorms? javacfish (Wed Nov 28 2012 - 14:21:16 CST)
- not very helpful documentation Philippe Bopp / temporary (Wed Nov 28 2012 - 09:02:28 CST)
- (no subject) Mustafa Tekpinar (Tue Nov 27 2012 - 15:00:55 CST)
- update selection every frame not working Pawel Siuda (Mon Nov 26 2012 - 15:41:15 CST)
- compiled failed Albert (Mon Nov 26 2012 - 12:16:28 CST)
- Coarse Grained - angle/bond parameters Steven Neumann (Mon Nov 26 2012 - 10:20:33 CST)
- python script failed Albert (Mon Nov 26 2012 - 04:44:12 CST)
- 3D-Connexion Space Navigator for Macosx Passerone, Daniele (Wed Nov 21 2012 - 04:35:43 CST)
- Hole program for vmd hole tcl script Ban Arn (Tue Nov 20 2012 - 08:59:20 CST)
- Re: Hole program for vmd hole tcl script John Stone (Tue Nov 20 2012 - 10:54:38 CST)
- RE: Hole program for vmd hole tcl script Bennion, Brian (Tue Nov 20 2012 - 12:14:30 CST)
- Re: Hole program for vmd hole tcl script Ban Arn (Wed Nov 21 2012 - 04:19:09 CST)
- Re: Hole program for vmd hole tcl script Jan Brezovsky (Wed Nov 21 2012 - 05:52:37 CST)
- Re: Hole program for vmd hole tcl script Ban Arn (Wed Nov 21 2012 - 08:19:48 CST)
- Re: Hole program for vmd hole tcl script Jan Brezovsky (Wed Nov 21 2012 - 08:54:18 CST)
- RE: Hole program for vmd hole tcl script Bennion, Brian (Wed Nov 21 2012 - 10:20:21 CST)
- Re: Hole program for vmd hole tcl script Grace Brannigan (Wed Nov 21 2012 - 11:32:27 CST)
- Re: Hole program for vmd hole tcl script Jan Brezovsky (Wed Nov 21 2012 - 13:39:17 CST)
- RE: Hole program for vmd hole tcl script Bennion, Brian (Tue Nov 20 2012 - 12:14:30 CST)
- Re: Hole program for vmd hole tcl script John Stone (Tue Nov 20 2012 - 10:54:38 CST)
- Drawing Method: Lines does not display anything Clarinet (Tue Nov 20 2012 - 08:04:09 CST)
- How to calculate the Hydrogen bond strengh Ф (Tue Nov 20 2012 - 06:10:22 CST)
- [Solved]RE: molfile_plugins makefile errors Bennion, Brian (Mon Nov 19 2012 - 18:09:11 CST)
- Structural Change of DNA satya kumar (Mon Nov 19 2012 - 17:50:42 CST)
- VMD can't display new PDB secondary structure properly (pyMol, jMol can) Larry Guy (Mon Nov 19 2012 - 16:00:29 CST)
- RE: VMD can't display new PDB secondary structure properly (pyMol, jMol can) Bennion, Brian (Mon Nov 19 2012 - 17:30:19 CST)
- Re: VMD can't display new PDB secondary structure properly (pyMol, jMol can) Mayne, Christopher G (Mon Nov 19 2012 - 18:46:09 CST)
- Re: VMD can't display new PDB secondary structure properly (pyMol, jMol can) Larry Guy (Mon Nov 19 2012 - 18:52:52 CST)
- RE: VMD can't display new PDB secondary structure properly ( pyMol, jMol can). . Martin, Erik W (Mon Nov 19 2012 - 20:03:29 CST)
- Re: VMD can't display new PDB secondary structure properly ( pyMol, jMol can). . John Stone (Mon Nov 19 2012 - 21:02:20 CST)
- Re: VMD can't display new PDB secondary structure properly ( pyMol, jMol can). . Boris Steipe (Tue Nov 20 2012 - 11:20:04 CST)
- Re: VMD can't display new PDB secondary structure properly ( pyMol, jMol can). . Boris Steipe (Tue Nov 20 2012 - 14:44:53 CST)
- Re: VMD can't display new PDB secondary structure properly (pyMol, jMol can) John Stone (Mon Nov 19 2012 - 18:18:10 CST)
- RE: VMD can't display new PDB secondary structure properly (pyMol, jMol can) Bennion, Brian (Mon Nov 19 2012 - 17:30:19 CST)
- Error in RATTLE algorithm Stefan Franzen (Mon Nov 19 2012 - 15:38:05 CST)
- molfile_plugins makefile errors Bennion, Brian (Mon Nov 19 2012 - 15:24:33 CST)
- building plugins fails on tcl based plugins Bennion, Brian (Mon Nov 19 2012 - 14:59:18 CST)
- (no subject) Gert Peters (Sun Nov 18 2012 - 12:50:32 CST)
- how to measure the distance of two atoms in 1000 conformations? Ф (Sat Nov 17 2012 - 07:33:39 CST)
- Re: how to measure the distance of two atoms in 1000 conformations? Bjørnar Jensen (Mon Nov 19 2012 - 07:05:21 CST)
- Re: how to measure the distance of two atoms in 1000 conformations? Thomas Evangelidis (Mon Nov 19 2012 - 09:04:07 CST)
- VMD QMTool Martin, Erik W (Mon Nov 19 2012 - 11:42:19 CST)
- Re: VMD QMTool Mayne, Christopher G (Mon Nov 19 2012 - 13:20:06 CST)
- RE: VMD QMTool Bennion, Brian (Mon Nov 19 2012 - 14:51:36 CST)
- RE: VMD QMTool Martin, Erik W (Mon Nov 19 2012 - 19:19:23 CST)
- Re: VMD QMTool JC Gumbart (Tue Nov 20 2012 - 00:09:17 CST)
- Re: how to measure the distance of two atoms in 1000 conformations? Thomas Evangelidis (Mon Nov 19 2012 - 09:04:07 CST)
- Re: how to measure the distance of two atoms in 1000 conformations? Bjørnar Jensen (Mon Nov 19 2012 - 07:05:21 CST)
- creating SiO2 device with Inorganic Builder Marzieh Alishahi (Sat Nov 17 2012 - 02:36:22 CST)
- Typo in my previous e-mail subject. It's: "VMD" very slow on a 8400M GS laptop.... Pietro Amodeo (Sat Nov 17 2012 - 02:18:12 CST)
- MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 Pietro Amodeo (Fri Nov 16 2012 - 13:44:51 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 John Stone (Sun Nov 18 2012 - 22:25:27 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 Pietro Amodeo (Mon Nov 19 2012 - 10:25:33 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 John Stone (Mon Nov 19 2012 - 11:25:48 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 Pietro Amodeo (Mon Nov 19 2012 - 12:58:26 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 Pietro Amodeo (Mon Nov 19 2012 - 14:03:38 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 John Stone (Mon Nov 19 2012 - 18:28:54 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 Pietro Amodeo (Mon Nov 19 2012 - 20:18:27 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 Pietro Amodeo (Mon Nov 19 2012 - 10:25:33 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 John Stone (Sun Nov 18 2012 - 22:25:27 CST)
- How to label the chains in a multimer Ф (Fri Nov 16 2012 - 09:00:21 CST)
- how to delete one peptide from dimer Ф (Thu Nov 15 2012 - 07:26:22 CST)
- pbc box problem Albert (Thu Nov 15 2012 - 01:37:27 CST)
- RE: acylated and amidated parameters. Bennion, Brian (Wed Nov 14 2012 - 11:52:05 CST)
- periodicity and bonds Celia Bremer (Wed Nov 14 2012 - 10:23:18 CST)
- tc.h error while compiling vmd Bennion, Brian (Tue Nov 13 2012 - 16:00:27 CST)
- Installation error with rlwrap Matthew Barlow (Tue Nov 13 2012 - 13:41:55 CST)
- calculate HBOND George Lai (Mon Nov 12 2012 - 19:48:50 CST)
- psfgen generating incorrect dihedrals Sasha Perkins (Thu Nov 08 2012 - 16:40:39 CST)
- test VMD mailist post Erik Winardi (Thu Nov 08 2012 - 14:42:36 CST)
- Units of bond distance in vmd siladitya mukherjee (Thu Nov 08 2012 - 11:04:06 CST)
- vmd cause linux system freezes randomly Kasra Fattah (Wed Nov 07 2012 - 19:18:01 CST)
- Re: vmd cause linux system freezes randomly Kasra Fattah (Wed Nov 07 2012 - 23:03:50 CST)
- Re: vmd cause linux system freezes randomly Axel Kohlmeyer (Thu Nov 08 2012 - 00:15:21 CST)
- Re: vmd cause linux system freezes randomly Kasra Fattah (Fri Nov 09 2012 - 11:07:12 CST)
- Re: vmd cause linux system freezes randomly John Stone (Fri Nov 09 2012 - 13:32:35 CST)
- Re: vmd cause linux system freezes randomly Kasra Fattah (Mon Nov 12 2012 - 18:44:02 CST)
- Re: vmd cause linux system freezes randomly John Stone (Wed Nov 14 2012 - 22:20:11 CST)
- Re: vmd cause linux system freezes randomly Kasra Fattah (Fri Nov 16 2012 - 17:03:26 CST)
- Re: vmd cause linux system freezes randomly John Stone (Sun Nov 18 2012 - 22:21:22 CST)
- Re: vmd cause linux system freezes randomly John Stone (Mon Nov 19 2012 - 17:44:27 CST)
- Re: vmd cause linux system freezes randomly Kasra Fattah (Wed Nov 07 2012 - 23:03:50 CST)
- dihedral energy using namdenergy -regd Rajitha Tatikonda (Wed Nov 07 2012 - 06:52:20 CST)
- periodic images of molecule containing custom graphics rocfo (Wed Nov 07 2012 - 05:31:46 CST)
- vmd crashes during gromacs trr loading Roberto Gaspari (Wed Nov 07 2012 - 02:05:11 CST)
- 3rd party tools- vmd Ban Arn (Tue Nov 06 2012 - 11:46:59 CST)
- Solvating protein in water sucrose solution amin_at_imtech.res.in (Tue Nov 06 2012 - 11:01:17 CST)
- Workshop on Scientific Software Development at ICTP in Trieste Axel Kohlmeyer (Thu Nov 01 2012 - 09:39:46 CDT)
- Re: control the spacing between the dashes in the hydrogen bonding between two atoms mahesh gudem (Tue Oct 30 2012 - 07:48:21 CDT)
- Command line representation Aronica, Pietro (Mon Oct 29 2012 - 06:57:30 CDT)
- Colouring by velocity component in VMD Michael Doig (Mon Oct 29 2012 - 05:20:27 CDT)
- IMD with Novint Falcon George Patargias (Fri Oct 26 2012 - 06:01:47 CDT)
- how to extract a frame in a binary coordinate restart file format for NAMD ? Jose Borreguero (Wed Oct 24 2012 - 14:13:37 CDT)
- Secondary structure analysis ngpntm_at_gmail.com (Wed Oct 24 2012 - 05:44:33 CDT)
- Error in reading data file prakhar gupta (Tue Oct 23 2012 - 08:50:50 CDT)
- Units reported by VMD SASA ??? Germn Andrs Mio (Mon Oct 22 2012 - 19:06:35 CDT)
- Re: Re: how to make separate molecule whole? Axel Kohlmeyer (Sun Oct 21 2012 - 23:20:57 CDT)
- Re: how to make separate molecule whole? Axel Kohlmeyer (Sun Oct 21 2012 - 11:06:32 CDT)
- Visualizing phonon displacement patterns from axsf format forces? Ijs Mari (Sun Oct 21 2012 - 01:46:49 CDT)
- calculate end-to-end distance with trajectory files Eric Lovejoy (Sat Oct 20 2012 - 16:44:13 CDT)
- VMD (and NAMD) fail to read simple AMBER prmtop file (and it's not the SCEE and SCNB flags) Jose Borreguero (Sat Oct 20 2012 - 15:57:16 CDT)
- Selecting waters between two given distances from a particular point Sajeewa Pemasinghe (Fri Oct 19 2012 - 21:13:57 CDT)
- Application Error message during dihedral optimization using FFTK Him Bandhu Upadhyay (Thu Oct 18 2012 - 21:53:45 CDT)
- how to put command line arguments in tcl script Vikas Varshney (Thu Oct 18 2012 - 14:30:52 CDT)
- duplicating an equilibrated system with psfgen Gianluca Lattanzi (Wed Oct 17 2012 - 11:11:09 CDT)
- Graphic card Han Hu (Wed Oct 17 2012 - 08:27:40 CDT)
- postdoc position available JC Gumbart (Tue Oct 16 2012 - 00:47:41 CDT)
- pick center with tcl text command Yi Shang (Mon Oct 15 2012 - 11:59:59 CDT)
- coloring atoms based on max bond length; Need help with bond retrieval Vikas Varshney (Mon Oct 15 2012 - 10:53:26 CDT)
- Re: coloring atoms based on max bond length; Need help with bond retrieval Axel Kohlmeyer (Mon Oct 15 2012 - 14:12:33 CDT)
- Re: coloring atoms based on max bond length; Need help with bond retrieval Vikas Varshney (Tue Oct 16 2012 - 10:11:24 CDT)
- Re: coloring atoms based on max bond length; Need help with bond retrieval Axel Kohlmeyer (Tue Oct 16 2012 - 10:33:57 CDT)
- Re: coloring atoms based on max bond length; Need help with bond retrieval Vikas Varshney (Tue Oct 16 2012 - 11:51:51 CDT)
- Re: coloring atoms based on max bond length; Need help with bond retrieval Vikas Varshney (Tue Oct 16 2012 - 13:37:55 CDT)
- Re: coloring atoms based on max bond length; Need help with bond retrieval Vikas Varshney (Tue Oct 16 2012 - 10:11:24 CDT)
- Re: coloring atoms based on max bond length; Need help with bond retrieval Axel Kohlmeyer (Mon Oct 15 2012 - 14:12:33 CDT)
- VRPN driver for Novint Falcon haptic device available - Looking for Testers Marcos Ackel (Sun Oct 14 2012 - 12:31:59 CDT)
- problem of VMD-1.91 in MacOS10.8 Albert (Sat Oct 13 2012 - 11:09:44 CDT)
- secondary structure calculations Bennion, Brian (Thu Oct 11 2012 - 18:16:25 CDT)
- Error message -" cannot find NAMD binary files" during parameterization using FFTK plugin. Him Bandhu Upadhyay (Thu Oct 11 2012 - 12:41:59 CDT)
- Problem in invoking VMD P A Deshpande (Mon Oct 08 2012 - 10:27:00 CDT)
- Heat mapper Esam Tolba (Mon Oct 08 2012 - 05:53:04 CDT)
- VMD on Mac OS X, converter problem DanLiu (Mon Oct 08 2012 - 02:44:56 CDT)
- Coloring bonds in VMD Mingchao Wang (Mon Oct 08 2012 - 01:24:21 CDT)
- Script for reading Gaussian 09 MD file? John Keller (Fri Oct 05 2012 - 17:06:49 CDT)
- Visualizing DNA Damage satya kumar (Fri Oct 05 2012 - 14:40:05 CDT)
- Lennard-Jones parameters of rubidium Abolfazl Bayat (Fri Oct 05 2012 - 10:44:19 CDT)
- adding 3rdparty plugins in VMD-1.9.1 Ban Arn (Fri Oct 05 2012 - 07:00:11 CDT)
- Heat mapper Esam Tolba (Thu Oct 04 2012 - 16:42:25 CDT)
- Rendering "draw text" in Povray Joshua D. Moore (Thu Oct 04 2012 - 12:12:32 CDT)
- Persistent troubles with tk fonts Vlastimil Zíma (Thu Oct 04 2012 - 04:07:03 CDT)
- Fw: VMD compile on windows (where is windows.h?) Marcos Ackel (Wed Oct 03 2012 - 13:48:45 CDT)
- compiling VMD with gcc 4.7 Vlad Cojocaru (Wed Oct 03 2012 - 09:37:45 CDT)
- VMD compile on windows (where is windows.h?) Marcos Ackel (Tue Oct 02 2012 - 15:17:48 CDT)
- regarding representations, resolution and length of trajectory movies Derya Meral (Tue Oct 02 2012 - 13:00:54 CDT)
- Lennard-Jones parameters Abolfazl Bayat (Tue Oct 02 2012 - 10:28:38 CDT)
- question about fftk Carolina Penhavel de souza (Tue Oct 02 2012 - 08:26:12 CDT)
- writing Gaussian input files in FFTK ..... Him Bandhu Upadhyay (Mon Oct 01 2012 - 12:40:44 CDT)
- Fwd: RE:psfgen and CG lloyd riggs (Mon Oct 01 2012 - 12:10:05 CDT)
- RE:psfgen and CG lloyd riggs (Mon Oct 01 2012 - 11:39:43 CDT)
- Solvated outside the box Steven Neumann (Mon Oct 01 2012 - 02:58:44 CDT)
- Support for Retina displays? FX (Sun Sep 30 2012 - 05:40:23 CDT)
- Radius of gyration from Big DCD flavio seixas (Thu Sep 27 2012 - 14:08:31 CDT)
- Color atoms Ivan Moncayo (Thu Sep 27 2012 - 11:59:32 CDT)
- IMD and AutoIMD bug when releasing forces on residues? William Ray (Thu Sep 27 2012 - 09:57:52 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? John Stone (Thu Sep 27 2012 - 10:15:08 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Thu Sep 27 2012 - 10:51:44 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Thu Sep 27 2012 - 14:21:31 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Thu Sep 27 2012 - 15:13:03 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? John Stone (Sun Sep 30 2012 - 16:50:11 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Mon Oct 01 2012 - 10:09:39 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? John Stone (Mon Oct 01 2012 - 10:23:45 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Fri Oct 05 2012 - 12:41:42 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? John Stone (Thu Oct 18 2012 - 10:36:25 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Mon Oct 22 2012 - 11:15:38 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Thu Sep 27 2012 - 13:09:55 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Thu Sep 27 2012 - 10:51:44 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? John Stone (Thu Sep 27 2012 - 10:15:08 CDT)
- Re: Get objects from precompiled VMD? Axel Kohlmeyer (Thu Sep 27 2012 - 06:11:16 CDT)
- Get objects from precompiled VMD? Sabine Reisser (Thu Sep 27 2012 - 04:32:01 CDT)
- High Bound charge values missing during charge optimization in FFTK Him Bandhu Upadhyay (Wed Sep 26 2012 - 22:32:44 CDT)
- Convergence of the Gram-Charlier expansion Ali Khanlarkhani (Wed Sep 26 2012 - 10:36:37 CDT)
- Big DCD file help flavio seixas (Tue Sep 25 2012 - 10:16:29 CDT)
- Big DCD file flavio seixas (Tue Sep 25 2012 - 07:37:40 CDT)
- Lammps simulation Ivan Moncayo (Mon Sep 24 2012 - 11:39:06 CDT)
- Linking Error on Mac OS X Stephen Herbein (Mon Sep 24 2012 - 10:45:25 CDT)
- Printing accessible hydrophobic surface area Sabine Reisser (Mon Sep 24 2012 - 09:41:04 CDT)
- Extracting chi angles / Saving coordinate with a script Jon (Mon Sep 24 2012 - 03:56:59 CDT)
- Getting trajectories from DCD files? Venkata Mandala (Sun Sep 23 2012 - 13:48:30 CDT)
- changing name of N and C term residues Martin, Erik W (Fri Sep 21 2012 - 10:23:12 CDT)
- Re: VMD in Linux, assigning a variable using awk Axel Kohlmeyer (Thu Sep 20 2012 - 14:40:52 CDT)
- VMD in Linux, assigning a variable using awk Joshua D. Moore (Thu Sep 20 2012 - 13:44:04 CDT)
- Use of topotools kirtana S (Thu Sep 20 2012 - 00:13:47 CDT)
- Name selections Prof. Eddie (Wed Sep 19 2012 - 13:23:33 CDT)
- Color code the structure by RMSF values Esam Tolba (Wed Sep 19 2012 - 11:40:26 CDT)
- compiling vmd with g++-4.6 on ubuntu Sandeep Gupta (Wed Sep 19 2012 - 06:45:55 CDT)
- Reading trajectories from FMO-MD run Rasoul Nasiri (Wed Sep 19 2012 - 05:00:20 CDT)
- How to create strong bond between atoms in VMD ragesh c (Wed Sep 19 2012 - 04:24:38 CDT)
- How to create strong bond between atoms in VMD ragesh c (Wed Sep 19 2012 - 04:22:41 CDT)
- Q-chem MD output with VMD? John Keller (Wed Sep 19 2012 - 01:53:38 CDT)
- Hello hanif mahboobi (Tue Sep 18 2012 - 18:41:20 CDT)
- (no subject) ragesh c (Tue Sep 18 2012 - 12:22:58 CDT)
- Using Tools (grab, tug, etc) Marcos Ackel (Mon Sep 17 2012 - 13:53:51 CDT)
- Re: Using Tools (grab, tug, etc) John Stone (Tue Sep 18 2012 - 14:40:12 CDT)
- Re: Using Tools (grab, tug, etc) Marcos Ackel (Tue Sep 18 2012 - 15:17:01 CDT)
- Re: Using Tools (grab, tug, etc) Marcos Ackel (Wed Sep 19 2012 - 20:14:01 CDT)
- Re: Using Tools (grab, tug, etc) John Stone (Thu Sep 20 2012 - 16:55:13 CDT)
- Re: Using Tools (grab, tug, etc) Marcos Ackel (Thu Sep 20 2012 - 22:23:02 CDT)
- Re: Using Tools (grab, tug, etc) Marcos Ackel (Mon Sep 24 2012 - 18:40:35 CDT)
- Re: Using Tools (grab, tug, etc) John Stone (Tue Sep 25 2012 - 16:40:49 CDT)
- Re: Using Tools (grab, tug, etc) Marcos Ackel (Wed Sep 26 2012 - 15:43:19 CDT)
- Re: Using Tools (grab, tug, etc) Marcos Ackel (Sun Oct 14 2012 - 12:42:38 CDT)
- Re: Using Tools (grab, tug, etc) John Stone (Tue Oct 02 2012 - 16:56:55 CDT)
- Re: Using Tools (grab, tug, etc) John Stone (Tue Sep 18 2012 - 14:40:12 CDT)
- APBS location in vmdrc ? Sabine Reisser (Mon Sep 17 2012 - 10:51:52 CDT)
- VMD_waterbox Shomesankar Bhunia (Sun Sep 16 2012 - 23:23:59 CDT)
- How to disable CUDA in VMD 1.9.1? Joakim Swedberg (Sun Sep 16 2012 - 21:48:38 CDT)
- Invitation to connect on LinkedIn gorka lasso via LinkedIn (Sat Sep 15 2012 - 12:05:12 CDT)
- Determining the Size of my Molecule Marc Gordon (Sat Sep 15 2012 - 07:15:28 CDT)
- ERROR) Unable to change color name Teich-McGoldrick, Stephanie (Fri Sep 14 2012 - 16:40:04 CDT)
- Hello rainy908_at_yahoo.com (Fri Sep 14 2012 - 04:17:41 CDT)
- Hi rainy908_at_yahoo.com (Fri Sep 14 2012 - 02:48:50 CDT)
- problem showing lammps dump files luoyuan Q (Thu Sep 13 2012 - 21:18:29 CDT)
- Duplicate option in fftk ehsan zahedinejad (Thu Sep 13 2012 - 18:53:39 CDT)
- (no subject) rainy908_at_yahoo.com (Wed Sep 12 2012 - 23:43:19 CDT)
- problem loading LAMMPS trajectory using VMD Li, Yanfei (Wed Sep 12 2012 - 22:50:20 CDT)
- (no subject) rainy908_at_yahoo.com (Wed Sep 12 2012 - 14:05:37 CDT)
- (no subject) rainy908 (Wed Sep 12 2012 - 11:55:53 CDT)
- MDFF and implicit solvent Gorka Lasso (Wed Sep 12 2012 - 10:54:01 CDT)
- (no subject) rainy908_at_yahoo.com (Tue Sep 11 2012 - 23:53:20 CDT)
- tutorial BIO MED (Tue Sep 11 2012 - 03:53:07 CDT)
- Protein line chain in water spehere Steven Neumann (Mon Sep 10 2012 - 09:45:42 CDT)
- SpaceNavigator: How can I grab a molecule? MVACKEL (Sat Sep 08 2012 - 08:59:35 CDT)
- Question about generating a .js file Ganesh Kamath (Fri Sep 07 2012 - 09:57:39 CDT)
- APBS automation with VMD Martin, Erik W (Fri Sep 07 2012 - 09:41:54 CDT)
- How to use the Grab (or Tug) Tool Marcos Ackel (Wed Sep 05 2012 - 14:10:09 CDT)
- Largest published IMD (interactive simulation) examples? Marc Baaden (Tue Sep 04 2012 - 12:02:10 CDT)
- Invitation to connect on LinkedIn Violina Sharma via LinkedIn (Tue Sep 04 2012 - 09:05:40 CDT)
- a basic question on binding energy Ф (Mon Sep 03 2012 - 08:51:01 CDT)
- Question about reflecting wall in NAMD Ganesh Kamath (Fri Aug 31 2012 - 09:21:29 CDT)
- NAMD 2.8 and PLUMED 1.3 candy deck (Thu Aug 30 2012 - 07:23:27 CDT)
- Text-mode VMD David Minh (Wed Aug 29 2012 - 13:17:18 CDT)
- Question regarding FEP parameters snoze pa (Wed Aug 29 2012 - 13:05:15 CDT)
- pbc wrap question Daniel Klose (Mon Aug 27 2012 - 03:22:04 CDT)
- Possible handle leak in 'measure gofr' VMD 1.9.1 Windows (no cuda) Sam Wallace (Sun Aug 26 2012 - 06:52:39 CDT)
- Re: Possible handle leak in 'measure gofr' VMD 1.9.1 Windows (no cuda) Axel Kohlmeyer (Sun Aug 26 2012 - 08:05:00 CDT)
- Re: Possible handle leak in 'measure gofr' VMD 1.9.1 Windows (no cuda) John Stone (Sun Aug 26 2012 - 21:33:39 CDT)
- Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Him Bandhu Upadhyay (Thu Aug 23 2012 - 21:01:05 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Wang Yi (Thu Aug 23 2012 - 21:57:27 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Chris Harrison (Thu Aug 23 2012 - 22:34:20 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE John Stone (Thu Aug 23 2012 - 22:42:19 CDT)
- RE: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Him Bandhu Upadhyay (Thu Aug 23 2012 - 22:47:39 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Mayne, Christopher G (Fri Aug 24 2012 - 08:52:15 CDT)
- RE: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Him Bandhu Upadhyay (Fri Aug 24 2012 - 15:41:13 CDT)
- RE: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Him Bandhu Upadhyay (Tue Sep 04 2012 - 15:59:30 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE John Stone (Fri Sep 07 2012 - 17:04:52 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE John Stone (Thu Sep 20 2012 - 16:57:27 CDT)
- RE: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Him Bandhu Upadhyay (Thu Aug 23 2012 - 22:44:30 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Chris Harrison (Thu Aug 23 2012 - 22:47:10 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE John Stone (Fri Sep 21 2012 - 16:45:40 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Chris Harrison (Thu Aug 23 2012 - 22:34:20 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Chris Harrison (Thu Aug 23 2012 - 22:00:46 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Wang Yi (Thu Aug 23 2012 - 21:57:27 CDT)
- shift the molecules via VMD oguz gurbulak (Thu Aug 23 2012 - 05:11:18 CDT)
- RDF COM Bhanita Sharma (Thu Aug 23 2012 - 00:28:56 CDT)
- Error while running NAMD after using patch in psfgen Ganesh Kamath (Wed Aug 22 2012 - 15:16:14 CDT)
- obtaining the axis of a helix vitalini_at_zedat.fu-berlin.de (Wed Aug 22 2012 - 10:21:23 CDT)
- VolMap Tool coulombmsm - with periodic boundary conditions Bjrnar Jensen (Wed Aug 22 2012 - 06:19:08 CDT)
- (no subject) ragesh c (Wed Aug 22 2012 - 05:18:37 CDT)
- The err happens when movie maker Renderer POV-Ray javacfish (Wed Aug 22 2012 - 04:01:23 CDT)
- beta column in a multiseq sequences alignment Pablo Villalobos Navarro (Tue Aug 21 2012 - 18:21:07 CDT)
- Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Tue Aug 21 2012 - 11:06:01 CDT)
- Re: Error building VMD plugins from CVS 21.08.2012 John Stone (Tue Aug 21 2012 - 12:02:06 CDT)
- Re: Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Wed Aug 22 2012 - 04:41:21 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 John Stone (Wed Aug 22 2012 - 09:34:30 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Wed Aug 22 2012 - 09:49:16 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 John Stone (Wed Aug 22 2012 - 10:12:30 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Wed Aug 22 2012 - 10:16:36 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Thu Aug 23 2012 - 03:00:56 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Thu Aug 23 2012 - 07:24:39 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 John Stone (Thu Aug 23 2012 - 09:41:42 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Fri Aug 24 2012 - 07:15:31 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 John Stone (Fri Aug 24 2012 - 09:51:53 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Fri Aug 24 2012 - 10:09:25 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 John Stone (Wed Aug 22 2012 - 09:34:30 CDT)
- main menu rests to top molecule after each double click in a list of molecules Vlad Cojocaru (Tue Aug 21 2012 - 10:14:38 CDT)
- writing a psf with bonds Joaquim Rui de Castro Rodrigues (Mon Aug 20 2012 - 14:13:34 CDT)
- FLTK fonts GUIXA GONZALEZ, RAMON (Sun Aug 19 2012 - 09:26:24 CDT)
- CHARMM36 topology files, AutoPSF and DNA Law, Yu Kay (Fri Aug 17 2012 - 10:20:26 CDT)
- multiple residues with same resid and problem with solvation using VMD AnkiReddy katha (Fri Aug 17 2012 - 06:36:59 CDT)
- select grafted chains in nanoparticle simao.pereira_at_di3.units.it (Thu Aug 16 2012 - 11:04:47 CDT)
- how to get interaction energy bond.james (Wed Aug 15 2012 - 07:50:11 CDT)
- how to get interaction energy bond.james (Wed Aug 15 2012 - 06:04:29 CDT)
- Cartesian coordinates to polar coordinates Ganesh Kamath (Tue Aug 14 2012 - 17:20:30 CDT)
- VMD 1.9.1 on Macosx Snow Leopard: items greyed out Passerone, Daniele (Tue Aug 14 2012 - 04:14:17 CDT)
- creating a modified pdb/psf file Sean T Kigerl (Tue Aug 14 2012 - 00:43:26 CDT)
- Failure getting correct charge on the system Francesco Pietra (Mon Aug 13 2012 - 02:34:56 CDT)
- pleaseme help how to build Metal ion topology file conneted aramice Malkhasian (Sat Aug 11 2012 - 01:50:05 CDT)
- long bonds in surface structure is not shown in vmd !? Fatemesadat Emami (Fri Aug 10 2012 - 19:28:42 CDT)
- how add new plugin to vmd hamid mosaddeghi (Fri Aug 10 2012 - 15:17:20 CDT)
- RMSF plugin to share flavio seixas (Fri Aug 10 2012 - 11:37:42 CDT)
- SASA Algorithm?? Jeremy Lucid (Fri Aug 10 2012 - 04:46:27 CDT)
- convert dcd to coordinate, each frame, conserving the identity fabrizio.benedetti_at_unil.ch (Fri Aug 10 2012 - 02:23:30 CDT)
- Convert CHARMM psf to X-PLOR Monika Madhavi (Fri Aug 10 2012 - 01:04:08 CDT)
- how to write topology for Metal in protein aramice Malkhasian (Thu Aug 09 2012 - 17:28:33 CDT)
- B-factor plugin flavio seixas (Thu Aug 09 2012 - 14:13:26 CDT)
- Selecting based on parameters from another file Nate Hurley (Thu Aug 09 2012 - 11:22:02 CDT)
- unique residue names Jim Kress (Thu Aug 09 2012 - 10:47:33 CDT)
- topology file for metal in the protein aramice Malkhasian (Thu Aug 09 2012 - 10:12:43 CDT)
- unique residue names Jim Kress (Thu Aug 09 2012 - 09:55:42 CDT)
- Showing frame number on display? Bryan Roessler (Wed Aug 08 2012 - 12:04:58 CDT)
- 3D projectors compatible with VMD. Diego Gomes (Tue Aug 07 2012 - 20:43:23 CDT)
- Creating surfaces with desired lengths- Inorganic Builder Monika Madhavi (Mon Aug 06 2012 - 23:26:37 CDT)
- ESPResSo Summer School Olaf Lenz (Mon Aug 06 2012 - 09:10:22 CDT)
- connect a spring between all the atoms present in pdb structure SONY kaur (Sat Aug 04 2012 - 04:31:42 CDT)
- Re: namd-l: How to create psf for graphene Monika Madhavi (Sat Aug 04 2012 - 01:04:24 CDT)
- problem with polygon file conversion to pdb Oliver Schmetzer (Fri Aug 03 2012 - 11:33:21 CDT)
- Setting molecule ColorID to values greater than 32 Nate Hurley (Thu Aug 02 2012 - 13:36:02 CDT)
- Creating psf file for graphene sheet Monika Madhavi (Thu Aug 02 2012 - 04:10:07 CDT)
- (no subject) DUCHER Roland (Thu Aug 02 2012 - 04:09:33 CDT)
- missing terminal residues while generating side chain atoms by psfgen MeiShan Lin (Wed Aug 01 2012 - 13:36:51 CDT)
- how to generate .pdb file of graphene in VMD(nanotube builder) ragesh c (Wed Aug 01 2012 - 04:45:23 CDT)
- VMD 1.9.1 python interpreter Carolyn Phillips (Tue Jul 31 2012 - 18:54:23 CDT)
- Loop through atoms in a molecule Gamot, Ritchie (Tue Jul 31 2012 - 06:51:52 CDT)
- SpaceNavigator on Win7 64 bit James Ryley (Mon Jul 30 2012 - 20:53:14 CDT)
- Question about H-bond plugin flavio seixas (Mon Jul 30 2012 - 15:36:06 CDT)
- Representation Selections Joshua Engelman (Mon Jul 30 2012 - 14:47:57 CDT)
- Minor error in VMD PSF parser for atom charges Tristan Croll (Sat Jul 28 2012 - 19:53:08 CDT)
- RE: possible problem with graphics rep gui under with large numbers of molecules Bennion, Brian (Fri Jul 27 2012 - 12:41:51 CDT)
- APBS plugin requires molecule renaming after drag and drop loading of .pqr file Christopher Neale (Thu Jul 26 2012 - 21:03:35 CDT)
- VMD compilation 64 bits Ivan Moncayo (Wed Jul 25 2012 - 12:03:49 CDT)
- Dowser files and manual Sebastin Gutirrez (Tue Jul 24 2012 - 18:50:37 CDT)
- attaching an arbitrary surface molecule to a nanopore Sean T Kigerl (Tue Jul 24 2012 - 14:25:06 CDT)
- Search options within mailing list Monika Madhavi (Tue Jul 24 2012 - 13:22:02 CDT)
- Charmm FF parameter file for 2-hydroxypyridine Him Bandhu Upadhyay (Tue Jul 24 2012 - 13:10:30 CDT)
- Re: FW: difficulty in viewing AMBER mdcrd files Mahendra B Thapa (Tue Jul 24 2012 - 12:38:00 CDT)
- Question about Drude polarizable model Ganesh Kamath (Tue Jul 24 2012 - 11:19:03 CDT)
- (no subject) Monika Madhavi (Tue Jul 24 2012 - 10:20:54 CDT)
- iOS support? Samuel Schlachter (Tue Jul 24 2012 - 09:59:51 CDT)
- Scripting API: are arguments to representation types documented somewhere? Jan-Philip Gehrcke (Tue Jul 24 2012 - 07:58:04 CDT)
- (no subject) Monika Madhavi (Tue Jul 24 2012 - 07:53:40 CDT)
- molefacture selection Reza Khalkhali (Tue Jul 24 2012 - 07:44:50 CDT)
- Generating PSF for 1JNO.pdb chain A Ramin Ekhteiari (Tue Jul 24 2012 - 06:57:42 CDT)
- converting Desmond trajectory and energy file to gromacs Nidhi Jatana (Tue Jul 24 2012 - 04:53:48 CDT)
- vmd 1.9.1 Centos oguz gurbulak (Tue Jul 24 2012 - 04:12:29 CDT)
- VolMap. mass weighted densities raunest (Tue Jul 24 2012 - 04:05:43 CDT)
- (no subject) Monika Madhavi (Mon Jul 23 2012 - 13:51:19 CDT)
- (no subject) Monika Madhavi (Mon Jul 23 2012 - 09:04:15 CDT)
- Problem with Reading GROMACS file in VMD satya kumar (Sun Jul 22 2012 - 22:06:42 CDT)
- Re: Problem with Reading GROMACS file in VMD Axel Kohlmeyer (Sun Jul 22 2012 - 23:46:35 CDT)
- Re: Problem with Reading GROMACS file in VMD satya kumar (Mon Jul 23 2012 - 12:24:20 CDT)
- Re: Problem with Reading GROMACS file in VMD Axel Kohlmeyer (Mon Jul 23 2012 - 12:42:50 CDT)
- Re: Problem with Reading GROMACS file in VMD John Stone (Mon Jul 23 2012 - 14:12:02 CDT)
- Re: Problem with Reading GROMACS file in VMD Bogdan Costescu (Tue Jul 24 2012 - 04:02:59 CDT)
- Re: Problem with Reading GROMACS file in VMD satya kumar (Tue Jul 24 2012 - 06:49:55 CDT)
- Re: Problem with Reading GROMACS file in VMD Bogdan Costescu (Tue Jul 24 2012 - 07:11:04 CDT)
- Re: Problem with Reading GROMACS file in VMD satya kumar (Tue Jul 24 2012 - 07:21:24 CDT)
- Re: Problem with Reading GROMACS file in VMD Bogdan Costescu (Tue Jul 24 2012 - 08:19:48 CDT)
- Re: Problem with Reading GROMACS file in VMD Bogdan Costescu (Tue Jul 24 2012 - 11:39:55 CDT)
- Re: Problem with Reading GROMACS file in VMD Bogdan Costescu (Tue Jul 24 2012 - 11:42:02 CDT)
- Re: Problem with Reading GROMACS file in VMD satya kumar (Tue Jul 24 2012 - 11:46:07 CDT)
- Re: Problem with Reading GROMACS file in VMD satya kumar (Fri Jul 27 2012 - 14:11:29 CDT)
- RE: Problem with Reading GROMACS file in VMD Jim Kress (Tue Jul 24 2012 - 09:09:37 CDT)
- Re: Problem with Reading GROMACS file in VMD satya kumar (Tue Jul 24 2012 - 10:11:19 CDT)
- Re: Problem with Reading GROMACS file in VMD John Stone (Tue Jul 31 2012 - 11:23:19 CDT)
- Re: Problem with Reading GROMACS file in VMD satya kumar (Mon Jul 23 2012 - 12:24:20 CDT)
- Re: Problem with Reading GROMACS file in VMD Axel Kohlmeyer (Sun Jul 22 2012 - 23:46:35 CDT)
- Python plans Caio Silva Souza (Sat Jul 21 2012 - 18:47:13 CDT)
- Re: Python plans John Stone (Tue Jul 24 2012 - 11:48:52 CDT)
- Re: Python plans Olaf Lenz (Wed Jul 25 2012 - 03:07:49 CDT)
- Re: Python plans Caio Silva Souza (Thu Jul 26 2012 - 14:40:40 CDT)
- Re: Python plans Olaf Lenz (Fri Jul 27 2012 - 01:36:50 CDT)
- Re: Python plans Axel Kohlmeyer (Fri Jul 27 2012 - 02:39:48 CDT)
- Re: Python plans John Stone (Fri Jul 27 2012 - 11:32:07 CDT)
- Re: Python plans John Stone (Fri Jul 27 2012 - 11:26:23 CDT)
- Re: Python plans Caio Silva Souza (Fri Jul 27 2012 - 12:19:07 CDT)
- Re: Python plans John Stone (Fri Jul 27 2012 - 12:30:16 CDT)
- Re: Python plans Caio Silva Souza (Fri Jul 27 2012 - 12:46:27 CDT)
- Re: Python plans John Stone (Fri Jul 27 2012 - 12:51:58 CDT)
- Re: Python plans John Stone (Fri Jul 27 2012 - 11:25:26 CDT)
- Re: Python plans John Stone (Wed Aug 01 2012 - 10:46:26 CDT)
- Re: Python plans Olaf Lenz (Wed Jul 25 2012 - 03:07:49 CDT)
- Re: Python plans John Stone (Tue Jul 24 2012 - 11:48:52 CDT)
- RE: Joining DCD files with overlapping frames amin_at_imtech.res.in (Fri Jul 20 2012 - 05:21:58 CDT)
- RE: Joining DCD files with overlapping frames. JC Gumbart (Fri Jul 20 2012 - 01:40:50 CDT)
- Joining DCD files with overlapping frames. amin_at_imtech.res.in (Thu Jul 19 2012 - 21:53:08 CDT)
- VMD's superposition algorithm Vctor (Thu Jul 19 2012 - 05:06:29 CDT)
- constant velocity for carbon nanotubes bond.james (Wed Jul 18 2012 - 21:38:48 CDT)
- namdEnergy doesn't run on clusters Wang Yi (Tue Jul 17 2012 - 22:28:06 CDT)
- Re: namdEnergy doesn't run on clusters John Stone (Wed Jul 18 2012 - 09:46:30 CDT)
- Re: namdEnergy doesn't run on clusters John Stone (Wed Jul 18 2012 - 10:47:17 CDT)
- Re: namdEnergy doesn't run on clusters Wang Yi (Wed Jul 18 2012 - 09:55:37 CDT)
- Re: namdEnergy doesn't run on clusters John Stone (Wed Jul 18 2012 - 10:04:01 CDT)
- Re: namdEnergy doesn't run on clusters Wang Yi (Wed Jul 18 2012 - 10:17:52 CDT)
- Re: namdEnergy doesn't run on clusters John Stone (Wed Jul 18 2012 - 10:23:49 CDT)
- Re: namdEnergy doesn't run on clusters Wang Yi (Wed Jul 18 2012 - 10:31:17 CDT)
- Re: namdEnergy doesn't run on clusters John Stone (Wed Jul 18 2012 - 10:36:23 CDT)
- Re: namdEnergy doesn't run on clusters John Stone (Wed Jul 18 2012 - 12:37:35 CDT)
- Re: namdEnergy doesn't run on clusters John Stone (Wed Jul 18 2012 - 09:46:30 CDT)
- periodic bonds in vmd Fatemesadat Emami (Tue Jul 17 2012 - 13:10:59 CDT)
- H-H dynamic bonds DESPIAU-PUJO Emilie UJF (Tue Jul 17 2012 - 09:58:31 CDT)
- IMD selections Thomas C. Bishop (Mon Jul 16 2012 - 10:25:05 CDT)
- problem generating psf file Ginger Emel (Fri Jul 13 2012 - 11:22:50 CDT)
- how to change color of the one type of atom niaz poorgholami (Fri Jul 13 2012 - 08:15:42 CDT)
- Building a beta barrel using a beta hairpin Diego Granados (Thu Jul 12 2012 - 17:27:43 CDT)
- Re: namd-l: Re: vmd installation problem Axel Kohlmeyer (Thu Jul 12 2012 - 01:53:15 CDT)
- vmd installation problem oguz gurbulak (Wed Jul 11 2012 - 09:54:16 CDT)
- fftk: domain error: argument not in valid range Ф (Tue Jul 10 2012 - 03:30:31 CDT)
- psfgen, mutate, and multiple chains Andrea Kirkpatrick (Mon Jul 09 2012 - 17:31:35 CDT)
- 'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, October 22-26, 2012 in Urbana, Illinois David Brandon (Mon Jul 09 2012 - 14:32:25 CDT)
- Distance constraints satya kumar (Fri Jul 06 2012 - 18:34:20 CDT)
- Re: Distance constraints Axel Kohlmeyer (Fri Jul 06 2012 - 23:05:45 CDT)
- Re: Distance constraints Suresh (Fri Jul 06 2012 - 23:33:01 CDT)
- Re: Distance constraints satya kumar (Mon Jul 09 2012 - 08:15:51 CDT)
- Re: Distance constraints John Stone (Mon Jul 09 2012 - 10:08:34 CDT)
- Re: Distance constraints satya kumar (Mon Jul 09 2012 - 10:16:58 CDT)
- Re: Distance constraints John Stone (Mon Jul 09 2012 - 11:31:39 CDT)
- Re: Distance constraints satya kumar (Mon Jul 09 2012 - 14:30:27 CDT)
- Re: Distance constraints satya kumar (Mon Jul 09 2012 - 15:35:44 CDT)
- Re: Distance constraints Axel Kohlmeyer (Fri Jul 06 2012 - 23:05:45 CDT)
- Secondary Structure Issue Sarah Richards (Fri Jul 06 2012 - 08:16:04 CDT)
- Building unit cell from asymmetric unit Sebastin Gutirrez (Wed Jul 04 2012 - 17:16:32 CDT)
- about analysis plugin oguz gurbulak (Wed Jul 04 2012 - 09:40:30 CDT)
- Problem with psfgen and Drude Polarizable Force Field Roman Shevchuk (Wed Jul 04 2012 - 06:42:06 CDT)
- 3D visualization options on Linux boxes Vikas Varshney (Tue Jul 03 2012 - 11:37:48 CDT)
- 3d space navigator and MacosX-vmd Passerone, Daniele (Mon Jul 02 2012 - 22:08:28 CDT)
- Problem with tachyon Fatemesadat Emami (Mon Jul 02 2012 - 16:25:43 CDT)
- difficulty in viewing AMBER mdcrd files Mahendra B Thapa (Mon Jul 02 2012 - 11:56:43 CDT)
- volmap (Sun Jul 01 2012 - 09:01:33 CDT)
- remove a selection in vmd? Fatemesadat Emami (Sat Jun 30 2012 - 21:50:36 CDT)
- pore radius measurement Raul Araya (Fri Jun 29 2012 - 13:50:00 CDT)
- VMD selection: change atom size across various frames Wolf Dapp (Fri Jun 29 2012 - 08:57:04 CDT)
- bug of VMD Albert (Fri Jun 29 2012 - 03:40:15 CDT)
- problem with pbc wrap Dian Jiao (Thu Jun 28 2012 - 13:46:00 CDT)
- Isosurfaces and volume slices FX (Thu Jun 28 2012 - 08:22:29 CDT)
- DX potential files Abolfazl Bayat (Thu Jun 28 2012 - 04:10:23 CDT)
- Building a membrane Vince Cho (Wed Jun 27 2012 - 23:03:54 CDT)
- how to calculate water density in the 'hole'? Albert (Wed Jun 27 2012 - 13:26:01 CDT)
- Python script to fix autoionize issues related to long atom type names Evgeny Bulat (Tue Jun 26 2012 - 16:42:37 CDT)
- TkConsole functions Fatemesadat Emami (Tue Jun 26 2012 - 14:38:16 CDT)
- computing potential using pmepot Abolfazl Bayat (Mon Jun 25 2012 - 11:16:49 CDT)
- Force Field ToolKit and QM codes other than Gaussian MOHAMMAD JAVAD AGHAEI (Mon Jun 25 2012 - 02:05:41 CDT)
- dump to vmd Ramin Ekhteiari (Sun Jun 24 2012 - 04:19:57 CDT)
- Running ProcupinePlot script Ban Arn (Fri Jun 22 2012 - 10:01:38 CDT)
- Re: Running ProcupinePlot script John Stone (Fri Jun 22 2012 - 11:44:18 CDT)
- Re: Running ProcupinePlot script Ban Arn (Fri Jun 22 2012 - 11:53:33 CDT)
- Re: Running ProcupinePlot script Ban Arn (Fri Jun 22 2012 - 11:54:15 CDT)
- Re: Running ProcupinePlot script John Stone (Fri Jun 22 2012 - 11:59:59 CDT)
- Re: Running ProcupinePlot script Ban Arn (Fri Jun 22 2012 - 12:04:04 CDT)
- Re: Running ProcupinePlot script John Stone (Fri Jun 22 2012 - 12:13:06 CDT)
- Re: Running ProcupinePlot script Ban Arn (Fri Jun 22 2012 - 12:30:56 CDT)
- Re: Running ProcupinePlot script Ban Arn (Mon Jun 25 2012 - 04:16:28 CDT)
- Re: Running ProcupinePlot script Ban Arn (Fri Jun 22 2012 - 11:53:33 CDT)
- Re: Running ProcupinePlot script John Stone (Fri Jun 22 2012 - 11:44:18 CDT)
- patch SAM in psfgen flavio seixas (Fri Jun 22 2012 - 09:37:17 CDT)
- generating psf files for bicarbonate Traci Clymer (Fri Jun 22 2012 - 09:13:36 CDT)
- VMD NMWiz plugin Ban Arn (Thu Jun 21 2012 - 11:16:08 CDT)
- Workshop for Computational Chemistry and Physics MARK PLUMMER (Wed Jun 20 2012 - 15:20:40 CDT)
- changing font size Shyno Mathew (Tue Jun 19 2012 - 16:44:13 CDT)
- Bond angle distribution Prof. Eddie (Tue Jun 19 2012 - 13:49:33 CDT)
- PMEpot plugin Abolfazl Bayat (Tue Jun 19 2012 - 11:43:42 CDT)
- Getting the internal coordinates table Ajasja Ljubetič (Mon Jun 18 2012 - 04:11:03 CDT)
- fix the viewing angles XY (Mon Jun 18 2012 - 00:29:56 CDT)
- Changing the color of atoms of a particular name Andrew DeYoung (Sat Jun 16 2012 - 18:50:47 CDT)
- SBCG Bond/Angle Parameter Extraction Files Tye Dwight Martin (Fri Jun 15 2012 - 17:28:59 CDT)
- difference in angles and dihedral between psf files Raul Araya (Thu Jun 14 2012 - 10:02:58 CDT)
- scripting bond labeling Prof. Eddie (Wed Jun 13 2012 - 16:44:18 CDT)
- VMD for rectifying oxygen atoms ? Marc Hmberger (Wed Jun 13 2012 - 09:53:31 CDT)
- VMD 1.9 installation on linux Shyno Mathew (Wed Jun 13 2012 - 08:09:43 CDT)
- Problems with analysis tools INPE (Ingrid Viveka Pettersson) (Wed Jun 13 2012 - 07:05:30 CDT)
- Using psfgen with long atom names (How to prepare PDB file?) Ajasja Ljubetič (Wed Jun 13 2012 - 05:33:27 CDT)
- The "gopython" is wrong on the Lunux VMD1.9.1 javacfish (Wed Jun 13 2012 - 01:21:59 CDT)
- wrapall visualization Prof. Eddie (Tue Jun 12 2012 - 12:03:39 CDT)
- Workshop - Computational Molecular Physics of Non-Bonded Bio-Molecular Interactions MARK PLUMMER (Mon Jun 11 2012 - 17:16:47 CDT)
- (no subject) Francesco Pietra (Sun Jun 10 2012 - 12:45:22 CDT)
- hbond Subrata Paul (Sat Jun 09 2012 - 06:27:34 CDT)
- Finding the Number of Chains Present via Scripting Nate Hurley (Fri Jun 08 2012 - 11:19:12 CDT)
- unwrapping long trajectories Edward Lyman (Fri Jun 08 2012 - 10:09:48 CDT)
- problem vmd python Tom King (Wed Jun 06 2012 - 08:20:09 CDT)
- namd/vmd support to GTX-6## series Francesco Pietra (Wed Jun 06 2012 - 03:43:38 CDT)
- VMD Psfgen issue Evgeny Bulat (Tue Jun 05 2012 - 12:55:53 CDT)
- Changing alphanumeric atom naming scheme to numeric Bryan Roessler (Tue Jun 05 2012 - 12:07:15 CDT)
- Segmentation fault (core dumped) arun kumar (Tue Jun 05 2012 - 09:01:03 CDT)
- Re: Segmentation fault (core dumped) John Stone (Tue Jun 05 2012 - 09:38:28 CDT)
- Re: Segmentation fault (core dumped) Axel Kohlmeyer (Tue Jun 05 2012 - 10:09:48 CDT)
- FFTK VMD plugin issue (arising from VECSCALE TCL issues of either NAMD or VMD ?) Francesco Pietra (Tue Jun 05 2012 - 02:16:40 CDT)
- Workshop In Aspen Colorado - MARK PLUMMER (Mon Jun 04 2012 - 15:15:32 CDT)
- FFTK OptCharges Francesco Pietra (Mon Jun 04 2012 - 04:10:40 CDT)
- Strange results when visualizing .trr trajectory patrick wintrode (Sat Jun 02 2012 - 11:41:04 CDT)
- Re: hbonds vs time JC Gumbart (Thu May 31 2012 - 15:09:06 CDT)
- (no subject) Marc Charendoff (Thu May 31 2012 - 12:09:44 CDT)
- hbonds vs time Subrata Paul (Thu May 31 2012 - 10:40:13 CDT)
- Drawing an ellipsoid bsnmrem-obj_at_yahoo.com (Thu May 31 2012 - 08:44:33 CDT)
- VMD membrane builder P.-L. Chau (Thu May 31 2012 - 07:03:34 CDT)
- Problem in making IMD connection prakhar gupta (Thu May 31 2012 - 05:57:27 CDT)
- anybody interested in running VMD in parallel (without recompiling)? Axel Kohlmeyer (Wed May 30 2012 - 19:40:45 CDT)
- questions for trajectory analysis oguz gurbulak (Wed May 30 2012 - 01:44:59 CDT)
- Quick Surf Representation Getting Cutoff when Rendering with Tachyon Robert Johnson (Tue May 29 2012 - 14:11:52 CDT)
- Flickering display when running remotely Clarinet (Tue May 29 2012 - 10:43:52 CDT)
- FFTK for adjusting partial charge only Francesco Pietra (Tue May 29 2012 - 10:29:53 CDT)
- VMD 1.9.1 becomes unresponsive Jim Kress (Sat May 26 2012 - 15:47:08 CDT)
- Another thought related to drawing dipole moment vectors Andrew DeYoung (Sat May 26 2012 - 12:27:53 CDT)
- Re: Another thought related to drawing dipole moment vectors Wang Yi (Sat May 26 2012 - 14:27:25 CDT)
- Re: Another thought related to drawing dipole moment vectors Axel Kohlmeyer (Sat May 26 2012 - 16:22:55 CDT)
- Re: Another thought related to drawing dipole moment vectors Bogdan Costescu (Sun May 27 2012 - 07:10:12 CDT)
- Using Dipole Moment Watcher with Gromacs configurations and trajectories Andrew DeYoung (Sat May 26 2012 - 12:20:09 CDT)
- Re: vmd ATI card John Stone (Fri May 25 2012 - 13:05:20 CDT)
- Movie making with smoothed trajectories Jim Kress (Thu May 24 2012 - 11:02:18 CDT)
- TR: VMD atomselect with cartesian reference peter.schmidtke_at_fr.netgrs.com (Thu May 24 2012 - 08:16:55 CDT)
- Hydrogen bond energy calculation Aditya Padhi (Wed May 23 2012 - 22:56:10 CDT)
- 7th Industrial Fluid Properties Simulation Challenge Joshua D. Moore (Wed May 23 2012 - 11:22:23 CDT)
- Regarding the Use of STL Files as Boundary Features Phelan Jr, Frederick R. Dr. (Wed May 23 2012 - 11:05:46 CDT)
- pbc-box mohammad agha (Wed May 23 2012 - 10:31:08 CDT)
- vmd on Ubuntu: tcl howto Eros Albertazzi (Wed May 23 2012 - 05:37:57 CDT)
- Aspen Center for Physics 2013 Workshop MARK PLUMMER (Tue May 22 2012 - 14:58:42 CDT)
- Polymer Building in VMD Gkourmpis, Thomas (Tue May 22 2012 - 08:21:12 CDT)
- Fw: pbc-box mohammad agha (Mon May 21 2012 - 23:30:38 CDT)
- RMSF and bigdcd Raul Araya (Mon May 21 2012 - 09:39:45 CDT)
- FFTK plugin: in which order should the components be run? Francesco Pietra (Mon May 21 2012 - 04:20:58 CDT)
- pbc-box mohammad agha (Sat May 19 2012 - 08:02:59 CDT)
- cg_bonds.tcl mohammad agha (Sat May 19 2012 - 00:32:37 CDT)
- libGLU.so missing? Fatemesadat Emami (Fri May 18 2012 - 18:55:21 CDT)
- Waters enclosed in internal cavities Wendy Gonzlez (Fri May 18 2012 - 04:46:53 CDT)
- file splitting P.-L. Chau (Thu May 17 2012 - 03:19:50 CDT)
- how to calculate PBC box volume in VMD? Albert (Thu May 17 2012 - 01:26:36 CDT)
- Docking protein-protein vladanstefanovic_at_kg.ac.rs (Wed May 16 2012 - 16:08:22 CDT)
- panel missing! Reza Khalkhali (Wed May 16 2012 - 10:49:51 CDT)
- Getting PSF in right format from .gro file Donovan B.T. (Wed May 16 2012 - 08:54:59 CDT)
- Making only a subset of atoms transparent (or otherwise non-emphasized) Andrew DeYoung (Tue May 15 2012 - 12:49:22 CDT)
- APBS for small molecules jcorradi_at_criba.edu.ar (Sun May 13 2012 - 22:00:08 CDT)
- Suggestion for measure cluster Jrme Hnin (Fri May 11 2012 - 04:32:39 CDT)
- Loop for Andrs Morales (Thu May 10 2012 - 18:40:58 CDT)
- VMD1.9.1 is crashing my system mpincu (Thu May 10 2012 - 16:24:27 CDT)
- Clustering plugin updated to v2.0 Luis Gracia (Thu May 10 2012 - 12:54:20 CDT)
- PBC missed in Amber MD Albert (Thu May 10 2012 - 02:53:00 CDT)
- flashing the VMD mohammad agha (Thu May 10 2012 - 02:00:37 CDT)
- flashing the VMD mohammad agha (Thu May 10 2012 - 01:56:22 CDT)
- New crystallography plugin Dan Michael O. Heggø (Wed May 09 2012 - 17:33:04 CDT)
- New crystallography plugin Dan Michael O. Heggø (Wed May 09 2012 - 16:31:33 CDT)
- Add-H for crystallization water only Francesco Pietra (Wed May 09 2012 - 15:08:09 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 12:26:10 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 11:16:02 CDT)
- flashing the VMD mohammad agha (Tue May 08 2012 - 14:52:53 CDT)
- Re: flashing the VMD Axel Kohlmeyer (Tue May 08 2012 - 16:26:26 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 10:00:54 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 10:07:24 CDT)
- Re: flashing the VMD Axel Kohlmeyer (Wed May 09 2012 - 11:01:54 CDT)
- Re: flashing the VMD John Stone (Wed May 09 2012 - 10:11:38 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 10:24:58 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 10:26:50 CDT)
- Re: flashing the VMD John Stone (Wed May 09 2012 - 10:30:23 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 11:07:23 CDT)
- Re: flashing the VMD John Stone (Wed May 09 2012 - 11:13:43 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 12:24:53 CDT)
- Re: flashing the VMD John Stone (Wed May 09 2012 - 13:17:42 CDT)
- flashing the VMD mohammad agha (Thu May 10 2012 - 01:42:43 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 10:00:54 CDT)
- Re: flashing the VMD Axel Kohlmeyer (Tue May 08 2012 - 16:26:26 CDT)
- counting specific atom types winardi, erik (Tue May 08 2012 - 08:37:01 CDT)
- diffusion coefficient plug-in in VMD fariba taghavi (Tue May 08 2012 - 07:06:31 CDT)
- flashing the VMD mohammad agha (Tue May 08 2012 - 05:18:04 CDT)
- flasshing the VMD mohammad agha (Mon May 07 2012 - 21:13:43 CDT)
- strange coloring Wei Chen (Mon May 07 2012 - 15:17:21 CDT)
- .trr files slow to load patrick wintrode (Mon May 07 2012 - 12:00:19 CDT)
- what's the Letter in figure caption meaning of TIME-LINE 2nd structure present? Albert (Mon May 07 2012 - 10:07:43 CDT)
- Fwd: VMD Stereo does not work Quadbufferd Christian Wohlschlager (Mon May 07 2012 - 02:46:23 CDT)
- %-sign shortcut for mouse->force->atom not working Christopher Neale (Sun May 06 2012 - 12:21:38 CDT)
- Save/restore display parameters Jrme Hnin (Fri May 04 2012 - 09:51:28 CDT)
- gromacs trajectory file ahmet yldrm (Thu May 03 2012 - 01:49:13 CDT)
- N-methylated amino acid topologies Joakim Swedberg (Wed May 02 2012 - 19:20:41 CDT)
- Free software for building peptide meisam valizadeh kiamahalleh (Wed May 02 2012 - 01:34:20 CDT)
- Problem with moving protein for all frames gke aye gven (Tue May 01 2012 - 16:14:24 CDT)
- Make "Load all at once" the default? Adding representations? Heather Mayes (Tue May 01 2012 - 15:45:39 CDT)
- helical content script Ban Arn (Tue May 01 2012 - 05:55:51 CDT)
- visualization of HOMO&LUMO in vmd leila karami (Tue May 01 2012 - 04:26:06 CDT)
- 3D density in the specific part of the simulation box fariba taghavi (Tue May 01 2012 - 00:48:35 CDT)
- In-Residence Training at the Theoretical & Computational Biophysics Group, July 16-27, 2012 TCBG Workshop (Mon Apr 30 2012 - 17:02:14 CDT)
- how to use the AutoIMD "Tool control" panel. Christopher Neale (Mon Apr 30 2012 - 11:28:19 CDT)
- writing pair/bond/angle/dihedral information for lammps input winardi, erik (Sun Apr 29 2012 - 17:17:14 CDT)
- Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 14:39:52 CDT)
- RE: Force Field ToolKit - Angles JC Gumbart (Sun Apr 29 2012 - 14:57:33 CDT)
- RE: Force Field ToolKit - Angles Mayne, Christopher G (Sun Apr 29 2012 - 16:28:16 CDT)
- RE: Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 18:58:39 CDT)
- Re: Force Field ToolKit - Angles Wang Yi (Sun Apr 29 2012 - 19:56:10 CDT)
- Re: Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Mon Apr 30 2012 - 15:22:42 CDT)
- Re: Force Field ToolKit - Angles JC Gumbart (Mon Apr 30 2012 - 15:26:07 CDT)
- Re: Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Mon Apr 30 2012 - 21:20:54 CDT)
- Re: Force Field ToolKit - Angles Mayne, Christopher G (Mon Apr 30 2012 - 20:15:21 CDT)
- Re: Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Mon Apr 30 2012 - 21:22:37 CDT)
- RE: Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 19:29:33 CDT)
- RE: Force Field ToolKit - Angles Mayne, Christopher G (Sun Apr 29 2012 - 16:28:16 CDT)
- RE: Force Field ToolKit - Angles JC Gumbart (Sun Apr 29 2012 - 14:57:33 CDT)
- Force Field Toolkit: scaling, weight etc DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 06:37:04 CDT)
- measure gofr script Emiliano Ippoliti (Sat Apr 28 2012 - 08:51:58 CDT)
- water mean residence time jampani srinivas (Fri Apr 27 2012 - 17:23:53 CDT)
- PSF generation for proteins with isopeptide bonds Zack Scholl (Thu Apr 26 2012 - 19:57:48 CDT)
- VMD Stereo not work Christian Wohlschlager (Thu Apr 26 2012 - 08:32:48 CDT)
- Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 04:42:40 CDT)
- Re: Problem with generating psf using CGENFF Chris Harrison (Thu Apr 26 2012 - 06:23:08 CDT)
- Re: Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 11:37:56 CDT)
- Re: Problem with generating psf using CGENFF Chris Harrison (Thu Apr 26 2012 - 11:55:08 CDT)
- Re: Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 12:26:50 CDT)
- RE: Problem with generating psf using CGENFF Bennion, Brian (Thu Apr 26 2012 - 13:27:45 CDT)
- RE: Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 23:34:55 CDT)
- RE: Problem with generating psf using CGENFF Bennion, Brian (Fri Apr 27 2012 - 09:23:34 CDT)
- Re: Problem with generating psf using CGENFF Ahmet Bakan (Fri Apr 27 2012 - 11:27:08 CDT)
- RE: Problem with generating psf using CGENFF Bennion, Brian (Fri Apr 27 2012 - 11:57:18 CDT)
- Re: Problem with generating psf using CGENFF Axel Kohlmeyer (Thu Apr 26 2012 - 12:41:38 CDT)
- Re: Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 13:00:01 CDT)
- Re: Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 11:37:56 CDT)
- Re:Problem with generating psf using CGENFF amin_at_imtech.res.in (Fri Apr 27 2012 - 22:35:16 CDT)
- Re:Problem with generating psf using CGENFF amin_at_imtech.res.in (Fri Apr 27 2012 - 22:46:21 CDT)
- Re: Problem with generating psf using CGENFF Chris Harrison (Thu Apr 26 2012 - 06:23:08 CDT)
- VMD Question: How to build a polymer in VMD? Gkourmpis, Thomas (Thu Apr 26 2012 - 03:51:45 CDT)
- how to center protein? Chirag Vora (Tue Apr 24 2012 - 00:04:09 CDT)
- H-H dynamic bonds Q=A3ukasz_Pi=EAko=B6=22?= (Mon Apr 23 2012 - 17:21:42 CDT)
- Hydrophobic mismatch script Ban Arn (Mon Apr 23 2012 - 04:08:28 CDT)
- Movie Plugin Engelman, Joshua (Sat Apr 21 2012 - 15:54:54 CDT)
- openGL x,y position Mayne, Christopher G (Sat Apr 21 2012 - 14:01:51 CDT)
- HOOMD problems Engelman, Joshua (Fri Apr 20 2012 - 15:35:52 CDT)
- stereo images for publication Vlad Cojocaru (Fri Apr 20 2012 - 09:59:21 CDT)
- Anaglyph stereo with other colors Luis M. Snchez (Fri Apr 20 2012 - 08:09:19 CDT)
- Re: Anaglyph stereo with other colors John Stone (Fri Apr 20 2012 - 17:27:39 CDT)
- Re: Anaglyph stereo with other colors flavio seixas (Sat Apr 21 2012 - 13:36:01 CDT)
- Re: Anaglyph stereo with other colors Luis M. Snchez (Sat Apr 21 2012 - 16:56:32 CDT)
- Re: Anaglyph stereo with other colors John Stone (Mon Apr 23 2012 - 15:49:37 CDT)
- Anaglyph stereo with other colors Luis M. Snchez (Fri May 04 2012 - 09:45:34 CDT)
- Re: Anaglyph stereo with other colors John Stone (Mon Apr 23 2012 - 15:40:19 CDT)
- Re: Anaglyph stereo with other colors flavio seixas (Sat Apr 21 2012 - 13:36:01 CDT)
- Re: Anaglyph stereo with other colors John Stone (Fri Apr 20 2012 - 17:27:39 CDT)
- gofr limit, Kirkwood-Buff integrals Ivan Vyalov (Fri Apr 20 2012 - 05:43:18 CDT)
- AutoPSF Donovan B.T. (Fri Apr 20 2012 - 04:29:53 CDT)
- Re: Thickness of bilayer script Andrs Morales (Thu Apr 19 2012 - 20:58:35 CDT)
- segmentation fault with NAMDenergy amin_at_imtech.res.in (Thu Apr 19 2012 - 20:12:53 CDT)
- Problem with hydration script Bryan Roessler (Thu Apr 19 2012 - 13:17:39 CDT)
- Valence bond force field in NAMD Ganesh Kamath (Thu Apr 19 2012 - 09:26:35 CDT)
- Units of Isovalue Slider in Isovalue Drawing Method Andrew DeYoung (Wed Apr 18 2012 - 20:08:53 CDT)
- Average pocket size? patrick wintrode (Wed Apr 18 2012 - 11:45:04 CDT)
- Saving coordinates that meet selection criteria for each frame Ben Rodriguez (Tue Apr 17 2012 - 18:28:43 CDT)
- Misfunction of some plugins if compiled Vlastimil Zíma (Tue Apr 17 2012 - 12:28:10 CDT)
- Saving of pdb-trajectory in NMR-like format James Starlight (Tue Apr 17 2012 - 09:21:40 CDT)
- Using Measure SASA in NAMD Simulation Ajith Rathnaweera Rajapaksha Mudalige (Mon Apr 16 2012 - 18:54:32 CDT)
- lipid order parameter Ban Arn (Mon Apr 16 2012 - 05:16:31 CDT)
- align electron density map onto simulated structure (with different center) Magnus Andersson (Sun Apr 15 2012 - 18:42:21 CDT)
- Dynamical Network Analysis programs gncommunities and subopt elena ermakova (Sat Apr 14 2012 - 01:40:33 CDT)
- Is it possible to save the position and angle of the camera for future VMD sessions? Andrew DeYoung (Fri Apr 13 2012 - 13:07:20 CDT)
- Default representation style in command line Paulo E. Abreu (Fri Apr 13 2012 - 06:10:43 CDT)
- (no subject) rainy908_at_yahoo.com (Thu Apr 12 2012 - 20:54:30 CDT)
- Drawing a high resolution transparent or translucent sphere Andrew DeYoung (Wed Apr 11 2012 - 20:37:20 CDT)
- saving dcd file different if by script or by interactive mode Jose Borreguero (Tue Apr 10 2012 - 17:32:11 CDT)
- topotools writelammps data winardi, erik (Tue Apr 10 2012 - 17:24:48 CDT)
- Problems with for loop Andrs Morales (Tue Apr 10 2012 - 11:43:10 CDT)
- VMD QUESTION( Movie making ) james Fernandez (Mon Apr 09 2012 - 16:49:21 CDT)
- Average angle between the lipid dipole vector and the bilayer normal. Andrs Morales (Mon Apr 09 2012 - 12:45:44 CDT)
- Re: problems with MDFF Gregorio Fernandez (Mon Apr 09 2012 - 06:21:33 CDT)
- IMD - remove forces on mouse release jonathan KHAO (Sun Apr 08 2012 - 13:05:45 CDT)
- Mac OS compilation what could be going wrongQ?= FX (Sun Apr 08 2012 - 12:03:42 CDT)
- Re: Mac OS compilation? what could be going wrong? John Stone (Mon Apr 09 2012 - 10:11:17 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Mon Apr 09 2012 - 14:06:06 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Tue Apr 10 2012 - 03:50:32 CDT)
- Re: Mac OS compilation? what could be going wrong? John Stone (Wed Apr 11 2012 - 10:51:01 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Wed Apr 11 2012 - 11:57:08 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Wed Apr 11 2012 - 11:58:36 CDT)
- Re: Mac OS compilation? what could be going wrong? John Stone (Wed Apr 11 2012 - 14:15:59 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Wed Apr 11 2012 - 14:25:47 CDT)
- Re: Mac OS compilation? what could be going wrong? John Stone (Wed Apr 11 2012 - 14:33:34 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Mon Apr 09 2012 - 14:06:06 CDT)
- Re: Mac OS compilation? what could be going wrong? John Stone (Mon Apr 09 2012 - 10:11:17 CDT)
- an old question Albert (Sat Apr 07 2012 - 00:28:29 CDT)
- Re: an old question John Stone (Mon Apr 09 2012 - 10:30:33 CDT)
- Re: an old question Albert (Mon Apr 09 2012 - 23:36:16 CDT)
- Re: an old question John Stone (Mon Apr 09 2012 - 23:49:11 CDT)
- Re: an old question Albert (Tue Apr 10 2012 - 00:08:23 CDT)
- Re: an old question John Stone (Tue Apr 10 2012 - 14:11:51 CDT)
- Re: an old question Albert (Tue Apr 10 2012 - 14:23:16 CDT)
- Re: an old question PAUL NEWMAN (Tue Apr 10 2012 - 16:22:09 CDT)
- Re: an old question John Stone (Wed Apr 11 2012 - 13:57:49 CDT)
- Re: an old question Albert (Mon Apr 09 2012 - 23:36:16 CDT)
- Re: an old question John Stone (Mon Apr 09 2012 - 10:30:33 CDT)
- problems with MDFF Gregorio Fernandez (Fri Apr 06 2012 - 02:42:22 CDT)
- Lipid order paramaeter script Ban Arn (Thu Apr 05 2012 - 04:35:52 CDT)
- Regarding saving data snoze pa (Wed Apr 04 2012 - 12:21:39 CDT)
- using min. image. conven. for transport properties Papan S (Wed Apr 04 2012 - 08:16:00 CDT)
- Auto Bead Display Size using topotools Phelan Jr, Frederick R. Dr. (Mon Apr 02 2012 - 14:50:47 CDT)
- python error? Albert (Mon Apr 02 2012 - 11:28:14 CDT)
- psfgen tyrosine anion-Fe bond Francesco Pietra (Sun Apr 01 2012 - 09:53:13 CDT)
- FW: How to set VMD_Plugin_path? a a (Sat Mar 31 2012 - 23:25:30 CDT)
- Printing Coordinates with Tcl/Tk Mr Bernard Ramos (Fri Mar 30 2012 - 12:16:00 CDT)
- Plotting of Co-ordinates on VMD james Fernandez (Fri Mar 30 2012 - 11:37:07 CDT)
- bondsrecalc question Denis Davydov (Fri Mar 30 2012 - 11:10:14 CDT)
- Dynamically displaying the length of hydrogen bonds Andrew DeYoung (Fri Mar 30 2012 - 10:30:08 CDT)
- RE: Is there any way to stop the display of bonds for bonded atoms on opposite sides of a periodic boundary without unwrapping? Phelan Jr, Frederick R. Dr. (Thu Mar 29 2012 - 15:32:59 CDT)
- Is there any way to stop the display of bonds for bonded atoms on opposite sides of a periodic boundary without unwrapping? Phelan Jr, Frederick R. Dr. (Thu Mar 29 2012 - 14:31:58 CDT)
- Possible MPI code problem (and fix) Christoph Willing (Thu Mar 29 2012 - 07:30:12 CDT)
- kill source'd tcl script Philippe Bopp / temporary (Wed Mar 28 2012 - 03:37:12 CDT)
- Can't set graphics window position to 0,0 Christoph Willing (Tue Mar 27 2012 - 18:17:10 CDT)
- secondary structure calculation Ban Arn (Tue Mar 27 2012 - 11:55:24 CDT)
- COORDINATES extraction of molecule's centers of mass VladanStefanovic_at_kg.ac.rs (Tue Mar 27 2012 - 01:37:23 CDT)
- autopsf: can't read "logfilename" Francesco Pietra (Sat Mar 24 2012 - 11:46:15 CDT)
- (no subject) rainy908_at_yahoo.com (Fri Mar 23 2012 - 07:55:48 CDT)
- (no subject) rainy908_at_yahoo.com (Thu Mar 22 2012 - 17:42:38 CDT)
- (no subject) rainy908_at_yahoo.com (Thu Mar 22 2012 - 15:06:33 CDT)
- adding patches via autopsf Bennion, Brian (Wed Mar 21 2012 - 11:34:47 CDT)
- starting tkcon mbcx7sa3_at_zedat.fu-berlin.de (Wed Mar 21 2012 - 10:17:30 CDT)
- solvent radius setyanto md (Tue Mar 20 2012 - 01:03:29 CDT)
- lib/stride/README Benjamin Kaduk (Mon Mar 19 2012 - 21:57:22 CDT)
- plugins/hesstrans/Makefile recurses on CXXFLAGS Benjamin Kaduk (Mon Mar 19 2012 - 21:42:36 CDT)
- Define "color Element" through rgb values Roger Nadler (Mon Mar 19 2012 - 11:47:14 CDT)
- bond cutoff Zhuyi Xue (Mon Mar 19 2012 - 08:45:34 CDT)
- RMSD George Tzotzos (Sun Mar 18 2012 - 06:47:36 CDT)
- turns, using Stride Neelanjana Sengupta (Sat Mar 17 2012 - 02:03:52 CDT)
- Simulations with alpha methylated amino acids amin_at_imtech.res.in (Wed Mar 14 2012 - 20:17:04 CDT)
- writepdb, wrong lines in output Francois Martz (Wed Mar 14 2012 - 12:15:22 CDT)
- Desmond Trajectory Files on the fly in VMD Hitesh Patel (Tue Mar 13 2012 - 05:13:34 CDT)
- tutorial on inorganic builder setyanto md (Tue Mar 13 2012 - 03:56:35 CDT)
- load propka3.1 results error Albert (Mon Mar 12 2012 - 15:24:37 CDT)
- how to configure PROPKA3 in VMD 1.91? Albert (Mon Mar 12 2012 - 15:11:39 CDT)
- Drawing the simulation box from a Gromacs trajectory Andrew DeYoung (Mon Mar 12 2012 - 12:43:23 CDT)
- Force field toolkit (ffTK) - problem of reading Gaussian log file Wang Yi (Sat Mar 10 2012 - 13:58:20 CST)
- Re: get avg ca distance Ana Celia Vila Verde (Fri Mar 09 2012 - 02:10:56 CST)
- VMD Display Error - Detected X11 'Composite' extension Shalabh Maroo (Thu Mar 08 2012 - 17:53:05 CST)
- get avg ca distance Murpholino Peligro (Thu Mar 08 2012 - 15:33:19 CST)
- positively charged portion of the protein surface Thomas Evangelidis (Thu Mar 08 2012 - 06:23:20 CST)
- Re: [AMBER] Viewing with VMD bonds set by the "bond" command Francesco Pietra (Thu Mar 08 2012 - 03:48:48 CST)
- namd2 unable to find bond. Dave Arias (NelsonDa) (Wed Mar 07 2012 - 14:58:39 CST)
- Memory used by VMD is much less than installed Meyer-Almes, Franz-Josef, Prof. Dr. (Wed Mar 07 2012 - 05:03:08 CST)
- rmsf to b-factor conversion abinayar_at_imsc.res.in (Wed Mar 07 2012 - 04:06:29 CST)
- Individual components of RMSD? patrick wintrode (Tue Mar 06 2012 - 11:36:44 CST)
- make movies with user-defined script lam nguyen (Mon Mar 05 2012 - 12:49:00 CST)
- Re: make movies with user-defined script John Stone (Thu Mar 08 2012 - 12:12:06 CST)
- Re: make movies with user-defined script lam nguyen (Fri Mar 09 2012 - 12:10:05 CST)
- Re: make movies with user-defined script John Stone (Fri Mar 09 2012 - 16:27:43 CST)
- Re: make movies with user-defined script lam nguyen (Fri Mar 09 2012 - 17:31:35 CST)
- Re: make movies with user-defined script lam nguyen (Fri Mar 09 2012 - 18:34:18 CST)
- Re: make movies with user-defined script Axel Kohlmeyer (Fri Mar 09 2012 - 19:35:32 CST)
- Re: make movies with user-defined script lam nguyen (Fri Mar 09 2012 - 19:57:53 CST)
- Re: make movies with user-defined script John Stone (Fri Mar 09 2012 - 20:45:15 CST)
- Re: make movies with user-defined script lam nguyen (Sun Mar 11 2012 - 18:55:38 CDT)
- Re: make movies with user-defined script John Stone (Mon Mar 12 2012 - 15:53:06 CDT)
- Re: make movies with user-defined script lam nguyen (Mon Mar 12 2012 - 20:37:19 CDT)
- Re: make movies with user-defined script lam nguyen (Tue Mar 13 2012 - 16:23:17 CDT)
- Re: make movies with user-defined script lam nguyen (Fri Mar 09 2012 - 12:10:05 CST)
- Re: make movies with user-defined script John Stone (Thu Mar 08 2012 - 12:12:06 CST)
- information regarding tcl script for cell volume changing with each frame siladitya mukherjee (Sat Mar 03 2012 - 13:50:09 CST)
- Bug in VMD main? Ahmet Bakan (Sat Mar 03 2012 - 12:25:05 CST)
- Re: Using VMD to plot coordination number of solvated ion v/s time Ana Celia Vila Verde (Fri Mar 02 2012 - 10:15:23 CST)
- Using VMD to plot coordination number of solvated ion v/s time skolev_at_mnet.bg (Fri Mar 02 2012 - 09:33:07 CST)
- exporting marching cubes data from QuickSurf Zhe Wu (Thu Mar 01 2012 - 21:40:11 CST)
- Calculating RDF from xyz file siladitya mukherjee (Thu Mar 01 2012 - 16:38:54 CST)
- measure sasa Aaron Oakley (Wed Feb 29 2012 - 17:50:08 CST)
- how to place a membrane protein with OPM ? Albert (Wed Feb 29 2012 - 15:33:44 CST)
- Adsorption VMD Tcl script error vladanstefanovic_at_kg.ac.rs (Wed Feb 29 2012 - 13:51:58 CST)
- Lipid order parameters Ganesh Kamath (Mon Feb 27 2012 - 14:21:13 CST)
- Problems with PSFGEN Dave Arias (NelsonDa) (Mon Feb 27 2012 - 13:18:07 CST)
- Plugins use after compilation question Anthony Cruz Balberdi (Mon Feb 27 2012 - 12:38:01 CST)
- How to change the python include and linkage path in configure script Haw-Zan Goh (Mon Feb 27 2012 - 12:15:06 CST)
- From Vmd to lammps data file Dimitrios Mantzalis (Mon Feb 27 2012 - 06:55:34 CST)
- possible memory leak with pbc wrap Ana Celia Vila Verde (Fri Feb 24 2012 - 09:16:59 CST)
- Input selection as xyz co-ordinates Ban Arn (Wed Feb 22 2012 - 09:09:33 CST)
- Release of the R.E.D.-III.5 tools FyD (Wed Feb 22 2012 - 05:00:23 CST)
- Secondary structure assignment Zhuyi Xue (Tue Feb 21 2012 - 21:24:14 CST)
- [request] Best practices for rendering frames and making movies Diego Enry Barreto Gomes (Tue Feb 21 2012 - 17:22:56 CST)
- SASA -tcl script Ban Arn (Tue Feb 21 2012 - 12:36:07 CST)
- incorrect number of coordinates in .dcd file error abinayar_at_imsc.res.in (Tue Feb 21 2012 - 00:53:08 CST)
- how to add spring between two atoms SONY kaur (Mon Feb 20 2012 - 13:05:40 CST)
- .xyz bond winardi, erik (Mon Feb 20 2012 - 05:15:05 CST)
- Distance between center of mass of two amino acid residues. mish (Sun Feb 19 2012 - 10:27:45 CST)
- quicksurf and PBC Philippe Bopp / temporary (Sat Feb 18 2012 - 09:45:48 CST)
- About FFTP with transition metal complexes Francesco Pietra (Sat Feb 18 2012 - 00:23:01 CST)
- trajector@VMD Turgay Cakmak (Fri Feb 17 2012 - 08:54:15 CST)
- append glow lights to a VMD/Tachyon scene Filip Persson (Fri Feb 17 2012 - 03:11:53 CST)
- pdb reader/writer appears to corrupt pdb output Bennion, Brian (Thu Feb 16 2012 - 14:49:06 CST)
- Membrane and box with PBC Ricardo Soares (Thu Feb 16 2012 - 12:28:06 CST)
- Create multiple tcl interpreter child instances within VMD to run several scripts at once Salvatore Mario Cosseddu (Thu Feb 16 2012 - 11:23:15 CST)
- Re: Create multiple tcl interpreter child instances within VMD to run several scripts at once John Stone (Thu Feb 16 2012 - 11:40:11 CST)
- Re: Create multiple tcl interpreter child instances within VMD to run several scripts at once Axel Kohlmeyer (Thu Feb 16 2012 - 12:46:48 CST)
- quick-surf and throb Philippe Bopp / temporary (Thu Feb 16 2012 - 03:55:32 CST)
- Re: [Stefan_Franzen@ncsu.edu: Patch for deoxy and dideoxy nucleotides] Jim Phillips (Wed Feb 15 2012 - 10:24:11 CST)
- ERROR) Tcl startup error: Can't find a usable init.tcl in the following directories: Urszula Uciechowska (Wed Feb 15 2012 - 07:59:30 CST)
- installation error Urszula Uciechowska (Wed Feb 15 2012 - 03:28:59 CST)
- ERROR) Tcl startup error: Can't find a usable init.tcl in the following directories: Urszula Uciechowska (Wed Feb 15 2012 - 01:48:52 CST)
- Hbonds Analysis Aric Newton (Tue Feb 14 2012 - 14:22:27 CST)
- Re: Hbonds Analysis Axel Kohlmeyer (Tue Feb 14 2012 - 15:36:13 CST)
- Re: Hbonds Analysis John Stone (Wed Feb 15 2012 - 10:13:18 CST)
- Re: Hbonds Analysis Aric Newton (Wed Feb 15 2012 - 18:11:58 CST)
- Re: Hbonds Analysis Axel Kohlmeyer (Wed Feb 15 2012 - 18:14:24 CST)
- Do H-bonds cross periodic boundaries? Re: Hbonds Analysis. Aric Newton (Thu Feb 16 2012 - 10:27:38 CST)
- Re: Do H-bonds cross periodic boundaries? Re: Hbonds Analysis. John Stone (Thu Feb 16 2012 - 10:34:58 CST)
- Re: Hbonds Analysis John Stone (Wed Feb 15 2012 - 10:13:18 CST)
- Re: Hbonds Analysis Axel Kohlmeyer (Tue Feb 14 2012 - 15:36:13 CST)
- Timestep Molybdos Kirkimpolakis (Mon Feb 13 2012 - 15:53:15 CST)
- radial distribution funtion Paymon Pirzadeh (Mon Feb 13 2012 - 15:21:25 CST)
- Spatial (angular) distribution function David Cohen-Tanugi (Mon Feb 13 2012 - 13:38:11 CST)
- Patch for deoxy and dideoxy nucleotides Stefan Franzen (Mon Feb 13 2012 - 09:31:12 CST)
- Problem with VMD 1.9.1 (CUDA) on Snow Leopard Christian Mcksch (Mon Feb 13 2012 - 05:02:54 CST)
- Meadionize lecan (Sun Feb 12 2012 - 21:05:15 CST)
- PROPKA doesn't work in recent VMD1.9.1 Albert (Sun Feb 12 2012 - 05:25:14 CST)
- problem with catdcd Albert (Sun Feb 12 2012 - 02:23:40 CST)
- charges in VMD 1.9 vs. VMD 1.8.7 Philippe Bopp / temporary (Fri Feb 10 2012 - 07:43:17 CST)
- Stand-alone VMD ? R. Charbel Maroun (Fri Feb 10 2012 - 05:26:38 CST)
- multiseq doesn't respond to ctrl key correctly charles sun (Thu Feb 09 2012 - 22:58:45 CST)
- radial distribution function Paymon Pirzadeh (Thu Feb 09 2012 - 20:15:15 CST)
- change of font lecan (Thu Feb 09 2012 - 20:01:17 CST)
- Source Command MARK PLUMMER (Thu Feb 09 2012 - 10:06:42 CST)
- Source Command MARK PLUMMER (Thu Feb 09 2012 - 09:53:36 CST)
- Use of coarse grain plugin kirtana S (Wed Feb 08 2012 - 17:35:26 CST)
- VMD Contact map through time Zack Scholl (Wed Feb 08 2012 - 16:09:04 CST)
- charge visualization niladri patra (Tue Feb 07 2012 - 18:41:37 CST)
- Use variable in atomselect command Brian Kim (Tue Feb 07 2012 - 15:16:17 CST)
- NAMDenergy plugin_VMD_van der Waal interactions Bruno Lus Pinto de Oliveira (Tue Feb 07 2012 - 09:20:23 CST)
- Configure VMD while GROMACS Installation Hitesh Patel (Tue Feb 07 2012 - 03:39:30 CST)
- testing vmd1.9.1 Bennion, Brian (Mon Feb 06 2012 - 18:19:19 CST)
- Tcl script error Ban Arn (Mon Feb 06 2012 - 10:50:14 CST)
- Re: Tcl script error John Stone (Mon Feb 06 2012 - 10:58:26 CST)
- Re: Tcl script error Ban Arn (Mon Feb 06 2012 - 11:12:12 CST)
- Re: Tcl script error Axel Kohlmeyer (Mon Feb 06 2012 - 11:54:35 CST)
- Re: Tcl script error Ban Arn (Mon Feb 06 2012 - 11:57:57 CST)
- Re: Tcl script error Axel Kohlmeyer (Mon Feb 06 2012 - 12:02:47 CST)
- Re: Tcl script error Ban Arn (Mon Feb 06 2012 - 12:05:49 CST)
- Re: Tcl script error John Stone (Wed Feb 08 2012 - 15:18:44 CST)
- Re: Tcl script error Ban Arn (Wed Feb 08 2012 - 15:59:22 CST)
- Re: Tcl script error John Stone (Thu Feb 09 2012 - 14:23:21 CST)
- Re: Tcl script error Ban Arn (Thu Feb 09 2012 - 16:17:48 CST)
- Re: Tcl script error Axel Kohlmeyer (Mon Feb 06 2012 - 11:46:43 CST)
- Re: Tcl script error John Stone (Mon Feb 06 2012 - 10:58:26 CST)
- PSFGEN and Reading Bonds from PDB Files Rajan Vatassery (Sun Feb 05 2012 - 14:13:43 CST)
- Re: PSFGEN and Reading Bonds from PDB Files Axel Kohlmeyer (Sun Feb 05 2012 - 15:36:29 CST)
- Re: PSFGEN and Reading Bonds from PDB Files Chris Harrison (Sun Feb 05 2012 - 15:45:19 CST)
- Re: PSFGEN and Reading Bonds from PDB Files flavio seixas (Sun Feb 05 2012 - 18:24:40 CST)
- Re: PSFGEN and Reading Bonds from PDB Files Rajan Vatassery (Mon Feb 06 2012 - 11:02:14 CST)
- ffTK in the just released VMD 1.9.1 JC Gumbart (Sat Feb 04 2012 - 15:04:05 CST)
- Announce: VMD 1.9.1 released John Stone (Sat Feb 04 2012 - 14:25:58 CST)
- The spheres become oval, getting close to the screen borders Cosseddu, Salvatore (Sun Feb 05 2012 - 09:53:57 CST)
- create images in vmd oguz gurbulak (Fri Feb 03 2012 - 05:34:54 CST)
- how to display the full molecule when use "within" option? Albert (Fri Feb 03 2012 - 05:31:10 CST)
- floating error - tcl script Ban Arn (Fri Feb 03 2012 - 04:51:11 CST)
- Error while running steered MD script Ban Arn (Thu Feb 02 2012 - 10:24:18 CST)
- how to measure residues' chi angle in VMD? Albert (Thu Feb 02 2012 - 03:34:27 CST)
- how to merge two PDB trajectories? Albert (Wed Feb 01 2012 - 23:34:31 CST)
- is it possible to enable GPU rendering? Albert (Wed Feb 01 2012 - 14:04:02 CST)
- Save coor coordinates as pdb R. Charbel Maroun (Wed Feb 01 2012 - 12:26:31 CST)
- Gromacs analysis tools for Namd output PAUL NEWMAN (Wed Feb 01 2012 - 11:41:40 CST)
- Re: RE : PCA of desmond trajectories Hitesh Patel (Wed Feb 01 2012 - 10:26:44 CST)
- Unusual visualisations Ben Hall (Wed Feb 01 2012 - 09:54:01 CST)
- PCA of desmond trajectories Hitesh Patel (Wed Feb 01 2012 - 09:29:15 CST)
- Rmsd script with arguments Mustafa Tekpinar (Tue Jan 31 2012 - 13:48:40 CST)
- Quantitative meaning of volmap isosurface Ben Hall (Tue Jan 31 2012 - 06:01:20 CST)
- how to fix structural alignment pdbs thereal sisterdot (Tue Jan 31 2012 - 03:04:52 CST)
- how to configure Tachyon image render size? Albert (Mon Jan 30 2012 - 11:52:02 CST)
- NewRibbons/NewCartoon problem due to missing CUDA ? thereal sisterdot (Mon Jan 30 2012 - 05:27:33 CST)
- Re: NewRibbons/NewCartoon problem due to missing CUDA ? Axel Kohlmeyer (Tue Jan 31 2012 - 07:18:10 CST)
- Re: NewRibbons/NewCartoon problem due to missing CUDA ? John Stone (Tue Jan 31 2012 - 15:47:00 CST)
- Re: NewRibbons/NewCartoon problem due to missing CUDA ? thereal sisterdot (Thu Feb 02 2012 - 05:49:34 CST)
- Calculation of ligand displacement Vs time Ban Arn (Mon Jan 30 2012 - 03:53:27 CST)
- problem with new plugin installation. Albert (Sat Jan 28 2012 - 01:18:14 CST)
- Cutting a sphere with a specified radius along a trajectory Mustafa Tekpinar (Fri Jan 27 2012 - 16:26:29 CST)
- Re: how to enlarge the menu font? Albert (Fri Jan 27 2012 - 01:33:48 CST)
- how to enlarge the menu font? Albert (Fri Jan 27 2012 - 00:18:36 CST)
- Viewing "other" data as a trajectory plays J. Nathan Scott (Thu Jan 26 2012 - 11:40:08 CST)
- package ::struct::set not available Ana Celia Vila Verde (Thu Jan 26 2012 - 08:36:56 CST)
- VMD 1.9.1 beta 2 to be posted tonight... John Stone (Wed Jan 25 2012 - 16:08:28 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... John Stone (Wed Jan 25 2012 - 19:35:42 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... Ajasja Ljubetič (Thu Jan 26 2012 - 03:04:29 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... Felix Frolow (Thu Jan 26 2012 - 06:32:50 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... Ajasja Ljubetič (Thu Jan 26 2012 - 07:06:28 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... Axel Kohlmeyer (Thu Jan 26 2012 - 06:52:27 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... John Stone (Thu Jan 26 2012 - 09:34:20 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... Ajasja Ljubetič (Thu Jan 26 2012 - 03:04:29 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... John Stone (Wed Jan 25 2012 - 19:35:42 CST)
- unit cell volume is zero jeela keel (Wed Jan 25 2012 - 15:56:40 CST)
- Looking for nice example images for VMD 1.9.1 release page... John Stone (Wed Jan 25 2012 - 14:29:39 CST)
- atomselect counting jeela keel (Wed Jan 25 2012 - 08:39:47 CST)
- Topotools - limit to size of system it can be used for? Michael Doig (Tue Jan 24 2012 - 05:48:04 CST)
- Re: Topotools - limit to size of system it can be used for? Axel Kohlmeyer (Tue Jan 24 2012 - 07:13:27 CST)
- Re: Topotools - limit to size of system it can be used for? Michael Doig (Tue Jan 24 2012 - 08:00:46 CST)
- Re: Topotools - limit to size of system it can be used for? Axel Kohlmeyer (Tue Jan 24 2012 - 08:46:25 CST)
- Re: Topotools - limit to size of system it can be used for? Michael Doig (Tue Jan 24 2012 - 09:55:23 CST)
- Re: Topotools - limit to size of system it can be used for? John Stone (Tue Jan 24 2012 - 10:09:45 CST)
- Re: Topotools - limit to size of system it can be used for? Michael Doig (Tue Jan 24 2012 - 10:13:24 CST)
- Re: Topotools - limit to size of system it can be used for? John Stone (Tue Jan 24 2012 - 10:15:38 CST)
- Re: Re: Topotools - limit to size of system it can be used for? John Stone (Wed Feb 08 2012 - 10:06:45 CST)
- Re: Topotools - limit to size of system it can be used for? Michael Doig (Wed Feb 15 2012 - 04:21:28 CST)
- Re: Topotools - limit to size of system it can be used for? Michael Doig (Tue Jan 24 2012 - 08:00:46 CST)
- Re: Topotools - limit to size of system it can be used for? Axel Kohlmeyer (Tue Jan 24 2012 - 07:13:27 CST)
- ImportError: cannot import name AtomSel Wim R. Cardoen (Mon Jan 23 2012 - 15:36:19 CST)
- Calling all DCD files in a directory sequentially using CatDCD Bryan Roessler (Mon Jan 23 2012 - 15:11:34 CST)
- script to modify cysteines with spinlabel Anna Kuznetsova (Mon Jan 23 2012 - 14:55:50 CST)
- VMD and Centos 6 Irene Newhouse (Sat Jan 21 2012 - 22:49:47 CST)
- ERROR) measure gofr: bad frame range given. max jeela keel (Fri Jan 20 2012 - 14:43:13 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 08:09:54 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 09:29:37 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 09:56:43 CST)
- Re: ERROR) measure gofr: bad frame range given. max John Stone (Mon Jan 23 2012 - 10:01:36 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 11:18:04 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 11:35:59 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 11:55:22 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 12:45:22 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 12:51:41 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 12:55:54 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 14:13:02 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 15:06:10 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 16:25:37 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 11:53:04 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 09:29:37 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 08:09:54 CST)
- is it possible to hide ONLY non-polar hydrogens? Albert (Fri Jan 20 2012 - 03:54:32 CST)
- (no subject) vaneeta bala (Fri Jan 20 2012 - 01:11:06 CST)
- ionic radii of sodium and chloride Zumot, Elia Nabil (Thu Jan 19 2012 - 20:12:38 CST)
- Re: ionic radii of sodium and chloride Axel Kohlmeyer (Thu Jan 19 2012 - 21:12:49 CST)
- RE: ionic radii of sodium and chloride Zumot, Elia Nabil (Fri Jan 20 2012 - 10:57:19 CST)
- Re: ionic radii of sodium and chloride Axel Kohlmeyer (Fri Jan 20 2012 - 11:03:06 CST)
- Re: ionic radii of sodium and chloride John Stone (Fri Jan 20 2012 - 14:05:58 CST)
- RE: ionic radii of sodium and chloride Zumot, Elia Nabil (Fri Jan 20 2012 - 19:55:53 CST)
- Re: ionic radii of sodium and chloride Axel Kohlmeyer (Fri Jan 20 2012 - 20:17:22 CST)
- RE: ionic radii of sodium and chloride Cosseddu, Salvatore (Sun Jan 22 2012 - 15:27:30 CST)
- Re: ionic radii of sodium and chloride John Stone (Tue Jan 24 2012 - 15:23:04 CST)
- Re: ionic radii of sodium and chloride Alexander Balaeff (Fri Jan 20 2012 - 13:59:55 CST)
- RE: ionic radii of sodium and chloride Zumot, Elia Nabil (Fri Jan 20 2012 - 10:57:19 CST)
- Re: ionic radii of sodium and chloride Axel Kohlmeyer (Thu Jan 19 2012 - 21:12:49 CST)
- Generating a psf file using VMD Ganesh Kamath (Thu Jan 19 2012 - 16:56:47 CST)
- rendering question Alex Angerhofer (Thu Jan 19 2012 - 10:56:59 CST)
- Use "Metal complexes/FeS-clusters" in VMD paratool Jiajian Li (Wed Jan 18 2012 - 16:01:10 CST)
- Haptic devices for IMD gpat_at_bioacademy.gr (Wed Jan 18 2012 - 09:56:21 CST)
- New "surf" calculations in VMD 1.9.1 beta FX (Wed Jan 18 2012 - 06:12:08 CST)
- Using threads in VMD's tcl Vctor (Tue Jan 17 2012 - 10:04:57 CST)
- Question regarding HBond analysis Ganesh Kamath (Mon Jan 16 2012 - 17:05:19 CST)
- using vmd to apply symmetry transformations Bennion, Brian (Fri Jan 13 2012 - 09:21:39 CST)
- Yet another python question: how to run a python script from the vmd console ? maria goranovic (Fri Jan 13 2012 - 05:04:16 CST)
- precompiled python libraries still work for vmd 1.9 maria goranovic (Fri Jan 13 2012 - 04:50:12 CST)
- using fit_angle.py over a trajectory maria goranovic (Fri Jan 13 2012 - 03:36:26 CST)
- Problems in setting up low pH systems Sheng, Zi-Zhang (Wed Jan 11 2012 - 10:03:10 CST)
- camera position and scale Arham Amouie (Mon Jan 09 2012 - 08:09:46 CST)
- Implicit Ligand Sampling-molecule rotation issue Aaron Oakley (Sun Jan 08 2012 - 18:30:08 CST)
- vmd-density-profile subrata paul (Sat Jan 07 2012 - 07:11:26 CST)
- method for user-defined coloring JhonY. I. (Fri Jan 06 2012 - 11:53:37 CST)
- Coloring by RMSD during trajectory Joseph Bylund (Fri Jan 06 2012 - 11:40:27 CST)
- vmd 1.9.1 beta - quicksurf rendering artifacts Ajasja Ljubetič (Wed Jan 04 2012 - 05:08:18 CST)
- select whole residues Peter C. Lai (Tue Jan 03 2012 - 17:50:00 CST)
- represent water molecules oguz gurbulak (Mon Jan 02 2012 - 05:48:41 CST)
- external field application sarah k (Sun Jan 01 2012 - 03:57:21 CST)
- CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua D. Moore (Fri Dec 30 2011 - 19:07:05 CST)
- Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua D. Moore (Fri Dec 30 2011 - 19:30:45 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Thu Jan 05 2012 - 15:14:17 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua D. Moore (Wed Jan 11 2012 - 19:09:50 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Thu Jan 12 2012 - 10:48:06 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Fri Jan 13 2012 - 14:52:45 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua A. Anderson (Thu Jan 19 2012 - 12:47:21 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Thu Jan 19 2012 - 13:07:25 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Axel Kohlmeyer (Thu Jan 19 2012 - 13:55:04 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua A. Anderson (Thu Jan 19 2012 - 14:02:42 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Wed Jan 25 2012 - 09:59:13 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua A. Anderson (Wed Jan 25 2012 - 14:50:27 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Thu Jan 05 2012 - 15:14:17 CST)
- Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua D. Moore (Fri Dec 30 2011 - 19:30:45 CST)
- VMD 1.9.1 beta 1 posted for download... John Stone (Fri Dec 30 2011 - 01:02:15 CST)
- using xtc file to generate pdb's J. Matthew Franklin (Tue Dec 27 2011 - 15:38:23 CST)
- paratool CHARMM style charges Adrian Jasiski (Tue Dec 27 2011 - 08:24:49 CST)
- problem generating NAD Magnus Andersson (Fri Dec 23 2011 - 13:37:19 CST)
- Parse Fep plugin error Joseph Antoine Garate (Fri Dec 23 2011 - 08:27:39 CST)
- Change Color Scale Joshua D. Moore (Wed Dec 21 2011 - 13:57:10 CST)
- Ionization Yu Zhou (Tue Dec 20 2011 - 21:23:41 CST)
- Hbond analysis George Tzotzos (Tue Dec 20 2011 - 13:46:38 CST)
- Protein-ligand contact flavio seixas (Tue Dec 20 2011 - 08:10:15 CST)
- I: vmd on windows Sergio Decherchi (Tue Dec 20 2011 - 07:48:55 CST)
- Re: I: vmd on windows Sergio Decherchi (Tue Dec 20 2011 - 16:18:14 CST)
- Re: I: vmd on windows John Stone (Thu Dec 29 2011 - 22:21:19 CST)
- R: I: vmd on windows Sergio Decherchi (Tue Jan 03 2012 - 05:42:56 CST)
- Re: R: I: vmd on windows John Stone (Tue Jan 03 2012 - 10:06:38 CST)
- surface potential on an externally loaded msms surface Sergio Decherchi (Fri Jan 27 2012 - 11:52:12 CST)
- Re: surface potential on an externally loaded msms surface John Stone (Fri Jan 27 2012 - 15:39:03 CST)
- Re: surface potential on an externally loaded msms surface Sergio Decherchi (Sat Jan 28 2012 - 05:57:10 CST)
- Re: surface potential on an externally loaded msms surface John Stone (Sat Jan 28 2012 - 10:38:49 CST)
- Re: surface potential on an externally loaded msms surface Sergio Decherchi (Sat Jan 28 2012 - 14:22:10 CST)
- Re: surface potential on an externally loaded msms surface John Stone (Wed Feb 01 2012 - 16:21:39 CST)
- Re: surface potential on an externally loaded msms surface Sergio Decherchi (Thu Feb 02 2012 - 02:59:49 CST)
- Re: I: vmd on windows John Stone (Thu Dec 29 2011 - 22:21:19 CST)
- Re: I: vmd on windows Sergio Decherchi (Tue Dec 20 2011 - 16:18:14 CST)
- Re: About open file .pdbqt in VMD software John Stone (Mon Dec 19 2011 - 17:29:30 CST)
- VMD on Windows64 Mirco Wahab (Mon Dec 19 2011 - 16:51:45 CST)
- VMD stereo for NVidia Quadro 5000? Alexander Balaeff (Mon Dec 19 2011 - 12:07:18 CST)
- Assign velocities so I can color by velocity Joshua D. Moore (Mon Dec 19 2011 - 10:48:36 CST)
- vmd-l DynamicBond between two given type of atoms Salvatore Mario Cosseddu (Mon Dec 19 2011 - 10:44:17 CST)
- Re: vmd-l DynamicBond between two given type of atoms Axel Kohlmeyer (Mon Dec 19 2011 - 12:08:37 CST)
- vmd ligand fluctuation analysis Ban Arn (Fri Dec 16 2011 - 09:28:41 CST)
- vmd on windows Sergio Decherchi (Fri Dec 16 2011 - 09:16:42 CST)
- Multiple Stream Files: What Order? Bryan Roessler (Wed Dec 14 2011 - 11:20:25 CST)
- Solvating with Nonaqueous Solvent Rajan Vatassery (Tue Dec 13 2011 - 12:46:50 CST)
- package MDEnergy menica dibenedetto (Tue Dec 13 2011 - 12:13:02 CST)
- Povray renders labels always centered Bjoern Olausson (Mon Dec 12 2011 - 01:37:04 CST)
- Re: VMD and 3D visualization problems with Nvidia Quadro 4000 Karel Berka (Sat Dec 10 2011 - 15:29:36 CST)
- get Ramachadran plot using textmode Gurunath Katagi (Fri Dec 09 2011 - 22:00:28 CST)
- Tachyon render problem Tre Han Balta (Fri Dec 09 2011 - 02:45:09 CST)
- RE: TCL strangeness Gianluca Interlandi (Thu Dec 08 2011 - 20:27:28 CST)
- Tip to start VMD with external terminal Gianluca Interlandi (Thu Dec 08 2011 - 16:06:27 CST)
- to use tcl script in command line Sangita Kachhap (Thu Dec 08 2011 - 04:14:59 CST)
- Coloring particular atom with particular index Tre Han Balta (Wed Dec 07 2011 - 11:51:00 CST)
- Analyzing a 10ns simulation on Mac aborts Anthony Rey (Tue Dec 06 2011 - 23:25:17 CST)
- Script for Angular Distribution Function? David Cohen-Tanugi (Tue Dec 06 2011 - 09:45:36 CST)
- mmView - a tool for mmCIF exploration Daniel Svozil (Tue Dec 06 2011 - 05:38:03 CST)
- topology and parameter files for H2 and O2 Yungok Ihm (Tue Dec 06 2011 - 03:52:31 CST)
- Binding site similarity Ban Arn (Mon Dec 05 2011 - 09:51:55 CST)
- Improve OFF plugin: handle colors FX (Mon Dec 05 2011 - 07:20:06 CST)
- Rendering long and high-quality movies from VMD David Cohen-Tanugi (Sun Dec 04 2011 - 21:35:40 CST)
- Re: out-of-order writegmx with topotools 1.2 Axel Kohlmeyer (Sat Dec 03 2011 - 18:18:38 CST)
- Viewing System of Molecules where coordinates are in text file. Joey Vella (Thu Dec 01 2011 - 20:43:45 CST)
- How to disable CUDA in VMD-1.9? Joaim Swedberg (Wed Nov 30 2011 - 20:29:48 CST)
- Reading the SMD information form the log file Molybdos Kirkimpolakis (Wed Nov 30 2011 - 14:54:45 CST)
- Get the camera position SAPAY Nicolas 232321 (Wed Nov 30 2011 - 10:20:52 CST)
- Re: simulation bharat gupta (Wed Nov 30 2011 - 05:50:56 CST)
- convertind dcd to xyz file siladitya mukherjee (Tue Nov 29 2011 - 16:39:22 CST)
- Save pdb with original numbering Ricardo Soares (Tue Nov 29 2011 - 05:47:33 CST)
- Can Catdcd Write Out Periodic Cell Size Information? Tessa Young (Mon Nov 28 2011 - 01:20:31 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Pablo M. De Biase (Mon Nov 28 2011 - 10:39:55 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Axel Kohlmeyer (Mon Nov 28 2011 - 11:45:47 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Jeffrey Potoff (Mon Nov 28 2011 - 15:00:35 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Pablo M. De Biase (Mon Nov 28 2011 - 16:11:36 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Axel Kohlmeyer (Mon Nov 28 2011 - 17:13:02 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Pablo M. De Biase (Mon Nov 28 2011 - 17:41:40 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Tessa Young (Tue Nov 29 2011 - 23:06:25 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Jeffrey Potoff (Mon Nov 28 2011 - 15:00:35 CST)
- vmd solvate Pavan Ghatty (Sun Nov 27 2011 - 13:56:17 CST)
- tcl script Ban Arn (Fri Nov 25 2011 - 12:16:47 CST)
- average structure script flavio seixas (Fri Nov 25 2011 - 09:52:40 CST)
- q4md-forcefieldtools.org announcement FyD (Fri Nov 25 2011 - 07:33:39 CST)
- VMD never finishes reading vis. state file, stalls and hoggs CPU Bjoern Olausson (Fri Nov 25 2011 - 00:51:07 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Ajasja Ljubetič (Fri Nov 25 2011 - 05:05:32 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Axel Kohlmeyer (Fri Nov 25 2011 - 09:38:01 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Bjoern Olausson (Mon Nov 28 2011 - 02:54:17 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Axel Kohlmeyer (Mon Nov 28 2011 - 10:21:20 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU John Stone (Wed Nov 30 2011 - 09:50:16 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Bjoern Olausson (Wed Nov 30 2011 - 10:11:53 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Bjoern Olausson (Mon Nov 28 2011 - 02:54:17 CST)
- POPE CHARMM36 generations error. mail gromacs (Thu Nov 24 2011 - 13:13:02 CST)
- how to convert Desmond trajectories into PDB in text mode? mail gromacs (Thu Nov 24 2011 - 13:09:40 CST)
- How to save Automatic psf builder script flavio seixas (Thu Nov 24 2011 - 12:03:15 CST)
- VMD STRIDE not functional after operating system upgrade Vlad Cojocaru (Thu Nov 24 2011 - 08:50:40 CST)
- Change coordinates Andrs Morales (Thu Nov 24 2011 - 02:14:02 CST)
- Translocate molecule within a box rainy908 (Wed Nov 23 2011 - 19:51:03 CST)
- clip plane and cpk / VdW Philippe Bopp / temporary (Wed Nov 23 2011 - 04:48:33 CST)
- Rebuilding psf file Siew Wen Leong (Wed Nov 23 2011 - 04:45:38 CST)
- Spam from my email hanif mahboobi (Wed Nov 23 2011 - 03:38:19 CST)
- (no subject) hanif mahboobi (Tue Nov 22 2011 - 21:55:31 CST)
- (no subject) hanif mahboobi (Tue Nov 22 2011 - 18:19:50 CST)
- Radial distribution function in VMD Chirag Vora (Tue Nov 22 2011 - 12:01:52 CST)
- bash scripts quits after few frames Jorgen Simonsen (Tue Nov 22 2011 - 03:55:02 CST)
- VMD and R Thomas Bishop (Mon Nov 21 2011 - 14:42:44 CST)
- compile VMD 1.9 with FLTK 1.3 Vlad Cojocaru (Mon Nov 21 2011 - 06:37:19 CST)
- movie out of principal component analysis maria goranovic (Mon Nov 21 2011 - 04:35:44 CST)
- Re: movie out of principal component analysis Davide Provasi (Mon Nov 21 2011 - 12:37:44 CST)
- Re: movie out of principal component analysis maria goranovic (Tue Nov 22 2011 - 06:04:46 CST)
- Re: movie out of principal component analysis Axel Kohlmeyer (Tue Nov 22 2011 - 08:10:39 CST)
- Re: movie out of principal component analysis Vlad Cojocaru (Tue Nov 22 2011 - 08:13:29 CST)
- Re: movie out of principal component analysis maria goranovic (Wed Nov 23 2011 - 04:25:08 CST)
- Re: movie out of principal component analysis Ahmet Bakan (Wed Nov 23 2011 - 21:27:45 CST)
- Re: movie out of principal component analysis maria goranovic (Tue Nov 22 2011 - 06:04:46 CST)
- Re: movie out of principal component analysis Davide Provasi (Mon Nov 21 2011 - 12:37:44 CST)
- 'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, February 11-15, 2012 in Urbana, Illinois David Brandon (Thu Nov 17 2011 - 13:53:59 CST)
- Installation problems with VMD 1.9 PaulW (Thu Nov 17 2011 - 07:17:44 CST)
- Patching Glu/N-terminus peptide bond type bond Joaim Swedberg (Wed Nov 16 2011 - 17:41:38 CST)
- Maximum length of an extended peptide? Aaron Oakley (Tue Nov 15 2011 - 17:53:14 CST)
- Mac OS X 64 bit Issues Andrew Fenley (Tue Nov 15 2011 - 15:00:56 CST)
- VMD slows down at multiple windows lam nguyen (Mon Nov 14 2011 - 16:51:46 CST)
- Re: VMD slows down at multiple windows Ajasja Ljubetič (Tue Nov 15 2011 - 03:08:28 CST)
- Re: VMD slows down at multiple windows lam nguyen (Wed Nov 16 2011 - 22:20:54 CST)
- Re: VMD slows down at multiple windows Peter C. Lai (Thu Nov 17 2011 - 00:35:13 CST)
- RE: VMD slows down at multiple windows Tristan Croll (Thu Nov 17 2011 - 00:29:45 CST)
- Re: VMD slows down at multiple windows lam nguyen (Thu Nov 17 2011 - 11:16:10 CST)
- Re: VMD slows down at multiple windows John Stone (Thu Nov 17 2011 - 13:30:06 CST)
- Re: VMD slows down at multiple windows lam nguyen (Thu Nov 17 2011 - 14:01:51 CST)
- Re: VMD slows down at multiple windows lam nguyen (Thu Nov 17 2011 - 14:05:18 CST)
- Re: VMD slows down at multiple windows John Stone (Thu Nov 17 2011 - 14:13:49 CST)
- Re: VMD slows down at multiple windows lam nguyen (Thu Nov 17 2011 - 14:20:41 CST)
- Re: VMD slows down at multiple windows Gianluca Interlandi (Thu Nov 17 2011 - 16:32:09 CST)
- Re: VMD slows down at multiple windows John Stone (Fri Nov 18 2011 - 11:18:44 CST)
- Re: VMD slows down at multiple windows lam nguyen (Fri Nov 18 2011 - 12:43:30 CST)
- Re: VMD slows down at multiple windows lam nguyen (Fri Nov 18 2011 - 13:42:12 CST)
- Re: VMD slows down at multiple windows lam nguyen (Wed Nov 16 2011 - 22:20:54 CST)
- Re: VMD slows down at multiple windows John Stone (Wed Nov 16 2011 - 12:56:18 CST)
- Re: VMD slows down at multiple windows Ajasja Ljubetič (Tue Nov 15 2011 - 03:08:28 CST)
- pbc wrap Hitesh Patel (Mon Nov 14 2011 - 08:48:42 CST)
- (no subject) niaz poorgholami (Fri Nov 11 2011 - 22:02:25 CST)
- Volume Slice + Coloring by volume problem in MacOsx (REPOST) Passerone, Daniele (Fri Nov 11 2011 - 15:06:27 CST)
- how to place polymers on carbon nanotube surface niaz poorgholami (Fri Nov 11 2011 - 12:31:47 CST)
- Save "Visulaization State" from within Tk Console Bjoern Olausson (Fri Nov 11 2011 - 07:41:18 CST)
- Re: Save "Visulaization State" from within Tk Console Bjoern Olausson (Fri Nov 11 2011 - 07:48:03 CST)
- Re: Save "Visulaization State" from within Tk Console Axel Kohlmeyer (Fri Nov 11 2011 - 08:41:38 CST)
- Re: Save "Visulaization State" from within Tk Console John Stone (Fri Nov 11 2011 - 09:20:43 CST)
- UPDATE OCCUPANCY Jordi Faraudo (Fri Nov 11 2011 - 06:04:50 CST)
- RMSD Tool failes with MOL ID > 999 Bjoern Olausson (Fri Nov 11 2011 - 05:52:11 CST)
- Couldn't locate ppmtompeg Rabab Toubar (Thu Nov 10 2011 - 14:57:58 CST)
- installing and running VMD on Windows 64-bit Rabab Toubar (Thu Nov 10 2011 - 09:17:54 CST)
- pbwithin selection arash azari (Thu Nov 10 2011 - 07:58:28 CST)
- Adding an atom to existing trajectory (to enable RDF from centre of mass of a selection) Sam Wallace (Wed Nov 09 2011 - 16:38:39 CST)
- How to parse very large trajectories? Aleksandr Kivenson (Wed Nov 09 2011 - 14:41:55 CST)
- Suppress "Info)" messages Bjoern Olausson (Mon Nov 07 2011 - 11:56:06 CST)
- tcl procedure to set data Casey Johnson (Sun Nov 06 2011 - 19:26:25 CST)
- blank output sarah k (Sun Nov 06 2011 - 09:34:39 CST)
- lipid bilayer thickness Andrs Morales (Sun Nov 06 2011 - 00:07:36 CDT)
- tkinter load problem in VMD Gianluca Interlandi (Sun Nov 06 2011 - 00:04:42 CDT)
- Batch image creation Juan Antonio Raygoza Garay (Fri Nov 04 2011 - 16:59:57 CDT)
- Secondary structure elements in VMD Rabab Toubar (Fri Nov 04 2011 - 16:03:26 CDT)
- find avgstruct hamze rahimi (Fri Nov 04 2011 - 04:30:38 CDT)
- Volume Slice + Coloring by volume problem in MacOsx Passerone, Daniele (Fri Nov 04 2011 - 00:31:15 CDT)
- How to understand the occupancy? lina (Thu Nov 03 2011 - 09:06:06 CDT)
- radius of gyration ban arn (Wed Nov 02 2011 - 14:41:09 CDT)
- Re: namd-l: selection of cholesterol molecules Chris Harrison (Wed Nov 02 2011 - 00:06:35 CDT)
- Use of RBCG to convert multiple frames from atomistic trajectory to Coarse grained rohan uttarwar (Tue Nov 01 2011 - 16:17:08 CDT)
- Finding resname without using atomselect? Casey Johnson (Tue Nov 01 2011 - 15:46:28 CDT)
- graphical representation kirtana S (Tue Nov 01 2011 - 12:21:29 CDT)
- rlwrap problem on Frank Barry (Tue Nov 01 2011 - 10:50:26 CDT)
- H-bond distance measurement Aditya Padhi (Tue Nov 01 2011 - 03:53:57 CDT)
- VRPN-ICMS conflict with NVidia driver Tristan Croll (Tue Nov 01 2011 - 02:16:14 CDT)
- Re: VRPN-ICMS conflict with NVidia driver Axel Kohlmeyer (Tue Nov 01 2011 - 08:15:36 CDT)
- RE: VRPN-ICMS conflict with NVidia driver Tristan Croll (Tue Nov 01 2011 - 19:03:55 CDT)
- Re: VRPN-ICMS conflict with NVidia driver Axel Kohlmeyer (Tue Nov 01 2011 - 19:08:07 CDT)
- RE: VRPN-ICMS conflict with NVidia driver Tristan Croll (Tue Nov 01 2011 - 19:28:51 CDT)
- RE: VRPN-ICMS conflict with NVidia driver Tristan Croll (Wed Nov 16 2011 - 19:04:38 CST)
- Re: VRPN-ICMS conflict with NVidia driver John Stone (Fri Nov 18 2011 - 01:49:18 CST)
- Re: VRPN-ICMS conflict with NVidia driver John Stone (Wed Nov 30 2011 - 09:22:56 CST)
- RE: VRPN-ICMS conflict with NVidia driver Tristan Croll (Tue Nov 01 2011 - 19:03:55 CDT)
- Re: VRPN-ICMS conflict with NVidia driver Axel Kohlmeyer (Tue Nov 01 2011 - 08:15:36 CDT)
- selection matziast_at_med.uth.gr (Mon Oct 31 2011 - 13:39:43 CDT)
- Dynamic lines Bogdan Costescu (Mon Oct 31 2011 - 13:21:59 CDT)
- selection matziast_at_med.uth.gr (Mon Oct 31 2011 - 12:45:50 CDT)
- move ligand around the protin Steven Neumann (Mon Oct 31 2011 - 10:46:07 CDT)
- Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets John Stone (Mon Oct 31 2011 - 10:12:15 CDT)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets Andrew Jewett (Thu Nov 03 2011 - 15:56:37 CDT)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets Andrew Jewett (Thu Nov 03 2011 - 16:07:46 CDT)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets John Stone (Fri Nov 11 2011 - 10:19:21 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets Gianluca Interlandi (Fri Nov 11 2011 - 12:30:08 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets John Stone (Fri Nov 11 2011 - 12:42:32 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets Gianluca Interlandi (Fri Nov 11 2011 - 13:01:17 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets John Stone (Fri Nov 11 2011 - 16:13:14 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets Andrew Jewett (Thu Nov 03 2011 - 15:56:37 CDT)
- Hi all, Bo Højen Justesen (Mon Oct 31 2011 - 05:47:22 CDT)
- Run a variable through VMD Tk/Tcl console .vmdrc file Anthony Rey (Sun Oct 30 2011 - 06:55:06 CDT)
- Run a variable through VMD Tk/Tcl console /// .vmdrc file Anthony Rey (Sun Oct 30 2011 - 06:14:22 CDT)
- About the syntax in Autopsf - Add Patch for PRES PLIG Francesco Pietra (Sun Oct 30 2011 - 03:28:27 CDT)
- Structure preparation via VMD James Starlight (Sat Oct 29 2011 - 07:29:33 CDT)
- Problem with Movie Maker Carolyn Phillips (Fri Oct 28 2011 - 17:41:12 CDT)
- Installing CATDCD on a Mac Michael LeVine (Fri Oct 28 2011 - 14:55:14 CDT)
- VMD crashes. Diego Javier Alonso de Armio (Fri Oct 28 2011 - 10:22:19 CDT)
- Adding a three letter residue name to VMD's protein recognition J. Nathan Scott (Thu Oct 27 2011 - 13:13:09 CDT)
- Is it possible to automatically label all bonds? Mike Wykes (Thu Oct 27 2011 - 11:43:18 CDT)
- Visualizing Timeline (tml) data w/o having to load trajectories Bryan Roessler (Thu Oct 27 2011 - 11:34:40 CDT)
- average pdb from dcd file hamze rahimi (Thu Oct 27 2011 - 07:39:53 CDT)
- Xenon binding site free energies Aaron Oakley (Thu Oct 27 2011 - 01:30:23 CDT)
- Problem vmd 1.9 plus Cave Christian Wohlschlager (Thu Oct 27 2011 - 01:12:09 CDT)
- Compiling vmd 1.9 plugins Matt Fioravante (Wed Oct 26 2011 - 12:55:22 CDT)
- Selecting Atoms within a Volume, Manipulating Volumetric Data Michael LeVine (Sun Oct 23 2011 - 14:24:20 CDT)
- Calculating parameters in lipid bilayers Andrs Morales (Thu Oct 20 2011 - 22:04:03 CDT)
- Thinkpad X120e with Linux and VMD Gianluca Interlandi (Thu Oct 20 2011 - 19:48:32 CDT)
- coloring bonds on the same segments differently from those between segments lam nguyen (Thu Oct 20 2011 - 19:07:42 CDT)
- superimposing groups of three atoms bio lab (Thu Oct 20 2011 - 06:25:46 CDT)
- calculation hydrogen bond. subrata paul (Thu Oct 20 2011 - 02:19:04 CDT)
- area per lipid Andrs Morales (Thu Oct 20 2011 - 01:12:14 CDT)
- Error running IED Manish (Tue Oct 18 2011 - 13:39:09 CDT)
- angle calculation trajectory Peyman Z.Moghadam (Tue Oct 18 2011 - 12:28:16 CDT)
- atomselect and macro Molybdos Kirkimpolakis (Sat Oct 15 2011 - 15:34:59 CDT)
- Error running IED with VMD Manish (Fri Oct 14 2011 - 08:47:17 CDT)
- hbond analysis subrata paul (Fri Oct 14 2011 - 04:11:46 CDT)
- Installing VMD on Debian Linux James Starlight (Fri Oct 14 2011 - 01:51:01 CDT)
- Using two color scales in one scene Robert Johnson (Thu Oct 13 2011 - 14:23:02 CDT)
- How to select whole residues when at least one atom is within a specific distance Michael LeVine (Thu Oct 13 2011 - 12:48:43 CDT)
- topotools kirtana S (Wed Oct 12 2011 - 15:45:13 CDT)
- Uniform Distribution of drug molecules in water meisam valizadeh kiamahalleh (Wed Oct 12 2011 - 09:35:03 CDT)
- Re: query about "ViewChangeRender" plugin harish vashisth (Tue Oct 11 2011 - 10:42:09 CDT)
- query about "ViewChangeRender" plugin harish vashisth (Mon Oct 10 2011 - 17:04:45 CDT)
- amber traj to pqr - radii error Jesper Soerensen (Mon Oct 10 2011 - 12:42:30 CDT)
- alignment problem Markus K. Dahlgren (Mon Oct 10 2011 - 10:29:40 CDT)
- centering problem in trajectory tool Markus K. Dahlgren (Mon Oct 10 2011 - 08:59:11 CDT)
- RE: centering problem in trajectory tool Zumot, Elia Nabil (Mon Oct 10 2011 - 11:19:48 CDT)
- RE: centering problem in trajectory tool Markus K. Dahlgren (Mon Oct 10 2011 - 15:09:35 CDT)
- RE: centering problem in trajectory tool Zumot, Elia Nabil (Mon Oct 10 2011 - 15:34:54 CDT)
- RE: centering problem in trajectory tool Markus K. Dahlgren (Mon Oct 17 2011 - 17:46:26 CDT)
- RE: centering problem in trajectory tool Zumot, Elia Nabil (Mon Oct 17 2011 - 17:58:49 CDT)
- RE: centering problem in trajectory tool Markus K. Dahlgren (Mon Oct 17 2011 - 18:46:35 CDT)
- RE: centering problem in trajectory tool Markus K. Dahlgren (Mon Oct 10 2011 - 15:09:35 CDT)
- RE: centering problem in trajectory tool Zumot, Elia Nabil (Mon Oct 10 2011 - 11:19:48 CDT)
- Re: VMD fails to start/stalls/crashes on AMD workstation with Quadro FX 3800 Vlad Cojocaru (Fri Oct 07 2011 - 07:50:19 CDT)
- (no subject) denilson_at_dqi.ufla.br (Thu Oct 06 2011 - 15:12:44 CDT)
- RMSD vs RMSF Rabab Toubar (Thu Oct 06 2011 - 14:22:09 CDT)
- water bridged H-bond calculation Hitesh Patel (Thu Oct 06 2011 - 07:17:26 CDT)
- Solvating hexagonal unit cell Leandro Barros da Silva (Wed Oct 05 2011 - 13:00:27 CDT)
- VMD fails to start/stalls/crashes on AMD workstation with Quadro FX 3800 Vlad Cojocaru (Wed Oct 05 2011 - 06:47:08 CDT)
- unable to load Amber trajectories to visualize-Coordinate I/O rate 0 frames/sec, 0 MB/sec, 32.4 sec -Please help hongphuc nguyen (Wed Oct 05 2011 - 03:30:58 CDT)
- Fw: denilson_at_dqi.ufla.br (Mon Oct 03 2011 - 11:18:01 CDT)
- (no subject) denilson_at_dqi.ufla.br (Mon Oct 03 2011 - 08:56:08 CDT)
- solvent_box_type lara lara (Sat Oct 01 2011 - 08:13:43 CDT)
- GPU choice for large systems Dmitry Osolodkin (Sat Oct 01 2011 - 06:39:16 CDT)
- Re: GPU choice for large systems Axel Kohlmeyer (Sat Oct 01 2011 - 07:58:19 CDT)
- Re: GPU choice for large systems Dmitry Osolodkin (Sat Oct 01 2011 - 08:37:43 CDT)
- Re: GPU choice for large systems Axel Kohlmeyer (Sat Oct 01 2011 - 08:53:36 CDT)
- Re: GPU choice for large systems John Stone (Sat Oct 01 2011 - 21:26:37 CDT)
- Re: GPU choice for large systems Thomas Bishop (Wed Oct 05 2011 - 14:28:45 CDT)
- Re: GPU choice for large systems John Stone (Fri Nov 11 2011 - 12:41:03 CST)
- Re: GPU choice for large systems John Stone (Sat Oct 01 2011 - 21:20:18 CDT)
- Re: GPU choice for large systems Dmitry Osolodkin (Sat Oct 01 2011 - 08:37:43 CDT)
- Re: GPU choice for large systems Axel Kohlmeyer (Sat Oct 01 2011 - 07:58:19 CDT)
- methanol_solvent box lara lara (Sat Oct 01 2011 - 05:45:32 CDT)
- mutator plugin generates extra bond for tip3 Burgess, Don E (Fri Sep 30 2011 - 11:49:26 CDT)
- H Bond Plug-in Questions Alex Hahn (Thu Sep 29 2011 - 11:53:13 CDT)
- VMD meets Andy Warhol/Campbell's Soup on display wall Thomas Bishop (Wed Sep 28 2011 - 18:43:14 CDT)
- Re: VMD meets Andy Warhol/Campbell's Soup on display wall Axel Kohlmeyer (Wed Sep 28 2011 - 19:46:03 CDT)
- Re: VMD meets Andy Warhol/Campbell's Soup on display wall John Stone (Fri Sep 30 2011 - 12:19:23 CDT)
- VMD with LAMMPS trjaectory - help? jgrime_at_uchicago.edu (Wed Sep 28 2011 - 18:20:36 CDT)
- vmd topotools 1.2 error oguz gurbulak (Wed Sep 28 2011 - 09:05:17 CDT)
- vmd topotools 1.2 error oguz gurbulak (Wed Sep 28 2011 - 06:41:37 CDT)
- Re: question on "Recompile VMD with larger index types" Axel Kohlmeyer (Wed Sep 28 2011 - 05:44:13 CDT)
- Re: Selecting a laptop for VMD and NAMD Paweł Kędzierski (Wed Sep 28 2011 - 04:07:30 CDT)
- question on "Recompile VMD with larger index types" JhonY. I. (Wed Sep 28 2011 - 00:50:33 CDT)
- Associating .crd file extension with COR Plugin Vadim Patsalo (Tue Sep 27 2011 - 21:08:31 CDT)
- connectivity in RBCG file(pdb extension) ANURAG JHA (Tue Sep 27 2011 - 18:46:20 CDT)
- Associating .crd file extension with COR Plugin. Vadim Patsalo (Tue Sep 27 2011 - 16:58:50 CDT)
- problem of exceeding max atom number JhonY. I. (Tue Sep 27 2011 - 12:51:43 CDT)
- Re: Selecting a laptop for VMD and NAMD (was: CUDA cores seen by VMD on GT540M) Paweł Kędzierski (Tue Sep 27 2011 - 09:29:31 CDT)
- convert .coor to pdb matziast_at_med.uth.gr (Mon Sep 26 2011 - 06:08:24 CDT)
- RDF related problems siladitya mukherjee (Sat Sep 24 2011 - 15:17:37 CDT)
- Epsilon, Rmin for copper ions Francesco Pietra (Sat Sep 24 2011 - 03:55:34 CDT)
- Fwd: Copper ions paratool Francesco Pietra (Fri Sep 23 2011 - 10:12:04 CDT)
- Fwd: Saved project and paratool Francesco Pietra (Fri Sep 23 2011 - 06:00:05 CDT)
- stream files and paratool Francesco Pietra (Fri Sep 23 2011 - 03:10:52 CDT)
- Locked files in Windows 7 Ignacio Fernndez Galvn (Thu Sep 22 2011 - 06:08:13 CDT)
- Quick TCl scripting question Anthony Rey (Wed Sep 21 2011 - 22:49:02 CDT)
- redirecting to output kirtana S (Wed Sep 21 2011 - 13:31:52 CDT)
- radial pair distribution problems aiswarya pawar (Wed Sep 21 2011 - 01:27:50 CDT)
- NetCDF plugin Alexandr Kornev (Tue Sep 20 2011 - 17:55:59 CDT)
- extra characters kirtana S (Tue Sep 20 2011 - 10:54:07 CDT)
- Problem with measuring dihedrals Jernej Zidar (Tue Sep 20 2011 - 03:47:24 CDT)
- Problem building POPE membrane with plugin using CHARMM36 Maggie Pruitt (Mon Sep 19 2011 - 12:19:41 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 John Stone (Wed Sep 21 2011 - 11:32:57 CDT)
- RE: Problem building POPE membrane with plugin using CHARMM36 JC Gumbart (Wed Sep 21 2011 - 11:44:00 CDT)
- RE: Problem building POPE membrane with plugin using CHARMM36 Zumot, Elia Nabil (Fri Oct 14 2011 - 11:18:25 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 John Stone (Fri Oct 14 2011 - 11:37:57 CDT)
- RE: Problem building POPE membrane with plugin using CHARMM36 Zumot, Elia Nabil (Fri Oct 14 2011 - 11:55:18 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 Axel Kohlmeyer (Fri Oct 14 2011 - 13:38:52 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 JC Gumbart (Fri Oct 14 2011 - 15:09:44 CDT)
- RE: Problem building POPE membrane with plugin using CHARMM36 JC Gumbart (Wed Sep 21 2011 - 11:44:00 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 John Stone (Wed Sep 21 2011 - 11:32:57 CDT)
- RMSD heatmapper -plugin Anssi Nurminen (Mon Sep 19 2011 - 12:03:51 CDT)
- select each element of array kirtana S (Mon Sep 19 2011 - 11:11:59 CDT)
- Adding water in protein madhumita das (Mon Sep 19 2011 - 06:01:15 CDT)
- bug in Hbond Option hamid mosaddeghi (Mon Sep 19 2011 - 00:37:41 CDT)
- topotools readvarxyz puroorava annapaneni (Sun Sep 18 2011 - 12:22:58 CDT)
- Creating a fragment of the given protein Trung Nguyen Duc (Sun Sep 18 2011 - 11:43:18 CDT)
- fonts for paratool Francesco Pietra (Sun Sep 18 2011 - 09:11:38 CDT)
- I can't not see my post in Archive list hongphuc nguyen (Sat Sep 17 2011 - 22:52:58 CDT)
- units on the volmap tool Raul Araya (Sat Sep 17 2011 - 00:26:04 CDT)
- color with name Yamei (Fri Sep 16 2011 - 11:56:03 CDT)
- A bug about "trans" command KM Tu (Fri Sep 16 2011 - 10:33:49 CDT)
- Clustering MD trajectories Vijay Vammi (Fri Sep 16 2011 - 08:13:49 CDT)
- Re: Clustering MD trajectories Hurt, Darrell (NIH/NIAID) [E] (Fri Sep 16 2011 - 10:17:54 CDT)
- Re: Clustering MD trajectories Vijay Vammi (Fri Sep 16 2011 - 10:39:40 CDT)
- Re: Clustering MD trajectories Vijay Vammi (Fri Sep 16 2011 - 14:52:47 CDT)
- Re: Clustering MD trajectories John Stone (Fri Sep 16 2011 - 15:02:59 CDT)
- Re: Clustering MD trajectories Vijay Vammi (Fri Sep 16 2011 - 15:42:45 CDT)
- Re: Clustering MD trajectories Anurag Sethi (Fri Sep 16 2011 - 17:04:29 CDT)
- Re: Clustering MD trajectories Vijay Vammi (Mon Sep 19 2011 - 14:33:34 CDT)
- Re: Clustering MD trajectories Kirby Vandivort (Wed Sep 21 2011 - 14:52:54 CDT)
- Re: Clustering MD trajectories Vijay Vammi (Wed Sep 21 2011 - 15:06:13 CDT)
- Re: Clustering MD trajectories Hurt, Darrell (NIH/NIAID) [E] (Fri Sep 16 2011 - 10:17:54 CDT)
- calculate the solvent molecule within a cut off from protein aiswarya pawar (Thu Sep 15 2011 - 05:36:25 CDT)
- Cionize Christian Wohlschlager (Thu Sep 15 2011 - 01:12:16 CDT)
- LINK or PACTH command in VMD snoze pa (Wed Sep 14 2011 - 11:48:53 CDT)
- Does Paratool support CgenFF? Alexandre Suman de Araujo (Wed Sep 14 2011 - 07:22:33 CDT)
- Showing and Calculating the amount of water molecules inside carbon nanotube meisam valizadeh kiamahalleh (Tue Sep 13 2011 - 22:23:13 CDT)
- 2011 VMD User Survey results are posted... John Stone (Tue Sep 13 2011 - 15:26:21 CDT)
- RDF calculation for production steps siladitya mukherjee (Tue Sep 13 2011 - 15:15:53 CDT)
- Bug in 'source' command or in for loop? dwds gerge (Tue Sep 13 2011 - 12:06:10 CDT)
- Showing and Calculating the amount of water molecules inside carbon nanotube meisam valizadeh kiamahalleh (Mon Sep 12 2011 - 22:18:48 CDT)
- linux issues Vivek Ranjan (Mon Sep 12 2011 - 11:01:25 CDT)
- Displaying residues on chain A within X of chain B Irene Newhouse (Fri Sep 09 2011 - 16:19:18 CDT)
- Re: Displaying residues on chain A within X of chain B Axel Kohlmeyer (Fri Sep 09 2011 - 17:51:33 CDT)
- RE: Displaying residues on chain A within X of chain B Mark Cunningham (Fri Sep 09 2011 - 20:40:36 CDT)
- cionize Christian Wohlschlager (Fri Sep 09 2011 - 02:10:28 CDT)
- output values in my script kirtana S (Thu Sep 08 2011 - 17:38:04 CDT)
- Visualization of FEP simulation Bruno Lus Pinto de Oliveira (Thu Sep 08 2011 - 12:38:41 CDT)
- Visualization of FEP simulation Bruno Lus Pinto de Oliveira (Thu Sep 08 2011 - 13:24:32 CDT)
- Visualization of FEP simulation Bruno Lus Pinto de Oliveira (Wed Oct 19 2011 - 09:04:06 CDT)
- Re: Visualization of FEP simulation Paweł Kędzierski (Thu Oct 20 2011 - 03:06:30 CDT)
- RE: Visualization of FEP simulation Bruno Lus Pinto de Oliveira (Thu Oct 20 2011 - 06:15:37 CDT)
- Re: Visualization of FEP simulation Pawel Kedzierski (Fri Oct 21 2011 - 04:26:51 CDT)
- RE: Visualization of FEP simulation Bruno Lus Pinto de Oliveira (Fri Oct 21 2011 - 12:37:34 CDT)
- Visualization of FEP simulation Bruno Lus Pinto de Oliveira (Wed Oct 19 2011 - 09:04:06 CDT)
- Visualization of FEP simulation Bruno Lus Pinto de Oliveira (Thu Sep 08 2011 - 13:24:32 CDT)
- Fwd: Pdb file generation,bad water removal and coordinates of psf. madhumita das (Wed Sep 07 2011 - 20:24:47 CDT)
- Visualizing Trajectory file: .pdb or .xyz winardi, erik (Wed Sep 07 2011 - 13:49:06 CDT)
- autoionize Jacopo Sgrignani (Wed Sep 07 2011 - 09:00:02 CDT)
- draw intersection volume between two spheres Filip Persson (Wed Sep 07 2011 - 08:30:33 CDT)
- TK console problem J. Matthew Franklin (Tue Sep 06 2011 - 22:40:26 CDT)
- VMD align to principal axis kirtana S (Tue Sep 06 2011 - 22:06:04 CDT)
- Count waters inside a specified box Manish (Tue Sep 06 2011 - 11:11:40 CDT)
- define water cavity using atom selection in graphical representations window Filip Persson (Tue Sep 06 2011 - 03:08:20 CDT)
- Re: define water cavity using atom selection in graphical representations window Hitesh Patel (Tue Sep 06 2011 - 04:20:35 CDT)
- Re: define water cavity using atom selection in graphical representations window Axel Kohlmeyer (Tue Sep 06 2011 - 05:11:00 CDT)
- plugin kirtana S (Mon Sep 05 2011 - 13:38:47 CDT)
- Density Profile in VMD oguz gurbulak (Mon Sep 05 2011 - 02:37:37 CDT)
- How to read pdbqt file? Chirag Vora (Sat Sep 03 2011 - 14:57:01 CDT)
- Re: namd-l: SASA of PBD files sajad falsafi (Sat Sep 03 2011 - 14:38:17 CDT)
- Radial distribution function Kartheek (Sat Sep 03 2011 - 10:10:03 CDT)
- Radial distribution function Kartheek (Sat Sep 03 2011 - 05:33:50 CDT)
- Re: Movie maker in VMD siladitya mukherjee (Thu Sep 01 2011 - 13:04:58 CDT)
- Movie maker in VMD siladitya mukherjee (Thu Sep 01 2011 - 11:11:15 CDT)
- Invitation to connect on LinkedIn Hideya Nakamura via LinkedIn (Wed Aug 31 2011 - 19:22:00 CDT)
- Fw: Hbond in VMD hamid mosaddeghi (Wed Aug 31 2011 - 12:29:01 CDT)
- Saving ionized.psf from add ions plug in of VMD Andrea Holfelder (Wed Aug 31 2011 - 10:35:45 CDT)
- pdb naming convention to get ribbon representation Casey Johnson (Wed Aug 31 2011 - 09:08:11 CDT)
- CUDA cores seen by VMD on GT540M Pawe Kdzierski (Wed Aug 31 2011 - 09:02:09 CDT)
- Hbond in VMD hamid mosaddeghi (Wed Aug 31 2011 - 03:12:47 CDT)
- Re: Fw: Lammps Output data format Axel Kohlmeyer (Tue Aug 30 2011 - 12:45:15 CDT)
- VMD display residues ban arn (Tue Aug 30 2011 - 12:14:35 CDT)
- Hbonds for a specific frame Hitesh Patel (Tue Aug 30 2011 - 11:47:23 CDT)
- VMD movie ban arn (Tue Aug 30 2011 - 10:31:58 CDT)
- Depletion of few atoms makkuva Ram vivek (Mon Aug 29 2011 - 22:16:16 CDT)
- loading a trajectory where particles aren't conservd Chris Knorowski (Mon Aug 29 2011 - 16:35:28 CDT)
- Lammps Output data format winardi, erik (Mon Aug 29 2011 - 12:20:31 CDT)
- 3d viz? Dave Schall (Mon Aug 29 2011 - 09:28:34 CDT)
- Water in binding site ban arn (Mon Aug 29 2011 - 04:47:53 CDT)
- Represent custom peptide as ribbon? Casey Johnson (Sat Aug 27 2011 - 09:24:07 CDT)
- vmd does not run on the VNC client peng liu (Thu Aug 25 2011 - 21:15:15 CDT)
- Fwd: Re: namd-l: How to evaluate the area per lipid and thickness of the lipid bilayer in a membrane-protein system? Vlad Cojocaru (Thu Aug 25 2011 - 02:14:15 CDT)
- Text in line with line Nuno Sousa Cerqueira (Wed Aug 24 2011 - 21:21:52 CDT)
- how to load Orient package in VMD Jiao, Dian NMN (-EXP) (Wed Aug 24 2011 - 15:24:42 CDT)
- Initial configuration reorientation Anna (Wed Aug 24 2011 - 11:48:38 CDT)
- convert pdb format to normal pdb format hamze rahimi (Wed Aug 24 2011 - 04:48:09 CDT)
- extrabonds Ling Wu (Tue Aug 23 2011 - 16:13:53 CDT)
- RMSD calculator extension George Tzotzos (Tue Aug 23 2011 - 08:59:19 CDT)
- Problem with psfgen Florian Mrugalla (Tue Aug 23 2011 - 07:41:02 CDT)
- Wrap PBC inside unit cell Casey Johnson (Mon Aug 22 2011 - 17:54:41 CDT)
- Fwd: Dowser plugin: Error message George Tzotzos (Mon Aug 22 2011 - 16:34:31 CDT)
- how to put two identical proteins in a same water sphere? juan jesus sanchez sanchez (Mon Aug 22 2011 - 13:06:12 CDT)
- DNA hairpin Shesh Nath (Sat Aug 20 2011 - 01:19:04 CDT)
- changing origin of rotation (NOT center of mass) Michael Daily (Fri Aug 19 2011 - 13:41:06 CDT)
- Turning Label Info output off in vmd console Sebastin Gutirrez (Thu Aug 18 2011 - 18:14:06 CDT)
- How can I draw secondary structures if I only have the carbon alpha coordinates Mert Gr (Thu Aug 18 2011 - 10:01:00 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates John Stone (Thu Aug 18 2011 - 11:48:01 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates Mert Gr (Thu Aug 18 2011 - 12:20:30 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates John Stone (Thu Aug 18 2011 - 12:36:30 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates Davide Provasi (Thu Aug 18 2011 - 13:00:15 CDT)
- RE: How can I draw secondary structures if I only have the carbon alpha coordinates Cojocaru, Vlad (Thu Aug 18 2011 - 14:46:45 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates Axel Kohlmeyer (Thu Aug 18 2011 - 13:27:42 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates Mert Gr (Thu Aug 18 2011 - 12:20:30 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates Tim Travers (Thu Aug 18 2011 - 12:26:14 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates John Stone (Thu Aug 18 2011 - 11:48:01 CDT)
- converting coarse grained POPC membranes to atomistic representation (AMBER, GAFF) Vlad Cojocaru (Thu Aug 18 2011 - 07:06:32 CDT)
- CatDcd Windows Version NAMITA BHADRA (Wed Aug 17 2011 - 23:52:28 CDT)
- how to rename a representation in vmd maria goranovic (Wed Aug 17 2011 - 04:18:42 CDT)
- changing label format with some arithmetic maria goranovic (Wed Aug 17 2011 - 04:05:19 CDT)
- Intel HD3000 versus ATI Mobility Radeon 6310 Gianluca Interlandi (Wed Aug 17 2011 - 00:09:01 CDT)
- MMTools Chathurika Abeyrathne (Tue Aug 16 2011 - 20:03:45 CDT)
- Spaceball navigator - making movies Michael Doig (Tue Aug 16 2011 - 06:16:42 CDT)
- visualizing unrealistic bonds Moeed (Mon Aug 15 2011 - 11:09:51 CDT)
- Re: visualizing unrealistic bonds John Stone (Mon Aug 15 2011 - 11:21:02 CDT)
- Re: visualizing unrealistic bonds Axel Kohlmeyer (Mon Aug 15 2011 - 12:07:13 CDT)
- Re: visualizing unrealistic bonds Magnus Andersson (Mon Aug 15 2011 - 14:26:08 CDT)
- Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Babban Mia (Sat Aug 13 2011 - 07:10:18 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Axel Kohlmeyer (Sat Aug 13 2011 - 08:22:08 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Babban Mia (Sat Aug 13 2011 - 08:42:09 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Axel Kohlmeyer (Sat Aug 13 2011 - 08:47:57 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Babban Mia (Sat Aug 13 2011 - 21:15:32 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Babban Mia (Sat Aug 13 2011 - 21:39:41 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Axel Kohlmeyer (Sun Aug 14 2011 - 00:09:28 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Babban Mia (Sat Aug 13 2011 - 08:42:09 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Axel Kohlmeyer (Sat Aug 13 2011 - 08:22:08 CDT)
- Maria Tziastoudi matziast_at_med.uth.gr (Sat Aug 13 2011 - 05:29:29 CDT)
- .COOR TO PDB FILE Babban Mia (Sat Aug 13 2011 - 01:11:48 CDT)
- Implicit Patch for Nucleic Acids? Stefan Franzen (Fri Aug 12 2011 - 13:46:24 CDT)
- Orienting a Protein Kapil Amarnath (Fri Aug 12 2011 - 11:19:31 CDT)
- how to wrap a protein with periodic waters Thomas Evangelidis (Fri Aug 12 2011 - 10:19:47 CDT)
- Maria Tziastoudi matziast_at_med.uth.gr (Fri Aug 12 2011 - 04:29:38 CDT)
- rmsf hamze rahimi (Fri Aug 12 2011 - 01:32:44 CDT)
- package require help hamze rahimi (Fri Aug 12 2011 - 01:31:22 CDT)
- Vmd Problem Sara baretller (Thu Aug 11 2011 - 15:49:08 CDT)
- Update selection every frame command Guenegou, Guillaume [ORDFR] (Thu Aug 11 2011 - 04:56:11 CDT)
- Change Path to Povray Moritz Mnsterberg (Thu Aug 11 2011 - 03:34:59 CDT)
- Molefacture - VMD agreement Marc Charendoff (Wed Aug 10 2011 - 23:10:27 CDT)
- Solvation in VMD using Non Standard Solvent System Babban Mia (Wed Aug 10 2011 - 07:35:32 CDT)
- Long atom types from CGenFF causing charge problems Anna Whitney (Tue Aug 09 2011 - 16:01:09 CDT)
- TCL and Plugins Mark Suhovecky (Tue Aug 09 2011 - 12:23:41 CDT)
- measure dihedral and improper angles matziast_at_med.uth.gr (Tue Aug 09 2011 - 11:02:57 CDT)
- Command line for thickness parameter Guenegou, Guillaume [ORDFR] (Tue Aug 09 2011 - 06:00:29 CDT)
- Solvate a Protein for Explicit Solvent MD Babban Mia (Tue Aug 09 2011 - 04:16:03 CDT)
- Command line for thickness parameter Guenegou, Guillaume [ORDFR] (Tue Aug 09 2011 - 03:46:46 CDT)
- How to cionize DNA? example needed! Bikan Tan (Mon Aug 08 2011 - 18:59:19 CDT)
- Vmd molecule rotation and translation Anna (Mon Aug 08 2011 - 18:41:49 CDT)
- script KIRTANA S (Mon Aug 08 2011 - 16:09:45 CDT)
- vmd Shesh Nath (Sat Aug 06 2011 - 02:04:59 CDT)
- xtc plugin writing ability Francesco Oteri (Fri Aug 05 2011 - 07:39:59 CDT)
- specden - IR spectral density calculator plugin Kukol, Andreas (Thu Aug 04 2011 - 03:25:17 CDT)
- problem to render .cms file AB (Thu Aug 04 2011 - 02:11:34 CDT)
- making movie Moeed (Wed Aug 03 2011 - 20:56:47 CDT)
- Re: making movie John Stone (Fri Aug 05 2011 - 16:13:28 CDT)
- Re: making movie Moeed (Tue Aug 23 2011 - 05:55:37 CDT)
- Re: making movie John Stone (Tue Aug 23 2011 - 08:59:36 CDT)
- Re: making movie Axel Kohlmeyer (Tue Aug 23 2011 - 09:28:57 CDT)
- Re: making movie Moeed (Tue Aug 23 2011 - 09:57:32 CDT)
- Re: making movie Axel Kohlmeyer (Tue Aug 23 2011 - 09:59:59 CDT)
- Re: making movie John Stone (Tue Aug 23 2011 - 10:36:05 CDT)
- Re: making movie Moeed (Tue Aug 23 2011 - 05:55:37 CDT)
- Re: making movie John Stone (Fri Aug 05 2011 - 16:13:28 CDT)
- .car or .xyz output winardi, erik (Wed Aug 03 2011 - 19:39:47 CDT)
- Fwd: hbond analysis subrata paul (Wed Aug 03 2011 - 07:41:05 CDT)
- viewing dcd files Vivek Ranjan (Tue Aug 02 2011 - 19:51:37 CDT)
- Problems running VMD-CUDA with GNU-Linux Francesco Pietra (Tue Aug 02 2011 - 16:52:01 CDT)
- selection of sugars with VMD Molybdos Kirkimpolakis (Tue Aug 02 2011 - 14:11:49 CDT)
- vmd 1.9 sur doesn't work AB (Tue Aug 02 2011 - 13:58:43 CDT)
- VMD User Survey coming to your email inbox soon.... John Stone (Tue Aug 02 2011 - 10:19:24 CDT)
- about psf file generation safron saif (Mon Aug 01 2011 - 07:22:08 CDT)
- moveby command hanif mahboobi (Sun Jul 31 2011 - 06:13:57 CDT)
- a file for commands of console JhonY. I. (Sat Jul 30 2011 - 08:55:14 CDT)
- different number of atoms in each frame of the trajectory file Debasis Sengupta (Fri Jul 29 2011 - 16:58:34 CDT)
- 'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, October 17-21, 2011, Bremen, Germany David Brandon (Fri Jul 29 2011 - 14:15:06 CDT)
- PDB manipulation nahren manuel (Fri Jul 29 2011 - 09:44:38 CDT)
- Nvidia quadro Fx1300 problem Federico Filomia (Fri Jul 29 2011 - 03:55:25 CDT)
- converting .dx volumetric data to 2D isocontour Raul Araya (Thu Jul 28 2011 - 12:31:37 CDT)
- creating chiral molecules Peyman Z.Moghadam (Thu Jul 28 2011 - 04:21:16 CDT)
- How to save image in SVG format? ع (Tue Jul 26 2011 - 00:48:28 CDT)
- loading saved state from command line Erik Nordgren (Mon Jul 25 2011 - 19:12:03 CDT)
- Question about eval Pavan Ghatty (Mon Jul 25 2011 - 13:51:53 CDT)
- Understand a script Sara baretller (Mon Jul 25 2011 - 08:35:51 CDT)
- Re: namd-l: how to generate transparent figures? BIN ZHANG (Sun Jul 24 2011 - 11:31:04 CDT)
- cyclic peptides Alisha \ (Fri Jul 22 2011 - 13:09:55 CDT)
- SOLVED: Failure to run namd-cuda with gtx-470 Francesco Pietra (Fri Jul 22 2011 - 09:56:34 CDT)
- ViewChangerRender (VCR) plug-in Nuno Sousa Cerqueira (Thu Jul 21 2011 - 11:53:32 CDT)
- Novint Falcon in VMD - help with setup Filip Persson (Wed Jul 20 2011 - 05:12:44 CDT)
- MDFF problem hamze rahimi (Tue Jul 19 2011 - 23:13:05 CDT)
- about docking with VMD Hui WEI (Tue Jul 19 2011 - 16:37:36 CDT)
- Mutating a residue to a nonstandard amino acid Alisha \ (Tue Jul 19 2011 - 16:14:56 CDT)
- AMBER coordinates with periodic box Guenegou, Guillaume [ORDFR] (Tue Jul 19 2011 - 08:18:44 CDT)
- shades of licorice representation maria goranovic (Tue Jul 19 2011 - 07:53:52 CDT)
- Re: shades of licorice representation Axel Kohlmeyer (Tue Jul 19 2011 - 08:44:13 CDT)
- Re: shades of licorice representation Boris Steipe (Tue Jul 19 2011 - 10:10:01 CDT)
- RE: shades of licorice representation Mark Cunningham (Tue Jul 19 2011 - 11:53:54 CDT)
- Re: shades of licorice representation Hurt, Darrell (NIH/NIAID) [E] (Tue Jul 19 2011 - 14:24:42 CDT)
- RE: shades of licorice representation Mark Cunningham (Tue Jul 19 2011 - 15:19:53 CDT)
- Re: shades of licorice representation Hurt, Darrell (NIH/NIAID) [E] (Tue Jul 19 2011 - 15:24:26 CDT)
- Re: shades of licorice representation maria goranovic (Wed Jul 20 2011 - 05:28:48 CDT)
- Re: shades of licorice representation Axel Kohlmeyer (Wed Jul 20 2011 - 08:57:58 CDT)
- Re: shades of licorice representation Hurt, Darrell (NIH/NIAID) [E] (Tue Jul 19 2011 - 14:24:42 CDT)
- RE.: Re: VMD and MDFF: ssrestraints package error message under Windows Nicolas Coudray (Mon Jul 18 2011 - 14:46:13 CDT)
- how to change working directory of VMD? Esam Tolba (Mon Jul 18 2011 - 14:02:17 CDT)
- script KIRTANA S (Mon Jul 18 2011 - 13:20:52 CDT)
- Hydration dynamics:Phrase selection problem in vmd Kartheek (Mon Jul 18 2011 - 07:09:02 CDT)
- zinc-finger protein simulation hamze rahimi (Mon Jul 18 2011 - 06:55:08 CDT)
- calculate atom distance between two chain hamze rahimi (Mon Jul 18 2011 - 06:31:04 CDT)
- Problem of installing VMD 1.8.3 on Fedora14 Tatyana Sysoeva (Sun Jul 17 2011 - 15:42:28 CDT)
- autoionize adds too many ions Edward Lyman (Fri Jul 15 2011 - 14:34:48 CDT)
- angle between two domains connected at a hinge maria goranovic (Fri Jul 15 2011 - 08:35:52 CDT)
- hi kanchi subbarao rao (Fri Jul 15 2011 - 04:43:19 CDT)
- Initial configurations / topology for LAMMPS molecular dynamics (Thu Jul 14 2011 - 15:22:41 CDT)
- Implicit Ligand Sampling Jacopo Sgrignani (Thu Jul 14 2011 - 14:50:21 CDT)
- Implicit Ligand Sampling Jacopo Sgrignani (Thu Jul 14 2011 - 11:05:37 CDT)
- How to change the VMD working Directory Esam Tolba (Thu Jul 14 2011 - 09:10:17 CDT)
- Add user output to DCD trajectories Nima Nouri (Thu Jul 14 2011 - 05:18:29 CDT)
- script KIRTANA S (Tue Jul 12 2011 - 11:12:41 CDT)
- Retrieving Cremer-Pople parameters Mr Bernard Ramos (Tue Jul 12 2011 - 07:40:05 CDT)
- stereo anaglyph rendering thiru pathi (Sun Jul 10 2011 - 01:47:59 CDT)
- PBCwrap tools Simulation Biology (Sat Jul 09 2011 - 17:48:29 CDT)
- Does this work with VMD: Nvidia 3DVision Glasses + SyncMaster 2233RZ + GTX 580 + Win7? Ajasja Ljubetič (Sat Jul 09 2011 - 17:06:19 CDT)
- import selection in array for script KIRTANA S (Fri Jul 08 2011 - 14:37:11 CDT)
- Quadro FX1800 , Stereo and VMD Vlad Cojocaru (Fri Jul 08 2011 - 09:25:33 CDT)
- Re: Quadro FX1800 , Stereo and VMD John Stone (Fri Jul 08 2011 - 10:41:12 CDT)
- RE: Quadro FX1800 , Stereo and VMD Jacob Story (Fri Jul 08 2011 - 11:23:30 CDT)
- Re: Quadro FX1800 , Stereo and VMD John Stone (Fri Jul 08 2011 - 11:38:42 CDT)
- Re: Quadro FX1800 , Stereo and VMD Vlad Cojocaru (Fri Jul 08 2011 - 11:49:09 CDT)
- Re: Quadro FX1800 , Stereo and VMD Vlad Cojocaru (Fri Jul 08 2011 - 12:00:23 CDT)
- Re: Quadro FX1800 , Stereo and VMD Vlad Cojocaru (Fri Jul 08 2011 - 12:00:49 CDT)
- how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Fri Jul 08 2011 - 07:59:10 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work Axel Kohlmeyer (Fri Jul 08 2011 - 08:31:17 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Fri Jul 08 2011 - 09:56:14 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work Axel Kohlmeyer (Fri Jul 08 2011 - 11:20:11 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Mon Jul 11 2011 - 04:12:11 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work John Stone (Tue Jul 12 2011 - 13:19:29 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Tue Jul 12 2011 - 14:19:51 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work Axel Kohlmeyer (Tue Jul 12 2011 - 15:17:50 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Wed Jul 13 2011 - 08:29:18 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Fri Jul 08 2011 - 09:56:14 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work Axel Kohlmeyer (Fri Jul 08 2011 - 08:31:17 CDT)
- Pucker parameters Payne, Christy (Thu Jul 07 2011 - 14:35:18 CDT)
- Salt brigde Christian Wohlschlager (Thu Jul 07 2011 - 01:06:51 CDT)
- script KIRTANA S (Wed Jul 06 2011 - 17:04:29 CDT)
- On Cremer-Pople ring puckering Mr Bernard Ramos (Wed Jul 06 2011 - 14:13:05 CDT)
- VMD and MDFF: ssrestraints package error message under Windows Nicolas Coudray (Wed Jul 06 2011 - 13:55:21 CDT)
- Problem with for loop. Sara baretller (Wed Jul 06 2011 - 09:38:20 CDT)
- Re: Problem with for loop. Sara baretller (Wed Jul 06 2011 - 10:04:01 CDT)
- Re: Re: Problem with for loop. Axel Kohlmeyer (Wed Jul 06 2011 - 10:57:44 CDT)
- RE: Re: Problem with for loop. Mark Cunningham (Wed Jul 06 2011 - 12:34:36 CDT)
- Re: Re: Problem with for loop. Sara baretller (Thu Jul 07 2011 - 08:08:42 CDT)
- RE: Re: Problem with for loop. Mark Cunningham (Thu Jul 07 2011 - 09:22:27 CDT)
- Re: Re: Problem with for loop. Sara baretller (Thu Jul 07 2011 - 16:13:03 CDT)
- Re: Re: Problem with for loop. Axel Kohlmeyer (Thu Jul 07 2011 - 16:59:46 CDT)
- Re: Re: Problem with for loop. Sara baretller (Fri Jul 08 2011 - 10:19:50 CDT)
- Re: Re: Problem with for loop. Sara baretller (Fri Jul 08 2011 - 15:09:16 CDT)
- Re: Problem with for loop. Axel Kohlmeyer (Wed Jul 06 2011 - 10:26:10 CDT)
- Re: Problem with for loop. Sara baretller (Wed Jul 06 2011 - 10:04:01 CDT)
- average radius of cavity over many frames from hole maria goranovic (Wed Jul 06 2011 - 02:28:49 CDT)
- Distance between atoms in frame snoze pa (Tue Jul 05 2011 - 18:12:31 CDT)
- qpt_conv command of Hole is interactive, how to automate it for multiple frames? maria goranovic (Tue Jul 05 2011 - 10:05:55 CDT)
- File as video safron saif (Tue Jul 05 2011 - 00:02:36 CDT)
- New Multi-platform Surface and volume Calculator Joo Ribeiro (Mon Jul 04 2011 - 16:06:53 CDT)
- Computer hangs on trying to launch VMD CUDA Francesco Pietra (Mon Jul 04 2011 - 02:19:02 CDT)
- contacts and pbc Jesper Srensen (Sun Jul 03 2011 - 08:39:02 CDT)
- Patchlet for MacOS 32/64-bit compilation FX (Sat Jul 02 2011 - 05:13:21 CDT)
- A patch for OFF import and a question about representation of surfaces FX (Sat Jul 02 2011 - 05:08:08 CDT)
- Problem with loop. it s not going to the next peptide Sara baretller (Fri Jul 01 2011 - 13:13:14 CDT)
- catdcd and velocity dcd file arash azari (Fri Jul 01 2011 - 10:06:11 CDT)
- VMD scripting: Perform PBCwrap+fitframes on several dcd files Filip Persson (Fri Jul 01 2011 - 08:03:26 CDT)
- VMD atom NUMER problem snoze pa (Wed Jun 29 2011 - 15:07:27 CDT)
- H-bond analysis Rupashree Shyama Ray (Wed Jun 29 2011 - 09:15:50 CDT)
- About psf file safron saif (Wed Jun 29 2011 - 04:02:57 CDT)
- Installation problem -Solvate mohan maruthi sena (Tue Jun 28 2011 - 23:06:58 CDT)
- Normalization of RDFs in gofr plugin gaborekt_at_duq.edu (Tue Jun 28 2011 - 12:34:37 CDT)
- Re: Normalization of RDFs in gofr plugin Axel Kohlmeyer (Tue Jun 28 2011 - 13:06:49 CDT)
- Re: Normalization of RDFs in gofr plugin gaborekt_at_duq.edu (Tue Jun 28 2011 - 16:05:59 CDT)
- Re: Normalization of RDFs in gofr plugin Axel Kohlmeyer (Tue Jun 28 2011 - 18:08:31 CDT)
- Display Multiple Bond Order Joseph Bylund (Wed Jun 29 2011 - 11:57:50 CDT)
- Re: Display Multiple Bond Order Axel Kohlmeyer (Wed Jun 29 2011 - 12:41:50 CDT)
- Re: Display Multiple Bond Order John Stone (Wed Jun 29 2011 - 15:24:24 CDT)
- Re: Normalization of RDFs in gofr plugin gaborekt_at_duq.edu (Tue Jun 28 2011 - 16:05:59 CDT)
- Re: Normalization of RDFs in gofr plugin Axel Kohlmeyer (Tue Jun 28 2011 - 13:06:49 CDT)
- Bond between two hydrogen atoms Debasis Sengupta (Tue Jun 28 2011 - 12:23:05 CDT)
- Changing representations on a per-atom per-timestep basis J. Nathan Scott (Tue Jun 28 2011 - 11:34:19 CDT)
- Total Dipole Moment Chathurika Abeyrathne (Tue Jun 28 2011 - 04:48:54 CDT)
- Re: Total Dipole Moment Axel Kohlmeyer (Tue Jun 28 2011 - 09:48:33 CDT)
- Re: Total Dipole Moment Chathurika Abeyrathne (Tue Jun 28 2011 - 19:56:41 CDT)
- Re: Total Dipole Moment Axel Kohlmeyer (Tue Jun 28 2011 - 20:02:59 CDT)
- Re: Total Dipole Moment Chathurika Abeyrathne (Tue Jun 28 2011 - 20:08:17 CDT)
- Re: Total Dipole Moment Axel Kohlmeyer (Tue Jun 28 2011 - 20:11:47 CDT)
- Re: Total Dipole Moment Chathurika Abeyrathne (Tue Jun 28 2011 - 20:17:04 CDT)
- Re: Total Dipole Moment Chathurika Abeyrathne (Tue Jun 28 2011 - 19:56:41 CDT)
- Re: Total Dipole Moment Axel Kohlmeyer (Tue Jun 28 2011 - 09:48:33 CDT)
- VMD-I: rsmd calculation nataliaperez_at_infomed.sld.cu (Mon Jun 27 2011 - 14:57:41 CDT)
- VMD-I: nataliaperez_at_infomed.sld.cu (Mon Jun 27 2011 - 11:21:02 CDT)
- best fit lines through two selections per each molecule ( I have 80 molecules) and the angle with another vector for each molecule Sara Biocomputation (Mon Jun 27 2011 - 10:39:30 CDT)
- color trajectory using specific values rather than color scale Brian Puchala (Mon Jun 27 2011 - 09:55:05 CDT)
- Re: color trajectory using specific values rather than color scale Axel Kohlmeyer (Mon Jun 27 2011 - 10:32:51 CDT)
- Re: color trajectory using specific values rather than color scale Jrme Hnin (Mon Jun 27 2011 - 11:20:41 CDT)
- Re: color trajectory using specific values rather than color scale Joshua A. Anderson (Mon Jun 27 2011 - 11:50:44 CDT)
- Molefacture: creating model helices Neelanjana Sengupta (Mon Jun 27 2011 - 06:31:03 CDT)
- protein-water RDF divya nayar (Mon Jun 27 2011 - 01:15:21 CDT)
- not to display atoms in certain region pouyan farzinpor (Fri Jun 24 2011 - 14:53:03 CDT)
- align axes Adrian Roitberg (Wed Jun 22 2011 - 14:17:50 CDT)
- VMD not working on MacOS X 10.6.7 Daniel Aiello (Thu Jun 23 2011 - 12:26:20 CDT)
- volume of hydration shells divya nayar (Thu Jun 23 2011 - 06:12:35 CDT)
- hydration shell volume divya nayar (Thu Jun 23 2011 - 01:43:55 CDT)
- finding water around protein divya nayar (Wed Jun 22 2011 - 23:55:35 CDT)
- can not compile VMD plugin hongphuc nguyen (Wed Jun 22 2011 - 22:15:55 CDT)
- Dividing the water in groups like WAT1; WAT2; WAT3 PAUL NEWMAN (Wed Jun 22 2011 - 20:41:32 CDT)
- APBS installation problem Sangita Kachhap (Wed Jun 22 2011 - 12:44:34 CDT)
- APBS installation problem Sangita Kachhap (Wed Jun 22 2011 - 11:23:19 CDT)
- Rotating a non-coordinate file Reza Salari (Wed Jun 22 2011 - 04:45:53 CDT)
- Reading PSF with extended atom types Gianluca Interlandi (Wed Jun 22 2011 - 00:05:18 CDT)
- problem in launching vmd kaustubh joshi (Tue Jun 21 2011 - 07:21:17 CDT)
- can not import Hessian/charge from single point calculation hongphuc nguyen (Tue Jun 21 2011 - 03:14:15 CDT)
- mutate amino acid hamze rahimi (Sun Jun 19 2011 - 02:25:05 CDT)
- how to get pqr format file with catdcd jnsong (Sat Jun 18 2011 - 01:25:15 CDT)
- Re: Fwd: "cuda error cudastreamcreate", Francesco Pietra (Fri Jun 17 2011 - 00:50:05 CDT)
- invisible files in windows Michael Zimmermann (Wed Jun 15 2011 - 16:57:39 CDT)
- rdf for specific group of atoms Rupashree Shyama Ray (Wed Jun 15 2011 - 08:29:29 CDT)
- water is forming bonds between hydrogens PAUL NEWMAN (Wed Jun 15 2011 - 00:25:46 CDT)
- water is forming bonds between oxigens PAUL NEWMAN (Wed Jun 15 2011 - 00:01:37 CDT)
- color sidechains differently Magnus Andersson (Tue Jun 14 2011 - 21:30:10 CDT)
- Invitation to connect on LinkedIn Iman Salehinia via LinkedIn (Tue Jun 14 2011 - 18:31:13 CDT)
- Vmd vs QUANTA Sajad Ahrari (Tue Jun 14 2011 - 01:46:38 CDT)
- Vmd vs QUANTA Sajad Ahrari (Mon Jun 13 2011 - 23:59:04 CDT)
- VolMap Tool Question Joe Janicki (Mon Jun 13 2011 - 13:36:18 CDT)
- showperiodic - not self? Jesper Srensen (Mon Jun 13 2011 - 12:14:44 CDT)
- cropping the missing residues from other PDB file Joyce Tan (Mon Jun 13 2011 - 09:37:14 CDT)
- Using VMD/NAMD to construct Cyclodextrins using Chamm topologies Sam Wallace (Sun Jun 12 2011 - 21:34:17 CDT)
- simulation in Nitrogen box sarah k (Sat Jun 11 2011 - 09:12:39 CDT)
- create surface of overlapping VdW volume Dow Hurst (Fri Jun 10 2011 - 18:17:50 CDT)
- Selecting multiple ranges Seibold, Stephen (Fri Jun 10 2011 - 09:28:48 CDT)
- Problem using rotate command in a script ...(2) Alberto Sergio Garay (Fri Jun 10 2011 - 07:10:05 CDT)
- Problem using rotate command in a script ...(2) Alberto Sergio Garay (Thu Jun 09 2011 - 13:11:01 CDT)
- Problem using rotate command in a script .... Alberto Sergio Garay (Thu Jun 09 2011 - 09:36:33 CDT)
- Adding missing residues Joyce Tan (Thu Jun 09 2011 - 01:50:05 CDT)
- Tracing distances among atoms in a MD simulation DCM CA (Wed Jun 08 2011 - 20:57:17 CDT)
- parameterization tool Bennion, Brian (Wed Jun 08 2011 - 16:14:31 CDT)
- xy diagonal Magnus Andersson (Wed Jun 08 2011 - 12:29:30 CDT)
- Problem using rotate in a script .... Alberto Sergio Garay (Wed Jun 08 2011 - 10:33:49 CDT)
- VMD on Intel core i3 + Ubuntu masci002_at_umn.edu (Tue Jun 07 2011 - 19:03:26 CDT)
- Problem with Starting vmd after Debian System Upgrade Angelo Rossi (Tue Jun 07 2011 - 11:26:06 CDT)
- VMD moviemaker KK Sahu (Tue Jun 07 2011 - 05:22:34 CDT)
- saving dcd with less frames Joyce Tan (Tue Jun 07 2011 - 04:39:35 CDT)
- VMD does not exit after running closest.tcl script in combination with bigdcd maria goranovic (Tue Jun 07 2011 - 04:01:34 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd Ajasja Ljubetič (Tue Jun 07 2011 - 09:02:10 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd Ajasja Ljubetič (Tue Jun 07 2011 - 09:07:08 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd maria goranovic (Wed Jun 08 2011 - 03:33:23 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd John Stone (Thu Jun 09 2011 - 16:02:54 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd maria goranovic (Fri Jun 10 2011 - 04:26:48 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd maria goranovic (Fri Jun 10 2011 - 04:36:02 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd John Stone (Fri Jun 10 2011 - 09:27:05 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd Ajasja Ljubetič (Tue Jun 07 2011 - 09:07:08 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd Ajasja Ljubetič (Tue Jun 07 2011 - 09:02:10 CDT)
- Dipole Moment Monitoring Sally Fisher (Mon Jun 06 2011 - 21:10:57 CDT)
- topotools {.top} for Gromacs {.tpr} generation Lalit (Mon Jun 06 2011 - 18:19:21 CDT)
- Superimposition problem Qmer_AN?= (Mon Jun 06 2011 - 12:30:04 CDT)
- Tachyon post-render commands under Win-XP Daniel Holloway (Mon Jun 06 2011 - 08:50:17 CDT)
- Fw: how do I show contacts with XXX angstroms between a protein and a ligand? sajad falsafi (Sun Jun 05 2011 - 08:06:56 CDT)
- how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Fri Jun 03 2011 - 22:27:58 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? sajad falsafi (Sat Jun 04 2011 - 08:26:14 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Sat Jun 04 2011 - 12:14:40 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Sat Jun 04 2011 - 12:27:05 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Sat Jun 04 2011 - 13:09:48 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Sat Jun 04 2011 - 21:24:26 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? John Stone (Mon Jun 06 2011 - 13:45:23 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? John Stone (Mon Jun 06 2011 - 13:42:29 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? sajad falsafi (Tue Jun 07 2011 - 04:55:18 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Sat Jun 04 2011 - 12:14:40 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Craig Knox (Mon Jun 06 2011 - 11:33:42 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? sajad falsafi (Sat Jun 04 2011 - 08:26:14 CDT)
- questions about RBCG (Fri Jun 03 2011 - 21:27:17 CDT)
- submit VMD_SS script sajad falsafi (Fri Jun 03 2011 - 11:35:20 CDT)
- Invitation to connect on LinkedIn Lucas Fernández Seivane via LinkedIn (Fri Jun 03 2011 - 02:30:33 CDT)
- submit VMD_SS script sajad falsafi (Fri Jun 03 2011 - 00:59:22 CDT)
- installation trouble Michael Zimmermann (Thu Jun 02 2011 - 23:00:40 CDT)
- For loops decelerate Benjamin Hall (Thu Jun 02 2011 - 03:39:02 CDT)
- charge information for the PMEpot plugin Raul Araya (Wed Jun 01 2011 - 11:48:07 CDT)
- .gro format to .pqr format Mona Habibi (Wed Jun 01 2011 - 10:17:20 CDT)
- Compiling plugins without netcdf Guido Polles (Wed Jun 01 2011 - 10:09:24 CDT)
- Re: [lammps-users] using topotools to view lammps output Axel Kohlmeyer (Wed Jun 01 2011 - 08:48:04 CDT)
- Invitation to connect on LinkedIn masoud Kazemi via LinkedIn (Wed Jun 01 2011 - 07:55:20 CDT)
- problem with bigdcd rmsd calculaton output Bian Li (Mon May 30 2011 - 22:22:48 CDT)
- Issue with NAMD/VMD tutorial Matthew Bick (Mon May 30 2011 - 12:32:29 CDT)
- Save Coordinates for Multiple Loads Qmer_AN?= (Sun May 29 2011 - 09:14:25 CDT)
- Protein cavities BRAULIO VALDEBENITO MATURANA (Sat May 28 2011 - 23:26:02 CDT)
- use variable in atomselect dhacademic (Fri May 27 2011 - 14:55:26 CDT)
- creating psf file seda demirci (Fri May 27 2011 - 10:13:05 CDT)
- Protein cavities BRAULIO FAVIN VALDEBENITO MATURANA (Thu May 26 2011 - 12:41:48 CDT)
- tips for an annoying aliasing task? Edward Lyman (Thu May 26 2011 - 10:33:27 CDT)
- measure fit - wrong alignment Eduardo Oliveira (Thu May 26 2011 - 05:56:40 CDT)
- surface of an atomic property Anna Amat (Wed May 25 2011 - 11:44:38 CDT)
- 3Dconnexion SpaceNavigator (OS X) Hans Martin Senn (Wed May 25 2011 - 11:37:51 CDT)
- surface from a generic atomic property Anna Amat (Wed May 25 2011 - 11:15:11 CDT)
- pbctools plugin & protein-bound ligand Irene Newhouse (Tue May 24 2011 - 14:36:12 CDT)
- trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Tue May 24 2011 - 08:39:08 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Ajasja Ljubetič (Tue May 24 2011 - 09:48:15 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Tue May 24 2011 - 11:19:26 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 John Stone (Tue May 24 2011 - 12:13:07 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Axel Kohlmeyer (Tue May 24 2011 - 14:08:26 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Wed May 25 2011 - 04:51:02 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Axel Kohlmeyer (Wed May 25 2011 - 05:35:42 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Ajasja Ljubetič (Wed May 25 2011 - 05:57:10 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Wed May 25 2011 - 06:05:44 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 John Stone (Wed May 25 2011 - 10:18:12 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Mon Jun 06 2011 - 07:36:35 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Axel Kohlmeyer (Tue May 24 2011 - 12:14:39 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Ajasja Ljubetič (Tue May 24 2011 - 12:22:00 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Tue May 24 2011 - 11:19:26 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Ajasja Ljubetič (Tue May 24 2011 - 09:48:15 CDT)
- size for render Kevin Knoops (Tue May 24 2011 - 06:01:15 CDT)
- vmd calculating wrong number of frames in xtc file using molinfo numframes ? maria goranovic (Mon May 23 2011 - 10:13:08 CDT)
- problem in overlapping atoms Parul tew (Sun May 22 2011 - 05:01:31 CDT)
- Non-cuda version of VMD on Linux? Ismail, Mohd F. (Sat May 21 2011 - 22:02:01 CDT)
- color atom by stress Shaorui Yang (Sat May 21 2011 - 15:23:48 CDT)
- move volume file Lane Votapka (Fri May 20 2011 - 17:11:49 CDT)
- Re: move volume file Lane Votapka (Wed May 25 2011 - 13:17:26 CDT)
- Mean value of el. potential ? Marek Maly (Wed May 25 2011 - 17:59:42 CDT)
- Re: Mean value of el. potential ? Axel Kohlmeyer (Wed May 25 2011 - 19:51:55 CDT)
- Re: Mean value of el. potential ? Marek Maly (Thu May 26 2011 - 04:29:12 CDT)
- RE: Mean value of el. potential ? Walter Rocchia (Thu May 26 2011 - 06:02:03 CDT)
- Re: Mean value of el. potential ? Marek Maly (Thu May 26 2011 - 06:51:44 CDT)
- Mean value of el. potential ? Marek Maly (Wed May 25 2011 - 17:59:42 CDT)
- Re: move volume file Lane Votapka (Wed May 25 2011 - 13:17:26 CDT)
- antechamber for Windows Keith Battle (Fri May 20 2011 - 12:48:21 CDT)
- Displaying protein AND ligand from an amber trajectory George Tzotzos (Fri May 20 2011 - 08:31:17 CDT)
- pbc unwrap not complete Nicola Giacche' (Fri May 20 2011 - 08:05:40 CDT)
- Problems with APBS calculations Ramon Garduno-Juarez (Thu May 19 2011 - 20:51:53 CDT)
- Aligning two proteins of varying atom numbers ban arn (Thu May 19 2011 - 10:43:10 CDT)
- Re: Aligning two proteins of varying atom numbers Axel Kohlmeyer (Thu May 19 2011 - 11:17:37 CDT)
- Re: Aligning two proteins of varying atom numbers Joseph Bylund (Thu May 19 2011 - 11:31:52 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Thu May 19 2011 - 11:37:40 CDT)
- Re: Aligning two proteins of varying atom numbers Eduard Schreiner (Thu May 19 2011 - 12:07:00 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Fri May 20 2011 - 04:23:12 CDT)
- Re: Aligning two proteins of varying atom numbers Axel Kohlmeyer (Fri May 20 2011 - 05:47:18 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Fri May 20 2011 - 06:37:47 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Fri May 20 2011 - 09:04:53 CDT)
- Re: Aligning two proteins of varying atom numbers Gianluca Interlandi (Fri May 20 2011 - 11:26:25 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Sun May 22 2011 - 16:25:11 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Thu May 19 2011 - 11:37:40 CDT)
- indentified particular water molecule Sangita Kachhap (Thu May 19 2011 - 07:24:03 CDT)
- aligning multiple trajectories to a single .pdb file andrew ritchie (Wed May 18 2011 - 13:30:54 CDT)
- problem merging two identical proteins juan jesus sanchez sanchez (Wed May 18 2011 - 12:32:09 CDT)
- reading .vel files and .veldcd files Mao Mao (Wed May 18 2011 - 10:50:46 CDT)
- run and close vmd with bash script? Jorgen Simonsen (Wed May 18 2011 - 07:04:26 CDT)
- hi to all kanchi subbarao rao (Tue May 17 2011 - 11:34:04 CDT)
- Tkcon on at startup Qmer_AN?= (Tue May 17 2011 - 11:00:19 CDT)
- Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD? jnsong (Tue May 17 2011 - 08:54:54 CDT)
- Re: Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD? Axel Kohlmeyer (Tue May 17 2011 - 09:44:26 CDT)
- Re: Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD? John Stone (Tue May 17 2011 - 10:09:55 CDT)
- convert prmtop to psf Jorgen Simonsen (Tue May 17 2011 - 04:17:33 CDT)
- Re: error in movie generator Esam Tolba (Tue May 17 2011 - 03:57:06 CDT)
- velocity profile Mao Mao (Mon May 16 2011 - 10:45:55 CDT)
- error in movie generator Esam Tolba (Mon May 16 2011 - 10:01:27 CDT)
- sharing atoms beyza bilgic (Mon May 16 2011 - 08:52:33 CDT)
- Secondary Structure Disappears after Molecule Move Qmer_AN?= (Mon May 16 2011 - 05:45:21 CDT)
- pbc wrap cnu gromacs (Fri May 13 2011 - 13:50:30 CDT)
- PhD position in Computational Structural Biology at MPI Muenster Vlad Cojocaru (Fri May 13 2011 - 04:49:14 CDT)
- AW: PhD position in Computational Structural Biology at MPI Muenster Prskalo, Alen-Pilip (Fri May 13 2011 - 06:26:56 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Ajasja Ljubetič (Fri May 13 2011 - 07:04:26 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Wendy Gonzlez (Fri May 13 2011 - 07:54:29 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Bjoern Olausson (Fri May 13 2011 - 13:23:05 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Olaf Lenz (Sun May 15 2011 - 10:34:40 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Axel Kohlmeyer (Sun May 15 2011 - 11:51:22 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Vlad Cojocaru (Sun May 15 2011 - 13:47:01 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Gianluca Interlandi (Sun May 15 2011 - 14:42:22 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Axel Kohlmeyer (Sun May 15 2011 - 16:47:40 CDT)
- AW: PhD position in Computational Structural Biology at MPI Muenster Prskalo, Alen-Pilip (Fri May 13 2011 - 06:26:56 CDT)
- Compiling plugins without netcdf support returns an error. Cosseddu, Salvatore (Thu May 12 2011 - 13:28:48 CDT)
- Compiling plugins without netcdf support returns an error. Cosseddu, Salvatore (Thu May 12 2011 - 15:12:32 CDT)
- Re: Compiling plugins without netcdf support returns an error. Axel Kohlmeyer (Thu May 12 2011 - 15:56:52 CDT)
- RE: Compiling plugins without netcdf support returns an error. Cosseddu, Salvatore (Thu May 12 2011 - 18:48:11 CDT)
- Re: Compiling plugins without netcdf support returns an error. Axel Kohlmeyer (Thu May 12 2011 - 19:40:17 CDT)
- RE: Compiling plugins without netcdf support returns an error. Cosseddu, Salvatore (Fri May 13 2011 - 06:41:40 CDT)
- Re: Compiling plugins without netcdf support returns an error. John Stone (Thu May 12 2011 - 15:58:12 CDT)
- Re: Compiling plugins without netcdf support returns an error. Axel Kohlmeyer (Thu May 12 2011 - 15:56:52 CDT)
- Compiling plugins without netcdf support returns an error. Cosseddu, Salvatore (Thu May 12 2011 - 15:12:32 CDT)
- Large positive non-integer charge Grant Schauer (Thu May 12 2011 - 13:16:46 CDT)
- Re: Large positive non-integer charge Axel Kohlmeyer (Thu May 12 2011 - 13:56:44 CDT)
- Re: Large positive non-integer charge John Stone (Thu May 12 2011 - 14:00:30 CDT)
- Re: Large positive non-integer charge Grant Schauer (Thu May 12 2011 - 14:16:14 CDT)
- RE: Large positive non-integer charge David A. Horita (Thu May 12 2011 - 16:51:39 CDT)
- Re: Large positive non-integer charge Grant Schauer (Thu May 12 2011 - 18:03:12 CDT)
- Re: Large positive non-integer charge John Stone (Tue May 17 2011 - 11:03:29 CDT)
- Re: Large positive non-integer charge John Stone (Thu May 12 2011 - 16:06:32 CDT)
- Re: Large positive non-integer charge John Stone (Thu May 12 2011 - 14:00:30 CDT)
- Re: Large positive non-integer charge Axel Kohlmeyer (Thu May 12 2011 - 13:56:44 CDT)
- Atom ID/Color change with timesteps Adkins, Laura R (Wed May 11 2011 - 19:17:05 CDT)
- May 18th, Late abstract submission deadline for 3Dsig Structural Bioinformatics & Computational Biophysics 3D SIG (Wed May 11 2011 - 16:57:22 CDT)
- command for volume slice? Jennifer Williams (Wed May 11 2011 - 08:16:25 CDT)
- changing the color of Sn atom beyza bilgic (Wed May 11 2011 - 06:12:50 CDT)
- changing the color of Sn atom Beyza Bilgi (Wed May 11 2011 - 05:24:31 CDT)
- to change color of Sn atom Beyza Bilgi (Wed May 11 2011 - 04:33:51 CDT)
- to change color of Sn atom Beyza Bilgi (Wed May 11 2011 - 04:28:07 CDT)
- save coordinate POSCAR Haijun (Tue May 10 2011 - 12:56:09 CDT)
- apbs with vmd, no output Asmaa Elsheshiny (Tue May 10 2011 - 12:14:08 CDT)
- bad window parameter -- SOLVED Robert Wohlhueter (Tue May 10 2011 - 10:16:48 CDT)
- Calculating RMSD on two sets of points Carolyn Phillips (Tue May 10 2011 - 09:57:25 CDT)
- bad window parameter Robert Wohlhueter (Tue May 10 2011 - 09:27:34 CDT)
- trajectory of water within 5 A of protein maria goranovic (Tue May 10 2011 - 02:27:58 CDT)
- SASA calculation Aditya Padhi (Mon May 09 2011 - 05:26:36 CDT)
- plotting spin density Olesya Haze (Thu May 05 2011 - 18:17:50 CDT)
- CAVE and Flystick control David Joiner (Wed May 04 2011 - 14:52:34 CDT)
- Fwd: molefacture "force tetrahedral" failure: SOLVED with chimera-vmd Francesco Pietra (Wed May 04 2011 - 02:45:21 CDT)
- molefacture "force tetrahedral" failure Francesco Pietra (Wed May 04 2011 - 01:33:01 CDT)
- Visualization of coarse grained molecule with coarse_grain.tcl Paolo Conflitti (Tue May 03 2011 - 10:10:41 CDT)
- RE: SASA calculation using periodic images? Jesper Srensen (Tue May 03 2011 - 08:38:29 CDT)
- SASA calculation using periodic images? Jesper Sørensen (Tue May 03 2011 - 06:14:31 CDT)
- Cartoons and secondary structure prediction Francisco Jos Taberner Sanchis (Tue May 03 2011 - 05:51:24 CDT)
- Problem with cartoon and secondary structure Francisco Jos Taberner Sanchis (Tue May 03 2011 - 05:13:18 CDT)
- Fwd: Problem with cartoon and secondary structure Francisco Jos Taberner Sanchis (Tue May 03 2011 - 03:26:18 CDT)
- Generate psf file for cyclic peptide Tu.Le_at_csiro.au (Mon May 02 2011 - 22:33:01 CDT)
- desmond trajectory plugin Davide Provasi (Mon May 02 2011 - 10:40:30 CDT)
- VMD Movie Generator problem with "Image smoothing" set Bjoern Olausson (Mon May 02 2011 - 06:26:54 CDT)
- VMD- Ra Measurement Saurav Goel (Sun May 01 2011 - 19:43:28 CDT)
- Reconstruction of XST data from DCD data B.M.B. Vanschouwen (Sun May 01 2011 - 19:29:03 CDT)
- X & Y co-ordinate data ban arn (Sun May 01 2011 - 11:27:39 CDT)
- question regarding H-bond calculation juzer stationwala (Sun May 01 2011 - 10:31:55 CDT)
- Save molecule in pdb format Moutusi Manna (Sat Apr 30 2011 - 01:43:55 CDT)
- Questions about trajectory files obtained from LAMMPS Molecular dynamics with Reax Force field DreamCatcher (Fri Apr 29 2011 - 07:48:18 CDT)
- hello kanchi subbarao rao (Fri Apr 29 2011 - 05:58:05 CDT)
- request to know about bonds in between carbon atoms in carbon nanotubes safron saif (Fri Apr 29 2011 - 03:54:53 CDT)
- coloring by gradient Rodolfo Pereyra (Thu Apr 28 2011 - 15:36:51 CDT)
- HOW TO PARAMETRIZE A LIGAND shome sankar bhunia (Thu Apr 28 2011 - 04:53:12 CDT)
- hello kanchi subbarao rao (Thu Apr 28 2011 - 01:38:36 CDT)
- running plugin from the command line Sara Nichols (Wed Apr 27 2011 - 14:49:33 CDT)
- making a movie Moeed (Tue Apr 26 2011 - 17:58:06 CDT)
- RE: RE: New NAMD version 2011-03-03 uses Ada Zhan (Fri Apr 22 2011 - 16:04:52 CDT)
- RE: New NAMD version 2011-03-03 uses Ada Zhan (Fri Apr 22 2011 - 13:35:30 CDT)
- psfgen: error processing bonds Edward Lyman (Fri Apr 22 2011 - 10:03:30 CDT)
- Re: psfgen: error processing bonds John Stone (Tue Apr 26 2011 - 10:53:05 CDT)
- Re: psfgen: error processing bonds Jim Phillips (Tue Apr 26 2011 - 11:43:56 CDT)
- Re: psfgen: error processing bonds Jim Phillips (Tue Apr 26 2011 - 14:21:01 CDT)
- Re: psfgen: error processing bonds Edward Lyman (Fri Apr 29 2011 - 08:00:52 CDT)
- Re: psfgen: error processing bonds Jim Phillips (Fri Apr 29 2011 - 08:12:56 CDT)
- Re: psfgen: error processing bonds Axel Kohlmeyer (Fri Apr 29 2011 - 08:40:55 CDT)
- Re: psfgen: error processing bonds Edward Lyman (Fri Apr 29 2011 - 14:30:53 CDT)
- Re: psfgen: error processing bonds Axel Kohlmeyer (Fri Apr 29 2011 - 15:11:54 CDT)
- Re: psfgen: error processing bonds Edward Lyman (Sat Apr 30 2011 - 10:16:16 CDT)
- Re: psfgen: error processing bonds Edward Lyman (Sat Apr 30 2011 - 10:39:47 CDT)
- Re: psfgen: error processing bonds Axel Kohlmeyer (Sat Apr 30 2011 - 10:45:17 CDT)
- Re: psfgen: error processing bonds Edward Lyman (Sun May 01 2011 - 16:14:33 CDT)
- Re: psfgen: error processing bonds Axel Kohlmeyer (Sun May 01 2011 - 16:20:45 CDT)
- Re: psfgen: error processing bonds John Stone (Tue Apr 26 2011 - 10:53:05 CDT)
- fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 04:10:07 CDT)
- Re: fit dcd is not converging John Stone (Thu Apr 21 2011 - 10:22:10 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 10:48:33 CDT)
- Re: fit dcd is not converging John Stone (Thu Apr 21 2011 - 11:17:02 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 11:49:02 CDT)
- Re: fit dcd is not converging John Stone (Thu Apr 21 2011 - 12:15:30 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 13:54:04 CDT)
- Re: fit dcd is not converging John Stone (Thu Apr 21 2011 - 15:02:48 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 22:53:01 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Fri Apr 22 2011 - 03:52:48 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 10:37:31 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 10:48:33 CDT)
- Re: fit dcd is not converging John Stone (Thu Apr 21 2011 - 10:22:10 CDT)
- Installation/Upgrade Error Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 15:57:49 CDT)
- RE: Generating Topo Bond Data from LAMMPS Data File Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 15:30:52 CDT)
- Generating Topo Bond Data from LAMMPS Data File Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 10:23:29 CDT)
- generating .xsc files using periodic information Neelanjana Sengupta (Wed Apr 20 2011 - 07:06:04 CDT)
- Re: generating .xsc files using periodic information John Stone (Tue Apr 26 2011 - 11:02:48 CDT)
- Re: generating .xsc files using periodic information Axel Kohlmeyer (Tue Apr 26 2011 - 11:31:28 CDT)
- Re: generating .xsc files using periodic information Jim Phillips (Tue Apr 26 2011 - 11:35:43 CDT)
- Re: generating .xsc files using periodic information Neelanjana Sengupta (Tue Apr 26 2011 - 23:07:07 CDT)
- Re: generating .xsc files using periodic information Jim Phillips (Tue Apr 26 2011 - 23:16:46 CDT)
- Re: generating .xsc files using periodic information Axel Kohlmeyer (Tue Apr 26 2011 - 11:31:28 CDT)
- Re: generating .xsc files using periodic information John Stone (Tue Apr 26 2011 - 11:02:48 CDT)
- Simple Question regarding psf generation Christian Wohlschlager (Tue Apr 19 2011 - 08:09:15 CDT)
- waters selection agustina_at_cabm.rutgers.edu (Mon Apr 18 2011 - 15:49:09 CDT)
- mdf molfile plugin reader atom_type bug Craig Knox (Mon Apr 18 2011 - 13:03:51 CDT)
- compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 00:14:59 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 03:26:32 CDT)
- Re: compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 06:50:47 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 08:16:45 CDT)
- Re: compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 08:27:05 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 08:34:54 CDT)
- Re: compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 08:45:41 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 08:51:28 CDT)
- Re: compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 09:20:16 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 11:16:56 CDT)
- Re: compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 06:50:47 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 03:26:32 CDT)
- Re: Res: webpdb load problem John Stone (Fri Apr 15 2011 - 15:51:38 CDT)
- 3Dsig 2011: Structural Bioinformatics & Computational Biophysics, Vienna, 15-16 July 2011 (abstract deadline May 1st) 3D SIG (Fri Apr 15 2011 - 14:38:03 CDT)
- Replica Exchange alamng_at_uci.edu (Fri Apr 15 2011 - 02:35:05 CDT)
- Question about SASA Sebastian Maximilian Wilhelm (Thu Apr 14 2011 - 10:31:34 CDT)
- Re: using vmd to view gromacs trajectory bharat gupta (Thu Apr 14 2011 - 10:20:29 CDT)
- Recent Geforce Cuda GPU cards(GT 440, GTX 560ti) Burgess, Don E (Wed Apr 13 2011 - 11:26:02 CDT)
- X3DOM sphere resolution Joshua A. Anderson (Wed Apr 13 2011 - 07:09:37 CDT)
- webpdb load problem tiago sobreira (Tue Apr 12 2011 - 13:48:29 CDT)
- moving rotational center to display center Joseph Bylund (Tue Apr 12 2011 - 12:01:27 CDT)
- NMWiz - a new VMD plugin Ahmet Bakan (Tue Apr 12 2011 - 11:51:36 CDT)
- Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 06:14:36 CDT)
- Re: Tcl plugin development and debugging John Stone (Tue Apr 12 2011 - 09:04:37 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 09:33:01 CDT)
- Re: Tcl plugin development and debugging Axel Kohlmeyer (Tue Apr 12 2011 - 10:38:19 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 10:49:32 CDT)
- Re: Tcl plugin development and debugging Axel Kohlmeyer (Tue Apr 12 2011 - 10:56:17 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 11:21:56 CDT)
- Re: Tcl plugin development and debugging Axel Kohlmeyer (Tue Apr 12 2011 - 11:38:34 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 11:55:16 CDT)
- Re: Tcl plugin development and debugging Axel Kohlmeyer (Tue Apr 12 2011 - 12:05:24 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 12:11:47 CDT)
- Re: Tcl plugin development and debugging Ahmet Bakan (Tue Apr 12 2011 - 11:38:57 CDT)
- RE: Tcl plugin development and debugging Goldsmith, Jacob (Tue Apr 12 2011 - 11:57:28 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 09:33:01 CDT)
- Re: Tcl plugin development and debugging John Stone (Tue Apr 12 2011 - 09:04:37 CDT)
- trajectory generation using gaussian cube files Vamsee Voora (Mon Apr 11 2011 - 15:53:33 CDT)
- box vectores in .trr leila karami (Sat Apr 09 2011 - 08:44:04 CDT)
- measuring the orientation of a small a-helix Raul Araya (Wed Apr 06 2011 - 16:23:29 CDT)
- electrostatic potential maps. Raul Araya (Wed Apr 06 2011 - 13:13:58 CDT)
- 2D Contour plot ban arn (Wed Apr 06 2011 - 05:06:09 CDT)
- vectors box in .trr file leila karami (Wed Apr 06 2011 - 02:49:24 CDT)
- Transparent image render problem after vmd 1.9 version Bongkeun Kim (Wed Apr 06 2011 - 01:22:21 CDT)
- recenter Mark M Huntress (Sun Apr 03 2011 - 16:34:17 CDT)
- Fwd: (my) problems using molefacture dihedral Francesco Pietra (Sun Apr 03 2011 - 09:14:44 CDT)
- problem on rmsdtt masoud kazemi (Sun Apr 03 2011 - 08:52:22 CDT)
- Fwd: (my) problems using molefacture dihedral Francesco Pietra (Sun Apr 03 2011 - 08:49:53 CDT)
- (my) problems using molefacture dihedral Francesco Pietra (Sat Apr 02 2011 - 15:36:21 CDT)
- Water Models Chathurika Abeyrathne (Sat Apr 02 2011 - 02:43:29 CDT)
- How to create bonds in VMD? Saketh Bharadwaja (Fri Apr 01 2011 - 11:07:21 CDT)
- 访问我的图片 楚霸天下 (Fri Apr 01 2011 - 02:14:16 CDT)
- script problem Mark M Huntress (Thu Mar 31 2011 - 15:32:33 CDT)
- Rotating and saving coordinates of a copy of molecule alongwith original molecule Sujata Sovani (Thu Mar 31 2011 - 13:18:54 CDT)
- Reverse Mapping of RBCG Model Sibel Cakan (Wed Mar 30 2011 - 07:39:51 CDT)
- viewing trajectory Moeed (Tue Mar 29 2011 - 18:44:43 CDT)
- how to mark regions in Multiseq Irene Newhouse (Mon Mar 28 2011 - 19:35:31 CDT)
- Generate a PSF file for small, simple molecules THANH NGUYEN (Mon Mar 28 2011 - 19:11:42 CDT)
- phi-psi plot Ramya Narasimhan (Mon Mar 28 2011 - 05:29:01 CDT)
- Selecting atoms based on 'type' with LAMMPS + PSF Taco de Wolff (Mon Mar 28 2011 - 05:02:10 CDT)
- size of box Moeed (Mon Mar 28 2011 - 01:10:54 CDT)
- Invitation to connect on LinkedIn Ma Ming via LinkedIn (Sun Mar 27 2011 - 23:26:07 CDT)
- Ma Ming wants to stay in touch on LinkedIn Ma Ming via LinkedIn (Sun Mar 27 2011 - 23:21:55 CDT)
- Invitation to connect on LinkedIn ram prasad via LinkedIn (Sun Mar 27 2011 - 12:38:16 CDT)
- How to add iond for RBCG model maming10002000 (Sun Mar 27 2011 - 10:23:27 CDT)
- How to add ions for RBCG maming10002000 (Sun Mar 27 2011 - 09:56:02 CDT)
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- Re: measure dipole Axel Kohlmeyer (Thu Mar 24 2011 - 13:53:10 CDT)
- Re: measure dipole Paweł Kędzierski (Fri Mar 25 2011 - 02:55:54 CDT)
- RE: measure dipole Donovan B.T. (Fri Mar 25 2011 - 08:18:38 CDT)
- Re: measure dipole John Stone (Fri Mar 25 2011 - 09:11:24 CDT)
- RE: measure dipole Donovan B.T. (Mon Mar 28 2011 - 08:26:36 CDT)
- Re: measure dipole John Stone (Mon Mar 28 2011 - 15:52:54 CDT)
- Re: measure dipole Jernej Zidar (Tue Mar 29 2011 - 02:16:54 CDT)
- RE: measure dipole Donovan B.T. (Wed Mar 30 2011 - 08:16:53 CDT)
- Re: measure dipole Ajasja Ljubetič (Wed Mar 30 2011 - 09:16:21 CDT)
- Re: measure dipole Axel Kohlmeyer (Fri Mar 25 2011 - 09:14:47 CDT)
- RE: measure dipole Donovan B.T. (Fri Mar 25 2011 - 08:18:38 CDT)
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- Re: Error starting second VMD John Stone (Thu Mar 24 2011 - 21:02:06 CDT)
- Re: Error starting second VMD Jrme Hnin (Fri Mar 25 2011 - 04:40:04 CDT)
- Re: Error starting second VMD John Stone (Fri Mar 25 2011 - 09:05:39 CDT)
- Re: Error starting second VMD Jrme Hnin (Fri Mar 25 2011 - 09:19:59 CDT)
- Re: Error starting second VMD John Stone (Mon Mar 28 2011 - 16:04:34 CDT)
- Re: Error starting second VMD Jrme Hnin (Mon Mar 28 2011 - 17:33:59 CDT)
- Re: Error starting second VMD John Stone (Tue Apr 19 2011 - 22:26:56 CDT)
- Re: Error starting second VMD Jrme Hnin (Fri Mar 25 2011 - 04:40:04 CDT)
- Re: Error starting second VMD John Stone (Thu Mar 24 2011 - 21:02:06 CDT)
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- Fwd: charmmgen to autopsf Francesco Pietra (Mon Mar 21 2011 - 07:20:00 CDT)
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- script for projection of c-alpha atom cordinates on xy plane ban arn (Fri Mar 18 2011 - 12:58:19 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane Joseph Bylund (Fri Mar 18 2011 - 13:39:37 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane Paweł Kędzierski (Fri Mar 18 2011 - 15:17:31 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane ban arn (Mon Mar 21 2011 - 10:37:03 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane J. Rui Rodrigues (Mon Mar 21 2011 - 12:12:28 CDT)
- RE: script for projection of c-alpha atom cordinates on xy plane Mark Cunningham (Mon Mar 21 2011 - 13:56:12 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane Paweł Kędzierski (Tue Mar 22 2011 - 04:11:53 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane ban arn (Tue Mar 22 2011 - 05:00:42 CDT)
- RE: script for projection of c-alpha atom cordinates on xy plane Mark Cunningham (Tue Mar 22 2011 - 07:56:34 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane ban arn (Mon Mar 21 2011 - 10:37:03 CDT)
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- Re: .pdbqt file type Francesco Pietra (Thu Mar 17 2011 - 02:38:19 CDT)
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- Question about vdW-area Sebastian Maximilian Wilhelm (Wed Mar 16 2011 - 12:40:43 CDT)
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- Problem with using bigdcd.tcl jnsong (Tue Mar 15 2011 - 21:42:10 CDT)
- vmd for mac: range in isosurface representation Passerone, Daniele (Tue Mar 15 2011 - 04:34:48 CDT)
- Announce VMD 1.9 released John Stone (Mon Mar 14 2011 - 16:49:37 CDT)
- Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Mon Mar 14 2011 - 11:52:49 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Axel Kohlmeyer (Mon Mar 14 2011 - 13:43:28 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Mon Mar 14 2011 - 16:04:51 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins John Stone (Mon Mar 14 2011 - 16:22:58 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Mon Mar 14 2011 - 16:49:11 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Axel Kohlmeyer (Mon Mar 14 2011 - 18:08:53 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Fri Mar 18 2011 - 08:55:33 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins John Stone (Fri Mar 18 2011 - 10:13:20 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Axel Kohlmeyer (Fri Mar 18 2011 - 11:14:31 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Fri Mar 18 2011 - 11:21:56 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins John Stone (Fri Mar 18 2011 - 11:25:20 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Mon Mar 14 2011 - 16:04:51 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Axel Kohlmeyer (Mon Mar 14 2011 - 13:43:28 CDT)
- zero box vector leila karami (Sun Mar 13 2011 - 10:14:49 CDT)
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- count CLA number from different frames emiliawu_at_dicp.ac.cn (Sat Mar 12 2011 - 07:16:32 CST)
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- problem on making a movie Jun Cheng (Fri Mar 11 2011 - 04:42:34 CST)
- Re: problem on making a movie Axel Kohlmeyer (Fri Mar 11 2011 - 05:58:33 CST)
- RE: problem on making a movie Goldsmith, Jacob (Fri Mar 11 2011 - 09:20:58 CST)
- Re: problem on making a movie Jun Cheng (Fri Mar 11 2011 - 09:36:49 CST)
- Re: problem on making a movie John Stone (Fri Mar 11 2011 - 10:31:21 CST)
- Re: problem on making a movie Jun Cheng (Fri Mar 11 2011 - 12:26:13 CST)
- Re: problem on making a movie John Stone (Fri Mar 11 2011 - 12:37:14 CST)
- Re: problem on making a movie Jun Cheng (Tue Mar 15 2011 - 08:42:09 CDT)
- Re: problem on making a movie John Stone (Tue Mar 15 2011 - 14:14:04 CDT)
- Re: problem on making a movie Jun Cheng (Wed Mar 16 2011 - 18:16:44 CDT)
- RE: problem on making a movie Goldsmith, Jacob (Fri Mar 11 2011 - 09:20:58 CST)
- Re: problem on making a movie Axel Kohlmeyer (Fri Mar 11 2011 - 05:58:33 CST)
- Not calculate bonds by default. Eric Germaneau (Fri Mar 11 2011 - 07:12:04 CST)
- zero box vector leila karami (Thu Mar 10 2011 - 11:27:59 CST)
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- zero box vector leila karami (Thu Mar 10 2011 - 08:04:14 CST)
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- tcl script menica dibenedetto (Wed Mar 09 2011 - 08:32:25 CST)
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- Fwd: Re: namd-l: hBond colvars and patching Francesco Pietra (Tue Mar 08 2011 - 00:34:36 CST)
- VMD 1.9 beta 3 posted for download... John Stone (Mon Mar 07 2011 - 14:53:43 CST)
- Re: VMD 1.9 beta 3 posted for download... Cesar Millan (Mon Mar 07 2011 - 15:47:47 CST)
- Re: (Minnesota Supercomputing Institute Install) VMD 1.9 beta 3 posted for download... nlabello (Tue Mar 08 2011 - 16:00:25 CST)
- request help about hbond hamid mosaddeghi (Mon Mar 07 2011 - 13:20:13 CST)
- Fwd: ACS awards information John Stone (Mon Mar 07 2011 - 10:45:17 CST)
- request help about hbond hamid mosaddeghi (Mon Mar 07 2011 - 09:06:20 CST)
- Re: namd-l: hBond colvars and patching Francesco Pietra (Mon Mar 07 2011 - 00:12:54 CST)
- hBond colvars and patching Francesco Pietra (Sun Mar 06 2011 - 14:05:47 CST)
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- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 10:24:32 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Tue Mar 01 2011 - 10:34:35 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 10:38:20 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Tue Mar 01 2011 - 10:53:49 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 10:54:55 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Axel Kohlmeyer (Tue Mar 01 2011 - 11:23:36 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 11:28:30 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Tue Mar 01 2011 - 11:50:03 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Axel Kohlmeyer (Tue Mar 01 2011 - 12:33:03 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 12:32:51 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Wed Mar 02 2011 - 09:40:13 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Wed Mar 02 2011 - 10:07:35 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Wed Mar 02 2011 - 10:14:31 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Wed Mar 02 2011 - 12:46:57 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Thu Mar 03 2011 - 13:28:03 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Tue Mar 01 2011 - 10:34:35 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 10:24:32 CST)
- VMD 1.9 beta 2 posted for download... John Stone (Mon Feb 28 2011 - 21:44:36 CST)
- TCL Related Question Phelan Jr., Frederick R. Dr. (Mon Feb 28 2011 - 21:34:31 CST)
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- pot.dx file question Robin Varghese (Sat Feb 26 2011 - 15:42:04 CST)
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- vmd1.9beta1 Bennion, Brian (Wed Feb 23 2011 - 14:21:51 CST)
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- Re: vmd1.9beta1 Peter Freddolino (Wed Feb 23 2011 - 19:30:06 CST)
- RE: vmd1.9beta1 namdEnergyPlugin Bennion, Brian (Thu Feb 24 2011 - 12:42:02 CST)
- Re: vmd1.9beta1 namdEnergyPlugin Peter Freddolino (Thu Feb 24 2011 - 21:03:43 CST)
- RE: vmd1.9beta1 namdEnergyPlugin Bennion, Brian (Fri Feb 25 2011 - 10:45:04 CST)
- Re: vmd1.9beta1 namdEnergyPlugin Peter Freddolino (Fri Feb 25 2011 - 20:09:45 CST)
- RE: vmd1.9beta1 namdEnergyPlugin Bennion, Brian (Mon Feb 28 2011 - 16:06:28 CST)
- Re: vmd1.9beta1 namdEnergyPlugin Peter Freddolino (Mon Feb 28 2011 - 19:07:10 CST)
- RE: vmd1.9beta1 namdEnergyPlugin Bennion, Brian (Thu Feb 24 2011 - 12:42:02 CST)
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- Re: autopsf-patches C++ error 'expected integer but got "" ""' John Stone (Wed Feb 23 2011 - 10:34:09 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' Francesco Pietra (Wed Feb 23 2011 - 10:42:55 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' John Stone (Wed Feb 23 2011 - 10:47:31 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' Francesco Pietra (Wed Feb 23 2011 - 15:03:16 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' John Stone (Wed Feb 23 2011 - 16:54:55 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' Peter Freddolino (Thu Feb 24 2011 - 21:28:18 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' Francesco Pietra (Wed Feb 23 2011 - 10:42:55 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' John Stone (Wed Feb 23 2011 - 10:34:09 CST)
- Incorrect results from 'measure dipole -masscenter' Stphane Pezennec (Wed Feb 23 2011 - 07:24:02 CST)
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- atoms selection Iman Salehinia (Sat Feb 19 2011 - 16:33:27 CST)
- ParaTool alamng_at_uci.edu (Sat Feb 19 2011 - 15:43:36 CST)
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- Re: Compiling on Windows John Stone (Thu Feb 17 2011 - 14:40:24 CST)
- Re: Compiling on Windows David Joiner (Thu Feb 17 2011 - 19:57:13 CST)
- Re: Compiling on Windows Ajasja Ljubetič (Fri Feb 18 2011 - 04:03:41 CST)
- Re: Compiling on Windows John Stone (Fri Feb 18 2011 - 10:06:44 CST)
- Re: Compiling on Windows Ajasja Ljubetič (Fri Feb 18 2011 - 11:07:59 CST)
- Re: Compiling on Windows John Stone (Fri Feb 18 2011 - 11:51:14 CST)
- Re: Compiling on Windows John Stone (Fri Feb 18 2011 - 11:57:33 CST)
- Re: Compiling on Windows David Joiner (Fri Feb 18 2011 - 12:17:38 CST)
- Re: Compiling on Windows John Stone (Fri Feb 18 2011 - 12:29:42 CST)
- Re: Compiling on Windows David Joiner (Fri Feb 18 2011 - 15:29:45 CST)
- Re: Compiling on Windows David Joiner (Fri Feb 18 2011 - 22:10:37 CST)
- Re: Compiling on Windows John Stone (Fri Feb 18 2011 - 22:19:44 CST)
- Re: Compiling on Windows David Joiner (Sat Feb 19 2011 - 00:07:25 CST)
- Re: Compiling on Windows David Joiner (Mon Feb 21 2011 - 21:09:09 CST)
- Re: Compiling on Windows John Stone (Mon Feb 21 2011 - 21:28:02 CST)
- Re: Compiling on Windows David Joiner (Mon Feb 21 2011 - 21:42:48 CST)
- Re: Compiling on Windows John Stone (Mon Feb 21 2011 - 21:51:33 CST)
- Re: Compiling on Windows David Joiner (Tue Feb 22 2011 - 22:06:24 CST)
- Re: Compiling on Windows John Stone (Tue Feb 22 2011 - 22:09:56 CST)
- Re: Compiling on Windows David Joiner (Wed Feb 23 2011 - 10:20:35 CST)
- Re: Compiling on Windows John Stone (Wed Feb 23 2011 - 10:31:18 CST)
- Re: Compiling on Windows David Joiner (Wed Feb 23 2011 - 20:30:48 CST)
- Re: Compiling on Windows David Joiner (Wed Mar 23 2011 - 11:14:26 CDT)
- Re: Compiling on Windows John Stone (Thu Mar 24 2011 - 21:38:45 CDT)
- Re: Compiling on Windows David Joiner (Wed Mar 30 2011 - 10:04:46 CDT)
- Re: Compiling on Windows David Joiner (Thu Feb 17 2011 - 19:57:13 CST)
- Re: Compiling on Windows John Stone (Thu Feb 17 2011 - 14:40:24 CST)
- VMD Volmap ILS Error & Orient Function larac_at_berkeley.edu (Thu Feb 17 2011 - 12:13:40 CST)
- RE: VMD 1.9 beta 1 posted for download... Julie Grouleff (Thu Feb 17 2011 - 09:21:49 CST)
- Dynamically updating water colors for each frame of a trajectory J. Nathan Scott (Wed Feb 16 2011 - 17:17:28 CST)
- PBC & Solvate Tool in VMD Sharlene Denos (Wed Feb 16 2011 - 00:03:36 CST)
- PBC Option With Solvate Tool Sharlene Denos (Tue Feb 15 2011 - 23:31:00 CST)
- VMD 1.9 beta 1 posted for download... John Stone (Tue Feb 15 2011 - 19:26:31 CST)
- Re: VMD 1.9 beta 1 posted for download... John Stone (Wed Feb 16 2011 - 11:21:31 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Vlad Cojocaru (Wed Feb 16 2011 - 15:11:06 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Bjoern Olausson (Thu Feb 17 2011 - 05:37:48 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Joseph Bylund (Fri Feb 18 2011 - 11:19:38 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... John Stone (Fri Feb 18 2011 - 11:54:35 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Peter C. Lai (Tue Feb 22 2011 - 12:39:00 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... John Stone (Tue Feb 22 2011 - 12:45:55 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Peter C. Lai (Tue Feb 22 2011 - 12:51:56 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... John Stone (Wed Feb 23 2011 - 00:11:12 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Jrme Hnin (Wed Feb 23 2011 - 03:47:20 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... John Stone (Wed Feb 23 2011 - 15:05:00 CST)
- Re: VMD 1.9 beta 1 posted for download... John Stone (Wed Feb 16 2011 - 11:21:31 CST)
- DOPC membrane snoze pa (Tue Feb 15 2011 - 17:35:24 CST)
- bring z-axis along a new vector dhacademic (Tue Feb 15 2011 - 14:39:04 CST)
- conflict between VMD and Cygwin Li, Liwei (Mon Feb 14 2011 - 18:02:00 CST)
- setting different bond length for different atom pair Debasis Sengupta (Fri Feb 11 2011 - 12:01:44 CST)
- Re: setting different bond length for different atom pair Axel Kohlmeyer (Fri Feb 11 2011 - 13:00:56 CST)
- Re: only one model is displayed Joyce Tan (Fri Feb 11 2011 - 10:50:31 CST)
- only one model is displayed Joyce Tan (Fri Feb 11 2011 - 09:56:39 CST)
- dipole / move (align) Stphane Pezennec (Fri Feb 11 2011 - 08:25:43 CST)
- One more psfgen question Marc Charendoff (Thu Feb 10 2011 - 15:40:14 CST)
- how to update the selection in NAMDEnergy juan roman (Tue Feb 08 2011 - 20:02:15 CST)
- Re: Fwd: [multiple topology files and resetpsf] Jim Phillips (Tue Feb 08 2011 - 14:49:48 CST)
- psfgen script for VMD 1.8.7 Marc Charendoff (Tue Feb 08 2011 - 12:26:25 CST)
- multiple topology files and resetpsf Goldsmith, Jacob (Tue Feb 08 2011 - 10:11:54 CST)
- Displaying an overlay of multiple structures with VMD B.M.B. Vanschouwen (Tue Feb 08 2011 - 09:19:45 CST)
- VMD Volmap ILS Error larac_at_berkeley.edu (Mon Feb 07 2011 - 18:23:21 CST)
- Multiseq in text mode Ekta Khurana (Mon Feb 07 2011 - 13:11:57 CST)
- Re: Multiseq in text mode Axel Kohlmeyer (Mon Feb 07 2011 - 19:33:48 CST)
- Re: Multiseq in text mode John Stone (Mon Feb 07 2011 - 20:30:11 CST)
- Re: Multiseq in text mode Ekta Khurana (Mon Feb 07 2011 - 23:33:00 CST)
- Re: Multiseq in text mode Jrme Hnin (Tue Feb 08 2011 - 03:43:39 CST)
- Re: Multiseq in text mode Ekta Khurana (Tue Feb 08 2011 - 08:06:16 CST)
- Re: Multiseq in text mode Leonardo Trabuco (Tue Feb 08 2011 - 08:18:44 CST)
- Re: Multiseq in text mode Anurag Sethi (Tue Feb 08 2011 - 12:11:29 CST)
- Re: Multiseq in text mode Ekta Khurana (Wed Feb 09 2011 - 13:23:19 CST)
- Re: Multiseq in text mode Kirby Vandivort (Tue Feb 08 2011 - 11:49:43 CST)
- Re: Multiseq in text mode Ekta Khurana (Mon Feb 07 2011 - 23:33:00 CST)
- ERROR while using PSF builder vani panguluri (Mon Feb 07 2011 - 11:29:09 CST)
- Helix motions ban arn (Mon Feb 07 2011 - 05:29:31 CST)
- graphical representations over a number of molecule files Stephen Cox (Sun Feb 06 2011 - 14:38:30 CST)
- CA distance command ban arn (Thu Feb 03 2011 - 08:16:14 CST)
- Adding missing residues to a protein sriteja mantha (Wed Feb 02 2011 - 23:40:47 CST)
- CG_MD temperature Sibel Cakan (Wed Feb 02 2011 - 17:56:12 CST)
- a detail about PSFGENv1.4 Seth Tanner (Wed Feb 02 2011 - 12:49:37 CST)
- Re: USING IED for essential dynamics in VMD bharat gupta (Tue Feb 01 2011 - 18:38:39 CST)
- Installation problem with VMD, Multiseq, and BLAST David Guertin (Tue Feb 01 2011 - 10:49:24 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST Kirby Vandivort (Tue Feb 01 2011 - 11:08:55 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST David Guertin (Tue Feb 01 2011 - 12:50:04 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST Kirby Vandivort (Tue Feb 01 2011 - 14:19:55 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST David Guertin (Thu Feb 03 2011 - 16:00:11 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST John Stone (Thu Feb 03 2011 - 16:10:24 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST David Guertin (Tue Feb 01 2011 - 12:50:04 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST Kirby Vandivort (Tue Feb 01 2011 - 11:08:55 CST)
- Installation problem with VMD, Multiseq, and BLAST David Guertin (Tue Feb 01 2011 - 10:15:48 CST)
- water molecule count ban arn (Tue Feb 01 2011 - 08:56:55 CST)
- Side-chain Dihedrals ban arn (Tue Feb 01 2011 - 05:07:19 CST)
- Re: using IED interface in VMD 1.8.7 windows bharat gupta (Tue Feb 01 2011 - 02:51:45 CST)
- How to use VMD script "PorcupinePlot.tcl" B.M.B. Vanschouwen (Mon Jan 31 2011 - 10:46:55 CST)
- vmd draw command for text kaushik lakkaraju (Sun Jan 30 2011 - 12:32:01 CST)
- CG Builder mohamad rahimi (Sun Jan 30 2011 - 03:31:23 CST)
- License question Gianluca Interlandi (Sat Jan 29 2011 - 16:19:27 CST)
- Re: Trouble rendering tranparent atoms with Tachyon Ajasja Ljubeti (Fri Jan 28 2011 - 09:06:11 CST)
- illegal stereo mode Nicolas Belloy (Fri Jan 28 2011 - 08:34:28 CST)
- vrml2 output crashes VTK/Paraview Peter C. Lai (Thu Jan 27 2011 - 19:14:25 CST)
- RE: How can I add bonds ? Germain Salvato Vallverdu (Thu Jan 27 2011 - 14:31:08 CST)
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- Slower FPS in dual monitor systems? Ramon Crehuet (Thu Jan 27 2011 - 07:24:03 CST)
- removing all water molecules ahmet yldrm (Thu Jan 27 2011 - 06:51:34 CST)
- Re: removing all water molecules Dudo (Thu Jan 27 2011 - 07:40:16 CST)
- Re: removing all water molecules Axel Kohlmeyer (Thu Jan 27 2011 - 08:08:27 CST)
- Re: removing all water molecules Ajasja Ljubetič (Thu Jan 27 2011 - 07:37:57 CST)
- Re: removing all water molecules Joshua Adelman (Thu Jan 27 2011 - 08:24:09 CST)
- Re: removing all water molecules Salvatore Mario Cosseddu (Thu Jan 27 2011 - 09:14:40 CST)
- a problem about multiplot superdirac (Wed Jan 26 2011 - 20:01:18 CST)
- Question regarding g(r) utility Narayanan Veeraraghavan (Wed Jan 26 2011 - 17:30:33 CST)
- GLSL with ATI 5750 in Mac OS X 10.6 / 64-bit build Joshua A. Anderson (Wed Jan 26 2011 - 14:17:05 CST)
- Re: GLSL with ATI 5750 in Mac OS X 10.6 / 64-bit build John Stone (Wed Jan 26 2011 - 14:31:53 CST)
- a script for angular distribution David Wedner (Wed Jan 26 2011 - 11:41:51 CST)
- a script for angular distribution David Wedner (Wed Jan 26 2011 - 10:44:34 CST)
- duplicate frames / slow down movie Nicolas Belloy (Tue Jan 25 2011 - 07:50:10 CST)
- Secondary Structure of alkane polymers Manish Agarwal (Mon Jan 24 2011 - 15:43:47 CST)
- How can I add bonds ? Germain Salvato Vallverdu (Mon Jan 24 2011 - 09:01:39 CST)
- draw bond across cell boudary pascal boulet (Thu Jan 20 2011 - 15:47:44 CST)
- question from a tutorial Lisa Brown (Thu Jan 20 2011 - 14:17:29 CST)
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- Displaying Bead and Bonds Phelan Jr., Frederick R. Dr. (Wed Jan 19 2011 - 13:32:48 CST)
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- Where can I download VMD alpha version Nima Nouri (Sat Jan 15 2011 - 09:30:16 CST)
- problem in extracting frame number dhacademic (Thu Jan 13 2011 - 09:45:16 CST)
- FW: Issues with Paratools and Gaussian Ali, Rejwan (Wed Jan 12 2011 - 11:57:16 CST)
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- Truncated octahedron Box francesco oteri (Wed Jan 12 2011 - 04:43:17 CST)
- Issues with Paratools and Gaussian Ali, Rejwan (Tue Jan 11 2011 - 14:51:18 CST)
- namd energy plugin error: toplevel Michela Candotti (Tue Jan 11 2011 - 04:09:14 CST)
- a guide for installing vmd-1.8.7 on ubuntu10.10 (LINUXAMD64) Andrew Jewett (Mon Jan 10 2011 - 19:56:23 CST)
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- volumetric trajectory Fahimeh Baftizadeh (Mon Jan 10 2011 - 04:50:46 CST)
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- Re: vmd with 3d vision Axel Kohlmeyer (Fri Jan 07 2011 - 16:20:40 CST)
- Re: vmd with 3d vision Yubo Fan (Fri Jan 07 2011 - 16:27:31 CST)
- Re: vmd with 3d vision Axel Kohlmeyer (Fri Jan 07 2011 - 16:34:33 CST)
- Re: vmd with 3d vision Yubo Fan (Fri Jan 07 2011 - 16:46:10 CST)
- Re: vmd with 3d vision Axel Kohlmeyer (Fri Jan 07 2011 - 16:50:24 CST)
- Re: vmd with 3d vision Yubo Fan (Fri Jan 07 2011 - 16:56:41 CST)
- Re: vmd with 3d vision Axel Kohlmeyer (Fri Jan 07 2011 - 16:59:21 CST)
- Re: vmd with 3d vision John Stone (Fri Jan 07 2011 - 17:04:27 CST)
- Re: vmd with 3d vision Yubo Fan (Fri Jan 07 2011 - 16:27:31 CST)
- Re: vmd with 3d vision Axel Kohlmeyer (Fri Jan 07 2011 - 16:20:40 CST)
- Re: Binary request Axel Kohlmeyer (Fri Jan 07 2011 - 09:01:48 CST)
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- (no subject) Sibel Cakan (Mon Jan 03 2011 - 04:15:23 CST)
- the IR spetra calculation module - from MD trajectory Jun Zhao (Sat Jan 01 2011 - 15:12:48 CST)
- Re: how to make the picture size suitable for the image size in pov file ? Cun Zhang (Fri Dec 31 2010 - 20:08:42 CST)
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- MOE and NAMD Bharat Kumar (Wed Dec 29 2010 - 09:55:21 CST)
- psfgen or autopsf leila karami (Sun Dec 26 2010 - 08:11:34 CST)
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- "Hands-On" Workshop on Computational Biophysics, March 21-25, 2011, Atlanta, GA, USA David Brandon (Tue Dec 21 2010 - 14:38:16 CST)
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- RMSD and PSF generation Bharat Kumar (Mon Dec 20 2010 - 21:29:48 CST)
- selection of amino acids with certain distance each others leila karami (Sun Dec 19 2010 - 13:00:23 CST)
- Re: selection of amino acids with certain distance each others Axel Kohlmeyer (Sun Dec 19 2010 - 13:59:02 CST)
- Re: selection of amino acids with certain distance each others Ajasja Ljubetič (Sun Dec 19 2010 - 14:07:03 CST)
- Re: selection of amino acids with certain distance each others Joshua Adelman (Sun Dec 19 2010 - 15:00:40 CST)
- xterm zaizhi lai (Fri Dec 17 2010 - 18:52:30 CST)
- delete water molecules siddesh southekal (Fri Dec 17 2010 - 07:18:17 CST)
- Save Atom Selection to DCD David Huggins (Wed Dec 15 2010 - 13:46:16 CST)
- why atom positions are reset after readpsf, coordpdb commands? ع (Wed Dec 15 2010 - 03:37:53 CST)
- problem regarding the MC trajectory Ramya Narasimhan (Wed Dec 15 2010 - 00:41:46 CST)
- Paratool Tutorial Jacqueline Cawthray (Tue Dec 14 2010 - 14:01:59 CST)
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- (no subject) Olimpia Popko (Tue Dec 07 2010 - 05:08:50 CST)
- apocynin/1k4u vani panguluri (Mon Dec 06 2010 - 13:50:06 CST)
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- Bug in AutoIMD Tristan Croll (Sun Dec 05 2010 - 19:42:50 CST)
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- use gelato render with VMD 1.8.7 for movie ABEL Stephane 175950 (Thu Dec 02 2010 - 06:22:36 CST)
- order of atoms in an improper dihedral matziast_at_med.uth.gr (Thu Dec 02 2010 - 04:10:41 CST)
- order of atoms in an improper dihedral matziast_at_med.uth.gr (Thu Dec 02 2010 - 03:31:35 CST)
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- Re: namd-l: wrapping problem Ramya Gamini (Wed Dec 01 2010 - 11:37:26 CST)
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- per-residue alignment Antonija Tomi (Wed Dec 01 2010 - 02:24:33 CST)
- reading of one frame from DCD file JhonY. I. (Tue Nov 30 2010 - 18:13:14 CST)
- reading of one frame from DCD file JhonY. I. (Tue Nov 30 2010 - 18:12:03 CST)
- print numerical values in a Ramachandran plot Rebeca Garca Fandio (Tue Nov 30 2010 - 17:01:12 CST)
- Re: print numerical values in a Ramachandran plot Ajasja Ljubetič (Wed Dec 01 2010 - 01:54:32 CST)
- RE: print numerical values in a Ramachandran plot Rebeca Garca Fandio (Wed Dec 01 2010 - 09:56:45 CST)
- rotate a selection of a molecule and write rotated coordinates Rebeca Garca Fandio (Tue Feb 19 2013 - 08:45:30 CST)
- Re: rotate a selection of a molecule and write rotated coordinates Axel Kohlmeyer (Tue Feb 19 2013 - 10:07:23 CST)
- RE: rotate a selection of a molecule and write rotated coordinates Rebeca Garca Fandio (Wed Feb 20 2013 - 03:38:02 CST)
- Re: rotate a selection of a molecule and write rotated coordinates Axel Kohlmeyer (Wed Feb 20 2013 - 04:03:54 CST)
- RE: rotate a selection of a molecule and write rotated coordinates Rebeca Garca Fandio (Wed Feb 20 2013 - 04:07:55 CST)
- Re: print numerical values in a Ramachandran plot Ajasja Ljubetič (Wed Dec 01 2010 - 01:54:32 CST)
- top2psf - bridging_waters.tcl script leila karami (Tue Nov 30 2010 - 00:41:58 CST)
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- missing fragments in molefacture Irene Newhouse (Mon Nov 29 2010 - 16:08:46 CST)
- RMSD Question snoze pa (Sun Nov 28 2010 - 11:08:25 CST)
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- subtlety with PSFGEN - angle/dihedral regeneration Erik Nordgren (Wed Nov 24 2010 - 20:55:06 CST)
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- does vmd allow change in volume David Wedner (Thu Nov 18 2010 - 12:57:00 CST)
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- Problem With No Atoms In Selection David Huggins (Tue Nov 16 2010 - 14:35:20 CST)
- Re: How to Measure Radius of gyration David Wedner (Tue Nov 16 2010 - 13:24:05 CST)
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- Re: Rendering .dat files created from Movie Maker using Tachyon Axel Kohlmeyer (Tue Nov 16 2010 - 10:43:38 CST)
- Re: Rendering .dat files created from Movie Maker using Tachyon Eduard Schreiner (Tue Nov 16 2010 - 11:25:07 CST)
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- Re: Headtracking software Ajasja Ljubetič (Tue Nov 16 2010 - 09:00:27 CST)
- Re: Headtracking software Biff Forbush (Tue Nov 16 2010 - 11:01:00 CST)
- Re: Headtracking software Biff Forbush (Tue Nov 16 2010 - 12:37:21 CST)
- Re: Headtracking software John Stone (Tue Nov 16 2010 - 15:23:14 CST)
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- Measure Radius of gyration David Wedner (Mon Nov 15 2010 - 12:31:15 CST)
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- Re: Graphics card for VMD, number of atoms, file format Axel Kohlmeyer (Mon Nov 08 2010 - 12:38:46 CST)
- Re: Graphics card for VMD, number of atoms, file format Andrew (Mon Nov 08 2010 - 14:29:07 CST)
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- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 11:04:36 CDT)
- Re: problem at convert single trajectory frame to pdb John Stone (Tue Oct 19 2010 - 11:39:47 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 11:58:00 CDT)
- Re: problem at convert single trajectory frame to pdb John Stone (Tue Oct 19 2010 - 12:03:43 CDT)
- Re: problem at convert single trajectory frame to pdb Axel Kohlmeyer (Tue Oct 19 2010 - 12:53:31 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 21:58:16 CDT)
- Re: problem at convert single trajectory frame to pdb Axel Kohlmeyer (Tue Oct 19 2010 - 22:04:44 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 22:41:27 CDT)
- Re: problem at convert single trajectory frame to pdb John Stone (Tue Oct 19 2010 - 12:35:58 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 12:38:24 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 11:04:36 CDT)
- Re: problem at convert single trajectory frame to pdb Nicholas Musolino (Tue Oct 19 2010 - 12:10:51 CDT)
- Re: problem at convert single trajectory frame to pdb John Stone (Tue Oct 19 2010 - 10:45:43 CDT)
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- Re: Bond Colors Axel Kohlmeyer (Wed Oct 13 2010 - 12:38:18 CDT)
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- Re: Bond Colors Axel Kohlmeyer (Wed Oct 13 2010 - 09:41:00 CDT)
- IED 2.02 and VMD 1.8.7 Birgitte Maria Elisabeth Brydsoe (Wed Oct 13 2010 - 08:33:00 CDT)
- Re: IED 2.02 and VMD 1.8.7 Axel Kohlmeyer (Wed Oct 13 2010 - 09:23:19 CDT)
- Re: IED 2.02 and VMD 1.8.7 Hannes Loeffler (Wed Oct 13 2010 - 09:24:33 CDT)
- Selecting by X-coordinate Keith Battle (Tue Oct 12 2010 - 17:31:02 CDT)
- Real-time ambient occlusion lighting Ajasja Ljubetič (Tue Oct 12 2010 - 15:54:00 CDT)
- Combined "Within" atom selection jonathan (Mon Oct 11 2010 - 11:59:08 CDT)
- How to stop a script (eg : source myscript.tcl) ? TRINH Minh Hieu (Mon Oct 11 2010 - 07:34:31 CDT)
- Re: psf gen charmm format Hannes Loeffler (Mon Oct 11 2010 - 07:25:58 CDT)
- Orientation an rotation of molecules in a movie Daniel Hornburg (Sat Oct 09 2010 - 07:26:21 CDT)
- Link Patch? Al-Ali, Hassan (Fri Oct 08 2010 - 23:39:15 CDT)
- Ubiquitin - patch? Al-Ali, Hassan (Thu Oct 07 2010 - 22:33:23 CDT)
- (no subject) Kei Sit (Thu Oct 07 2010 - 21:03:31 CDT)
- patch CT3 and ACE problems in PSFGEN Markus K. Dahlgren (Thu Oct 07 2010 - 15:11:52 CDT)
- missing frames in trajectory file Parisa Akhski (Wed Oct 06 2010 - 17:49:29 CDT)
- membrane_problem lara lara (Wed Oct 06 2010 - 00:29:39 CDT)
- aligning- on top of the bilayer lara lara (Wed Oct 06 2010 - 00:11:00 CDT)
- K-linked Ub, ACE patch, and autoPSF Al-Ali, Hassan (Tue Oct 05 2010 - 22:49:42 CDT)
- K-linked Ub, ACE patch, and autoPSF Al-Ali, Hassan (Tue Oct 05 2010 - 22:49:37 CDT)
- K-linked Ub, ACE patch, and autoPSF Al-Ali, Hassan (Tue Oct 05 2010 - 22:49:34 CDT)
- Query regarding RMSD calculcation hirdesh kumar (Tue Oct 05 2010 - 00:50:32 CDT)
- trouble with measure hbonds Charlotte Siska (Mon Oct 04 2010 - 15:01:36 CDT)
- Loading DCD Frames in Python David Huggins (Sat Oct 02 2010 - 05:16:05 CDT)
- load-traj for three dimensions Stefan Franzen (Fri Oct 01 2010 - 13:35:55 CDT)
- Interaction Energy Using Python David Huggins (Wed Sep 29 2010 - 11:04:25 CDT)
- IR Spectra plugin Agarwal, Silvi (Wed Sep 29 2010 - 10:59:59 CDT)
- Solvent accessible surface area change during MD run hirdesh kumar (Tue Sep 28 2010 - 04:54:14 CDT)
- Check out my photos on Facebook Aneesh Cna (Tue Sep 28 2010 - 04:27:52 CDT)
- Water-mediated hydrogen bonds ban arn (Tue Sep 28 2010 - 04:19:30 CDT)
- missing atoms yan zhang (Mon Sep 27 2010 - 08:42:07 CDT)
- protein breaks into parts after converting trajectory file to pdb file Joyce Tan (Mon Sep 27 2010 - 04:58:48 CDT)
- Experience with Asus Netbook Gianluca Interlandi (Sun Sep 26 2010 - 14:01:40 CDT)
- Re: Experience with Asus Netbook John Stone (Tue Sep 28 2010 - 10:45:08 CDT)
- Re: Experience with Asus Netbook TRINH Minh Hieu (Wed Sep 29 2010 - 12:59:46 CDT)
- Re: Re: Experience with Asus Netbook Gianluca Interlandi (Wed Sep 29 2010 - 15:18:53 CDT)
- Re: Re: Experience with Asus Netbook TRINH Minh Hieu (Wed Sep 29 2010 - 16:15:18 CDT)
- Re: Re: Experience with Asus Netbook Gianluca Interlandi (Wed Sep 29 2010 - 16:34:24 CDT)
- Re: Re: Experience with Asus Netbook Gianluca Interlandi (Wed Sep 29 2010 - 18:38:32 CDT)
- Re: Re: Experience with Asus Netbook Richard Cook (Wed Sep 29 2010 - 16:50:52 CDT)
- Re: Re: Experience with Asus Netbook Gianluca Interlandi (Wed Sep 29 2010 - 16:54:50 CDT)
- Re: Re: Experience with Asus Netbook TRINH Minh Hieu (Thu Sep 30 2010 - 01:53:08 CDT)
- Re: Re: Experience with Asus Netbook Gianluca Interlandi (Wed Sep 29 2010 - 15:18:53 CDT)
- implicit ligand sampling Marc Zimmer (Sat Sep 25 2010 - 06:26:24 CDT)
- Weird bonds in water box/sphere Sujata Sovani (Fri Sep 24 2010 - 18:51:27 CDT)
- IED/Tkinter problems Birgitte Maria Elisabeth Brydsoe (Fri Sep 24 2010 - 09:13:43 CDT)
- wheris sculptor.tcl Christian Wohlschlager (Fri Sep 24 2010 - 05:39:50 CDT)
- about psfgen patch Zhang, Jiong (MU-Student) (Thu Sep 23 2010 - 09:20:39 CDT)
- Clarification on solvent box sizing Ian Stokes-Rees (Wed Sep 22 2010 - 14:42:30 CDT)
- write pdbs of selected frames of a trajectory Katherine Parra (Wed Sep 22 2010 - 14:05:58 CDT)
- superimpose residues across several protein structures Joyce Tan (Wed Sep 22 2010 - 08:02:18 CDT)
- ppmtompeg Carla Jamous (Wed Sep 22 2010 - 07:52:42 CDT)
- psf gen charmm format Jorgen Simonsen (Wed Sep 22 2010 - 06:18:45 CDT)
- adding a metal ion Joyce Tan (Tue Sep 21 2010 - 20:39:43 CDT)
- Hydrogen bonds ban arn (Tue Sep 21 2010 - 11:17:10 CDT)
- movie rendering on MacOS 10.6 Neelanjana Sengupta (Mon Sep 20 2010 - 10:51:59 CDT)
- ppm files Carla Jamous (Mon Sep 20 2010 - 07:07:52 CDT)
- vmd can't display Pt-Cl bond 程昌利 (Mon Sep 20 2010 - 02:06:38 CDT)
- cg_ionize Sibel Cakan (Sun Sep 19 2010 - 16:37:15 CDT)
- cg ionization Sibel Cakan (Sun Sep 19 2010 - 15:28:14 CDT)
- cg ionization Sibel Cakan (Sun Sep 19 2010 - 15:16:06 CDT)
- minimization changed the occupancy of all atoms to zero Parisa Akhski (Fri Sep 17 2010 - 16:17:11 CDT)
- vmd_pdb file format Ramasamy, Ellankavi (Fri Sep 17 2010 - 11:43:18 CDT)
- vmd display water molecules error Cun Zhang (Fri Sep 17 2010 - 02:37:03 CDT)
- bigdcd + salt-bridge analysis Murpholino Peligro (Thu Sep 16 2010 - 15:31:58 CDT)
- maximum trajectory size? Murpholino Peligro (Thu Sep 16 2010 - 15:19:58 CDT)
- Compatibility with Orcad (PSpice) ? A. M. Carmen Prez (Thu Sep 16 2010 - 05:06:29 CDT)
- Mouse event listener Gianluca Interlandi (Wed Sep 15 2010 - 16:11:41 CDT)
- Mouse event listener Gianluca Interlandi (Wed Sep 15 2010 - 15:20:37 CDT)
- VMD for windows 64-bit Michel Espinoza-Fonseca (Wed Sep 15 2010 - 14:02:02 CDT)
- compile vmd Knut Jrgen Bjuland (Wed Sep 15 2010 - 11:54:17 CDT)
- Draw a box cell for a crystal Germain Vallverdu (Wed Sep 15 2010 - 06:43:35 CDT)
- H-bond life time Nicolas SAPAY (Wed Sep 15 2010 - 03:22:09 CDT)
- Autoionize question for DNA molecule Parisa Akhski (Tue Sep 14 2010 - 17:45:52 CDT)
- vasp POSCAR plugin Tawhid Ezaz (Tue Sep 14 2010 - 17:36:00 CDT)
- Re:vmd_start_problem_in_mac OSX Raman Parkesh (Tue Sep 14 2010 - 12:27:26 CDT)
- turning on the tcl/tk console in .vmdrc Rosanne Zeiler (Tue Sep 14 2010 - 06:18:13 CDT)
- Error encountered when quitting VMD on the Mac Ben Roberts (Mon Sep 13 2010 - 16:55:53 CDT)
- GLXBadLargeRequest and BadLength messages Moulton, Steve (Mon Sep 13 2010 - 15:43:32 CDT)
- phosphorylation modelling Zhang, Jiong (MU-Student) (Mon Sep 13 2010 - 15:11:49 CDT)
- compile windows binary in linux CLEMENTS, ROBERT (Mon Sep 13 2010 - 14:17:51 CDT)
- writepdb append Jacopo Sgrignani (Mon Sep 13 2010 - 05:49:20 CDT)
- Anaglyph rendering problem Ajasja Ljubetič (Mon Sep 13 2010 - 03:50:27 CDT)
- Use of parmtool plugin Christian Wohlschlager (Mon Sep 13 2010 - 01:38:01 CDT)
- Visualization problem with aromatic bromo atom? Meyer-Almes, Franz-Josef, Prof. Dr. (Sun Sep 12 2010 - 13:18:46 CDT)
- vmd.ps ̲ (Sun Sep 12 2010 - 11:14:49 CDT)
- (no subject) ̲ (Sun Sep 12 2010 - 11:12:01 CDT)
- change residue colors? Fatemesadat Emami (Fri Sep 10 2010 - 14:37:23 CDT)
- Distance lines Patargias, George (Thu Sep 09 2010 - 15:24:38 CDT)
- maximum trajectory size? Patrick Burney (Wed Sep 08 2010 - 19:04:38 CDT)
- Loss of VDW upon rendering with POV3 Stefan Oliver (Wed Sep 08 2010 - 14:10:34 CDT)
- two coloring method Tawhid Ezaz (Fri Sep 03 2010 - 17:18:38 CDT)
- problem about dowser Chen, Zhihong (chenz2) (Fri Sep 03 2010 - 16:38:05 CDT)
- Matrix based intermediate rotations Bogdan Costescu (Fri Sep 03 2010 - 05:50:40 CDT)
- Symposium on Accelerating Biology jani vinod (Fri Sep 03 2010 - 00:11:03 CDT)
- Problem with orient.tcl Salvador H-V (Thu Sep 02 2010 - 12:59:38 CDT)
- Best way to bond peptides Sujata Sovani (Wed Sep 01 2010 - 18:30:08 CDT)
- Best way to join two PDB fragments by a peptide bond Sujata Sovani (Wed Sep 01 2010 - 17:36:46 CDT)
- How to set the default mol style as VDW? Eric Grzelak (Wed Sep 01 2010 - 15:07:49 CDT)
- question about Ca-dist.tcl dhacademic (Wed Sep 01 2010 - 10:14:24 CDT)
- paratool error Goutham (Tue Aug 31 2010 - 20:02:30 CDT)
- vmd paratool - getting GAUSSIAN charges Goutham (Tue Aug 31 2010 - 10:51:48 CDT)
- Using Bigdcd with RMSD Trajectory tool in VMD Dan J Martingano (Mon Aug 30 2010 - 14:33:29 CDT)
- creating psf file unni kuttan (Mon Aug 30 2010 - 12:14:15 CDT)
- Faster secondary structure assignment Jrme Hnin (Mon Aug 30 2010 - 11:28:45 CDT)
- paratool doan dung (Sun Aug 29 2010 - 10:04:29 CDT)
- plugin for Abinit output files Rob (Sat Aug 28 2010 - 03:22:05 CDT)
- RMSD trajectory tool Parisa Akhski (Fri Aug 27 2010 - 13:06:40 CDT)
- Hydrogen bond angle hirdesh kumar (Fri Aug 27 2010 - 08:19:29 CDT)
- BB Trace Rex Palmer (Thu Aug 26 2010 - 14:49:39 CDT)
- showing the backbone trace of a cyclic peptide Rex Palmer (Thu Aug 26 2010 - 14:45:33 CDT)
- DCD Based on a parameter Pat Yee (Thu Aug 26 2010 - 09:01:51 CDT)
- vmd - rendering Ramasamy, Ellankavi (Wed Aug 25 2010 - 09:32:14 CDT)
- Re: runsqm plugin required but not installed John Stone (Tue Aug 24 2010 - 17:12:24 CDT)
- hydrophobic accessible surface area Jorgen Simonsen (Tue Aug 24 2010 - 13:55:20 CDT)
- [carlos.simmerling@gmail.com: Re: ACS award information, Oct 15 deadline] John Stone (Tue Aug 24 2010 - 09:48:02 CDT)
- Structure won't move after loading trajectory NG HUI WEN (Mon Aug 23 2010 - 19:40:36 CDT)
- converting old LAMMPS ASCII dumps Dan Lussier (Mon Aug 23 2010 - 19:08:01 CDT)
- OSX 10.6 support? Steve Smith (Mon Aug 23 2010 - 15:32:05 CDT)
- Problem with 'unwrap' Sandra Rennebaum (Mon Aug 23 2010 - 03:44:34 CDT)
- (no subject) Janani.S (Fri Aug 20 2010 - 22:39:10 CDT)
- POPC from charmm27 to charmm36 Raul Araya (Fri Aug 20 2010 - 18:43:00 CDT)
- RMSF calculation: residue wise hirdesh kumar (Fri Aug 20 2010 - 11:22:55 CDT)
- (no subject) yan zhang (Fri Aug 20 2010 - 03:54:47 CDT)
- catdcd usage with Desmond trajectory Irene Newhouse (Thu Aug 19 2010 - 16:19:10 CDT)
- VMD plus Phantom Christian Wohlschlager (Wed Aug 18 2010 - 11:04:42 CDT)
- plugin : membrane builder : "integer value too large to represent" Lepore, Bryan (Wed Aug 18 2010 - 10:21:07 CDT)
- Is it possible to load a part of a big xtc file faster... Alberto Sergio Garay (Wed Aug 18 2010 - 09:44:56 CDT)
- PQR parser failure in pqr plugin 0.5 and pqr plugin in latest alpha Knut Jrgen Bjuland (Wed Aug 18 2010 - 09:11:21 CDT)
- Re: tcl script Cun Zhang (Wed Aug 18 2010 - 03:25:21 CDT)
- tcl script deepti nayar (Wed Aug 18 2010 - 01:14:06 CDT)
- REMD + RBCG Gregorio Alanislobato (Tue Aug 17 2010 - 16:12:22 CDT)
- RSMD of coarse grained molecules Gregorio Alanislobato (Mon Aug 16 2010 - 12:13:59 CDT)
- workaround for DynamicBonds Georg Spiekermann (Mon Aug 16 2010 - 10:12:10 CDT)
- VMD 3D movies rendering Daniel Hornburg (Mon Aug 16 2010 - 05:07:59 CDT)
- Re: VMD 3D movies rendering Axel Kohlmeyer (Mon Aug 16 2010 - 08:40:36 CDT)
- Re: VMD 3D movies rendering John Stone (Mon Aug 16 2010 - 11:20:00 CDT)
- AW: VMD 3D movies rendering Daniel Hornburg (Tue Aug 17 2010 - 05:43:35 CDT)
- Re: VMD 3D movies rendering John Stone (Tue Aug 17 2010 - 09:39:58 CDT)
- AW: VMD 3D movies rendering Daniel Hornburg (Tue Aug 17 2010 - 10:50:30 CDT)
- RE: VMD 3D movies rendering Shore, Jay (Tue Aug 17 2010 - 13:34:31 CDT)
- Re: VMD 3D movies rendering John Stone (Tue Aug 17 2010 - 13:47:35 CDT)
- AW: VMD 3D movies rendering Daniel Hornburg (Wed Aug 18 2010 - 02:17:49 CDT)
- Re: VMD 3D movies rendering John Stone (Wed Aug 18 2010 - 13:53:52 CDT)
- AW: VMD 3D movies rendering Daniel Hornburg (Thu Aug 19 2010 - 03:23:43 CDT)
- Re: VMD 3D movies rendering John Stone (Mon Aug 16 2010 - 11:20:00 CDT)
- Re: VMD 3D movies rendering Axel Kohlmeyer (Mon Aug 16 2010 - 08:40:36 CDT)
- where can I download Tachyon version 0.98.10 ? Cun Zhang (Fri Aug 13 2010 - 23:06:19 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Axel Kohlmeyer (Sat Aug 14 2010 - 08:19:12 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Cun Zhang (Sun Aug 15 2010 - 08:01:14 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Cun Zhang (Mon Aug 16 2010 - 04:02:55 CDT)
- Re: where can I download Tachyon version 0.98.10 ? John Stone (Mon Aug 16 2010 - 11:08:36 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Ian Stokes-Rees (Mon Aug 16 2010 - 12:03:30 CDT)
- Re: where can I download Tachyon version 0.98.10 ? John Stone (Mon Aug 16 2010 - 12:54:37 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Cun Zhang (Wed Aug 18 2010 - 00:36:33 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Cun Zhang (Sun Aug 15 2010 - 08:01:14 CDT)
- Re: where can I download Tachyon version 0.98.10 ? John Stone (Sat Aug 14 2010 - 23:10:51 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Axel Kohlmeyer (Sat Aug 14 2010 - 08:19:12 CDT)
- "Hands-On" Workshop on Computational Biophysics, November 1-5, 2010 & November 29-December 3, 2010 in Urbana, IL TCBG Workshops (Thu Aug 12 2010 - 17:10:53 CDT)
- Interpreting a contact map Ian Stokes-Rees (Thu Aug 12 2010 - 16:17:12 CDT)
- VMD questions about animating residue distance lines and contact maps Ian Stokes-Rees (Thu Aug 12 2010 - 15:56:18 CDT)
- Solvent Accessible Surface R. Johnson (Thu Aug 12 2010 - 13:26:48 CDT)
- cant connect Novint Falcon with VMD Shawn (Thu Aug 12 2010 - 13:21:56 CDT)
- Re: cant connect Novint Falcon with VMD Axel Kohlmeyer (Thu Aug 12 2010 - 14:22:13 CDT)
- Re: cant connect Novint Falcon with VMD Shawn (Thu Aug 12 2010 - 14:28:06 CDT)
- Re: cant connect Novint Falcon with VMD Axel Kohlmeyer (Thu Aug 12 2010 - 14:37:14 CDT)
- Re: cant connect Novint Falcon with VMD Shawn (Thu Aug 12 2010 - 14:48:31 CDT)
- Re: cant connect Novint Falcon with VMD John Stone (Thu Aug 12 2010 - 15:00:17 CDT)
- Re: cant connect Novint Falcon with VMD Shawn (Thu Aug 12 2010 - 15:25:26 CDT)
- Re: cant connect Novint Falcon with VMD John Stone (Fri Aug 13 2010 - 12:55:06 CDT)
- Re: cant connect Novint Falcon with VMD Axel Kohlmeyer (Fri Aug 13 2010 - 14:30:28 CDT)
- Re: cant connect Novint Falcon with VMD John Stone (Fri Aug 13 2010 - 15:18:58 CDT)
- Re: cant connect Novint Falcon with VMD Axel Kohlmeyer (Fri Aug 13 2010 - 00:03:51 CDT)
- Re: cant connect Novint Falcon with VMD Shawn (Thu Aug 12 2010 - 14:28:06 CDT)
- Re: cant connect Novint Falcon with VMD Axel Kohlmeyer (Thu Aug 12 2010 - 14:22:13 CDT)
- About Atom Index Order Cun Zhang (Wed Aug 11 2010 - 20:59:08 CDT)
- Problem Material Studio/VMD candy deck (Wed Aug 11 2010 - 01:49:55 CDT)
- Solvate plug-in Charles Zhao (Tue Aug 10 2010 - 21:53:22 CDT)
- Writing Python Plugins properly jonathan (Mon Aug 09 2010 - 11:48:25 CDT)
- input file Agnieszka Sobkiewicz (Mon Aug 09 2010 - 06:41:18 CDT)
- ion bead (residue based CG) Demet Akten (Mon Aug 09 2010 - 05:34:26 CDT)