vmd-l By Date Most recent messages 2047 messages sorted by: [ author ] [ thread ] [ subject ] [ attachment ] ------------------------------------------------------------------------ Starting: Thu Dec 19 1996 - 11:40:41 CST Ending: Fri Sep 12 2003 - 15:16:53 CDT * Welcome to VMD-L! Andrew Dalke (Thu Dec 19 1996 - 11:40:38 CST) * Special Christmas binary Andrew Dalke (Fri Dec 20 1996 - 04:01:38 CST) * Mailing List John Hondroulis (Wed Jan 08 1997 - 14:30:26 CST) * Re: Welcome to VMD-L! T. Chyau Liang, Ph.D. (Wed Jan 08 1997 - 15:05:28 CST) * [Tech] Colors in VMD Andrew Dalke (Fri Jan 24 1997 - 11:44:45 CST) * Re: [Tech] Colors in VMD Chris Upton (Fri Jan 24 1997 - 11:55:13 CST) * Re: [Tech] Colors in VMD Andrew Dalke (Fri Jan 24 1997 - 15:24:38 CST) * Re: textures in VMD and rayshade scripts Andrew Dalke (Mon Jan 27 1997 - 15:42:15 CST) * [Tech] Customizing VMD: hot keys and popup menus Andrew Dalke (Fri Jan 31 1997 - 12:10:02 CST) * [VMDTECH] RMSD and best-fit alignments Andrew Dalke (Fri Feb 07 1997 - 14:37:24 CST) * [VMDTECH] Making Movies Andrew Dalke (Fri Feb 14 1997 - 12:56:27 CST) * VMD workshop material Andrew Dalke (Tue Feb 18 1997 - 17:43:13 CST) * [VMDTECH] Small things Andrew Dalke (Fri Feb 21 1997 - 13:02:34 CST) * [VMDTECH] Secondary Structure Andrew Dalke (Fri Feb 28 1997 - 16:38:21 CST) * why does VMD quit automatically? Qiang Liu (Tue Mar 04 1997 - 18:04:36 CST) * H-bonds? Andrea Bernini (Wed Mar 05 1997 - 06:36:47 CST) * Re: why does VMD quit automatically? Andrew Dalke (Wed Mar 05 1997 - 08:58:34 CST) * Re: H-bonds? Andrew Dalke (Wed Mar 05 1997 - 09:37:55 CST) * Updated VMD Script Library Jeff Ulrich (Wed Mar 05 1997 - 10:57:03 CST) * Re: why does VMD quit automatically? Andrew Dalke (Wed Mar 05 1997 - 11:50:27 CST) * VMD now uses Tcl 7.6 Andrew Dalke (Wed Mar 05 1997 - 22:47:42 CST) * [VMDTECH] Drawing Methods, Part I Andrew Dalke (Fri Mar 07 1997 - 16:22:57 CST) * Wavefront obj output David E. Jones (Wed Mar 12 1997 - 13:40:03 CST) * Re: Wavefront obj output Andrew Dalke (Wed Mar 12 1997 - 15:19:48 CST) * [VMDTECH] Drawing Methods, Part II Andrew Dalke (Fri Mar 14 1997 - 16:40:47 CST) * [VMDTECH] VMD 1.2b1 is now available Andrew Dalke (Tue Mar 25 1997 - 02:09:57 CST) * Re: [VMDTECH] VMD 1.2b1 is now available Andrew Dalke (Tue Mar 25 1997 - 03:03:32 CST) * building VMD on SGI IRIX 6.x Joseph Landman (Wed Mar 26 1997 - 11:55:35 CST) * Two (small) VMD 1.2b1 bugs Andrew Dalke (Wed Mar 26 1997 - 13:55:16 CST) * [VMDTECH] Morphing Andrew Dalke (Fri Mar 28 1997 - 12:14:17 CST) * [VMDTECH] Tracing Atom Picks Andrew Dalke (Fri Apr 04 1997 - 18:27:57 CST) * Segmentation error! Cheol Soon Lee (Wed Apr 09 1997 - 05:46:34 CDT) * Segmentation error! Cheol Soon Lee (Wed Apr 09 1997 - 05:47:56 CDT) * Error in Linux cheol@rccd.snu.ac.kr (Wed Apr 09 1997 - 05:51:13 CDT) * Re: Segmentation error! Andrew Dalke (Wed Apr 09 1997 - 10:46:36 CDT) * [VMDTECH] Smoothing Animations Andrew Dalke (Sun Apr 13 1997 - 01:28:43 CDT) * Run time error on Max Impact Brian Corrie (Wed Apr 16 1997 - 01:16:40 CDT) * [VMDTECH] Schedule Change Andrew Dalke (Fri Apr 18 1997 - 18:07:35 CDT) * VMD with Babel and chemical2vmd Kiraly Andras (Mon Apr 21 1997 - 18:35:26 CDT) * Re: VMD with Babel and chemical2vmd Stefan Grzybek (Tue Apr 22 1997 - 01:31:41 CDT) * Re: VMD with Babel and chemical2vmd Kiraly Andras (Tue Apr 22 1997 - 13:58:15 CDT) * [VMD TECH] Tracing VMD Variables (Part II) Jeff Ulrich (Wed Apr 30 1997 - 17:42:04 CDT) * Re: [VMD TECH] Tracing VMD Variables (Part II) Alexander Balaeff (Thu May 01 1997 - 16:29:52 CDT) * residue-residue distances and atom selection bug Andrew Dalke (Tue Jun 10 1997 - 13:05:11 CDT) * [VMDTECH] Hingefind Sergei Izrailev (Wed Jun 11 1997 - 16:45:17 CDT) * Re: [VMDTECH] Hingefind Willy Wriggers (Wed Jun 11 1997 - 16:57:22 CDT) * [VMDTECH] Working with colors Sergei Izrailev (Tue Jul 01 1997 - 20:21:43 CDT) * Latest Linux News? s.hogg@ic.ac.uk (Fri Jul 04 1997 - 13:58:40 CDT) * Exporting VMD images to Alias Andrew Dalke (Thu Jul 24 1997 - 14:28:40 CDT) * New VMD User's Guide available Sergei Izrailev (Tue Jul 29 1997 - 13:08:25 CDT) * Re: New VMD User's Guide available Sergei Izrailev (Wed Jul 30 1997 - 15:33:32 CDT) * Problems with vmd under Linux Simon Hogg (Thu Jul 31 1997 - 05:53:01 CDT) * rock around the clock? Christoph Schneider (Mon Oct 06 1997 - 11:02:46 CDT) * H-bonds Christoph Schneider (Mon Oct 06 1997 - 12:02:13 CDT) * Re: rock around the clock? Ivo Hofacker (Mon Oct 06 1997 - 21:25:08 CDT) * VMD & PoV files Mensur (Mon Oct 06 1997 - 19:34:47 CDT) * reading minimalised pdb files Nithin Rai (Tue Oct 07 1997 - 04:12:06 CDT) * Re: reading minimalised pdb files Andrew Dalke (Tue Oct 07 1997 - 04:34:33 CDT) * Re: VMD & PoV files Andrew Dalke (Wed Oct 08 1997 - 12:12:54 CDT) * MSMS in VMD Axel Berg (Tue Oct 14 1997 - 07:58:11 CDT) * Re: MSMS in VMD Andrew Dalke (Wed Oct 15 1997 - 00:30:42 CDT) * VMD only read 58 frames from XYZ file Keith Refson (Wed Nov 05 1997 - 06:42:17 CST) * Re: VMD only read 58 frames from XYZ file Ivo Hofacker (Wed Nov 05 1997 - 13:38:02 CST) * VMD only read 58 frames from XYZ file Keith Refson (Wed Nov 05 1997 - 13:56:40 CST) * Re: VMD only read 58 frames from XYZ file Andrew Dalke (Thu Nov 06 1997 - 04:24:54 CST) * drawing spheres Nithin Rai (Tue Nov 18 1997 - 11:34:14 CST) * Re: drawing spheres Andrew Dalke (Wed Nov 19 1997 - 08:03:35 CST) * stereo mode problems with vmd on IRIX 6.2 matt@clarkeconsulting.com (Thu Nov 20 1997 - 18:14:21 CST) * Release Date for v.1.2 ?? Simon Hogg (Thu Nov 20 1997 - 17:35:06 CST) * difficulties with starting vmd root (Sat Nov 29 1997 - 07:38:28 CST) * FIX:Re: difficulties with starting vmd (fwd) root (Mon Dec 01 1997 - 09:25:02 CST) * molecular representation: new lead generation software SciFarma (Tue Dec 02 1997 - 02:53:25 CST) * Re: molecular representation: new lead generation software root (Tue Dec 02 1997 - 06:18:33 CST) * Re: molecular representation: new lead generation software Salvatore Guccione (Wed Dec 03 1997 - 05:19:07 CST) * Re: molecular representation: new lead generation software Salvatore Guccione (Thu Dec 04 1997 - 04:43:51 CST) * tcl script for writinging modified pdb co-ordinates Nithin Rai (Thu Dec 04 1997 - 16:13:22 CST) * Re: tcl script for writinging modified pdb co-ordinates Andrew Dalke (Thu Dec 04 1997 - 18:41:03 CST) * Re: molecular representation: new lead generation software root (Fri Dec 05 1997 - 05:08:29 CST) * unable to animate alanine.dcd root (Sat Dec 06 1997 - 07:26:43 CST) * Re: unable to animate alanine.dcd Barry Isralewitz (Sat Dec 06 1997 - 07:30:28 CST) * Re: unable to animate alanine.dcd root (Sat Dec 06 1997 - 08:08:16 CST) * Re: unable to animate alanine.dcd Andrew Dalke (Sun Dec 07 1997 - 23:16:55 CST) * Re: unable to animate alanine.dcd root (Mon Dec 08 1997 - 03:41:44 CST) * DCD architecture dependence Jason Gans (Mon Dec 08 1997 - 08:58:10 CST) * Re: unable to animate alanine.dcd Andrew Dalke (Mon Dec 08 1997 - 13:34:06 CST) * problem with getting started. Rainer Fink (Fri Dec 19 1997 - 12:32:29 CST) * Re: problem with getting started. Andrew Dalke (Sun Dec 21 1997 - 11:47:00 CST) * RE: stereo mode problems with vmd on IRIX6.2 Thomas Ehmer (Mon Dec 29 1997 - 07:34:06 CST) * other-endian dcd problem also when trajectory obtained over network? root (Mon Dec 29 1997 - 09:19:31 CST) * Re: CCL:md rookie update Konrad Hinsen (Thu Jan 08 1998 - 06:50:36 CST) * FYI:Re: CCL:md rookie update (fwd) root (Thu Jan 08 1998 - 12:41:23 CST) * FYI:Re: CCL:md rookie update (fwd) root (Thu Jan 08 1998 - 12:41:39 CST) * FYI:CCL:md rookie update (fwd) root (Thu Jan 08 1998 - 12:42:37 CST) * FYI:Re: CCL:md rookie update (fwd) root (Thu Jan 08 1998 - 12:44:37 CST) * VMD on a DEC? s.hogg@ic.ac.uk (Wed Jan 14 1998 - 07:15:56 CST) * Re: VMD on a DEC? Andrew Dalke (Wed Jan 14 1998 - 22:07:30 CST) * protein surface and volume code Andrew Dalke (Wed Jan 14 1998 - 22:17:10 CST) * Surface plots s.hogg@ic.ac.uk (Tue Jan 20 1998 - 10:50:04 CST) * The pdb format of vmd Dayong He (Thu Jan 22 1998 - 11:01:58 CST) * Re: The pdb format of vmd Andrew Dalke (Thu Jan 22 1998 - 12:02:32 CST) * Babel and VMD aldo jongejan (Tue Mar 03 1998 - 11:05:07 CST) * Re: Babel and VMD Neil Henson T-12 (Tue Mar 03 1998 - 12:12:27 CST) * dihedral angles Stephane Spieser (Wed Apr 22 1998 - 09:09:34 CDT) * new version of VMD Sergei Izrailev (Thu Apr 30 1998 - 18:59:15 CDT) * VMD 1.2b2 is now available!!! Sergei Izrailev (Tue May 12 1998 - 18:29:10 CDT) * VMD 1.2b2 Linux & MSMS ... . (Sun May 17 1998 - 08:55:16 CDT) * RE: VMD 1.2b2 Linux & MSMS ... Ivo Hofacker (Wed May 20 1998 - 04:56:29 CDT) * problems with MSMS Patric Beuthen (Fri Jun 26 1998 - 08:38:12 CDT) * VMD 1.2b3 is available! John Stone (Fri Jun 26 1998 - 12:57:17 CDT) * measuring torsion angles Christoph Schneider (Mon Jun 29 1998 - 03:08:48 CDT) * VMD 1.2 port to MkLinux/LinuxPPC Tom Pollard (Mon Aug 10 1998 - 01:00:23 CDT) * VMDTECH: CONECTing atoms Andrew Dalke (Fri Aug 14 1998 - 17:16:26 CDT) * Re: problems with MSMS John Stone (Sat Aug 15 1998 - 22:00:51 CDT) * calculation of RMS values Christoph Schneider (Wed Aug 19 1998 - 04:05:51 CDT) * Re: calculation of RMS values Andrew Dalke (Wed Aug 19 1998 - 13:49:12 CDT) * VMDTECH: CONECTing atoms Keith Refson (Mon Aug 24 1998 - 09:28:47 CDT) * Re: VMDTECH: CONECTing atoms Andrew Dalke (Mon Aug 24 1998 - 15:01:05 CDT) * 99 Toyotas as low as 2% over invoice accutone@atlsky.com (Sat Sep 05 1998 - 19:10:53 CDT) * Transparent graphics Siegmar Kardinal (Sun Sep 13 1998 - 11:00:44 CDT) * Re: Transparent graphics Andrew Dalke (Fri Sep 18 1998 - 12:32:30 CDT) * Re: Transparent graphics John Stone (Fri Sep 18 1998 - 11:17:16 CDT) * convex hull and VMD Andrew Dalke (Mon Sep 28 1998 - 17:31:10 CDT) * Re: convex hull and VMD John Stone (Mon Sep 28 1998 - 17:05:51 CDT) * extracting distances David Horita (Wed Dec 09 1998 - 17:00:54 CST) * Re: extracting distances Andrew Dalke (Thu Dec 10 1998 - 20:06:25 CST) * VMD 1.3 Alpha 2 release... John Stone (Mon Jan 25 1999 - 20:57:45 CST) * Visualizing volumetric data with Situs and VMD Willy Wriggers (Mon Feb 01 1999 - 16:55:29 CST) * Stereo on SGI Octane 250HMz R10000, IRIX 6.5 Kim Vilbour Andersen (Fri Feb 12 1999 - 09:20:16 CST) * Re: Stereo on SGI Octane 250HMz R10000, IRIX 6.5 John Stone (Fri Feb 12 1999 - 09:30:37 CST) * Re: Stereo on SGI Octane 250HMz R10000, IRIX 6.5 Kim Vilbour Andersen (Mon Feb 15 1999 - 05:21:17 CST) * Re: Stereo on SGI Octane 250HMz R10000, IRIX 6.5 John Stone (Wed Feb 17 1999 - 00:43:56 CST) * VMD 1.3 Beta 1 release ... John Stone (Wed Feb 17 1999 - 02:08:02 CST) * VMD 1.3 Beta 2 release ... ¶¬ John Stone (Wed Feb 24 1999 - 13:38:37 CST) * 1.3b2 Keith Refson (Wed Mar 03 1999 - 11:51:13 CST) * Re: 1.3b2 John Stone (Wed Mar 03 1999 - 12:23:29 CST) * questions about MSMS and H-bonds Axel Berg (Fri Mar 05 1999 - 06:38:48 CST) * Re: questions about MSMS and H-bonds Andrew Dalke (Fri Mar 05 1999 - 14:54:07 CST) * Re: questions about MSMS and H-bonds Andrew Dalke (Fri Mar 05 1999 - 15:04:39 CST) * Re: 1.3b2 robert austin (Sun Mar 21 1999 - 16:31:34 CST) * moving molecules and getting the new positions Charles Schwieters (Tue Mar 30 1999 - 15:57:19 CST) * Re: moving molecules and getting the new positions Andrew Dalke (Tue Mar 30 1999 - 18:50:35 CST) * VMD 1.3 Release John Stone (Mon Apr 05 1999 - 16:46:35 CDT) * translations with fixed and unfixed molecules Charles Schwieters (Mon Apr 12 1999 - 16:27:28 CDT) * Re: translations with fixed and unfixed molecules Justin Gullingsrud (Tue Apr 13 1999 - 13:37:00 CDT) * Re: translations with fixed and unfixed molecules Andrew Dalke (Thu Apr 15 1999 - 23:18:33 CDT) * vmd and color Robert Milius (Thu Apr 22 1999 - 15:56:17 CDT) * Re: vmd and color Sergei Izrailev (Fri Apr 23 1999 - 10:50:40 CDT) * VMD 1.4 Alpha 1 (Windows) is available. John Stone (Wed May 19 1999 - 17:21:47 CDT) * 1999 VMD User Survey Report John Stone (Mon May 24 1999 - 15:21:56 CDT) * No Display when running vmd 1.3 Dr. David Gregory (Thu May 27 1999 - 14:53:51 CDT) * Re: No Display when running vmd 1.3 Dr. David Gregory (Fri May 28 1999 - 08:31:57 CDT) * Re: No Display when running vmd 1.3 Charles Schwieters (Thu May 27 1999 - 16:03:58 CDT) * Re: No Display when running vmd 1.3 John Stone (Thu May 27 1999 - 16:00:02 CDT) * VMD 1.4 Alpha 2 (Windows) is available. John Stone (Fri Jun 18 1999 - 16:24:12 CDT) * VMD 1.4 Alpha 3 (Windows+Unix) is available. John Stone (Tue Jul 27 1999 - 15:37:46 CDT) * VMD 1.4 Alpha 4 (Windows) is available. John Stone (Mon Aug 09 1999 - 17:00:50 CDT) * VMD 1.4 Alpha 5 (Windows+Unix) is available. John Stone (Tue Aug 17 1999 - 00:55:58 CDT) * how is dcd trajectory format ! Emmanuel Vamvakopoulos (Fri Aug 27 1999 - 14:18:04 CDT) * VMD and 3Dfx Glide Massimiliano Stengel (Mon Aug 30 1999 - 06:31:33 CDT) * Re: VMD and 3Dfx Glide John Stone (Mon Aug 30 1999 - 09:36:38 CDT) * Re: VMD and 3Dfx Glide Ivo Hofacker (Mon Aug 30 1999 - 11:01:15 CDT) * Re: VMD and 3Dfx Glide Massimiliano Stengel (Tue Aug 31 1999 - 06:47:27 CDT) * Re: VMD and 3Dfx Glide Massimiliano Stengel (Tue Aug 31 1999 - 08:44:05 CDT) * Re: VMD and 3Dfx Glide John Stone (Tue Aug 31 1999 - 09:16:59 CDT) * New VMD development pages John Stone (Mon Sep 27 1999 - 10:42:25 CDT) * Announce: VMD 1.4 beta 1 John Stone (Mon Oct 04 1999 - 17:07:49 CDT) * SEGMENT ID Deepak Singh (Tue Oct 19 1999 - 23:45:46 CDT) * Re: SEGMENT ID John Stone (Fri Oct 22 1999 - 09:21:01 CDT) * Re: SEGMENT ID Deepak Singh (Fri Oct 22 1999 - 09:30:09 CDT) * windows 98/ vmd14a2.exe & vmd14b1.exe francy@mvcch3.unica.it (Fri Oct 22 1999 - 12:52:43 CDT) * Re: windows 98/ vmd14a2.exe & vmd14b1.exe John Stone (Fri Oct 22 1999 - 13:12:52 CDT) * Re: windows 98/ vmd14a2.exe & vmd14b1.exe John Stone (Tue Oct 26 1999 - 15:35:34 CDT) * Problems with Charmm dcd Guy Coates (Wed Oct 27 1999 - 07:24:17 CDT) * Re: Problems with Charmm dcd John Stone (Wed Oct 27 1999 - 09:23:35 CDT) * SGI problem! Emmanuel Vamvakopoulos (Fri Oct 29 1999 - 07:57:27 CDT) * rmsd crashes vmd Kevin Sanbonmatsu (Thu Nov 04 1999 - 21:02:26 CST) * Re: rmsd crashes vmd John Stone (Sat Nov 06 1999 - 00:17:28 CST) * Announce: VMD 1.4 beta 2 John Stone (Tue Nov 09 1999 - 15:19:35 CST) * Re: rmsd crashes vmd 1.3 John Stone (Tue Nov 09 1999 - 21:59:58 CST) * Announce: VMD at Super Computing 99 Kirby Vandivort (Thu Nov 11 1999 - 16:32:51 CST) * font size Deepak Singh (Fri Nov 12 1999 - 13:38:53 CST) * question Deepak Singh (Sun Nov 14 1999 - 17:00:26 CST) * output Deepak Singh (Sun Nov 14 1999 - 19:48:57 CST) * Re: question John Stone (Mon Nov 15 1999 - 09:16:50 CST) * Re: output John Stone (Mon Nov 15 1999 - 10:40:20 CST) * VMD working on Linux i386 w/ Mesa & Nvidia doug irvine (Wed Nov 17 1999 - 14:19:21 CST) * Announce: VMD 1.4 beta 3 John Stone (Thu Nov 18 1999 - 16:08:16 CST) * Gromacs trajectories in VMD Gitte Iversen (Mon Nov 22 1999 - 01:22:02 CST) * Pegasus Technologies FreeD drivers? Eugene Leitl (Fri Nov 26 1999 - 19:39:54 CST) * Superimposing two molecules in VMD Gitte Iversen (Mon Nov 29 1999 - 02:38:09 CST) * Re: Pegasus Technologies FreeD drivers? John Stone (Wed Dec 08 1999 - 10:08:33 CST) * Re: Pegasus Technologies FreeD drivers? Eugene Leitl (Wed Dec 08 1999 - 15:05:42 CST) * Announce: VMD 1.4 beta 4 John Stone (Wed Dec 22 1999 - 16:40:53 CST) * VMD 1.4 Released (long) John Stone (Fri Jan 07 2000 - 17:59:02 CST) * 6DOF controllers Eugene Leitl (Sat Jan 08 2000 - 20:42:01 CST) * Re: 6DOF controllers John Stone (Sat Jan 08 2000 - 21:23:23 CST) * Stereo on SGI Indigo2? - Linux? Timm Essigke (Sat Jan 15 2000 - 10:11:49 CST) * Stereo on SGI Indigo2? - Linux? Eugene Leitl (Sat Jan 15 2000 - 19:35:26 CST) * Re: Stereo on SGI Indigo2? - Linux? John Stone (Wed Jan 19 2000 - 11:09:23 CST) * NVIDIA, SGI and VA Linux To Bring Graphics Standard To Desktop Linux Market Eugene Leitl (Wed Jan 19 2000 - 19:21:19 CST) * script for generating stereo postscript images Charles@Schwieters.org (Fri Feb 11 2000 - 14:53:32 CST) * Re: script for generating stereo postscript images John Stone (Fri Feb 11 2000 - 15:55:06 CST) * AD:Family Reunion T Shirts & More hifiber7@compuserve.com (Sat Feb 12 2000 - 02:20:20 CST) * SGI O2 stereo problems Bogdan Costescu (Tue Feb 15 2000 - 13:33:15 CST) * Setting colors Timm Essigke (Thu Feb 17 2000 - 16:04:33 CST) * Re: Setting colors Justin Gullingsrud (Fri Feb 18 2000 - 10:25:50 CST) * msms & vmd Robert Milius (Fri Feb 18 2000 - 11:51:29 CST) * Re: msms & vmd John Stone (Fri Feb 18 2000 - 12:11:25 CST) * AD:Family Reunion T Shirts & More hifiber7@compuserve.com (Sat Feb 19 2000 - 11:12:59 CST) * Remote Control Timm Essigke (Mon Feb 21 2000 - 12:12:44 CST) * B-factor Plot Paul Hubbard (Mon Feb 28 2000 - 17:06:33 CST) * Graphics algorithm Vieri Di Paola (Wed Mar 01 2000 - 03:59:15 CST) * Graphics algorithm (fwd) Vieri Di Paola (Wed Mar 01 2000 - 04:30:58 CST) * Re: Graphics algorithm (fwd) John Stone (Wed Mar 01 2000 - 09:30:42 CST) * Re: Graphics algorithm (fwd) Vieri Di Paola (Wed Mar 01 2000 - 10:41:41 CST) * Re: Graphics algorithm II (fwd) Vieri Di Paola (Wed Mar 01 2000 - 11:03:48 CST) * ANNOUNCEMENT: BioCoRe Robert Brunner (Fri Mar 03 2000 - 10:22:28 CST) * Re: SGI O2 stereo problems Bogdan Costescu (Wed Mar 08 2000 - 14:43:38 CST) * Re: SGI O2 stereo problems John Stone (Wed Mar 08 2000 - 15:04:34 CST) * Re: SGI O2 stereo problems Bogdan Costescu (Thu Mar 09 2000 - 08:00:27 CST) * Re: SGI O2 stereo problems Ben Cornett (Thu Mar 09 2000 - 12:13:20 CST) * MSMS in VMD Xiao-Ping Zhang (Fri Mar 17 2000 - 07:53:22 CST) * Re: MSMS in VMD John Stone (Fri Mar 17 2000 - 09:16:16 CST) * Re: MSMS in VMD Xiao-Ping Zhang (Fri Mar 17 2000 - 08:28:32 CST) * VMD 1.5a1 is available... John Stone (Fri Mar 17 2000 - 10:01:47 CST) * Re: Stereo on Linux? John Stone (Fri Mar 17 2000 - 16:18:09 CST) * Re: MSMS in VMD Xiao-Ping Zhang (Sat Mar 18 2000 - 14:00:37 CST) * Real Cash, Real Profit....Believe it !!! cashprofit3@address.com (Tue Mar 21 2000 - 00:09:55 CST) * membrane modeling Kemikal Kid Kolby (Sat Mar 25 2000 - 18:17:52 CST) * Re: membrane modeling Peter Tieleman (Sat Mar 25 2000 - 18:43:50 CST) * membrane modeling Eugene Leitl (Sat Mar 25 2000 - 19:03:56 CST) * MSMS help Andrew Hall (Mon Apr 03 2000 - 15:04:30 CDT) * Re: MSMS help John Stone (Mon Apr 03 2000 - 15:19:25 CDT) * surface in raster3d Dr Nicolas Le Novere (Thu Apr 06 2000 - 07:18:30 CDT) * Re: surface in raster3d John Stone (Thu Apr 06 2000 - 10:42:51 CDT) * VMD 1.5a2 is available... John Stone (Thu Apr 06 2000 - 17:50:42 CDT) * problem with vmd/namd connection on linux John Duff (Tue Apr 18 2000 - 17:35:03 CDT) * Re: problem with vmd/namd connection on linux John Stone (Tue Apr 18 2000 - 18:49:25 CDT) * Re: problem with vmd/namd connection on linux John Duff (Wed Apr 19 2000 - 10:25:46 CDT) * Mouse behavior in VMD Justin Gullingsrud (Mon Apr 24 2000 - 10:16:12 CDT) * Remote control of VMD on SGI-NT mixture Andrew Hall (Wed Apr 26 2000 - 11:11:50 CDT) * graphing a dihedral Deepak Singh (Sat May 13 2000 - 20:48:31 CDT) * Re: graphing a dihedral Justin Gullingsrud (Sun May 14 2000 - 17:07:30 CDT) * VMD on XFree86 4.0 /w hardware acceleration... John Stone (Fri May 19 2000 - 18:22:39 CDT) * cns files Matthew Wilce (Sun May 21 2000 - 05:28:05 CDT) * using trackers Kimberly Ann Foster (Tue May 23 2000 - 16:09:40 CDT) * Re: using trackers John Stone (Wed May 24 2000 - 09:54:10 CDT) * VMD 1.5b1 is available! John Stone (Thu May 25 2000 - 14:18:24 CDT) * Re: VMD on XFree86 4.0 /w hardware acceleration... John Stone (Thu May 25 2000 - 22:14:34 CDT) * More than 99999 atoms? Keith Refson (Fri May 26 2000 - 06:24:38 CDT) * Re: More than 99999 atoms? David Norris (Fri May 26 2000 - 09:51:19 CDT) * POV render fails 2nd time Keith Refson (Fri May 26 2000 - 13:00:39 CDT) * Re: POV failure 2nd try Keith Refson (Fri May 26 2000 - 13:09:04 CDT) * Re: POV failure 2nd try John Stone (Fri May 26 2000 - 13:24:42 CDT) * Re: POV render fails 2nd time David Norris (Fri May 26 2000 - 15:15:51 CDT) * Re: More than 99999 atoms? Dr Nicolas Le Novere (Mon May 29 2000 - 08:04:29 CDT) * File patterns Luis Gracia (Tue May 30 2000 - 09:58:38 CDT) * Re: File patterns Justin Gullingsrud (Tue May 30 2000 - 14:00:15 CDT) * (No Subject) prachi singh (Mon Jun 05 2000 - 08:26:51 CDT) * Re: Prachi Singh's mail Barry Isralewitz (Mon Jun 05 2000 - 16:19:59 CDT) * Re: Prachi Singh's mail Daniel Barsky (Mon Jun 05 2000 - 16:35:06 CDT) * Problems with VMD 1.5b1 and XFree4/DRI OpenGL under linux Miguel Teodoro (Tue Jun 13 2000 - 18:39:48 CDT) * GRASP files Andrew Hall (Wed Jun 14 2000 - 10:17:27 CDT) * Re: GRASP files Paul Hubbard (Wed Jun 14 2000 - 11:10:34 CDT) * Please unsubscribe me from VMD mailing list Scott W. Sides (Wed Jun 14 2000 - 11:39:20 CDT) * Re: GRASP files Justin Gullingsrud (Wed Jun 14 2000 - 14:37:01 CDT) * VMD and GRASP Qu.II Paul Hubbard (Wed Jun 14 2000 - 15:16:23 CDT) * VMD command line Windows98 Heiko Carstens (Thu Jun 15 2000 - 03:28:38 CDT) * Re: VMD and GRASP Qu.II Andrew Dalke (Thu Jun 15 2000 - 04:23:39 CDT) * Re: VMD and GRASP Qu.II Lothar Esser (Thu Jun 15 2000 - 09:09:52 CDT) * Re: VMD and GRASP Qu.II Paul Hubbard (Thu Jun 15 2000 - 10:08:22 CDT) * Re: VMD and GRASP Qu.II Scott W. Sides (Thu Jun 15 2000 - 10:14:14 CDT) * Re: VMD and GRASP Qu.II Lothar Esser (Thu Jun 15 2000 - 10:33:42 CDT) * vmd/namd connection in linux Kim Foster (Thu Jun 15 2000 - 15:58:08 CDT) * Re: vmd/namd connection in linux Justin Gullingsrud (Thu Jun 15 2000 - 17:05:51 CDT) * Re: VMD command line Windows98 John Stone (Sun Jun 18 2000 - 10:59:25 CDT) * stereo postscript rendering Charles@Schwieters.org (Tue Jun 20 2000 - 08:04:27 CDT) * Pretty Picture Paul Hubbard (Wed Jun 21 2000 - 16:15:59 CDT) * Re: Pretty Picture erik vogan (Wed Jun 21 2000 - 22:24:30 CDT) * Re: Pretty Picture Justin Gullingsrud (Fri Jun 23 2000 - 12:18:47 CDT) * VMD runs on the T3E! Justin Gullingsrud (Sat Jun 24 2000 - 22:37:13 CDT) * Re: Problems with VMD 1.5b1 and XFree4/DRI OpenGL under linux John Stone (Mon Jun 26 2000 - 15:57:45 CDT) * DCD command-line options Timm Essigke (Tue Jun 27 2000 - 11:55:16 CDT) * Re: DCD command-line options John Stone (Wed Jun 28 2000 - 11:05:34 CDT) * VMD 1.5 is available! John Stone (Wed Jun 28 2000 - 15:46:17 CDT) * Re: Problems with VMD 1.5b1 and XFree4/DRI OpenGL under linux Miguel Teodoro (Thu Jun 29 2000 - 11:37:34 CDT) * Re: Problems with VMD 1.5b1 and XFree4/DRI OpenGL under linux John Stone (Thu Jun 29 2000 - 15:12:53 CDT) * linux graphics adapters? Michael Galloway (Thu Jul 13 2000 - 06:57:25 CDT) * Re: linux graphics adapters? Guy Coates (Thu Jul 13 2000 - 07:05:42 CDT) * Re: linux graphics adapters? John Stone (Thu Jul 13 2000 - 10:10:48 CDT) * Re: linux graphics adapters? Michael Galloway (Thu Jul 13 2000 - 12:36:28 CDT) * Re: linux graphics adapters? John Stone (Thu Jul 13 2000 - 12:50:58 CDT) * Re: linux graphics adapters? David E. Jones (Thu Jul 13 2000 - 14:43:06 CDT) * Spheres with OpenGL (was Re: linux graphics adapters?) Tim Freeman (Sun Jul 16 2000 - 12:05:02 CDT) * Erro compiling vmd and or fltk mark knapp (Sun Jul 16 2000 - 13:37:04 CDT) * Re: Spheres with OpenGL (was Re: linux graphics adapters?) John Stone (Sun Jul 16 2000 - 14:06:08 CDT) * Re: Erro compiling vmd and or fltk John Stone (Sun Jul 16 2000 - 14:12:10 CDT) * Re: Spheres with OpenGL (was Re: linux graphics adapters?) Andrew Dalke (Sun Jul 16 2000 - 20:54:55 CDT) * Re: OpenGL, rendering spheres Tim Freeman (Thu Jul 20 2000 - 07:40:33 CDT) * PDB file output B. Bennion (Tue Jul 25 2000 - 11:59:40 CDT) * Re: PDB file output Sergei Izrailev (Tue Jul 25 2000 - 12:26:18 CDT) * Re: PDB file output Justin Gullingsrud (Tue Jul 25 2000 - 12:22:38 CDT) * loading molecule from command line Mauricio Carrillo Tripp (Fri Jul 28 2000 - 14:42:56 CDT) * Re: loading molecule from command line John Stone (Fri Jul 28 2000 - 15:11:02 CDT) * RMSD calculation/fit doesn't work? Timm Essigke (Thu Aug 03 2000 - 13:17:18 CDT) * Bond information Timm Essigke (Fri Aug 04 2000 - 11:09:44 CDT) * Re: Bond information Justin Gullingsrud (Fri Aug 04 2000 - 12:11:21 CDT) * Re: RMSD calculation/fit doesn't work? John Stone (Mon Aug 14 2000 - 18:58:34 CDT) * Re: RMSD calculation/fit doesn't work? Timm Essigke (Tue Aug 15 2000 - 07:47:51 CDT) * vmd on redhat6.2 and elsa gladiac Kim Branson (Tue Aug 15 2000 - 21:32:06 CDT) * Re: vmd on redhat6.2 and elsa gladiac John Stone (Tue Aug 15 2000 - 22:11:05 CDT) * incorrect tube, trace and ribbon drawings Lars Burgdorf (Mon Aug 21 2000 - 08:15:42 CDT) * Re: incorrect tube, trace and ribbon drawings Justin Gullingsrud (Mon Aug 21 2000 - 13:32:52 CDT) * Announce: VMD 1.6a1 is available John Stone (Thu Aug 24 2000 - 18:43:53 CDT) * Re: Announce: VMD 1.6a1 is available Kim Branson (Sun Aug 27 2000 - 23:13:24 CDT) * animation spezia@caspur.it (Tue Aug 29 2000 - 09:26:07 CDT) * hbond calculations B. Bennion (Tue Aug 29 2000 - 10:49:16 CDT) * Re: hbond calculations Justin Gullingsrud (Tue Aug 29 2000 - 14:18:45 CDT) * Re: animation John Stone (Wed Aug 30 2000 - 11:06:03 CDT) * Re: animation B. Bennion (Wed Aug 30 2000 - 11:47:25 CDT) * Re: animation John Stone (Wed Aug 30 2000 - 13:00:24 CDT) * Re: animation Simon Hogg (Wed Aug 30 2000 - 19:13:17 CDT) * removing unwanted residues B. Bennion (Thu Aug 31 2000 - 11:57:00 CDT) * Re: removing unwanted residues Justin Gullingsrud (Thu Aug 31 2000 - 12:03:21 CDT) * NAMD 2.2b1 Release Announcement Jim Phillips (Tue Sep 05 2000 - 17:39:24 CDT) * Inspired Internet Business Opportunity! jo333_4@lawrence-lca.co.uk (Wed Sep 06 2000 - 13:38:24 CDT) * viewing CHARMM trajectory Surjit Dixit (Mon Sep 11 2000 - 13:54:16 CDT) * nvidia woes. Kim Branson (Mon Sep 11 2000 - 21:10:28 CDT) * Re: viewing CHARMM trajectory Ernesto Moreno (Tue Sep 12 2000 - 09:37:47 CDT) * Re: nvidia woes. John Stone (Tue Sep 12 2000 - 11:04:08 CDT) * File Selector in VMD1.6a1 Surjit Dixit (Wed Sep 13 2000 - 12:03:45 CDT) * Re: viewing CHARMM trajectory John Stone (Wed Sep 13 2000 - 22:30:44 CDT) * Re: viewing CHARMM trajectory John Stone (Wed Sep 13 2000 - 22:33:09 CDT) * Re: File Selector in VMD1.6a1 John Stone (Wed Sep 13 2000 - 23:15:21 CDT) * Announce: VMD 1.6a2 is available John Stone (Thu Sep 14 2000 - 02:38:08 CDT) * msms 2.5 and vmd? Robert Milius (Thu Sep 14 2000 - 13:09:41 CDT) * Re: msms 2.5 and vmd? John Stone (Thu Sep 14 2000 - 13:25:48 CDT) * parallel rendering across clusters? John Duff (Fri Sep 15 2000 - 16:16:16 CDT) * Re: parallel rendering across clusters? John Stone (Fri Sep 15 2000 - 18:18:53 CDT) * Building VMD under Windows 2000 Laurence F. Wood (Sun Sep 17 2000 - 19:42:28 CDT) * Re: Building VMD under Windows 2000 John Stone (Mon Sep 18 2000 - 09:53:51 CDT) * a few questions about VMD Eric Hu (Wed Sep 20 2000 - 17:49:07 CDT) * Re: a few questions about VMD John Stone (Wed Sep 20 2000 - 19:55:26 CDT) * Re: a few questions about VMD Eric Hu (Fri Sep 22 2000 - 16:31:06 CDT) * Re: a few questions about VMD John Stone (Fri Sep 22 2000 - 16:34:17 CDT) * several questions, Bettler Emmanuel (Tue Sep 26 2000 - 07:01:11 CDT) * NAMD 2.2 Release Announcement Jim Phillips (Fri Sep 29 2000 - 18:32:22 CDT) * Using VMD to edit dynamics output David Chalmers (Sun Oct 01 2000 - 22:47:14 CDT) * Re: Using VMD to edit dynamics output Justin Gullingsrud (Mon Oct 02 2000 - 00:22:25 CDT) * Re: Using VMD to edit dynamics output Barry Isralewitz (Mon Oct 02 2000 - 01:07:39 CDT) * Re: several questions, John Stone (Thu Oct 05 2000 - 16:43:57 CDT) * MSMS 2.5.3 is available for VMD users!! John Stone (Fri Oct 06 2000 - 09:25:38 CDT) * Announce: VMD 1.6a3 is available John Stone (Fri Oct 06 2000 - 14:37:27 CDT) * problem compiling on redhat 7.0 John Duff (Sat Oct 07 2000 - 00:57:48 CDT) * Re: problem compiling on redhat 7.0 Justin Gullingsrud (Sat Oct 07 2000 - 11:03:30 CDT) * Re: problem compiling on redhat 7.0 John Duff (Sun Oct 08 2000 - 14:52:46 CDT) * Re: problem compiling on redhat 7.0 John Stone (Sun Oct 08 2000 - 22:49:58 CDT) * Ca-dist script Troy Wymore (Thu Oct 12 2000 - 13:36:59 CDT) * Re: Ca-dist script Justin Gullingsrud (Fri Oct 13 2000 - 13:29:23 CDT) * VMD Script Library pages updated... John Stone (Fri Oct 13 2000 - 14:39:38 CDT) * Selection Deepak Singh (Tue Oct 17 2000 - 11:08:51 CDT) * Re: Selection Sergei Izrailev (Tue Oct 17 2000 - 11:28:18 CDT) * Re: Selection Deepak Singh (Tue Oct 17 2000 - 11:31:12 CDT) * Re: Selection John Stone (Tue Oct 17 2000 - 11:42:30 CDT) * Re: Selection Deepak Singh (Tue Oct 17 2000 - 11:51:33 CDT) * Re: CCL:program for viewing MD Barry Isralewitz (Mon Oct 23 2000 - 11:55:02 CDT) * vmd stereo Brendan O'Malley (Sun Oct 29 2000 - 19:27:16 CST) * Re: vmd stereo John Stone (Mon Oct 30 2000 - 01:04:12 CST) * 2000 VMD Survey Report is up John Stone (Mon Nov 13 2000 - 18:08:44 CST) * Using VMD on Redhat 7.0 John Stone (Wed Nov 15 2000 - 11:29:07 CST) * rending softwares for win98 Eric Hu (Thu Nov 16 2000 - 17:26:20 CST) * Re: rending softwares for win98 John Stone (Fri Nov 17 2000 - 01:42:17 CST) * Announce: VMD 1.6a4 is available John Stone (Tue Nov 21 2000 - 00:19:42 CST) * Announcing MDSalon! Jim Phillips (Tue Nov 21 2000 - 15:15:21 CST) * Measuring cluster size Madhavan Poyyapakkam (Wed Nov 22 2000 - 20:46:59 CST) * VMD 1.6a4 core dumps. Kim Branson (Thu Nov 23 2000 - 19:35:00 CST) * Re: VMD 1.6a4 core dumps. John Stone (Thu Nov 23 2000 - 19:45:08 CST) * Re: VMD 1.6a4 core dumps. Kim Branson (Thu Nov 23 2000 - 21:45:20 CST) * VMD stereo (Win/SGI) and graphics accelerators... John Stone (Wed Nov 29 2000 - 11:29:57 CST) * Announce: MDTools update John Stone (Thu Nov 30 2000 - 14:51:44 CST) * VMD + MSMS + WinNT ee@post.harvard.edu (Thu Nov 30 2000 - 15:27:31 CST) * Re: VMD + MSMS + WinNT John Stone (Thu Nov 30 2000 - 21:20:53 CST) * making a movie with a serie of pdb's Aitor Gonzalez (Thu Dec 07 2000 - 06:51:07 CST) * Re: making a movie with a serie of pdb's John Stone (Thu Dec 07 2000 - 09:51:36 CST) * Re: making a movie with a serie of pdb's Aitor Gonzalez (Fri Dec 08 2000 - 05:26:00 CST) * files Zachariah Sinkala (Fri Dec 08 2000 - 11:50:31 CST) * Re: files John Stone (Fri Dec 08 2000 - 12:40:43 CST) * Re: files Lars Burgdorf (Fri Dec 08 2000 - 13:57:33 CST) * VMD Python binaries available for testing Justin Gullingsrud (Fri Dec 08 2000 - 14:08:55 CST) * update sec. structure in animation, sscache Raik Gruenberg (Mon Dec 11 2000 - 10:40:13 CST) * povray images allways perspective? Siegmar Kardinal (Thu Dec 14 2000 - 10:43:39 CST) * Re: povray images allways perspective? John Stone (Thu Dec 14 2000 - 10:51:17 CST) * Re: povray images allways perspective? Barry Isralewitz (Thu Dec 14 2000 - 11:02:29 CST) * Q: MO visualisation Christoph Hagedorn (Thu Dec 14 2000 - 11:35:39 CST) * Re: povray images allways perspective? Lothar Esser (Thu Dec 14 2000 - 11:57:57 CST) * Re: povray images allways perspective? John Stone (Thu Dec 14 2000 - 12:45:27 CST) * Announce: VMD 1.6 Released John Stone (Fri Dec 22 2000 - 17:17:04 CST) * Announce: ZoomSeq -- sequence browser for VMD Barry Isralewitz (Thu Dec 28 2000 - 14:54:20 CST) * Announce: Structural Biology Software Database John Stone (Thu Jan 04 2001 - 14:04:34 CST) * vmd, linux & dri Robert Milius (Fri Jan 12 2001 - 16:41:52 CST) * Re: vmd, linux & dri John Stone (Fri Jan 12 2001 - 17:44:29 CST) * Re: vmd, linux & dri (fwd) Bob Milius (Fri Jan 12 2001 - 19:29:20 CST) * Re: vmd, linux & dri (fwd) Bob Milius (Fri Jan 12 2001 - 19:39:34 CST) * Re: vmd, linux & dri (fwd) Justin Gullingsrud (Fri Jan 12 2001 - 20:57:12 CST) * a question cojocaru vlad (Mon Feb 05 2001 - 10:24:40 CST) * Re: a question John Stone (Tue Feb 06 2001 - 09:55:21 CST) * Re:vmd, linux & dri Angelo R. Rossi (Tue Feb 13 2001 - 08:20:42 CST) * Re: vmd, linux & dri John Stone (Tue Feb 13 2001 - 10:06:46 CST) * TkCon, an alternative VMD console... John Stone (Mon Feb 19 2001 - 15:07:16 CST) * Stereoscopic rendering on Linux Timm Essigke (Wed Feb 21 2001 - 10:41:56 CST) * Re: Stereoscopic rendering on Linux John Stone (Wed Feb 21 2001 - 11:00:57 CST) * Announce: VMD Users Image Gallery John Stone (Thu Feb 22 2001 - 13:43:31 CST) * NAMD 2.3b1 Release Jim Phillips (Fri Feb 23 2001 - 11:01:55 CST) * How can I change the wireframe look Jeff Taylor (Thu Mar 01 2001 - 14:12:50 CST) * Re: How can I change the wireframe look John Stone (Thu Mar 01 2001 - 14:21:30 CST) * Announce: VMD 1.6.1a2 is available John Stone (Mon Mar 05 2001 - 15:17:19 CST) * Bug in VMD-1.6 (linux, GL) Timm Essigke (Mon Mar 05 2001 - 16:21:53 CST) * caculate the RMSD of 10 DNA Kuen Phon Wu (Wed Mar 07 2001 - 22:50:24 CST) * Re: caculate the RMSD of 10 DNA Justin Gullingsrud (Wed Mar 07 2001 - 23:16:30 CST) * Molecule rotation B. Bennion (Thu Mar 08 2001 - 12:16:46 CST) * Re: Molecule rotation Justin Gullingsrud (Thu Mar 08 2001 - 12:32:15 CST) * Re: Molecule rotation Charles.Schwieters@nih.gov (Thu Mar 08 2001 - 12:54:04 CST) * Re: Bug in VMD-1.6 (linux, GL) John Stone (Fri Mar 09 2001 - 00:25:26 CST) * switching off the location axes Aitor Gonzalez (Fri Mar 09 2001 - 02:48:53 CST) * Re: switching off the location axes John Stone (Fri Mar 09 2001 - 02:51:46 CST) * Re: switching off the location axes Aitor Gonzalez (Fri Mar 09 2001 - 03:10:03 CST) * Re: switching off the location axes Jim Phillips (Fri Mar 09 2001 - 09:39:39 CST) * Announce: VMD 1.6.1a3 is available John Stone (Mon Mar 12 2001 - 17:46:34 CST) * python loop Aitor Gonzalez (Fri Mar 16 2001 - 04:40:38 CST) * Re: python loop Justin Gullingsrud (Fri Mar 16 2001 - 12:23:18 CST) * Re: python loop Aitor Gonzalez (Fri Mar 16 2001 - 12:39:34 CST) * group selection Yunfeng Hu (Mon Mar 19 2001 - 21:33:01 CST) * rasmol script Yunfeng Hu (Tue Mar 20 2001 - 19:36:24 CST) * Re: rasmol script Andrew Dalke (Tue Mar 20 2001 - 22:45:49 CST) * Scripts to color amino acids based on given properties Y Xu (Wed Mar 21 2001 - 08:22:31 CST) * Re: group selection Justin Gullingsrud (Thu Mar 22 2001 - 12:32:23 CST) * Re: group selection Justin Gullingsrud (Fri Mar 23 2001 - 09:38:46 CST) * NVidia OpenGL HOWTO for Linux users... John Stone (Tue Mar 27 2001 - 01:01:37 CST) * python vmd interface Aitor Gonzalez (Thu Mar 29 2001 - 08:57:32 CST) * Re: python vmd interface Justin Gullingsrud (Thu Mar 29 2001 - 11:53:11 CST) * ANN: BioCoRE now includes remote job submission biocore@ks.uiuc.edu (Fri Mar 30 2001 - 13:26:32 CST) * animation and reps B. Bennion (Sat Mar 31 2001 - 01:40:43 CST) * Re: animation and reps John Stone (Sat Mar 31 2001 - 11:02:23 CST) * Re: animation and reps Justin Gullingsrud (Wed Apr 04 2001 - 14:15:19 CDT) * Re: animation and reps Aitor Gonzalez (Mon Apr 09 2001 - 08:17:52 CDT) * New Release: Planetsweep Revolutionizes Internet Browsing cyclone@team.planetsweep.com (Mon Apr 09 2001 - 13:13:23 CDT) * Card for VMD with OpenGL & Linux Dominik Horinek (Mon Apr 09 2001 - 16:38:40 CDT) * Re: Card for VMD with OpenGL & Linux John Stone (Mon Apr 09 2001 - 16:46:34 CDT) * Re: Card for VMD with OpenGL & Linux Dominik Horinek (Mon Apr 09 2001 - 17:09:45 CDT) * Re: Card for VMD with OpenGL & Linux John Stone (Wed Apr 11 2001 - 01:31:59 CDT) * need help - hardware stereo on a Windows PC Kristian Mueller (Thu Apr 12 2001 - 11:41:36 CDT) * Re: need help - hardware stereo on a Windows PC John Stone (Fri Apr 13 2001 - 00:21:10 CDT) * TIS SARL promotions AVRIL N°1 TIS SARL (Fri Apr 13 2001 - 01:09:39 CDT) * Some newbie questions Arent, Michael (Fri Apr 20 2001 - 08:44:27 CDT) * Re: Some newbie questions B. Bennion (Fri Apr 20 2001 - 10:40:20 CDT) * Sorry! Forgot to include the name of the molecule M. Arent (Sun Apr 22 2001 - 15:32:22 CDT) * Re: Sorry! Forgot to include the name of the molecule Justin Gullingsrud (Sun Apr 22 2001 - 15:44:57 CDT) * Re: Some newbie questions John Stone (Sun Apr 22 2001 - 16:17:35 CDT) * Re: Sorry! Forgot to include the name of the molecule Sergei Izrailev (Mon Apr 23 2001 - 13:23:21 CDT) * Announce: VMD 1.6.1 Released! John Stone (Tue Apr 24 2001 - 10:03:39 CDT) * bond length definition Mauricio Carrillo Tripp (Tue Apr 24 2001 - 13:40:17 CDT) * Re: bond length definition Aitor Gonzalez (Wed Apr 25 2001 - 04:41:32 CDT) * Re: bond length definition John Stone (Wed Apr 25 2001 - 13:39:35 CDT) * 1.6.1 hotkey problem Ben Cornett (Wed May 02 2001 - 13:05:47 CDT) * Re: 1.6.1 hotkey problem Justin Gullingsrud (Wed May 02 2001 - 15:18:40 CDT) * VMD 1.6.1 IRIX6_64 startup script fix John Stone (Thu May 03 2001 - 11:16:05 CDT) * Surface slices Timm Essigke (Tue May 08 2001 - 07:44:28 CDT) * free sample!!! your1word@yahoo.com (Wed May 09 2001 - 07:18:35 CDT) * Re: free sample!!! Ali Deyhim (Wed May 09 2001 - 10:35:13 CDT) * hyperchem files Mauricio Carrillo Tripp (Thu May 10 2001 - 10:22:44 CDT) * RE: hyperchem files Laurence F. Wood (Thu May 10 2001 - 14:11:24 CDT) * Re: Surface slices John Stone (Fri May 11 2001 - 13:08:34 CDT) * Coloring Sections of Peptides B. Bennion (Wed May 16 2001 - 15:26:01 CDT) * Re: Coloring Sections of Peptides Justin Gullingsrud (Wed May 16 2001 - 15:58:26 CDT) * Can a script change the projection? Jeff Taylor (Mon Jun 04 2001 - 15:04:53 CDT) * follow up Jeff Taylor (Mon Jun 04 2001 - 15:30:35 CDT) * Re: follow up John Stone (Mon Jun 04 2001 - 15:47:29 CDT) * Coloring mols by carbon only Niklas.Blomberg@astrazeneca.com (Mon Jul 09 2001 - 04:09:32 CDT) * Re: Coloring mols by carbon only John Stone (Mon Jul 09 2001 - 10:53:28 CDT) * Announce: VMD 1.7b1 is available! John Stone (Tue Jul 10 2001 - 18:15:45 CDT) * (forwarded) Modifying a Tcl script John Stone (Fri Jul 20 2001 - 10:17:04 CDT) * (forwarded) cylinder drawing bug in 1.7b1 on NT? John Stone (Fri Jul 20 2001 - 10:20:06 CDT) * Dialboxes Craig Morton (Sun Jul 22 2001 - 21:36:49 CDT) * Re: Dialboxes John Stone (Sun Jul 22 2001 - 23:58:19 CDT) * 3 simple questions from a newbie Alexey Kozlenkov (Mon Jul 23 2001 - 07:01:43 CDT) * (fwd) vmd 1.7b1 sequence window disappeares John Stone (Mon Jul 23 2001 - 09:59:20 CDT) * (fwd) Re: Dialboxes John Stone (Mon Jul 23 2001 - 10:00:55 CDT) * Re: 3 simple questions from a newbie Justin Gullingsrud (Mon Jul 23 2001 - 12:34:16 CDT) * Announce: VMD 1.7b2 is available! John Stone (Wed Jul 25 2001 - 10:12:11 CDT) * fixing a molecule Mauricio Carrillo-Tripp (Mon Jul 30 2001 - 17:08:39 CDT) * Re: fixing a molecule John Stone (Mon Jul 30 2001 - 20:40:28 CDT) * Re: fixing a molecule Jeff Taylor (Tue Jul 31 2001 - 10:19:39 CDT) * Re: fixing a molecule Barry Isralewitz (Wed Aug 01 2001 - 17:40:06 CDT) * Announce: VMD 1.7 Released!! John Stone (Thu Aug 02 2001 - 14:26:09 CDT) * NAMD 2.3 Release Announcement Jim Phillips (Thu Aug 02 2001 - 14:36:22 CDT) * raster3d Yunfeng Hu (Thu Aug 02 2001 - 19:11:28 CDT) * Re: raster3d John Stone (Thu Aug 02 2001 - 19:13:49 CDT) * Work around and problem with 1.7 for MacOS X Tyler Heibeck (Mon Aug 06 2001 - 15:17:57 CDT) * Re: Work around and problem with 1.7 for MacOS X John Stone (Tue Aug 07 2001 - 21:35:41 CDT) * VMD 1.7 AIX and MacOS X distributions updated... John Stone (Wed Aug 08 2001 - 00:57:16 CDT) * Re: Work around and problem with 1.7 for MacOS X Tyler Heibeck (Wed Aug 08 2001 - 11:30:20 CDT) * problem with RMSD script Elizabeth K. White (Wed Aug 15 2001 - 15:03:11 CDT) * Re: problem with RMSD script John Stone (Fri Aug 17 2001 - 14:00:10 CDT) * Re: problem with RMSD script Justin Gullingsrud (Sun Aug 19 2001 - 18:48:02 CDT) * Making movies of trajectories Troy Wymore (Thu Aug 23 2001 - 13:14:34 CDT) * diplaying multiple frames from DCD file diane lynch (Fri Aug 24 2001 - 15:11:20 CDT) * Programming problem (making bonds) Dr. Paul Fons (Sat Aug 25 2001 - 19:51:09 CDT) * memory problems Dr. Paul Fons (Sat Aug 25 2001 - 19:54:48 CDT) * Re: memory problems Justin Gullingsrud (Sat Aug 25 2001 - 21:51:25 CDT) * Re: Making movies of trajectories John Stone (Thu Aug 30 2001 - 21:49:52 CDT) * VMD 1.7.1 pre-alpha, volume visualization, new stereo modes, etc. John Stone (Thu Aug 30 2001 - 23:29:56 CDT) * new user animation question tom keyes (Wed Oct 03 2001 - 16:37:49 CDT) * SMP, coord transform, cpu usage Robert Matthew Fesinmeyer (Wed Oct 03 2001 - 17:42:01 CDT) * Re: new user animation question B. Bennion (Thu Oct 04 2001 - 00:47:08 CDT) * Re: new user animation question tom keyes (Thu Oct 04 2001 - 09:44:41 CDT) * Re: new user animation question B. Bennion (Thu Oct 04 2001 - 10:37:32 CDT) * Re: new user animation question tom keyes (Thu Oct 04 2001 - 13:01:01 CDT) * movie under Windows Nikolai Smolin (Fri Oct 05 2001 - 04:07:00 CDT) * Re: new user animation question John Stone (Fri Oct 05 2001 - 12:49:10 CDT) * Re: SMP, coord transform, cpu usage John Stone (Fri Oct 05 2001 - 14:40:30 CDT) * Re: movie under Windows John Stone (Fri Oct 05 2001 - 16:40:32 CDT) * Re: SMP, coord transform, cpu usage R. M. Fesinmeyer (Sat Oct 06 2001 - 22:57:14 CDT) * more animation Tom Keyes (Sun Oct 07 2001 - 17:17:23 CDT) * Re: SMP, coord transform, cpu usage John Stone (Mon Oct 08 2001 - 10:11:18 CDT) * Re: new user animation question Mauricio Carrillo Tripp (Tue Oct 09 2001 - 20:01:20 CDT) * Superimposing two frames Sanjeev B.S. (Mon Oct 22 2001 - 01:54:50 CDT) * Re: Superimposing two frames John Stone (Mon Oct 22 2001 - 10:41:36 CDT) * Re: Superimposing two frames Sanjeev B.S. (Mon Oct 22 2001 - 13:05:20 CDT) * VMD freezes KDE under Linux Redhat 7.1 Raik Grunberg (Wed Oct 24 2001 - 07:22:06 CDT) * RE: VMD freezes KDE under Linux Redhat 7.1 Laurence Wood (Wed Oct 24 2001 - 15:25:30 CDT) * Re: VMD freezes KDE under Linux Redhat 7.1 Stephane (Thu Oct 25 2001 - 09:16:30 CDT) * Making UIobjects B. Bennion (Thu Oct 25 2001 - 11:13:27 CDT) * Re: Making UIobjects Justin Gullingsrud (Thu Oct 25 2001 - 11:46:02 CDT) * Announce: JMV version 0.7 is available! John Stone (Tue Oct 30 2001 - 16:15:33 CST) * Re: Superimposing two frames Andrew Dalke (Tue Oct 30 2001 - 16:12:03 CST) * more animating trajectories tom keyes (Wed Oct 31 2001 - 17:24:04 CST) * Re: more animating trajectories John Stone (Thu Nov 01 2001 - 13:13:47 CST) * Re: Announce: JMV version 0.7 is available! John Stone (Fri Nov 02 2001 - 15:30:28 CST) * Re: more animating trajectories tom keyes (Sun Nov 04 2001 - 09:02:35 CST) * Re: more animating trajectories John Stone (Sun Nov 04 2001 - 11:02:59 CST) * Re: more animating trajectories Raik Grunberg (Mon Nov 05 2001 - 14:46:15 CST) * dementi: VMD freezes KDE under Linux Redhat = nVidia problem Raik Grunberg (Mon Nov 05 2001 - 15:04:19 CST) * Re: more animating trajectories Justin Gullingsrud (Thu Nov 08 2001 - 10:59:52 CST) * Re: making a movie of trajectory file animation Barry Isralewitz (Thu Nov 08 2001 - 15:51:55 CST) * Waiting for files to load in VMD Justin Gullingsrud (Fri Nov 09 2001 - 11:14:28 CST) * VMD Spaceball and Magellan/SpaceMouse support for Windows... John Stone (Tue Nov 20 2001 - 15:02:06 CST) * compiling problems B. Bennion (Mon Nov 26 2001 - 11:35:50 CST) * opengl libraries B. Bennion (Mon Nov 26 2001 - 12:23:49 CST) * Re: opengl libraries John Stone (Mon Nov 26 2001 - 12:32:53 CST) * Re: compiling problems Justin Gullingsrud (Mon Nov 26 2001 - 13:24:55 CST) * Re: opengl libraries John Stone (Tue Nov 27 2001 - 15:04:55 CST) * Re: opengl libraries B. Bennion (Tue Nov 27 2001 - 15:18:45 CST) * Display problem Stéphane (Wed Nov 28 2001 - 05:52:41 CST) * save config & RMSD not functioning nepenthes@vplaces.net (Thu Nov 29 2001 - 01:28:10 CST) * Re: save config & RMSD not functioning John Stone (Thu Nov 29 2001 - 11:26:24 CST) * (no subject) César Filipe Barbosa Ribeiro (Sun Dec 02 2001 - 13:50:44 CST) * 'wrap' any kind of solvent Reuter Nathalie (Mon Dec 03 2001 - 03:20:45 CST) * Re: 'wrap' any kind of solvent Jim Phillips (Mon Dec 03 2001 - 11:14:50 CST) * Re: your mail John Stone (Tue Dec 04 2001 - 01:55:14 CST) * Re: Display problem John Stone (Tue Dec 04 2001 - 09:44:20 CST) * Re: Display problem Stéphane (Tue Dec 04 2001 - 10:26:23 CST) * crystallographic symmetry tool Daniel Barsky (Wed Dec 05 2001 - 19:11:35 CST) * Announce: VMD 1.7.1b1 test version is available... John Stone (Wed Dec 05 2001 - 21:14:37 CST) * Announce: Struc. Bio. Software DB updates John Stone (Thu Dec 06 2001 - 11:21:57 CST) * secondary structure Nikolai Smolin (Tue Dec 11 2001 - 07:45:20 CST) * Re: secondary structure Barry Isralewitz (Tue Dec 11 2001 - 11:46:33 CST) * NAMD problem (ReceiveDatagram: recv: Resource temporarily unavailable:) Reuter Nathalie (Wed Dec 12 2001 - 11:20:53 CST) * rotating two superposed molecules Marcela Madrid (Sun Dec 16 2001 - 14:44:44 CST) * Re: rotating two superposed molecules Justin Gullingsrud (Sun Dec 16 2001 - 16:36:58 CST) * 3D visualization Stephen Koch (Thu Dec 20 2001 - 13:39:17 CST) * Re: 3D visualization John Stone (Thu Dec 20 2001 - 14:09:12 CST) * Re: 3D visualization John Stone (Thu Dec 20 2001 - 14:16:33 CST) * Pictures Sanjeev B.S. (Fri Dec 21 2001 - 10:55:12 CST) * Re: Pictures John Stone (Fri Dec 21 2001 - 11:08:48 CST) * Re: Announce: VMD 1.7.1b1 test version is available... John Stone (Sat Dec 22 2001 - 21:56:00 CST) * Announce: VMD 1.7.1 released! John Stone (Sun Dec 23 2001 - 22:53:26 CST) * OpenGL cards for workstations Justin Gullingsrud (Fri Jan 04 2002 - 17:05:36 CST) * High-end PC graphics boards for VMD... John Stone (Fri Jan 04 2002 - 17:23:23 CST) * 2 questions Sanjeev B.S. (Mon Jan 07 2002 - 02:43:18 CST) * Re: 2 questions Justin Gullingsrud (Wed Jan 09 2002 - 11:23:07 CST) * immersadesk Adrian E. Roitberg (Tue Apr 16 2002 - 09:06:25 CDT) * Test release of VMD movie maker John Stone (Wed Jan 16 2002 - 11:38:14 CST) * cavetracker Derek R. Ploor (Wed Jan 16 2002 - 15:00:31 CST) * Re: immersadesk John Stone (Fri Jan 18 2002 - 01:27:40 CST) * Re: cavetracker John Stone (Fri Jan 18 2002 - 01:32:48 CST) * Re: up arrow for previous commands John Stone (Fri Jan 18 2002 - 11:03:39 CST) * Re: up arrow for previous commands (with the command attached) Paul Grayson (Fri Jan 18 2002 - 13:42:54 CST) * Re: up arrow for previous commands (with the command attached) Justin Gullingsrud (Sat Jan 19 2002 - 01:46:17 CST) * Stereo in linux/oxygen gvx1/xig driver Boaz Shaanan (Sat Jan 19 2002 - 06:35:50 CST) * display panel only showed 1/4 of its area on the screen. Margaret Cheung (Sun Jan 20 2002 - 12:45:26 CST) * Re: display panel only showed 1/4 of its area on the screen. John Stone (Sun Jan 20 2002 - 13:25:32 CST) * Re: display panel only showed 1/4 of its area on the screen. Jim Phillips (Sun Jan 20 2002 - 13:59:26 CST) * Re: display panel only showed 1/4 of its area on the screen. Margaret Cheung (Mon Jan 21 2002 - 01:40:58 CST) * vmd-1.7.1 installation problems Wuwei Liang (Wed Jan 23 2002 - 12:41:52 CST) * Re: vmd-1.7.1 installation problems John Stone (Wed Jan 23 2002 - 09:47:04 CST) * Re: Stereo in linux/oxygen gvx1/xig driver John Stone (Wed Jan 23 2002 - 19:49:00 CST) * Re: Stereo in linux/oxygen gvx1/xig driver Boaz Shaanan (Thu Jan 24 2002 - 03:30:25 CST) * Volumetric Data Formats for VMD Reinhard Klement (Thu Jan 24 2002 - 09:02:33 CST) * Re: Volumetric Data Formats for VMD John Stone (Thu Jan 24 2002 - 09:51:44 CST) * vmdmovie Stéphane Teletchéa (Thu Jan 24 2002 - 11:47:23 CST) * Re: vmdmovie John Stone (Thu Jan 24 2002 - 12:41:36 CST) * Re: Stereo in linux/oxygen gvx1/xig driver John Stone (Thu Jan 24 2002 - 12:53:41 CST) * Re: seeing ions John Stone (Thu Jan 24 2002 - 13:23:46 CST) * Drawing electron density surfaces (from cube files) Francesco Gervasio (Fri Jan 25 2002 - 07:01:41 CST) * bond length Vlad Cojocaru (Mon Jan 28 2002 - 05:26:27 CST) * Re: bond length Justin Gullingsrud (Mon Jan 28 2002 - 11:32:36 CST) * NAMD 2.4b1 released Jim Phillips (Mon Jan 28 2002 - 16:44:30 CST) * python disabled Alexey Kozlenkov (Wed Jan 30 2002 - 14:53:54 CST) * Re: python disabled Justin Gullingsrud (Wed Jan 30 2002 - 14:51:03 CST) * Re: Drawing electron density surfaces (from cube files) John Stone (Thu Jan 31 2002 - 15:36:29 CST) * Main window off top of screen Keith Oxenrider (Fri Feb 01 2002 - 10:57:58 CST) * Re: Main window off top of screen John Stone (Fri Feb 01 2002 - 11:02:17 CST) * VMD/Eye3d/Linux/Nvidia question Troy Wymore (Fri Feb 01 2002 - 15:58:56 CST) * Re: VMD/Eye3d/Linux/Nvidia question John Stone (Fri Feb 01 2002 - 16:23:25 CST) * van der Waals volume Markus Laub (Mon Feb 04 2002 - 12:49:02 CST) * Nothing happens with Window's install Keith Oxenrider (Tue Feb 05 2002 - 11:25:23 CST) * Re: Nothing happens with Window's install John Stone (Tue Feb 05 2002 - 11:33:43 CST) * Re: Nothing happens with Window's install John Stone (Tue Feb 05 2002 - 12:50:45 CST) * NVidia GeForce issues on PCs (article URL) John Stone (Tue Feb 05 2002 - 14:25:30 CST) * Re: van der Waals volume John Stone (Tue Feb 05 2002 - 19:29:42 CST) * Python: radius always 1 for cylinder and cones Fredrik Sjunnesson (Wed Feb 06 2002 - 16:04:13 CST) * Re: Python: radius always 1 for cylinder and cones Justin Gullingsrud (Wed Feb 06 2002 - 17:03:55 CST) * Announce: VMD 1.7.2 (Windows-only GUI update) is available John Stone (Wed Feb 06 2002 - 19:07:55 CST) * Radial distribution function script (fwd) John Stone (Thu Feb 07 2002 - 21:29:50 CST) * python script of atomsel expression Fei Xu (Tue Feb 19 2002 - 09:42:25 CST) * Re: python script of atomsel expression Justin Gullingsrud (Tue Feb 19 2002 - 10:47:58 CST) * VMD CVS and build procedure changes... John Stone (Tue Feb 19 2002 - 18:15:06 CST) * Re: animated colors, trajectories, etc.. John Stone (Tue Feb 19 2002 - 18:41:02 CST) * Loading new molecules into VMD from an application jen ramus (Wed Feb 20 2002 - 17:25:44 CST) * Re: Loading new molecules into VMD from an application Paul Grayson (Wed Feb 20 2002 - 19:59:54 CST) * Re: Loading new molecules into VMD from an application John Stone (Wed Feb 20 2002 - 20:48:56 CST) * Using Python Sam Ansari (Fri Feb 22 2002 - 07:59:02 CST) * AtomSel and Graphics Fei Xu (Fri Feb 22 2002 - 11:26:51 CST) * NAMD 2.4b2 Release Announcement Jim Phillips (Fri Feb 22 2002 - 12:56:35 CST) * Re: Using Python John Stone (Fri Feb 22 2002 - 12:59:19 CST) * VMD: EDM and Gaussian "Cube" reader scripts available John Stone (Fri Feb 22 2002 - 15:25:18 CST) * Re: AtomSel and Graphics John Stone (Fri Feb 22 2002 - 16:07:07 CST) * Re: AtomSel and Graphics Justin Gullingsrud (Sat Feb 23 2002 - 16:53:21 CST) * Plotting elect. pot. surface Alan Wilter Sousa da Silva (Mon Feb 25 2002 - 12:15:52 CST) * Re: Plotting elect. pot. surface John Stone (Mon Feb 25 2002 - 11:27:53 CST) * Re: Plotting elect. pot. surface Alan Wilter Sousa da Silva (Mon Feb 25 2002 - 14:40:57 CST) * Re: Plotting elect. pot. surface John Stone (Mon Feb 25 2002 - 13:17:44 CST) * Re: Plotting elect. pot. surface John Stone (Mon Feb 25 2002 - 13:25:22 CST) * RE: Plotting elect. pot. surface Laurence F. Wood (Mon Feb 25 2002 - 17:20:34 CST) * Re: Plotting elect. pot. surface John Stone (Mon Feb 25 2002 - 17:26:28 CST) * Re: Plotting elect. pot. surface Alan Wilter Sousa da Silva (Tue Feb 26 2002 - 14:16:22 CST) * Upcoming NAMD Workshop Jim Phillips (Tue Feb 26 2002 - 15:24:32 CST) * Re: Plotting elect. pot. surface John Stone (Wed Feb 27 2002 - 01:34:49 CST) * Access to Python libraries from Mandrake8.1 jen ramus (Wed Feb 27 2002 - 19:08:08 CST) * Removing perspective projection at startup Stéphane Teletchéa (Thu Feb 28 2002 - 07:11:37 CST) * Re: Removing perspective projection at startup John Stone (Thu Feb 28 2002 - 09:41:57 CST) * Re: Access to Python libraries from Mandrake8.1 John Stone (Thu Feb 28 2002 - 09:59:42 CST) * Re: Removing perspective projection at startup Alan Wilter Sousa da Silva (Thu Feb 28 2002 - 12:27:47 CST) * Re: Removing perspective projection at startup Justin Gullingsrud (Thu Feb 28 2002 - 11:19:35 CST) * coloring method Fei Xu (Thu Feb 28 2002 - 15:44:11 CST) * Re: Removing perspective projection at startup Stéphane Teletchéa (Fri Mar 01 2002 - 03:12:43 CST) * fwd (Re: coloring method) John Stone (Fri Mar 01 2002 - 15:01:54 CST) * how to color one residue with two or three different colors? Margaret Cheung (Sat Mar 02 2002 - 20:03:45 CST) * Re: Access to Python libraries from Mandrake8.1 Justin Gullingsrud (Sun Mar 03 2002 - 03:16:34 CST) * selection and coloring Fei Xu (Mon Mar 04 2002 - 10:06:35 CST) * Re: how to color one residue with two or three different colors? John Stone (Mon Mar 04 2002 - 15:48:37 CST) * Re: selection and coloring John Stone (Tue Mar 05 2002 - 10:35:48 CST) * create new colors Fei Xu (Thu Mar 07 2002 - 10:49:25 CST) * Can any of you help me out in building VMD pls Kiran, Kotresh (Fri Mar 08 2002 - 05:48:35 CST) * Re: Can any of you help me out in building VMD pls John Stone (Fri Mar 08 2002 - 09:47:04 CST) * Re: create new colors Justin Gullingsrud (Fri Mar 08 2002 - 11:39:58 CST) * Re: Can any of you help me out in building VMD pls John Stone (Mon Mar 11 2002 - 00:11:44 CST) * NAMD 2.4 Released Jim Phillips (Mon Mar 11 2002 - 14:24:39 CST) * atom coloring Dominik Horinek (Mon Mar 11 2002 - 17:59:30 CST) * Re: atom coloring Paul Grayson (Tue Mar 12 2002 - 14:33:29 CST) * RE: atom coloring Laurence F. Wood (Tue Mar 12 2002 - 16:39:37 CST) * New version of VMD movie script/plugin available John Stone (Wed Mar 13 2002 - 00:04:10 CST) * Molscript Alan Wilter Sousa da Silva (Wed Mar 13 2002 - 07:32:50 CST) * Re: New version of VMD movie script/plugin available Alan Wilter Sousa da Silva (Wed Mar 13 2002 - 07:58:33 CST) * Re: Plotting elect. pot. surface Alan Wilter Sousa da Silva (Wed Mar 13 2002 - 08:05:14 CST) * Re: New version of VMD movie script/plugin available Adrian E. Roitberg (Wed Mar 13 2002 - 07:22:32 CST) * Re: Molscript John Stone (Wed Mar 13 2002 - 09:31:36 CST) * Re: New version of VMD movie script/plugin available John Stone (Wed Mar 13 2002 - 09:34:12 CST) * Re: New version of VMD movie script/plugin available John Stone (Wed Mar 13 2002 - 10:34:28 CST) * Re: New version of VMD movie script/plugin available John Stone (Wed Mar 13 2002 - 12:21:54 CST) * boolean operators in graphics Sanjeev B.S. (Thu Mar 14 2002 - 22:11:11 CST) * Re: boolean operators in graphics Andrew Dalke (Thu Mar 14 2002 - 22:32:38 CST) * Re: boolean operators in graphics John Stone (Thu Mar 14 2002 - 22:39:09 CST) * how vmd calculate dihedral angle Yufang Wang (Fri Mar 15 2002 - 00:07:15 CST) * Loading trajectory frames - bug ? Tcl-equivalent ? Marc Baaden (Fri Mar 15 2002 - 06:27:54 CST) * Re: Best hardware for 3d. John Stone (Fri Mar 15 2002 - 10:06:09 CST) * Re: how vmd calculate dihedral angle John Stone (Fri Mar 15 2002 - 10:18:23 CST) * Re: Loading trajectory frames - bug ? Tcl-equivalent ? John Stone (Fri Mar 15 2002 - 20:01:41 CST) * smooth movie Sanjeev B.S. (Sat Mar 16 2002 - 11:24:39 CST) * Re: smooth movie John Stone (Sat Mar 16 2002 - 11:57:54 CST) * graph button on label form Yufang Wang (Sun Mar 17 2002 - 15:03:41 CST) * Re: graph button on label form John Stone (Mon Mar 18 2002 - 15:23:35 CST) * record changed {x y z} Yufang Wang (Wed Mar 20 2002 - 10:50:02 CST) * Re: record changed {x y z} Paul Grayson (Wed Mar 20 2002 - 13:31:50 CST) * Re: Test release of VMD movie maker Margaret Cheung (Thu Mar 21 2002 - 22:34:58 CST) * Re: Help on script John Stone (Thu Mar 21 2002 - 22:55:31 CST) * Re: Test release of VMD movie maker John Stone (Thu Mar 21 2002 - 22:59:10 CST) * Re: Test release of VMD movie maker Margaret Cheung (Fri Mar 22 2002 - 00:17:58 CST) * Re: Test release of VMD movie maker Margaret Cheung (Fri Mar 22 2002 - 01:50:55 CST) * Re: Test release of VMD movie maker John Stone (Fri Mar 22 2002 - 01:43:28 CST) * Re: Test release of VMD movie maker Margaret Cheung (Fri Mar 22 2002 - 02:32:22 CST) * drawing bonds with vmd/python interface Sonja M. Schwarzl (Fri Mar 22 2002 - 09:36:46 CST) * Re: Test release of VMD movie maker John Stone (Fri Mar 22 2002 - 10:39:38 CST) * Re: drawing bonds with vmd/python interface Justin Gullingsrud (Fri Mar 22 2002 - 11:55:45 CST) * RE: Help on script Liu, Zhanwu (Fri Mar 22 2002 - 14:16:53 CST) * single residue mutation Yunfeng Hu (Fri Mar 22 2002 - 14:36:54 CST) * Re: Test release of VMD movie maker Margaret Cheung (Mon Mar 25 2002 - 03:46:35 CST) * another trivial question regarding the key setting. Margaret Cheung (Mon Mar 25 2002 - 06:28:09 CST) * Re: Help on script Christian Simon (Mon Mar 25 2002 - 08:06:27 CST) * Re: another trivial question regarding the key setting. John Stone (Mon Mar 25 2002 - 09:07:14 CST) * Re: another trivial question regarding the key setting. Justin Gullingsrud (Mon Mar 25 2002 - 10:26:37 CST) * RE: Help on script Liu, Zhanwu (Mon Mar 25 2002 - 11:09:49 CST) * python create graphics molecule Don Havelberg (Tue Mar 26 2002 - 07:10:25 CST) * Re: python create graphics molecule Justin Gullingsrud (Tue Mar 26 2002 - 10:15:03 CST) * Resolution of movie? Troy Wymore (Tue Mar 26 2002 - 17:02:43 CST) * Re: python create graphics molecule Don Havelberg (Tue Mar 26 2002 - 17:16:00 CST) * Re: python create graphics molecule Don Havelberg (Tue Mar 26 2002 - 17:19:02 CST) * Re: Resolution of movie? John Stone (Tue Mar 26 2002 - 18:00:20 CST) * Exceeded maximum number of bonds (8) Lu Yang (Sun Mar 31 2002 - 13:19:55 CST) * Re: Exceeded maximum number of bonds (8) John Stone (Sun Mar 31 2002 - 16:38:11 CST) * picture/resid color Peter Varnai (Tue Apr 02 2002 - 11:11:36 CST) * Re: picture/resid color John Stone (Tue Apr 02 2002 - 11:18:55 CST) * orthographic views and size Marc Baaden (Wed Apr 03 2002 - 03:43:28 CST) * strange bond Nguyen Hoang Phuong (Wed Apr 03 2002 - 05:24:16 CST) * Re: strange bond John Stone (Wed Apr 03 2002 - 09:48:14 CST) * Re: orthographic views and size John Stone (Wed Apr 03 2002 - 09:53:30 CST) * Re: strange bond Nguyen Hoang Phuong (Wed Apr 03 2002 - 10:20:54 CST) * Re: strange bond John Stone (Wed Apr 03 2002 - 10:45:40 CST) * Re: strange bond Justin Gullingsrud (Wed Apr 03 2002 - 10:46:09 CST) * Re: strange bond Nguyen Hoang Phuong (Wed Apr 03 2002 - 11:03:00 CST) * resid color Peter VARNAI (Wed Apr 03 2002 - 12:00:09 CST) * Re: strange bond Paul Grayson (Wed Apr 03 2002 - 12:37:30 CST) * Re: resid color John Stone (Wed Apr 03 2002 - 12:40:29 CST) * Re: strange bond Nguyen Hoang Phuong (Wed Apr 03 2002 - 12:49:57 CST) * Re: strange bond John Stone (Wed Apr 03 2002 - 14:01:36 CST) * Re: strange bond Paul Grayson (Wed Apr 03 2002 - 14:05:41 CST) * draw text or title in pov Peter Varnai (Thu Apr 04 2002 - 10:04:03 CST) * Re: draw text or title in pov John Stone (Thu Apr 04 2002 - 21:56:25 CST) * Announce: new vmdmovie script available... John Stone (Mon Apr 08 2002 - 22:23:01 CDT) * Geforce 3 DRI crashes Mikko Huhtala (Tue Apr 09 2002 - 08:37:11 CDT) * Re: Geforce 3 DRI crashes John Stone (Tue Apr 09 2002 - 09:57:55 CDT) * Fixing CAVE Functionality Todd J. Furlong (Tue Apr 09 2002 - 10:27:49 CDT) * Re: Electron Density Map Display John Stone (Tue Apr 09 2002 - 13:02:21 CDT) * Re: Geforce 3 DRI crashes John Stone (Tue Apr 09 2002 - 13:07:18 CDT) * Animation Paul Hubbard (Tue Apr 09 2002 - 14:12:49 CDT) * Re: Animation John Stone (Tue Apr 09 2002 - 14:24:36 CDT) * Re: Animation Justin Gullingsrud (Tue Apr 09 2002 - 14:36:36 CDT) * Which drawing method is used in the picture? Anna Aagaard (Tue Apr 09 2002 - 14:40:17 CDT) * Re: Which drawing method is used in the picture? John Stone (Tue Apr 09 2002 - 15:01:03 CDT) * Re: Which drawing method is used in the picture? Andrew Dalke (Tue Apr 09 2002 - 15:04:19 CDT) * Re: Which drawing method is used in the picture? John Stone (Tue Apr 09 2002 - 15:50:12 CDT) * Re: Linking with FLTK 1.1.0b12 John Stone (Tue Apr 09 2002 - 16:01:55 CDT) * Re: Animation Paul Hubbard (Tue Apr 09 2002 - 15:09:40 CDT) * Re: Linking with FLTK 1.1.0b12 Justin Gullingsrud (Tue Apr 09 2002 - 16:43:48 CDT) * Re: Geforce 3 DRI crashes Stéphane Teletchéa (Wed Apr 10 2002 - 04:10:21 CDT) * Re: Which drawing method is used in the picture? Alan Wilter Sousa da Silva (Wed Apr 10 2002 - 10:20:05 CDT) * RE: Animation John Stone (Wed Apr 10 2002 - 09:18:24 CDT) * VMD 1.7.1 in CAVE? Todd J. Furlong (Fri Apr 12 2002 - 07:57:05 CDT) * Re: VMD 1.7.1 in CAVE? John Stone (Fri Apr 12 2002 - 09:28:46 CDT) * about graphics accelaration Emanuel Vamvakopoulos (Fri Apr 12 2002 - 11:36:49 CDT) * Re: about graphics accelaration John Stone (Fri Apr 12 2002 - 12:27:41 CDT) * Re: about graphics accelaration Stéphane Teletchéa (Mon Apr 15 2002 - 03:22:03 CDT) * stl Patricia Soto (Wed Apr 17 2002 - 05:08:20 CDT) * pdb naming convention Adrian E. Roitberg (Wed Apr 17 2002 - 07:59:32 CDT) * Re: stl John Stone (Wed Apr 17 2002 - 08:52:40 CDT) * Re: pdb naming convention Justin Gullingsrud (Wed Apr 17 2002 - 10:26:39 CDT) * How to plot the data created by VMD analysis script - difference_matrix? Joe Huang (Thu Apr 18 2002 - 14:22:40 CDT) * Graphics card & Accelerator Sanjeev B.S. (Fri Apr 19 2002 - 02:58:22 CDT) * Re: Graphics card & Accelerator Stéphane Teletchéa (Fri Apr 19 2002 - 06:15:18 CDT) * Re: How to plot the data created by VMD analysis script - difference_matrix? John Stone (Mon Apr 22 2002 - 14:48:19 CDT) * Re: GnuPlot works! John Stone (Mon Apr 22 2002 - 17:09:31 CDT) * Re: GnuPlot works! Joe Huang (Mon Apr 22 2002 - 18:10:45 CDT) * Re: How to plot the data created by VMD analysis script - difference_matrix? Sanjeev B.S. (Mon Apr 22 2002 - 21:34:51 CDT) * color by resid Tran Trung Tran (Mon Apr 22 2002 - 23:31:52 CDT) * Re: color by resid Don Havelberg (Tue Apr 23 2002 - 02:02:23 CDT) * RE: color by resid Tran Trung Tran (Tue Apr 23 2002 - 18:28:57 CDT) * About drawing bonds. Luca UvA (Wed Apr 24 2002 - 08:07:32 CDT) * Re: About drawing bonds. John Stone (Wed Apr 24 2002 - 10:11:10 CDT) * Re: color by resid John Stone (Thu Apr 25 2002 - 14:02:30 CDT) * Animate data Nguyen Hoang Phuong (Fri Apr 26 2002 - 12:31:38 CDT) * Reading GOLD .sdf output files Todd J. Furlong (Tue Apr 30 2002 - 09:09:03 CDT) * Regular Expression problem with $ jen ramus (Tue Apr 30 2002 - 20:24:52 CDT) * Re: Regular Expression problem with $ Andrew Dalke (Tue Apr 30 2002 - 20:38:10 CDT) * Re: RDFs, TCFs etc. John Stone (Mon May 06 2002 - 10:15:14 CDT) * RDFs etc Storr, Mark (Mon May 06 2002 - 11:18:54 CDT) * Animating Trajectories/NAMD Output files Storr, Mark (Tue May 07 2002 - 13:06:43 CDT) * Re: Animating Trajectories/NAMD Output files Barry Isralewitz (Tue May 07 2002 - 22:15:21 CDT) * Re: Animating Trajectories/NAMD Output files Barry Isralewitz (Wed May 08 2002 - 11:01:26 CDT) * RE: Animating Trajectories/NAMD Output files Storr, Mark (Wed May 08 2002 - 11:16:23 CDT) * Re: Animating Trajectories/NAMD Output files Barry Isralewitz (Wed May 08 2002 - 11:37:05 CDT) * VMD 1.7.1 Ross J. Toedte (Thu May 09 2002 - 13:57:02 CDT) * Re: VMD 1.7.1 John Stone (Thu May 09 2002 - 14:28:43 CDT) * compilation error Tommy Wang (Fri May 10 2002 - 07:52:24 CDT) * Re: compilation error Todd J. Furlong (Fri May 10 2002 - 10:13:56 CDT) * Re: compilation error John Stone (Fri May 10 2002 - 10:31:05 CDT) * transparency tripp@fis.unam.mx (Fri May 10 2002 - 11:46:01 CDT) * Re: transparency John Stone (Fri May 10 2002 - 12:57:52 CDT) * Re: transparency Todd J. Furlong (Mon May 13 2002 - 11:20:57 CDT) * Re: transparency John Stone (Mon May 13 2002 - 11:42:13 CDT) * RE: transparency Laurence F. Wood (Mon May 13 2002 - 13:09:19 CDT) * Re: transparency John Stone (Mon May 13 2002 - 13:25:59 CDT) * Write DCD Storr, Mark (Tue May 14 2002 - 09:51:06 CDT) * Re: Write DCD Justin Gullingsrud (Tue May 14 2002 - 10:03:16 CDT) * Main window (button bars) does not start Akemi Yagi (Tue May 14 2002 - 10:02:18 CDT) * Re: Main window (button bars) does not start John Stone (Tue May 14 2002 - 10:11:44 CDT) * Re: about graphics accelaration Stéphane Teletchéa (Wed May 15 2002 - 10:47:04 CDT) * Re: about graphics accelaration John Stone (Wed May 15 2002 - 11:21:56 CDT) * my solution to the freezing problem. Tommy Wang (Wed May 15 2002 - 20:32:30 CDT) * atoms filter? Wuwei Liang (Thu May 16 2002 - 13:03:35 CDT) * Re: atoms filter? John Stone (Thu May 16 2002 - 10:09:07 CDT) * Babel and Windows Storr, Mark (Tue May 21 2002 - 08:22:37 CDT) * Metal_Envornment Script Storr, Mark (Fri May 24 2002 - 11:38:00 CDT) * Re: Metal_Envornment Script John Stone (Fri May 24 2002 - 12:02:42 CDT) * Re: Metal_Envornment Script John Stone (Fri May 24 2002 - 12:05:19 CDT) * Re: Metal_Envornment Script John Stone (Fri May 24 2002 - 15:40:24 CDT) * VMD 1.8 alpha 10, publically available for testing.... John Stone (Fri May 24 2002 - 16:20:54 CDT) * fiiting Vlad Cojocaru (Mon May 27 2002 - 09:30:59 CDT) * Re: fiiting Justin Gullingsrud (Mon May 27 2002 - 10:24:14 CDT) * Re: fiiting Justin Gullingsrud (Mon May 27 2002 - 12:25:44 CDT) * MSD Storr, Mark (Wed May 29 2002 - 10:43:53 CDT) * Re: MSD Paul Grayson (Wed May 29 2002 - 11:03:40 CDT) * Re: MSD Hannes Loeffler (Thu May 30 2002 - 01:29:13 CDT) * compilation problem using vmd1.8 alpha Tommy Wang (Thu May 30 2002 - 19:52:15 CDT) * Re: compilation problem using vmd1.8 alpha John Stone (Thu May 30 2002 - 20:11:30 CDT) * problem with amber 6 restart files (parm and rst) Raik Grunberg (Tue Jun 04 2002 - 04:08:40 CDT) * Re: problem with amber 6 restart files (parm and rst) Stéphane Teletchéa (Tue Jun 04 2002 - 06:39:20 CDT) * Default parameters for image renderers Reinhard Klement (Wed Jun 05 2002 - 04:20:15 CDT) * Mac Titanium video card Christian Simon (Wed Jun 05 2002 - 17:06:20 CDT) * haptic interfaces Will Sheffler (Thu Jun 06 2002 - 00:11:34 CDT) * Re: haptic interfaces John Stone (Thu Jun 06 2002 - 00:24:19 CDT) * Re: haptic interfaces && namd on clusters Will Sheffler (Thu Jun 06 2002 - 01:27:25 CDT) * Re: haptic interfaces && namd on clusters John Stone (Thu Jun 06 2002 - 01:41:32 CDT) * Mandrake and VMD Dmitry Kovalsky (Thu Jun 06 2002 - 04:22:15 CDT) * Re: Mandrake and VMD John Stone (Thu Jun 06 2002 - 09:55:07 CDT) * Plugin testing B. Bennion (Thu Jun 06 2002 - 12:07:05 CDT) * Problem with instalation process jrui@ci.uc.pt (Thu Jun 06 2002 - 19:03:09 CDT) * psfgen crashes VMD jrui@ci.uc.pt (Thu Jun 06 2002 - 19:55:28 CDT) * TK script problem Wuwei Liang (Fri Jun 07 2002 - 12:11:13 CDT) * Re: TK script problem Justin Gullingsrud (Fri Jun 07 2002 - 09:32:02 CDT) * vibration Nguyen Hoang Phuong (Fri Jun 07 2002 - 10:13:54 CDT) * Re: vibration John Stone (Fri Jun 07 2002 - 11:32:21 CDT) * Re: Problem with instalation process John Stone (Fri Jun 07 2002 - 11:42:32 CDT) * Re: psfgen crashes VMD John Stone (Fri Jun 07 2002 - 11:44:41 CDT) * Re: vibration Nguyen Hoang Phuong (Fri Jun 07 2002 - 12:55:30 CDT) * Re: Problem with instalation process John Stone (Fri Jun 07 2002 - 14:08:57 CDT) * Re: vibration John Stone (Fri Jun 07 2002 - 14:27:39 CDT) * Re: Problem with instalation process John Stone (Fri Jun 07 2002 - 14:30:28 CDT) * Re: vibration kr@isise.rl.ac.uk (Sat Jun 08 2002 - 02:56:39 CDT) * Re: Default parameters for image renderers John Stone (Sat Jun 08 2002 - 22:24:24 CDT) * Re: Mac Titanium video card John Stone (Sat Jun 08 2002 - 23:45:47 CDT) * MANDRAKE and VMD Dmitry Kovalsky (Sun Jun 09 2002 - 03:35:45 CDT) * Re: Re: Mac Titanium video card Christian Simon (Mon Jun 10 2002 - 07:45:42 CDT) * vmd-1.8a10; psfgen; AMBER-trajectories; strange bondlengths Johannes von Langen (Tue Jun 11 2002 - 03:17:31 CDT) * Re: problem with amber 6 restart files (parm and rst) Johannes von Langen (Tue Jun 11 2002 - 03:57:29 CDT) * Re: vmd-1.8a10; psfgen; AMBER-trajectories; strange bondlengths John Stone (Wed Jun 12 2002 - 01:18:34 CDT) * vdw radii Sanjeev B.S. (Thu Jun 13 2002 - 04:51:42 CDT) * Tracking devices and VMD Brendan O'Malley (Mon Jun 17 2002 - 04:15:07 CDT) * Re: Tracking devices and VMD John Stone (Mon Jun 17 2002 - 11:38:55 CDT) * Re: moving objects John Stone (Mon Jun 17 2002 - 13:40:21 CDT) * No 'Primary File Type' in Load menu (v1.8a10 on MacOSX) Christian Simon (Thu Jun 20 2002 - 08:01:20 CDT) * Re: No 'Primary File Type' in Load menu (v1.8a10 on MacOSX) John Stone (Thu Jun 20 2002 - 10:12:40 CDT) * VMD 1.8 alpha 16, publically available for testing.... John Stone (Fri Jun 21 2002 - 16:14:14 CDT) * image jumps Y U Sasidhar (Sat Jun 22 2002 - 00:03:46 CDT) * animations with molecular surfaces Will Sheffler (Sat Jun 22 2002 - 02:32:12 CDT) * animation from files with different numbers of atoms Jennifer Young (Sat Jun 22 2002 - 16:21:01 CDT) * Re: animation from files with different numbers of atoms Justin Gullingsrud (Sat Jun 22 2002 - 17:07:56 CDT) * Unable to generate surface Sanjeev B.S. (Sun Jun 23 2002 - 21:40:32 CDT) * vmd1.8a16 - no stereo on linux any more Johannes von Langen (Mon Jun 24 2002 - 06:47:02 CDT) * Re: vmd1.8a16 - no stereo on linux any more John Stone (Mon Jun 24 2002 - 10:28:07 CDT) * Re: Unable to generate surface John Stone (Mon Jun 24 2002 - 11:33:52 CDT) * Re: vmd1.8a16 - no stereo on linux any more John Stone (Mon Jun 24 2002 - 11:35:41 CDT) * MacOS native version resource attach info... John Stone (Mon Jun 24 2002 - 11:46:10 CDT) * Re: VMD 1.8 alpha 16, publically available ... Christian Simon (Mon Jun 24 2002 - 13:43:23 CDT) * Re: animations with molecular surfaces John Stone (Mon Jun 24 2002 - 14:17:12 CDT) * viewing insight trajectories with vmd Bjoern Windshuegel (Tue Jun 25 2002 - 01:29:15 CDT) * Re: MacOS native version resource attach info... tom keyes (Tue Jun 25 2002 - 10:44:22 CDT) * RMSD (Re-send of James Cavenaugh's bounced mail) John Stone (Tue Jun 25 2002 - 10:50:33 CDT) * Re: MacOS native version resource attach info... John Stone (Tue Jun 25 2002 - 11:02:08 CDT) * Mac OSX version Chris Upton (Tue Jun 25 2002 - 12:18:47 CDT) * Re: Mac OSX version John Stone (Tue Jun 25 2002 - 12:49:54 CDT) * Re: image jumps John Stone (Tue Jun 25 2002 - 15:00:36 CDT) * Re: viewing insight trajectories with vmd John Stone (Tue Jun 25 2002 - 15:15:22 CDT) * Simple format for animation Mario Schubert (Fri Jun 28 2002 - 07:19:31 CDT) * VMD not working anymore sjcav@aros.net (Sat Jun 29 2002 - 01:26:26 CDT) * follow-up to previous message sjcav@aros.net (Sat Jun 29 2002 - 03:56:13 CDT) * Q: Compiling VMD on IRIX 6.5 ran friedman (Mon Jul 01 2002 - 09:07:30 CDT) * Re: Q: Compiling VMD on IRIX 6.5 John Stone (Mon Jul 01 2002 - 09:27:10 CDT) * Issue with wildcat 3 cards Will Sheffler (Mon Jul 01 2002 - 14:13:09 CDT) * VMD 1.8 alpha 16 MacOSX depends on xterm MengJuei Hsieh (Mon Jul 01 2002 - 14:34:29 CDT) * Re: Issue with wildcat 3 cards John Stone (Mon Jul 01 2002 - 14:34:08 CDT) * Re: VMD 1.8 alpha 16 MacOSX depends on xterm John Stone (Mon Jul 01 2002 - 14:36:44 CDT) * RE: Issue with wildcat 3 cards Mads Norregaard-Madsen (Mon Jul 01 2002 - 18:37:15 CDT) * Re: VMD 1.8 alpha 16 MacOSX depends on xterm John Stone (Mon Jul 01 2002 - 21:55:40 CDT) * resolution for previous message sjcav@aros.net (Wed Jul 03 2002 - 05:30:00 CDT) * problem with bitmap rendering sjcav@aros.net (Wed Jul 03 2002 - 05:35:56 CDT) * Re: problem with bitmap rendering John Stone (Wed Jul 03 2002 - 09:24:14 CDT) * MacOS X VMD 1.8 alpha 16 "bundle" test version... John Stone (Wed Jul 03 2002 - 14:47:59 CDT) * JMV Molecular Viewer Support within BioCoRE Robert Brunner (Wed Jul 03 2002 - 16:19:02 CDT) * Re: MacOS X VMD 1.8 alpha 16 "bundle" test version... MengJuei Hsieh (Wed Jul 03 2002 - 17:22:36 CDT) * Re: Simple format for animation John Stone (Wed Jul 03 2002 - 19:45:33 CDT) * Re: MacOS X VMD 1.8 alpha 16 "bundle" test version... Holger Frauenrath (Thu Jul 04 2002 - 11:11:11 CDT) * MacOSX bundle Chris Upton (Sat Jul 06 2002 - 00:16:13 CDT) * Re: MacOSX bundle John Stone (Sat Jul 06 2002 - 18:08:10 CDT) * residue rotation within single pdb file B. Bennion (Sun Jul 07 2002 - 02:27:32 CDT) * Re: residue rotation within single pdb file Justin Gullingsrud (Sun Jul 07 2002 - 11:21:13 CDT) * Re: MacOS X VMD 1.8 alpha 16 "bundle" test version... John Stone (Tue Jul 09 2002 - 14:05:23 CDT) * Compressed files Stéphane Teletchéa (Thu Jul 11 2002 - 03:17:41 CDT) * Re: Compressed files John Stone (Thu Jul 11 2002 - 10:26:13 CDT) * Problem installing on linux Russell Poyner (Thu Jul 11 2002 - 16:16:18 CDT) * VMD stereo with Radeon 8500 and crystal eyes on Xig Xserver Dr. Dan White (Fri Jul 12 2002 - 08:10:32 CDT) * Re: Problem installing on linux John Stone (Fri Jul 12 2002 - 11:38:09 CDT) * VMD / Eye3D stereo works on Mac G4... John Stone (Fri Jul 12 2002 - 13:18:21 CDT) * Re: Problem installing on linux Russell Poyner (Fri Jul 12 2002 - 12:43:03 CDT) * Re: Problem installing on linux John Stone (Fri Jul 12 2002 - 14:24:12 CDT) * New VMD 1.8 alpha 20 MacOS X native OpenGL test version... John Stone (Sat Jul 13 2002 - 22:39:49 CDT) * Adding labels, etc. Sanjeev B.S. (Sun Jul 14 2002 - 05:40:26 CDT) * Re: Adding labels, etc. Justin Gullingsrud (Sun Jul 14 2002 - 12:25:20 CDT) * VMD and Trackers Brendan O'Malley (Sun Jul 14 2002 - 19:22:45 CDT) * Not able to read a restart file from AMBER Stéphane Teletchéa (Mon Jul 15 2002 - 06:17:26 CDT) * Re: Not able to read a restart file from AMBER MengJuei Hsieh (Mon Jul 15 2002 - 15:48:53 CDT) * vmd on mac 9.1 eric hu (Tue Jul 16 2002 - 13:39:14 CDT) * Re: vmd on mac 9.1 John Stone (Tue Jul 16 2002 - 14:05:06 CDT) * Re: VMD and Trackers John Stone (Tue Jul 16 2002 - 14:39:12 CDT) * Re: plugin problems John Stone (Tue Jul 16 2002 - 14:45:39 CDT) * Re: VMD and Trackers John Stone (Tue Jul 16 2002 - 15:04:35 CDT) * Re: vmd on mac 9.1 MengJuei Hsieh (Tue Jul 16 2002 - 15:56:54 CDT) * vmd python availability on other platforms jen ramus (Tue Jul 16 2002 - 22:31:07 CDT) * problem reading AMBER7 parm file Jeff Ames (Wed Jul 17 2002 - 01:51:49 CDT) * icon in LABEL Pascal Bonnet (Wed Jul 17 2002 - 08:17:58 CDT) * Re: Windows vs. Linux John Stone (Wed Jul 17 2002 - 09:43:32 CDT) * Re: problem reading AMBER7 parm file John Stone (Wed Jul 17 2002 - 09:55:15 CDT) * Re: icon in LABEL John Stone (Wed Jul 17 2002 - 10:10:03 CDT) * Re: problem reading AMBER7 parm file John Stone (Wed Jul 17 2002 - 10:23:08 CDT) * Re: vmd on mac 9.1 eric hu (Wed Jul 17 2002 - 11:00:35 CDT) * Re: Simple format for animation John Stone (Wed Jul 17 2002 - 15:08:14 CDT) * Re: vmd python availability on other platforms John Stone (Wed Jul 17 2002 - 15:13:46 CDT) * VMD 1.8 alpha 21 available for testing! John Stone (Thu Jul 18 2002 - 19:49:09 CDT) * [gcarter@circular.dna.caltech.edu: Re: Stereoglasses Linux] John Stone (Fri Jul 19 2002 - 13:37:11 CDT) * Linux/Intel configuration for processing large trajectory file Liu, Zhanwu (Fri Jul 19 2002 - 17:18:10 CDT) * tracker coordinate calibration Will Sheffler (Fri Jul 19 2002 - 23:43:53 CDT) * Re: tracker coordinate calibration John Stone (Sat Jul 20 2002 - 00:58:51 CDT) * bonds in graphical representation Marcela Madrid (Sat Jul 20 2002 - 15:20:08 CDT) * No sequence tool for DNA Stéphane Teletchéa (Mon Jul 22 2002 - 04:53:57 CDT) * Re: Linux/Intel configuration for processing large trajectory file Johannes von Langen (Mon Jul 22 2002 - 05:26:19 CDT) * Re: No sequence tool for DNA John Stone (Tue Jul 23 2002 - 22:01:06 CDT) * Re: bonds in graphical representation John Stone (Tue Jul 23 2002 - 22:10:19 CDT) * conect2psf Andrew Dalke (Tue Jul 23 2002 - 23:35:06 CDT) * Re: conect2psf Eugen Leitl (Wed Jul 24 2002 - 04:14:53 CDT) * Re: conect2psf Andrew Dalke (Wed Jul 24 2002 - 04:51:04 CDT) * 2D projection Stéphane Teletchéa (Thu Jul 25 2002 - 08:12:15 CDT) * problem connecting namd/vmd using charmrun/charmd Will Sheffler (Thu Jul 25 2002 - 13:19:23 CDT) * Re: problem connecting namd/vmd using charmrun/charmd Will Sheffler (Thu Jul 25 2002 - 13:58:39 CDT) * Problem with VMD on linux with Xig solved Russell Poyner (Wed Jul 24 2002 - 13:18:43 CDT) * Re: 2D projection John Stone (Fri Jul 26 2002 - 09:40:38 CDT) * Re: 2D projection Paul Grayson (Fri Jul 26 2002 - 10:11:58 CDT) * Linux compile error Cesar Delgado (Fri Jul 26 2002 - 15:47:34 CDT) * More Linux woes Cesar Delgado (Fri Jul 26 2002 - 16:08:10 CDT) * delete bonds in TIP3P water model Pascal Bonnet (Sat Jul 27 2002 - 05:51:49 CDT) * charmm vs amber Tommy Wang (Mon Jul 29 2002 - 07:01:07 CDT) * Re: white background John Stone (Mon Jul 29 2002 - 11:01:12 CDT) * Re: More Linux woes John Stone (Mon Jul 29 2002 - 13:42:58 CDT) * Re: Linux compile error John Stone (Mon Jul 29 2002 - 13:46:08 CDT) * delete bonds in TIP3P Pascal Bonnet (Wed Jul 31 2002 - 06:52:07 CDT) * Re: delete bonds in TIP3P John Stone (Wed Jul 31 2002 - 08:12:28 CDT) * vmdmovie problem mimurra3 (Thu Aug 01 2002 - 14:07:25 CDT) * Chromium Cesar Delgado (Thu Aug 01 2002 - 15:16:31 CDT) * Re: Chromium John Stone (Thu Aug 01 2002 - 15:48:34 CDT) * Re: Chromium Cesar Delgado (Thu Aug 01 2002 - 16:07:40 CDT) * Re: Chromium John Stone (Thu Aug 01 2002 - 16:15:00 CDT) * Re: Chromium Cesar Delgado (Thu Aug 01 2002 - 16:21:54 CDT) * Re: vmdmovie problem John Stone (Thu Aug 01 2002 - 20:00:51 CDT) * Re: vmdmovie problem Michael Murray (Thu Aug 01 2002 - 23:52:26 CDT) * Re: vmdmovie problem John Stone (Thu Aug 01 2002 - 23:53:24 CDT) * Projection on plane Raj Gupta (Fri Aug 02 2002 - 10:41:38 CDT) * Re: Projection on plane John Stone (Fri Aug 02 2002 - 10:48:41 CDT) * namd callback command Will Sheffler (Mon Aug 05 2002 - 03:51:14 CDT) * Problem with stride Troy Wymore (Mon Aug 05 2002 - 11:54:21 CDT) * Re: Problem with stride John Stone (Mon Aug 05 2002 - 12:30:56 CDT) * Re: Problem with stride Troy Wymore (Mon Aug 05 2002 - 13:01:58 CDT) * Re: Chromium John Stone (Mon Aug 05 2002 - 14:33:57 CDT) * Re: Chromium Cesar Delgado (Mon Aug 05 2002 - 16:19:09 CDT) * Structural Biology Software Database updated... John Stone (Tue Aug 06 2002 - 10:24:14 CDT) * Question about dihedral angles in VMD. Joe Huang (Wed Aug 07 2002 - 15:01:06 CDT) * Re: Question about dihedral angles in VMD. Justin Gullingsrud (Wed Aug 07 2002 - 15:29:38 CDT) * VMD with stereo on RedHat Linux Steve Chen (Wed Aug 07 2002 - 18:49:27 CDT) * Re: VMD with stereo on RedHat Linux John Stone (Wed Aug 07 2002 - 21:14:55 CDT) * Re: VMD with stereo on RedHat Linux John Stone (Wed Aug 07 2002 - 21:17:15 CDT) * Gromacs XTC reader broken in 1.8beta version Marc Baaden (Thu Aug 08 2002 - 10:34:56 CDT) * Re: Gromacs XTC reader broken in 1.8beta version John Stone (Thu Aug 08 2002 - 12:46:19 CDT) * Couldn't open required GL library J. Rui Rodrigues (Thu Aug 08 2002 - 18:48:37 CDT) * index Sanjeev B.S. (Fri Aug 09 2002 - 02:28:45 CDT) * Re: Couldn't open required GL library John Stone (Fri Aug 09 2002 - 15:32:33 CDT) * Re: vmdmovie problem John Stone (Fri Aug 09 2002 - 17:00:08 CDT) * Joysticks for VMD on Windows XP Jill Vickery (Mon Aug 12 2002 - 17:46:29 CDT) * Re: Joysticks for VMD on Windows XP John Stone (Mon Aug 12 2002 - 18:49:35 CDT) * Windows XP and Eye3D glasses Jill Vickery (Tue Aug 13 2002 - 11:53:48 CDT) * Cannot start CAVE display Pawel Kedzierski (Tue Aug 13 2002 - 15:20:17 CDT) * Re: Cannot start CAVE display John Stone (Tue Aug 13 2002 - 15:15:27 CDT) * Re: Windows XP and Eye3D glasses John Stone (Tue Aug 13 2002 - 15:29:37 CDT) * Re: Windows XP and Eye3D glasses John Stone (Tue Aug 13 2002 - 17:01:37 CDT) * Phantom on Sgi? Kenneth Ayers (Wed Aug 14 2002 - 08:41:13 CDT) * Re: Phantom on Sgi? John Stone (Wed Aug 14 2002 - 10:16:58 CDT) * rmsd problem Vlad Cojocaru (Wed Aug 14 2002 - 10:46:48 CDT) * VMD and rendering packages Marc Baaden (Wed Aug 14 2002 - 11:01:13 CDT) * Re: VMD and rendering packages John Stone (Wed Aug 14 2002 - 11:30:51 CDT) * Re: rmsd problem John Stone (Wed Aug 14 2002 - 11:35:17 CDT) * [Contribute] transparent MacOS X icon for VMD MengJuei Hsieh (Wed Aug 14 2002 - 19:15:49 CDT) * Separate graphical objects? Pawel Kedzierski (Wed Aug 14 2002 - 23:40:31 CDT) * selection question Vlad Cojocaru (Thu Aug 15 2002 - 07:28:58 CDT) * Re: selection question Justin Gullingsrud (Thu Aug 15 2002 - 08:51:05 CDT) * Re: Separate graphical objects? Justin Gullingsrud (Thu Aug 15 2002 - 16:05:55 CDT) * Re: [Contribute] transparent MacOS X icon for VMD John Stone (Thu Aug 15 2002 - 17:08:44 CDT) * Re: Cannot start CAVE display Pawel Kedzierski (Thu Aug 15 2002 - 23:00:42 CDT) * the same problem Vlad Cojocaru (Fri Aug 16 2002 - 04:33:55 CDT) * Re: the same problem Justin Gullingsrud (Fri Aug 16 2002 - 08:56:28 CDT) * Saving two molecules into one PDB file Reinhard Klement (Fri Aug 16 2002 - 09:41:54 CDT) * movie maker plugin doesn't load Dr. Dan White (Fri Aug 16 2002 - 10:54:22 CDT) * Re: movie maker plugin doesn't load Justin Gullingsrud (Fri Aug 16 2002 - 11:07:18 CDT) * Re: Cannot start CAVE display John Stone (Fri Aug 16 2002 - 11:32:42 CDT) * Re: Saving two molecules into one PDB file John Stone (Fri Aug 16 2002 - 13:44:32 CDT) * Re: Couldn't open required GL library John Stone (Fri Aug 16 2002 - 14:40:18 CDT) * Re: Couldn't open required GL library John Stone (Fri Aug 16 2002 - 15:13:30 CDT) * Charge coloring and Stereo hot keys Jill Vickery (Fri Aug 16 2002 - 17:48:55 CDT) * Re: [Contribute] transparent MacOS X icon for VMD MengJuei Hsieh (Fri Aug 16 2002 - 20:54:41 CDT) * Re: Separate graphical objects? Pawel Kedzierski (Sat Aug 17 2002 - 11:36:24 CDT) * Re: Separate graphical objects? Justin Gullingsrud (Sat Aug 17 2002 - 12:01:07 CDT) * SURF_BIN and psfgen missing? Jeroen Akershoek (Mon Aug 19 2002 - 03:33:41 CDT) * Re: SURF_BIN and psfgen missing? John Stone (Mon Aug 19 2002 - 09:45:59 CDT) * Re: Charge coloring and Stereo hot keys John Stone (Mon Aug 19 2002 - 10:29:48 CDT) * Re: rmsd problem John Stone (Mon Aug 19 2002 - 11:42:08 CDT) * Re: [Contribute] transparent MacOS X icon for VMD John Stone (Mon Aug 19 2002 - 11:47:21 CDT) * save Vlad Cojocaru (Tue Aug 20 2002 - 06:15:02 CDT) * Re: save John Stone (Tue Aug 20 2002 - 17:23:26 CDT) * SPACEBALLS Jill Vickery (Wed Aug 21 2002 - 17:19:08 CDT) * Re: SPACEBALLS John Stone (Wed Aug 21 2002 - 17:39:15 CDT) * Re: SPACEBALLS .. in Europe ? Marc Baaden (Thu Aug 22 2002 - 03:23:49 CDT) * Re: SPACEBALLS .. in Europe ? Surjit Dixit (Thu Aug 22 2002 - 08:02:47 CDT) * Re: SPACEBALLS .. in Europe ? John Stone (Thu Aug 22 2002 - 09:50:12 CDT) * reading cube files Vlad Cojocaru (Thu Aug 22 2002 - 10:58:09 CDT) * Re: reading cube files John Stone (Thu Aug 22 2002 - 11:34:29 CDT) * ftp failed Hitoshi Nejo (Fri Aug 23 2002 - 02:14:23 CDT) * Secondary structure Mark Hilge (Fri Aug 23 2002 - 09:18:52 CDT) * Re: Secondary structure Justin Gullingsrud (Fri Aug 23 2002 - 09:49:03 CDT) * Re: Secondary structure Robert Campbell (Fri Aug 23 2002 - 12:13:44 CDT) * stereo on linux: DTI monitors? Peter Tieleman (Sat Aug 24 2002 - 00:12:23 CDT) * Re: stereo on linux: DTI monitors? Johannes von Langen (Mon Aug 26 2002 - 02:57:32 CDT) * Re: ftp failed John Stone (Mon Aug 26 2002 - 10:58:43 CDT) * Re: stereo on linux: DTI monitors? John Stone (Mon Aug 26 2002 - 11:10:48 CDT) * Re: ftp failed $B:,>k(J $B6Q(J (Tue Aug 27 2002 - 02:35:49 CDT) * RE: stereo on linux: DTI monitors? Mads Nørregaard-Madsen (Tue Aug 27 2002 - 03:38:14 CDT) * Problem with VMD 1.8a21 under MacOS X 10.2 Jeffrey D. Hartgerink (Tue Aug 27 2002 - 12:32:44 CDT) * Re: Problem with VMD 1.8a21 under MacOS X 10.2 John Stone (Tue Aug 27 2002 - 12:53:55 CDT) * Stereo on Linux: Eyes3D Premium + Nvidia Pawel Kedzierski (Tue Aug 27 2002 - 23:49:49 CDT) * from points to a surface ? Marc Baaden (Wed Aug 28 2002 - 03:03:48 CDT) * Re: Stereo on Linux: Eyes3D Premium + Nvidia John Stone (Wed Aug 28 2002 - 14:58:20 CDT) * Re: from points to a surface ? John Stone (Wed Aug 28 2002 - 15:05:35 CDT) * Re: ftp failed John Stone (Wed Aug 28 2002 - 15:28:00 CDT) * Re: from points to a surface ? Marc Baaden (Wed Aug 28 2002 - 16:35:10 CDT) * Re: from points to a surface ? John Stone (Wed Aug 28 2002 - 16:43:21 CDT) * Re: from points to a surface ? Paul Grayson (Wed Aug 28 2002 - 17:08:19 CDT) * Re: ftp failed $B:,>k(J $B6Q(J (Thu Aug 29 2002 - 03:21:12 CDT) * Re: Stereo on Linux: Eyes3D Premium + Nvidia John Stone (Thu Aug 29 2002 - 09:40:40 CDT) * Getting history and file completion to work in vmd console ? Marc Baaden (Fri Aug 30 2002 - 04:02:47 CDT) * Re: from points to a surface ? Marc Baaden (Fri Aug 30 2002 - 04:37:22 CDT) * VMD and CHARMm format Nicolas Foloppe (Fri Aug 30 2002 - 04:54:19 CDT) * Re: Getting history and file completion to work in vmd console ? Justin Gullingsrud (Fri Aug 30 2002 - 08:37:04 CDT) * Re: Getting history and file completion to work in vmd console ? Paul Grayson (Fri Aug 30 2002 - 09:36:22 CDT) * Re: Getting history and file completion to work in vmd console ? Marc Baaden (Fri Aug 30 2002 - 09:48:28 CDT) * Re: Getting history and file completion to work in vmd console ? John Stone (Fri Aug 30 2002 - 09:58:28 CDT) * Re: from points to a surface ? Paul Grayson (Fri Aug 30 2002 - 09:59:54 CDT) * Re: Getting history and file completion to work in vmd console ? Paul Grayson (Fri Aug 30 2002 - 10:01:50 CDT) * People having plugin troubles, READ THIS John Stone (Fri Aug 30 2002 - 13:54:55 CDT) * All that I never took the time to ask about VMD ... Marc Baaden (Sat Aug 31 2002 - 07:14:29 CDT) * assigning variables for representations Vlad Cojocaru (Wed Sep 04 2002 - 07:10:40 CDT) * springs Nguyen Hoang Phuong (Wed Sep 04 2002 - 07:20:00 CDT) * VMD 1.7.1 on HPUX Tobias Mandrup Johansen (Thu Sep 05 2002 - 05:41:31 CDT) * Trouble with tcl script (puts command) J. Rui Rodrigues (Thu Sep 05 2002 - 13:42:20 CDT) * Re: assigning variables for representations John Stone (Thu Sep 05 2002 - 13:53:27 CDT) * Re: springs John Stone (Thu Sep 05 2002 - 13:58:50 CDT) * Re: Trouble with tcl script (puts command) John Stone (Thu Sep 05 2002 - 14:00:11 CDT) * Re: VMD 1.7.1 on HPUX John Stone (Thu Sep 05 2002 - 14:02:38 CDT) * vmd and catdcd Liu, Zhanwu (Fri Sep 06 2002 - 12:43:22 CDT) * Re: vmd and catdcd John Stone (Fri Sep 06 2002 - 14:04:13 CDT) * Re: All that I never took the time to ask about VMD ... John Stone (Fri Sep 06 2002 - 14:51:50 CDT) * Re: VMD and CHARMm format John Stone (Fri Sep 06 2002 - 15:39:07 CDT) * Re: stereo on linux: DTI monitors? Alexander Farley (Sun Sep 08 2002 - 09:36:48 CDT) * Re: Chromium Alexander Farley (Sun Sep 08 2002 - 09:44:58 CDT) * just a test Vlad Cojocaru (Wed Sep 11 2002 - 08:40:47 CDT) * High-Res and Eye 3D glasses and SynthaGram Monitors Jill Vickery (Wed Sep 11 2002 - 13:53:44 CDT) * RE: High-Res and Eye 3D glasses and SynthaGram Monitors Mads Nørregaard-Madsen (Wed Sep 11 2002 - 16:21:37 CDT) * Re: High-Res and Eye 3D glasses and SynthaGram Monitors John Stone (Wed Sep 11 2002 - 17:22:56 CDT) * vrml output Yifei Kong (Wed Sep 11 2002 - 21:04:15 CDT) * Surface calculation Markus Laub (Thu Sep 12 2002 - 11:05:54 CDT) * Surface calculation Markus Laub (Thu Sep 12 2002 - 11:05:54 CDT) * Centre of gravity for movies Mark Hilge (Fri Sep 13 2002 - 12:21:14 CDT) * Drawing atom - atom bonds Yves Frapart (Mon Sep 16 2002 - 11:08:13 CDT) * Re: Drawing atom - atom bonds Justin Gullingsrud (Mon Sep 16 2002 - 09:44:49 CDT) * Re: Surface calculation John Stone (Mon Sep 16 2002 - 11:04:51 CDT) * Re: vrml output John Stone (Mon Sep 16 2002 - 16:02:31 CDT) * Is vmd working in float environment ? Stéphane Teletchéa (Tue Sep 17 2002 - 08:20:13 CDT) * VMD 1.7.1 on HPUX in text mode Tobias Mandrup Johansen (Tue Sep 17 2002 - 08:57:27 CDT) * Re: VMD 1.7.1 on HPUX in text mode John Stone (Tue Sep 17 2002 - 09:31:01 CDT) * Re: Is vmd working in float environment ? John Stone (Tue Sep 17 2002 - 09:37:14 CDT) * Re: Centre of gravity for movies John Stone (Tue Sep 17 2002 - 11:25:07 CDT) * Re: VMD 1.7.1 on HPUX in text mode Tobias Mandrup Johansen (Wed Sep 18 2002 - 02:38:57 CDT) * How to show the strain energies of each atom #WONG CHEE HOW# (Thu Sep 19 2002 - 02:36:27 CDT) * Yes Another HPUX problem Tobias Mandrup Johansen (Thu Sep 19 2002 - 10:04:42 CDT) * Re: Yes Another HPUX problem Justin Gullingsrud (Thu Sep 19 2002 - 10:37:08 CDT) * CDROM/Windows/Linux Surjit Dixit (Thu Sep 19 2002 - 14:35:46 CDT) * Re: CDROM/Windows/Linux John Stone (Thu Sep 19 2002 - 15:16:54 CDT) * Re: CDROM/Windows/Linux Stéphane Teletchéa (Fri Sep 20 2002 - 04:24:12 CDT) * Re: CDROM/Windows/Linux Surjit Dixit (Fri Sep 20 2002 - 07:29:47 CDT) * Re: Native OSX VMD version for 10.2 John Stone (Mon Sep 23 2002 - 15:22:38 CDT) * How to select the interacting atoms between two molecules in two different pdb files Tran Trung Tran (Mon Sep 23 2002 - 19:23:46 CDT) * Menu is missing? Jeroen Akershoek (Tue Sep 24 2002 - 03:31:16 CDT) * Save state miss some parameters ! Stéphane Teletchéa (Tue Sep 24 2002 - 06:55:50 CDT) * Re: Save state miss some parameters ! John Stone (Tue Sep 24 2002 - 09:36:49 CDT) * Re: Menu is missing? John Stone (Tue Sep 24 2002 - 11:09:51 CDT) * Re: multiple structure PDB files John Stone (Tue Sep 24 2002 - 14:19:01 CDT) * Fwd: superimposing molecules John Stone (Tue Sep 24 2002 - 14:23:24 CDT) * Re: How to select the interacting atoms between two molecules in two different pdb files John Stone (Tue Sep 24 2002 - 15:30:25 CDT) * Re: multiple structure PDB files Stéphane Teletchéa (Wed Sep 25 2002 - 03:17:31 CDT) * Re: How to show the strain energies of each atom John Stone (Thu Sep 26 2002 - 16:38:08 CDT) * VMD 1.8a28 bundle for MacOS X 10.2 available... John Stone (Thu Sep 26 2002 - 18:19:18 CDT) * Re: VMD 1.8a28 bundle for MacOS X 10.2 available... MengJuei Hsieh (Fri Sep 27 2002 - 04:18:46 CDT) * Re: VMD 1.8a28 bundle for MacOS X 10.2 available... Mauricio Carrillo Tripp (Fri Sep 27 2002 - 19:22:30 CDT) * Re: VMD 1.8a28 bundle for MacOS X 10.2 available... Justin Gullingsrud (Fri Sep 27 2002 - 19:35:05 CDT) * Re: VRML2.0 John Stone (Tue Oct 01 2002 - 10:05:37 CDT) * quick help jmp17@duke.edu (Wed Oct 02 2002 - 00:48:31 CDT) * Re: quick help John Stone (Wed Oct 02 2002 - 00:54:33 CDT) * H-bond plotting Liu, Zhanwu (Wed Oct 02 2002 - 09:54:38 CDT) * Re: Native OSX VMD version for 10.2 John Stone (Wed Oct 02 2002 - 13:18:51 CDT) * "Pick item mode" inactive in OSX bundle ? Christian Simon (Thu Oct 03 2002 - 07:44:53 CDT) * Re: "Pick item mode" inactive in OSX bundle ? John Stone (Thu Oct 03 2002 - 08:47:32 CDT) * VDW radii ran friedman (Thu Oct 03 2002 - 09:33:30 CDT) * Re: VDW radii John Stone (Thu Oct 03 2002 - 09:39:22 CDT) * Hydrophobicity Markus Laub (Sat Oct 05 2002 - 17:42:20 CDT) * Re: Hydrophobicity Justin Gullingsrud (Sun Oct 06 2002 - 13:37:35 CDT) * Windows XP refresh rate bug/stereo, information page John Stone (Tue Oct 08 2002 - 17:25:08 CDT) * molden xyz movie eric hu (Thu Oct 10 2002 - 17:57:13 CDT) * Re: molden xyz movie B. Bennion (Thu Oct 10 2002 - 18:22:59 CDT) * Re: molden xyz movie eric hu (Thu Oct 10 2002 - 20:27:11 CDT) * Re: molden xyz movie B. Bennion (Fri Oct 11 2002 - 00:40:52 CDT) * MacOSX and the solvate package Evan Thompson (Fri Oct 11 2002 - 20:02:59 CDT) * load molecule made by amber7. Margaret Cheung (Fri Oct 11 2002 - 20:10:35 CDT) * Re: MacOSX and the solvate package John Stone (Fri Oct 11 2002 - 22:48:14 CDT) * Re: load molecule made by amber7. John Stone (Tue Oct 15 2002 - 15:52:00 CDT) * Re: load molecule made by amber7. Margaret Cheung (Tue Oct 15 2002 - 16:14:57 CDT) * XTC files in 1.8a21 Dmitry Kovalsky (Wed Oct 16 2002 - 04:08:30 CDT) * Re: XTC files in 1.8a21 John Stone (Wed Oct 16 2002 - 10:22:41 CDT) * RMS fits Tara Sprules (Wed Oct 16 2002 - 17:34:09 CDT) * solvate documentation. Gadi Oron (Thu Oct 17 2002 - 07:05:06 CDT) * question on prmtop & prmcrd from leap (amber) Sichun Yang (Fri Oct 18 2002 - 16:15:15 CDT) * question on prmtop & prmcrd from leap (amber) Sichun Yang (Fri Oct 18 2002 - 16:17:46 CDT) * Re: question on prmtop & prmcrd from leap (amber) B. Bennion (Fri Oct 18 2002 - 18:13:43 CDT) * Re: RMS fits Dean Johnson (Fri Oct 18 2002 - 23:04:11 CDT) * Antialiasing ? Marc Baaden (Wed Oct 23 2002 - 08:45:22 CDT) * Re: Antialiasing ? John Stone (Wed Oct 23 2002 - 10:07:15 CDT) * Re: Antialiasing ? Stéphane Teletchéa (Thu Oct 24 2002 - 02:16:35 CDT) * Vmd console window colors in Irix 6.5 Ken Sale (Thu Oct 24 2002 - 13:47:03 CDT) * Re: Vmd console window colors in Irix 6.5 John Stone (Thu Oct 24 2002 - 14:31:47 CDT) * carnal output trajectory Vlad Cojocaru (Thu Oct 24 2002 - 15:07:35 CDT) * Re: carnal output trajectory Margaret Cheung (Thu Oct 24 2002 - 15:57:50 CDT) * core dump when launching vmd1.8a21 Margaret Cheung (Thu Oct 24 2002 - 19:49:42 CDT) * Re: core dump when launching vmd1.8a21 John Stone (Thu Oct 24 2002 - 19:55:21 CDT) * Re: core dump when launching vmd1.8a21 B. Bennion (Thu Oct 24 2002 - 20:30:05 CDT) * Re: core dump when launching vmd1.8a21 Margaret Cheung (Thu Oct 24 2002 - 20:31:28 CDT) * Re: core dump when launching vmd1.8a21 John Stone (Thu Oct 24 2002 - 20:36:16 CDT) * Re: core dump when launching vmd1.8a21 Margaret Cheung (Thu Oct 24 2002 - 21:05:30 CDT) * carnal output trajectory Vlad Cojocaru (Fri Oct 25 2002 - 04:50:55 CDT) * Feature request for vmd 1.8 Stéphane Teletchéa (Mon Oct 28 2002 - 04:10:55 CST) * rms dumping in a file Vlad Cojocaru (Mon Oct 28 2002 - 05:16:41 CST) * Re: Feature request for vmd 1.8 Justin Gullingsrud (Mon Oct 28 2002 - 09:53:56 CST) * Re: rms dumping in a file John Stone (Mon Oct 28 2002 - 10:34:44 CST) * vmd checking socket in tcl jen ramus (Mon Oct 28 2002 - 19:30:04 CST) * Re: vmd checking socket in tcl John Stone (Mon Oct 28 2002 - 19:46:12 CST) * Another feature request for vmd 1.8 David Chalmers (Mon Oct 28 2002 - 20:02:15 CST) * hydrogen bonding Y. U. Sasidhar (Mon Oct 28 2002 - 21:52:48 CST) * reference about structure Vlad Cojocaru (Tue Oct 29 2002 - 04:34:57 CST) * Re: reference about structure John Stone (Tue Oct 29 2002 - 09:49:31 CST) * positioning a protein with trans etc. Marc Baaden (Tue Oct 29 2002 - 12:59:56 CST) * Re: positioning a protein with trans etc. John Stone (Tue Oct 29 2002 - 15:56:18 CST) * Gromacs file formats gro, xtc and trr Marc Baaden (Tue Oct 29 2002 - 15:59:38 CST) * Re: positioning a protein with trans etc. Marc Baaden (Tue Oct 29 2002 - 16:02:55 CST) * Re: Gromacs file formats gro, xtc and trr John Stone (Tue Oct 29 2002 - 16:14:37 CST) * helices in coil B. Bennion (Tue Oct 29 2002 - 18:24:13 CST) * Re: positioning a protein with trans etc. Stéphane Teletchéa (Wed Oct 30 2002 - 02:26:36 CST) * Unable to use short loabels Stéphane Teletchéa (Wed Oct 30 2002 - 03:50:01 CST) * Re: positioning a protein with trans etc. Marc Baaden (Wed Oct 30 2002 - 05:33:26 CST) * carnal output trajectory Vlad Cojocaru (Wed Oct 30 2002 - 07:25:36 CST) * Re: carnal output trajectory Stéphane Teletchéa (Wed Oct 30 2002 - 07:50:19 CST) * Re: carnal output trajectory Sanjeev B.S. (Wed Oct 30 2002 - 07:50:45 CST) * Re: positioning a protein with trans etc. John Stone (Wed Oct 30 2002 - 10:02:35 CST) * Re: Unable to use short loabels John Stone (Wed Oct 30 2002 - 10:14:14 CST) * Re: hydrogen bonding John Stone (Wed Oct 30 2002 - 10:37:02 CST) * Re: Another feature request for vmd 1.8 John Stone (Wed Oct 30 2002 - 10:41:11 CST) * Re: helices in coil John Stone (Wed Oct 30 2002 - 10:48:47 CST) * Re: hydrogen bonding Justin Gullingsrud (Wed Oct 30 2002 - 10:54:13 CST) * Re: helices in coil Justin Gullingsrud (Wed Oct 30 2002 - 10:57:34 CST) * Re: positioning a protein with trans etc. Marc Baaden (Wed Oct 30 2002 - 11:52:09 CST) * A vmd bug 1.8a28 Stéphane Teletchéa (Thu Oct 31 2002 - 08:01:34 CST) * xyz movie eric hu (Thu Oct 31 2002 - 17:58:15 CST) * Re: xyz movie John Stone (Thu Oct 31 2002 - 19:56:59 CST) * Coloring of atoms/molecules #WONG CHEE HOW# (Thu Oct 31 2002 - 23:24:13 CST) * VMD 1.8 alpha 29 available for testing! John Stone (Fri Nov 01 2002 - 17:52:09 CST) * Re: Coloring of atoms/molecules John Stone (Fri Nov 01 2002 - 21:18:42 CST) * RE: VMD 1.8 alpha 29 available for testing! #WONG CHEE HOW# (Fri Nov 01 2002 - 22:47:01 CST) * RE: VMD 1.8 alpha 29 available for testing! #WONG CHEE HOW# (Fri Nov 01 2002 - 22:48:10 CST) * Re: VMD 1.8 alpha 29 available for testing! John Stone (Sat Nov 02 2002 - 00:25:51 CST) * Re: VMD 1.8 alpha 29 available for testing! Marc Baaden (Mon Nov 04 2002 - 10:41:30 CST) * Re: VMD 1.8 alpha 29 available for testing! John Stone (Mon Nov 04 2002 - 10:51:34 CST) * AMBER6 format MengJuei Hsieh (Mon Nov 04 2002 - 14:39:52 CST) * Re: AMBER6 format John Stone (Mon Nov 04 2002 - 14:56:12 CST) * vmd runs slowly on vmware jen ramus (Mon Nov 04 2002 - 17:05:14 CST) * Re: AMBER6 format MengJuei Hsieh (Mon Nov 04 2002 - 17:22:44 CST) * Re: vmd runs slowly on vmware John Stone (Mon Nov 04 2002 - 18:31:54 CST) * Re: vmd runs slowly on vmware MengJuei Hsieh (Mon Nov 04 2002 - 18:51:35 CST) * Re: command args to MSMS in VMD John Stone (Tue Nov 05 2002 - 10:27:26 CST) * Re: Display size in VMD 1.8a29 for OS X John Stone (Tue Nov 05 2002 - 10:41:46 CST) * Postdoctoral positions in Australia Brendan O'Malley (Wed Nov 06 2002 - 04:55:13 CST) * No stereo mode in vmd -dispdev none ?? Marc Baaden (Wed Nov 06 2002 - 07:15:03 CST) * Labels 'springs' in labels form Stéphane Teletchéa (Wed Nov 06 2002 - 07:44:24 CST) * Re: VMD 1.8 alpha 29 available for testing! John Stone (Wed Nov 06 2002 - 14:40:16 CST) * animation with PDBs Ross J. Toedte (Thu Nov 07 2002 - 10:10:09 CST) * Re: animation with PDBs John Stone (Thu Nov 07 2002 - 10:33:26 CST) * [mjd@dti3d.com: Re: VMD 1.8 alpha 29 available for testing!] John Stone (Thu Nov 07 2002 - 15:11:38 CST) * Re: No stereo mode in vmd -dispdev none ?? John Stone (Thu Nov 07 2002 - 16:46:02 CST) * Beta color of atoms #WONG CHEE HOW# (Thu Nov 07 2002 - 19:57:26 CST) * sources Dmitry Kovalsky (Fri Nov 08 2002 - 06:39:40 CST) * Re: sources John Stone (Fri Nov 08 2002 - 11:36:08 CST) * Re: Beta color of atoms John Stone (Fri Nov 08 2002 - 11:38:47 CST) * Stereo quality and Save State Problems Jill Vickery (Fri Nov 08 2002 - 14:07:46 CST) * Re: Stereo quality and Save State Problems John Stone (Fri Nov 08 2002 - 14:36:04 CST) * alignment and rmsd fit Marcela Madrid (Fri Nov 08 2002 - 16:16:38 CST) * Re: alignment and rmsd fit John Stone (Fri Nov 08 2002 - 17:00:06 CST) * Re: Labels 'springs' in labels form John Stone (Fri Nov 08 2002 - 17:33:21 CST) * Problems with color #WONG CHEE HOW# (Mon Nov 11 2002 - 09:52:17 CST) * Re: Problems with color John Stone (Mon Nov 11 2002 - 10:07:57 CST) * How to add atoms to a molecule? Paul Darwen (Tue Nov 12 2002 - 22:39:53 CST) * mpeg movie from trajectory Vlad Cojocaru (Wed Nov 13 2002 - 04:39:26 CST) * Re: mpeg movie from trajectory Stéphane Teletchéa (Wed Nov 13 2002 - 06:21:04 CST) * cartoon representation stefano ricagno (Wed Nov 13 2002 - 06:27:33 CST) * Re: mpeg movie from trajectory John Stone (Wed Nov 13 2002 - 09:38:49 CST) * Re: mpeg movie from trajectory John Stone (Wed Nov 13 2002 - 09:40:41 CST) * CRD problems and CRD to DCD conversion Mark Zottola - Contractor (Wed Nov 13 2002 - 14:59:33 CST) * Re: CRD problems and CRD to DCD conversion John Stone (Wed Nov 13 2002 - 15:06:39 CST) * Re: CRD problems and CRD to DCD conversion B. Bennion (Wed Nov 13 2002 - 15:48:57 CST) * Re: CRD problems and CRD to DCD conversion Mark Zottola - Contractor (Wed Nov 13 2002 - 16:04:39 CST) * avoiding distance based bond search when reading a PDB file Christophe Guilbert (Thu Nov 14 2002 - 14:31:17 CST) * Re: avoiding distance based bond search when reading a PDB file John Stone (Thu Nov 14 2002 - 15:25:53 CST) * Re: cartoon representation John Stone (Thu Nov 14 2002 - 16:02:48 CST) * Re: cartoon representation Robert Campbell (Fri Nov 15 2002 - 09:58:02 CST) * Re: cartoon representation John Stone (Fri Nov 15 2002 - 09:58:43 CST) * Maintaining original coordinates from PDB ? Marc Baaden (Sun Nov 17 2002 - 14:52:15 CST) * Re: AMBER6 format John Stone (Mon Nov 18 2002 - 00:20:19 CST) * MacOS X window resizing fix... John Stone (Mon Nov 18 2002 - 00:21:53 CST) * Re: How to add atoms to a molecule? John Stone (Mon Nov 18 2002 - 00:35:43 CST) * Re: Maintaining original coordinates from PDB ? John Stone (Mon Nov 18 2002 - 09:54:24 CST) * VMD 1.8 beta 2 available for testing! John Stone (Mon Nov 18 2002 - 17:01:35 CST) * Re: AMBER6 format MengJuei Hsieh (Tue Nov 19 2002 - 16:02:55 CST) * New AMBER 7 file reader plugin, testers needed :-) John Stone (Wed Nov 20 2002 - 13:23:32 CST) * A very minor question on the MacOS X native bundle version MengJuei Hsieh (Fri Nov 22 2002 - 19:53:57 CST) * Re: New AMBER 7 file reader plugin, testers needed :-) MengJuei Hsieh (Fri Nov 22 2002 - 19:58:10 CST) * Re: A very minor question on the MacOS X native bundle version John Stone (Sun Nov 24 2002 - 20:43:06 CST) * Using Magellan Spacemouse with VMD srtlscao (Mon Nov 25 2002 - 08:38:46 CST) * beta version Sanjeev B.S. (Tue Nov 26 2002 - 01:35:28 CST) * speed prob Sanjeev B.S. (Tue Nov 26 2002 - 03:14:14 CST) * breaking the last bond when loading Vlad Cojocaru (Tue Nov 26 2002 - 07:24:59 CST) * Re: breaking the last bond when loading John Stone (Tue Nov 26 2002 - 09:34:35 CST) * Raytracing with tachyon/povray because of pb with raster3d Marc Baaden (Tue Nov 26 2002 - 10:47:22 CST) * Re: breaking the last bond when loading John Stone (Tue Nov 26 2002 - 11:06:20 CST) * Re: Raytracing with tachyon/povray because of pb with raster3d John Stone (Tue Nov 26 2002 - 11:17:33 CST) * Re: Raytracing with tachyon/povray because of pb with raster3d Bogdan Costescu (Tue Nov 26 2002 - 11:41:38 CST) * Re: Raytracing with tachyon/povray because of pb with raster3d Marc Baaden (Tue Nov 26 2002 - 12:02:51 CST) * Re: Raytracing with tachyon/povray because of pb with raster3d Bogdan Costescu (Tue Nov 26 2002 - 12:58:40 CST) * Re: Raytracing with tachyon/povray because of pb with raster3d John Stone (Tue Nov 26 2002 - 13:11:26 CST) * Re: Raytracing with tachyon/povray because of pb with raster3d John Stone (Tue Nov 26 2002 - 13:34:38 CST) * Re: Using Magellan Spacemouse with VMD John Stone (Tue Nov 26 2002 - 14:49:38 CST) * VMD 1.8 beta 6 Unix binaries available... John Stone (Tue Nov 26 2002 - 16:16:16 CST) * unix -vmd Ioana Cozmuta (Tue Nov 26 2002 - 17:29:25 CST) * Re: unix -vmd John Stone (Tue Nov 26 2002 - 17:39:34 CST) * Re: A very minor question on the MacOS X native bundle version MengJuei Hsieh (Wed Nov 27 2002 - 01:28:08 CST) * polar coordinates Peter VARNAI (Wed Nov 27 2002 - 11:52:10 CST) * Re: polar coordinates John Stone (Wed Nov 27 2002 - 12:34:10 CST) * can VMD display a box? Minerva Gonzalez (Thu Nov 28 2002 - 12:23:15 CST) * Re: can VMD display a box? Marc Baaden (Thu Nov 28 2002 - 07:26:05 CST) * draw a vector Nguyen Hoang Phuong (Thu Nov 28 2002 - 07:59:56 CST) * dti monitor linux Peter Tieleman (Fri Nov 29 2002 - 15:12:58 CST) * Re: dti monitor linux John Stone (Fri Nov 29 2002 - 15:58:59 CST) * Fwd: GROMOS to AMBER and reverse John Stone (Fri Nov 29 2002 - 23:23:53 CST) * Re: draw a vector John Stone (Sat Nov 30 2002 - 15:17:39 CST) * hbonds during trajectorywith vmd 1.8beta Vlad Cojocaru (Mon Dec 02 2002 - 03:05:44 CST) * Fitting simple geometric objects to a molecule ? Marc Baaden (Mon Dec 02 2002 - 04:59:11 CST) * Re: hbonds during trajectorywith vmd 1.8beta Justin Gullingsrud (Mon Dec 02 2002 - 09:15:20 CST) * Re: Fitting simple geometric objects to a molecule ? Justin Gullingsrud (Mon Dec 02 2002 - 09:19:55 CST) * Re: hbonds during trajectorywith vmd 1.8beta Vlad Cojocaru (Tue Dec 03 2002 - 04:05:59 CST) * converting Vlad Cojocaru (Wed Dec 04 2002 - 16:04:06 CST) * Re: converting John Stone (Wed Dec 04 2002 - 16:16:22 CST) * rotate a molecule eric hu (Thu Dec 05 2002 - 17:09:28 CST) * Re: rotate a molecule John Stone (Thu Dec 05 2002 - 17:12:33 CST) * Re: 3D printing John Stone (Fri Dec 06 2002 - 16:17:24 CST) * interatomic distances Vlad Cojocaru (Mon Dec 09 2002 - 07:59:30 CST) * Re: interatomic distances Justin Gullingsrud (Mon Dec 09 2002 - 14:33:43 CST) * Announce: VMD 1.8 is available! John Stone (Mon Dec 09 2002 - 15:22:28 CST) * Empty Extension menu on OSX Pascal Mercier (Mon Dec 09 2002 - 17:24:52 CST) * Re: Empty Extension menu on OSX John Stone (Mon Dec 09 2002 - 17:35:32 CST) * Tachyon VMD and MPI Cesar Delgado (Mon Dec 09 2002 - 18:25:19 CST) * Re: Tachyon VMD and MPI John Stone (Mon Dec 09 2002 - 18:47:57 CST) * Loading XYZ trajectory file #WONG CHEE HOW# (Mon Dec 09 2002 - 19:17:00 CST) * Re: Loading XYZ trajectory file John Stone (Tue Dec 10 2002 - 12:39:23 CST) * Re: Loading multiple PDB files in VMD 1.8 John Stone (Tue Dec 10 2002 - 18:02:39 CST) * smoothing from the command line Vlad Cojocaru (Fri Dec 13 2002 - 08:55:17 CST) * pdb format Ioana Cozmuta (Fri Dec 13 2002 - 20:23:17 CST) * Re: pdb format Justin Gullingsrud (Sun Dec 15 2002 - 23:07:05 CST) * Re: smoothing from the command line Justin Gullingsrud (Sun Dec 15 2002 - 23:20:12 CST) * saving a tiff file Marcela Madrid (Mon Dec 16 2002 - 15:01:30 CST) * Building VMD on windows 2000 B. Bennion (Mon Dec 16 2002 - 15:35:51 CST) * BioCoRE Release: New Features Robert Brunner (Mon Dec 16 2002 - 17:04:02 CST) * Re: saving a tiff file John Stone (Mon Dec 16 2002 - 17:43:51 CST) * surface problems Tyler Luchko (Mon Dec 16 2002 - 18:48:45 CST) * Re: saving a tiff file Robert Brunner (Mon Dec 16 2002 - 20:01:02 CST) * rendering from VMD Marcela Madrid (Tue Dec 17 2002 - 13:58:57 CST) * Re: rendering from VMD B. Bennion (Tue Dec 17 2002 - 14:36:07 CST) * Re: rendering from VMD Marcela Madrid (Tue Dec 17 2002 - 15:53:41 CST) * Re: rendering from VMD B. Bennion (Tue Dec 17 2002 - 15:56:45 CST) * Re: saving a tiff file John Stone (Tue Dec 17 2002 - 16:36:56 CST) * amber trajectory Ioana Cozmuta (Tue Dec 17 2002 - 23:15:55 CST) * Re: amber trajectory John Stone (Tue Dec 17 2002 - 23:44:51 CST) * Re: saving a tiff file Dr. Daniel James White PhD (Wed Dec 18 2002 - 05:16:45 CST) * Re: surface problems John Stone (Wed Dec 18 2002 - 09:11:52 CST) * vmd version 1.8 Ioana Cozmuta (Wed Dec 18 2002 - 14:42:20 CST) * Re: vmd version 1.8 John Stone (Wed Dec 18 2002 - 14:46:11 CST) * water model Ioana Cozmuta (Wed Dec 18 2002 - 19:56:03 CST) * Re: water model Justin Gullingsrud (Wed Dec 18 2002 - 21:59:12 CST) * STL format file - rendering alarcon@lncc.br (Thu Dec 19 2002 - 13:39:20 CST) * Re: STL format file - rendering John Stone (Thu Dec 19 2002 - 15:34:41 CST) * Stereo VMD jwc@itsa.ucsf.edu (Tue Dec 24 2002 - 18:24:51 CST) * Re: Stereo VMD MengJuei Hsieh (Thu Dec 26 2002 - 03:26:35 CST) * Re: Stereo VMD jwc@itsa.ucsf.edu (Thu Dec 26 2002 - 11:32:16 CST) * Re: Stereo VMD John Stone (Thu Dec 26 2002 - 15:40:43 CST) * creating spherical water droplet Rukman Hertadi (Thu Dec 26 2002 - 19:41:52 CST) * Re: creating spherical water droplet Justin Gullingsrud (Fri Dec 27 2002 - 09:46:09 CST) * VMD Representation Sichun Yang (Sun Dec 29 2002 - 14:55:12 CST) * VMD Representation (addition) Sichun Yang (Sun Dec 29 2002 - 15:16:32 CST) * Re: VMD Representation (addition) Justin Gullingsrud (Sun Dec 29 2002 - 19:22:03 CST) * hydrophobicity on the Connolly surface Denys Bashtovyy (Thu Jan 02 2003 - 07:04:10 CST) * Re: hydrophobicity on the Connolly surface John Stone (Thu Jan 02 2003 - 10:33:33 CST) * Cylindrical water box Liu, Zhanwu (Fri Jan 03 2003 - 08:49:53 CST) * stereo display on NVIDIA Quadro4 750 XGL Karsten Suhre (Tue Jan 07 2003 - 05:32:22 CST) * Re: stereo display on NVIDIA Quadro4 750 XGL John Stone (Tue Jan 07 2003 - 09:42:35 CST) * Re: stereo display on NVIDIA Quadro4 750 XGL Magnus Kreth (Mon Jan 13 2003 - 09:32:28 CST) * Re: stereo display on NVIDIA Quadro4 750 XGL John Stone (Mon Jan 13 2003 - 17:14:06 CST) * problems with stereo display on NVIDIA Quadro4 750 XGL Karsten Suhre (Tue Jan 14 2003 - 02:12:49 CST) * movie from amber traj eric hu (Tue Jan 14 2003 - 12:46:38 CST) * Re: movie from amber traj John Stone (Tue Jan 14 2003 - 13:02:30 CST) * [ARitger@nvidia.com: Re: problems with stereo display on NVIDIA Quadro4 750 XGL] John Stone (Tue Jan 14 2003 - 13:07:58 CST) * Maximum number of atoms/bonds #WONG CHEE HOW# (Tue Jan 14 2003 - 19:04:54 CST) * solvate option in vmd Ioana Cozmuta (Tue Jan 14 2003 - 20:05:46 CST) * Re: solvate option in vmd John Stone (Wed Jan 15 2003 - 10:29:36 CST) * Re: Maximum number of atoms/bonds John Stone (Wed Jan 15 2003 - 10:33:03 CST) * SCRIPT directory... Sanjeev B.S. (Wed Jan 15 2003 - 11:46:56 CST) * Re: SCRIPT directory... John Stone (Wed Jan 15 2003 - 11:47:47 CST) * pdb files in VMD/NAMD TUTORIAL Ioana Cozmuta (Wed Jan 15 2003 - 21:52:27 CST) * Re: SCRIPT directory... gianluca santarossa (Thu Jan 16 2003 - 04:10:48 CST) * Re: pdb files in VMD/NAMD TUTORIAL John Stone (Thu Jan 16 2003 - 15:11:53 CST) * SHAKE/namd Ioana Cozmuta (Thu Jan 16 2003 - 20:20:05 CST) * Re: SHAKE/namd John Stone (Thu Jan 16 2003 - 20:54:37 CST) * Cl ions Ioana Cozmuta (Thu Jan 16 2003 - 21:05:34 CST) * Re: SHAKE/namd Justin Gullingsrud (Thu Jan 16 2003 - 23:23:33 CST) * Re: Cl ions Justin Gullingsrud (Thu Jan 16 2003 - 23:26:37 CST) * 20 colors for 20 amino acids! Dr Nick (Fri Jan 17 2003 - 11:23:28 CST) * bug? Ioana Cozmuta (Fri Jan 17 2003 - 22:08:41 CST) * aligntool docs?... Joshua Speidel (Tue Jan 21 2003 - 15:03:36 CST) * Re: aligntool docs?... John Stone (Tue Jan 21 2003 - 15:36:56 CST) * Re: Tachyon VMD and MPI John Stone (Tue Jan 21 2003 - 15:44:11 CST) * Re: 20 colors for 20 amino acids! John Stone (Wed Jan 22 2003 - 10:13:30 CST) * Surfaces/Cavities phubbard@post.its.mcw.edu (Wed Jan 22 2003 - 14:01:37 CST) * Re: Surfaces/Cavities John Stone (Wed Jan 22 2003 - 14:16:49 CST) * Re: Surfaces/Cavities phubbard@post.its.mcw.edu (Wed Jan 22 2003 - 14:45:36 CST) * Re: Surfaces/Cavities John Stone (Wed Jan 22 2003 - 14:56:05 CST) * RE: Surfaces/Cavities Liu, Zhanwu (Wed Jan 22 2003 - 15:37:35 CST) * RE: Surfaces/Cavities phubbard@post.its.mcw.edu (Wed Jan 22 2003 - 16:04:25 CST) * 2 more quick questions phubbard@post.its.mcw.edu (Wed Jan 22 2003 - 17:53:54 CST) * Re: 2 more quick questions John Stone (Wed Jan 22 2003 - 18:18:30 CST) * Re: Surfaces/Cavities gianluca santarossa (Thu Jan 23 2003 - 03:17:41 CST) * Re: Surfaces/Cavities Alan Wilter Sousa da Silva (Thu Jan 23 2003 - 06:21:18 CST) * Re: Surfaces/Cavities John Stone (Thu Jan 23 2003 - 09:42:38 CST) * visualizing Delphi output (electrostatic potential) Vlad Cojocaru (Thu Jan 23 2003 - 10:08:51 CST) * Re: visualizing Delphi output (electrostatic potential) John Stone (Thu Jan 23 2003 - 10:23:09 CST) * [jrui@ci.uc.pt: Re: visualizing Delphi output (electrostatic potential)] John Stone (Thu Jan 23 2003 - 14:37:36 CST) * cylindrical water Rukman Hertadi (Fri Jan 24 2003 - 04:22:28 CST) * Stereo mode on NVidia/Win2000 Michael Redmond (Fri Jan 24 2003 - 09:29:55 CST) * Re: Stereo mode on NVidia/Win2000 John Stone (Fri Jan 24 2003 - 10:20:10 CST) * RE: Stereo mode on NVidia/Win2000 DeLano, Warren (Fri Jan 24 2003 - 13:44:14 CST) * RE: Stereo mode on NVidia/Win2000 Michael Redmond (Fri Jan 24 2003 - 13:54:26 CST) * Re: Stereo mode on NVidia/Win2000 John Stone (Fri Jan 24 2003 - 14:01:55 CST) * Re: Stereo mode on NVidia/Win2000 John Stone (Fri Jan 24 2003 - 14:18:32 CST) * Re: Stereo mode on NVidia/Win2000 Michael Redmond (Fri Jan 24 2003 - 14:43:16 CST) * Re: Stereo mode on NVidia/Win2000 John Stone (Fri Jan 24 2003 - 17:58:35 CST) * hard ware stereo Y. U. Sasidhar (Sun Jan 26 2003 - 08:48:18 CST) * Re: hard ware stereo MJR (Sun Jan 26 2003 - 21:14:35 CST) * Re: hard ware stereo Dr. Daniel James White PhD (Mon Jan 27 2003 - 04:14:09 CST) * Re: Stereo mode on NVidia/Win2000 John Stone (Mon Jan 27 2003 - 22:54:53 CST) * compiling vmd... Lubos Vrbka (Tue Jan 28 2003 - 04:54:00 CST) * Re: compiling vmd... John Stone (Tue Jan 28 2003 - 09:39:36 CST) * Re: compiling vmd... B. Bennion (Tue Jan 28 2003 - 10:09:33 CST) * FYI: (for OSX version) a document about shell script and applescript MengJuei Hsieh (Tue Jan 28 2003 - 17:13:41 CST) * initial run by vmd on loading a trajectory Dr. Y. U. Sasidhar (Tue Jan 28 2003 - 22:58:17 CST) * Re: initial run by vmd on loading a trajectory Mikko Huhtala (Wed Jan 29 2003 - 02:28:56 CST) * Re: initial run by vmd on loading a trajectory Justin Gullingsrud (Wed Jan 29 2003 - 09:07:29 CST) * mol volume J. Rui Rodrigues (Wed Jan 29 2003 - 10:17:30 CST) * Re: mol volume John Stone (Wed Jan 29 2003 - 13:51:23 CST) * Re: initial run by vmd on loading a trajectory Dr. Y. U. Sasidhar (Thu Jan 30 2003 - 05:32:53 CST) * [OT] pdb files with lots of residues gianluca santarossa (Thu Jan 30 2003 - 09:10:23 CST) * Re: [OT] pdb files with lots of residues Jim Phillips (Thu Jan 30 2003 - 09:21:37 CST) * Re: [PyMOL] 3D on linux (fwd) Eugen Leitl (Thu Jan 30 2003 - 09:40:15 CST) * Re: [OT] pdb files with lots of residues Justin Gullingsrud (Thu Jan 30 2003 - 09:45:07 CST) * Re: save_state John Stone (Thu Jan 30 2003 - 13:28:24 CST) * SASA Rukman Hertadi (Fri Jan 31 2003 - 03:59:16 CST) * Re: SASA John Stone (Fri Jan 31 2003 - 10:24:41 CST) * Bugfix: new save_state.tcl for VMD 1.8 installations... John Stone (Fri Jan 31 2003 - 14:02:44 CST) * different colors Luca UvA (Tue Feb 04 2003 - 04:50:40 CST) * python: packages not found Oliver Beckstein (Tue Feb 04 2003 - 09:45:46 CST) * python: readline support Oliver Beckstein (Tue Feb 04 2003 - 09:47:13 CST) * remote control (fifo/socket) ? Oliver Beckstein (Tue Feb 04 2003 - 09:58:54 CST) * Re: different colors John Stone (Tue Feb 04 2003 - 10:01:19 CST) * Re: remote control (fifo/socket) ? John Stone (Tue Feb 04 2003 - 10:08:06 CST) * Re: python: packages not found Justin Gullingsrud (Tue Feb 04 2003 - 10:50:35 CST) * VMD 1.8 problems with AMBER parm and crd file Yongmei Wang (Tue Feb 04 2003 - 14:57:18 CST) * Re: VMD 1.8 problems with AMBER parm and crd file John Stone (Tue Feb 04 2003 - 15:00:55 CST) * Re: VMD 1.8 problems with AMBER parm and crd file John Stone (Tue Feb 04 2003 - 15:29:38 CST) * Re: VMD 1.8 problems with AMBER parm and crd file Lubos Vrbka (Wed Feb 05 2003 - 02:21:25 CST) * Re: VMD 1.8 problems with AMBER parm and crd file Vlad Cojocaru (Wed Feb 05 2003 - 04:32:32 CST) * Re: VMD 1.8 problems with AMBER parm and crd file John Stone (Wed Feb 05 2003 - 09:33:25 CST) * Re: VMD 1.8 problems with AMBER parm and crd file Lubos Vrbka (Wed Feb 05 2003 - 09:19:41 CST) * PNY Quadro4 980XGL Card Jill Vickery (Wed Feb 05 2003 - 11:47:55 CST) * Re: PNY Quadro4 980XGL Card John Stone (Wed Feb 05 2003 - 12:40:35 CST) * Pls help me to render files with only traces of proteins! Margaret Cheung (Wed Feb 05 2003 - 19:06:41 CST) * Re: Pls help me to render files with only traces of proteins! John Stone (Wed Feb 05 2003 - 19:28:31 CST) * Re: Pls help me to render files with only traces of proteins! Margaret Cheung (Wed Feb 05 2003 - 19:48:33 CST) * Re: Pls help me to render files with only traces of proteins! B. Bennion (Wed Feb 05 2003 - 21:13:34 CST) * Re: Pls help me to render files with only traces of proteins! Margaret Cheung (Wed Feb 05 2003 - 23:41:50 CST) * different colors Luca UvA (Thu Feb 06 2003 - 05:04:21 CST) * Compiling VMD-1.8 as a loadable python module Lars Bruno Hansen (Thu Feb 06 2003 - 06:15:02 CST) * Re: Compiling VMD-1.8 as a loadable python module Justin Gullingsrud (Thu Feb 06 2003 - 10:55:14 CST) * Re: Pls help me to render files with only traces of proteins! John Stone (Thu Feb 06 2003 - 10:51:46 CST) * Re: Pls help me to render files with only traces of proteins! John Stone (Thu Feb 06 2003 - 10:53:38 CST) * Re: Pls help me to render files with only traces of proteins! Margaret Cheung (Thu Feb 06 2003 - 11:12:19 CST) * Re: Pls help me to render files with only traces of proteins! B. Bennion (Thu Feb 06 2003 - 13:23:01 CST) * [tripp@fis.unam.mx: Re: Pls help me to render files with only traces of proteins!] John Stone (Thu Feb 06 2003 - 13:55:43 CST) * Re: Pls help me to render files with only traces of proteins! Mauricio Carrillo Tripp (Thu Feb 06 2003 - 08:06:38 CST) * install of new VMD 1.8 Yongmei Wang (Thu Feb 06 2003 - 15:56:44 CST) * Re: install of new VMD 1.8 John Stone (Thu Feb 06 2003 - 17:27:38 CST) * Making VMD movies Sanjeev B.S. (Sun Feb 09 2003 - 23:06:00 CST) * Re: Making VMD movies John Stone (Sun Feb 09 2003 - 23:05:20 CST) * Re: Making VMD movies Sanjeev B.S. (Sun Feb 09 2003 - 23:41:57 CST) * Re: Making VMD movies John Stone (Sun Feb 09 2003 - 23:33:23 CST) * Re: Making VMD movies Sanjeev B.S. (Mon Feb 10 2003 - 00:34:58 CST) * Python callbacks Lars Bruno Hansen (Mon Feb 10 2003 - 04:03:58 CST) * plug-in for multiple frame xyz files Luca UvA (Mon Feb 10 2003 - 04:17:08 CST) * Re: Python callbacks Justin Gullingsrud (Mon Feb 10 2003 - 10:47:37 CST) * Re: Making VMD movies John Stone (Mon Feb 10 2003 - 12:22:39 CST) * Re: plug-in for multiple frame xyz files John Stone (Mon Feb 10 2003 - 14:32:39 CST) * rna pdb file Ioana Cozmuta (Wed Feb 12 2003 - 16:03:29 CST) * Re: rna pdb file John Stone (Wed Feb 12 2003 - 16:08:55 CST) * remote_ctl.tcl: VMD's stdout -> socket ? Oliver Beckstein (Wed Feb 12 2003 - 16:10:04 CST) * Re: remote_ctl.tcl: VMD's stdout -> socket ? Justin Gullingsrud (Wed Feb 12 2003 - 16:43:19 CST) * Re: remote_ctl.tcl: VMD's stdout -> socket ? Justin Gullingsrud (Wed Feb 12 2003 - 16:46:36 CST) * Re: rna pdb file Ioana Cozmuta (Wed Feb 12 2003 - 16:52:32 CST) * Re: remote_ctl.tcl: VMD's stdout -> socket ? Oliver Beckstein (Wed Feb 12 2003 - 17:22:38 CST) * New user questions Michele Andrews - Contractor (Thu Feb 13 2003 - 11:11:16 CST) * Re: New user questions Justin Gullingsrud (Thu Feb 13 2003 - 12:29:00 CST) * Re: New user questions John Stone (Thu Feb 13 2003 - 13:54:00 CST) * Re: rna pdb file John Stone (Thu Feb 13 2003 - 14:13:58 CST) * Re: New user questions Michele Andrews - Contractor (Thu Feb 13 2003 - 14:52:35 CST) * aligntool Ioana Cozmuta (Thu Feb 13 2003 - 17:43:44 CST) * Re: aligntool Barry Isralewitz (Thu Feb 13 2003 - 19:33:38 CST) * Fwd: Postdoctoral position available in Molecular Modeling John Stone (Fri Feb 14 2003 - 13:27:31 CST) * Announce: Updated VMD 1.8 plugins available John Stone (Fri Feb 14 2003 - 16:47:39 CST) * Quick question about 3-letter codes for positive residues Paul Darwen (Wed Feb 19 2003 - 01:58:36 CST) * Re: Quick question about 3-letter codes for positive residues Justin Gullingsrud (Wed Feb 19 2003 - 09:16:52 CST) * making movie SGI Ioana Cozmuta (Fri Feb 21 2003 - 15:28:16 CST) * Re: making movie SGI John Stone (Fri Feb 21 2003 - 15:37:25 CST) * Updating colors at each trajectory step Paul Tangney (Sun Feb 23 2003 - 20:34:51 CST) * Problems loading shared object, vmd1.8 linux mesa binaries Christopher D. Wassman (Sun Feb 23 2003 - 21:59:24 CST) * Re: Updating colors at each trajectory step John Stone (Mon Feb 24 2003 - 10:49:00 CST) * Re: Problems loading shared object, vmd1.8 linux mesa binaries John Stone (Mon Feb 24 2003 - 11:28:14 CST) * multiple cells representation Ioana Cozmuta (Mon Feb 24 2003 - 19:19:32 CST) * Re: multiple cells representation Justin Gullingsrud (Mon Feb 24 2003 - 20:31:07 CST) * Re: multiple cells representation John Stone (Mon Feb 24 2003 - 22:04:47 CST) * Re: Problems loading shared object, vmd1.8 linux mesa binaries Christopher D. Wassman (Tue Feb 25 2003 - 01:49:09 CST) * same view in VMD and Molscript Eckhart Guthöhrlein (Tue Feb 25 2003 - 10:22:10 CST) * Re: same view in VMD and Molscript John Stone (Tue Feb 25 2003 - 15:08:47 CST) * Re: Protein Reorientation Gemma Kinsella (Mon Mar 03 2003 - 08:39:51 CST) * Suggested graphic card :: LINUX Joseph Edward Curtis (Mon Mar 03 2003 - 10:07:19 CST) * Re: Suggested graphic card :: LINUX John Stone (Mon Mar 03 2003 - 10:51:31 CST) * trajectory movie Ioana Cozmuta (Mon Mar 03 2003 - 17:11:02 CST) * trajectory/movie Ioana Cozmuta (Mon Mar 03 2003 - 17:13:55 CST) * Re: Suggested graphic card :: LINUX Dr. Daniel James White PhD (Tue Mar 04 2003 - 02:31:52 CST) * Re: Suggested graphic card :: LINUX Tru Huynh (Tue Mar 04 2003 - 05:47:59 CST) * CatDCD Question Saladino, Alex (Tue Mar 04 2003 - 11:51:10 CST) * 'topology' command crashes vmd 1.8 (LINUX) Patrick Ladam (Wed Mar 05 2003 - 06:22:43 CST) * Re: 'topology' command crashes vmd 1.8 (LINUX) John Stone (Wed Mar 05 2003 - 09:57:56 CST) * residue labels in vmd Jim Caldwell (Wed Mar 05 2003 - 18:59:03 CST) * problems with the Surf... Lubos Vrbka (Thu Mar 06 2003 - 10:00:38 CST) * Re: residue labels in vmd John Stone (Thu Mar 06 2003 - 10:05:37 CST) * Re: problems with the Surf... John Stone (Thu Mar 06 2003 - 10:07:23 CST) * Re: problems with the Surf... John Stone (Thu Mar 06 2003 - 10:18:30 CST) * Re: problems with the Surf... Lubos Vrbka (Thu Mar 06 2003 - 10:36:08 CST) * Re: Protein Reorientation John Stone (Thu Mar 06 2003 - 10:52:52 CST) * two molecules Matt Whorton (Thu Mar 06 2003 - 12:20:32 CST) * Re: two molecules John Stone (Thu Mar 06 2003 - 12:30:12 CST) * volume problems Klaus Kramer (Thu Mar 06 2003 - 12:56:57 CST) * Re: volume problems John Stone (Thu Mar 06 2003 - 13:42:53 CST) * Re: two molecules Sichun Yang (Thu Mar 06 2003 - 14:33:17 CST) * Re: two molecules John Stone (Thu Mar 06 2003 - 14:38:49 CST) * Re: Backspace and delete John Stone (Thu Mar 06 2003 - 18:46:50 CST) * question on Force Ioana Cozmuta (Thu Mar 06 2003 - 21:59:48 CST) * msms question... Lubos Vrbka (Fri Mar 07 2003 - 07:48:17 CST) * Re: msms question... John Stone (Fri Mar 07 2003 - 09:40:43 CST) * Re: msms question... Lubos Vrbka (Fri Mar 07 2003 - 11:04:44 CST) * Re: msms question... John Stone (Fri Mar 07 2003 - 17:00:41 CST) * Massive Inventory Clearance Sale on DTI 2D/3D 18.1" Flat Panel Displays! Mike Doolin (Fri Mar 07 2003 - 18:43:27 CST) * Trasperent images Sanjeev B.S. (Mon Mar 10 2003 - 22:18:43 CST) * bond connectivity for different frames Lars Bruno Hansen (Tue Mar 11 2003 - 10:16:38 CST) * Re: bond connectivity for different frames John Stone (Tue Mar 11 2003 - 10:26:52 CST) * Re: atom velocity arrows John Stone (Wed Mar 12 2003 - 13:45:21 CST) * Re: Trasperent images John Stone (Wed Mar 12 2003 - 13:53:32 CST) * Re: question on Force John Stone (Wed Mar 12 2003 - 14:27:54 CST) * Re: question on Force Ioana Cozmuta (Wed Mar 12 2003 - 14:36:26 CST) * Re: stereo display on NVIDIA Quadro4 750 XGL John Stone (Wed Mar 12 2003 - 15:01:15 CST) * Re: atom velocity arrows John Stone (Wed Mar 12 2003 - 15:24:31 CST) * Re: question on Force John Stone (Wed Mar 12 2003 - 17:18:12 CST) * Re: problems with the Surf... John Stone (Fri Mar 14 2003 - 11:09:15 CST) * AMBER parmfiles Patrick Ladam (Mon Mar 17 2003 - 05:24:31 CST) * Re: AMBER parmfiles John Stone (Mon Mar 17 2003 - 10:06:11 CST) * atomselect B. Bennion (Tue Mar 18 2003 - 16:03:05 CST) * Re: atomselect Justin Gullingsrud (Tue Mar 18 2003 - 16:19:36 CST) * Re: atomselect Justin Gullingsrud (Tue Mar 18 2003 - 16:52:12 CST) * Missing vmdplugin.h in VMD source code Paul Darwen (Wed Mar 19 2003 - 22:35:22 CST) * Color code Rukman Hertadi (Thu Mar 20 2003 - 01:42:37 CST) * Re: Color code Justin Gullingsrud (Thu Mar 20 2003 - 10:29:29 CST) * Memory problems with TCL scripts in VMD. Joe Huang (Thu Mar 20 2003 - 13:02:48 CST) * getting heavy atom contacts B. Bennion (Thu Mar 20 2003 - 12:40:59 CST) * (no subject) chandran karunakaran (Thu Mar 20 2003 - 13:55:13 CST) * (no subject) chandran karunakaran (Thu Mar 20 2003 - 13:56:44 CST) * Re: your mail John Stone (Thu Mar 20 2003 - 14:01:56 CST) * PBC - setting box size Dallas Warren (Thu Mar 20 2003 - 20:43:35 CST) * Re: PBC - setting box size John Stone (Thu Mar 20 2003 - 21:58:52 CST) * Can't import python math module Scott Stagg (Fri Mar 21 2003 - 10:16:14 CST) * Re: Missing vmdplugin.h in VMD source code John Stone (Fri Mar 21 2003 - 16:31:34 CST) * Re: Memory problems with TCL scripts in VMD. John Stone (Fri Mar 21 2003 - 16:36:02 CST) * Re: mouse-move-rep in VMD 1.8 John Stone (Fri Mar 21 2003 - 16:44:59 CST) * Re: Memory problems with TCL scripts in VMD. Justin Gullingsrud (Fri Mar 21 2003 - 17:53:51 CST) * Distance, angle chandran karunakaran (Sat Mar 22 2003 - 15:09:10 CST) * Re: Distance, angle John Stone (Mon Mar 24 2003 - 10:27:52 CST) * Re: Can't import python math module John Stone (Mon Mar 24 2003 - 10:47:19 CST) * drawing bonds Lubos Vrbka (Tue Mar 25 2003 - 09:27:05 CST) * Re: drawing bonds John Stone (Tue Mar 25 2003 - 09:36:38 CST) * Re: drawing bonds Justin Gullingsrud (Tue Mar 25 2003 - 09:40:19 CST) * Solvate 1.1.1 chandran karunakaran (Tue Mar 25 2003 - 13:05:23 CST) * Compilation issues with tcl.h Paul Darwen (Tue Mar 25 2003 - 21:36:27 CST) * Re: Compilation issues with tcl.h John Stone (Tue Mar 25 2003 - 22:33:02 CST) * Problem with stride, surf and tachyon in Windows2000 J. Rui Rodrigues (Wed Mar 26 2003 - 11:47:03 CST) * Re: Problem with stride, surf and tachyon in Windows2000 John Stone (Wed Mar 26 2003 - 13:42:54 CST) * Unit cell information in python and IMD interface code Lars Bruno Hansen (Thu Mar 27 2003 - 09:26:57 CST) * animation question Randall Hall (Thu Mar 27 2003 - 12:37:35 CST) * Re: animation question John Stone (Thu Mar 27 2003 - 22:51:57 CST) * RE: animation question #WONG CHEE HOW# (Fri Mar 28 2003 - 00:10:24 CST) * Re: Unit cell information in python and IMD interface code Justin Gullingsrud (Fri Mar 28 2003 - 12:03:31 CST) * Re: Problem with stride, surf and tachyon in Windows2000 John Stone (Fri Mar 28 2003 - 15:37:49 CST) * (no subject) Markus Laub (Mon Mar 31 2003 - 06:31:44 CST) * Re: your mail John Stone (Mon Mar 31 2003 - 10:09:49 CST) * Re: Unit cell information in python and IMD interface code Justin Gullingsrud (Mon Mar 31 2003 - 12:12:22 CST) * support for truncated octahedron Ioana Cozmuta (Tue Apr 01 2003 - 17:39:04 CST) * python: error importing packages Lars Bruno Hansen (Wed Apr 02 2003 - 06:22:56 CST) * gamepad on linux? Dr. Daniel James White PhD (Wed Apr 02 2003 - 10:52:15 CST) * Re: gamepad on linux? John Stone (Wed Apr 02 2003 - 11:15:44 CST) * Re: python: error importing packages John Stone (Tue Apr 08 2003 - 10:56:41 CDT) * Drawing bonds to metals Stephen Koch (Tue Apr 08 2003 - 15:37:08 CDT) * Re: Drawing bonds to metals John Stone (Tue Apr 08 2003 - 17:10:39 CDT) * Metal-Metal distance chandran karunakaran (Tue Apr 08 2003 - 17:26:13 CDT) * Re: Metal-Metal distance John Stone (Tue Apr 08 2003 - 17:42:22 CDT) * Error compiling trio Patrick Ladam (Wed Apr 09 2003 - 10:18:56 CDT) * Re: Error compiling trio John Stone (Wed Apr 09 2003 - 10:08:53 CDT) * (no subject) silvya (Thu Apr 10 2003 - 17:55:11 CDT) * plotting wave functions Ioana Cozmuta (Thu Apr 10 2003 - 18:45:23 CDT) * water box Ioana Cozmuta (Thu Apr 10 2003 - 19:00:42 CDT) * Re: plotting wave functions John Stone (Thu Apr 10 2003 - 19:27:36 CDT) * Re: water box John Stone (Thu Apr 10 2003 - 19:30:22 CDT) * Re: water box Ioana Cozmuta (Thu Apr 10 2003 - 19:52:25 CDT) * Re: water box Ioana Cozmuta (Thu Apr 10 2003 - 20:05:39 CDT) * a few questions on uninstall, labels, rasmol,seq window Y U Sasidhar (Fri Apr 11 2003 - 00:07:51 CDT) * Re: a few questions on uninstall, labels, rasmol,seq window John Stone (Fri Apr 11 2003 - 14:49:49 CDT) * Re: water box John Stone (Fri Apr 11 2003 - 14:55:44 CDT) * Re: water box John Stone (Fri Apr 11 2003 - 14:56:41 CDT) * Wait command in Win2000 Michael Redmond (Fri Apr 11 2003 - 15:43:13 CDT) * Re: Wait command in Win2000 John Stone (Fri Apr 11 2003 - 15:52:33 CDT) * Re: Wait command in Win2000 Michael Redmond (Fri Apr 11 2003 - 16:28:43 CDT) * Re: Wait command in Win2000 John Stone (Fri Apr 11 2003 - 16:47:41 CDT) * Re: Wait command in Win2000 John Stone (Fri Apr 11 2003 - 17:24:22 CDT) * Some comments about stereo with nvidia cards & shutter glasses Marc Baaden (Tue Apr 15 2003 - 03:03:31 CDT) * trace P atoms in RNA Yongmei Wang (Wed Apr 16 2003 - 17:08:15 CDT) * centering seection on screen Lubos Vrbka (Thu Apr 17 2003 - 05:28:46 CDT) * Re: centering seection on screen B. Bennion (Thu Apr 17 2003 - 09:50:32 CDT) * Re: centering seection on screen Lubos Vrbka (Thu Apr 17 2003 - 10:38:25 CDT) * Fwd: FW: centering selection on screen John Stone (Thu Apr 17 2003 - 12:38:35 CDT) * Re: Memory problems with XP John Stone (Mon Apr 21 2003 - 11:31:59 CDT) * question about periodicity Ioana Cozmuta (Mon Apr 21 2003 - 13:38:49 CDT) * Re: question about periodicity John Stone (Tue Apr 22 2003 - 13:57:56 CDT) * VMD 1.8.1 beta 2 available for testing.... John Stone (Tue Apr 22 2003 - 15:25:05 CDT) * Re: Some comments about stereo with nvidia cards & shutter glasses Michael Redmond (Tue Apr 22 2003 - 17:15:22 CDT) * Updating colors Paul Tangney (Tue Apr 22 2003 - 20:44:35 CDT) * Movie Script Rukman Hertadi (Wed Apr 23 2003 - 04:27:43 CDT) * Re: Movie Script John Stone (Wed Apr 23 2003 - 09:48:40 CDT) * installation problems with Redhat 9 james tomomi macdonald (Wed Apr 23 2003 - 13:15:22 CDT) * Re: installation problems with Redhat 9 John Stone (Wed Apr 23 2003 - 13:27:57 CDT) * Re: installation problems with Redhat 9 james tomomi macdonald (Wed Apr 23 2003 - 13:53:11 CDT) * Re: Updating colors John Stone (Wed Apr 23 2003 - 15:01:05 CDT) * Re: Updating colors John Stone (Wed Apr 23 2003 - 15:24:57 CDT) * Re: Updating colors John Stone (Wed Apr 23 2003 - 15:30:28 CDT) * unit cell information Ioana Cozmuta (Fri Apr 25 2003 - 15:34:41 CDT) * Re: unit cell information Ioana Cozmuta (Fri Apr 25 2003 - 15:46:35 CDT) * DCD file format? Changbong Hyeon (Fri Apr 25 2003 - 15:50:23 CDT) * Text-line command for Graphics? Changbong Hyeon (Fri Apr 25 2003 - 16:00:40 CDT) * Re: DCD file format? John Stone (Fri Apr 25 2003 - 16:02:00 CDT) * Re: Text-line command for Graphics? John Stone (Fri Apr 25 2003 - 16:05:46 CDT) * Re: unit cell information John Stone (Fri Apr 25 2003 - 17:28:48 CDT) * Re: DCD file format? John Stone (Fri Apr 25 2003 - 17:40:04 CDT) * Re: unit cell information Justin Gullingsrud (Mon Apr 28 2003 - 12:07:46 CDT) * VMD on redhat9 Michele Seeber (Tue Apr 29 2003 - 03:31:40 CDT) * problem with labels Lubos Vrbka (Tue Apr 29 2003 - 08:36:05 CDT) * Re: problem with labels John Stone (Tue Apr 29 2003 - 13:07:30 CDT) * Re: problem with labels John Stone (Tue Apr 29 2003 - 13:36:00 CDT) * Re: VMD on redhat9 John Stone (Tue Apr 29 2003 - 13:41:30 CDT) * Re: problem with labels Lubos Vrbka (Tue Apr 29 2003 - 16:09:38 CDT) * Re: problem with labels John Stone (Tue Apr 29 2003 - 17:53:40 CDT) * configuration file Ioana Cozmuta (Tue Apr 29 2003 - 19:41:47 CDT) * Re: Some comments about stereo with nvidia cards & shutter glasses Marc Baaden (Wed Apr 30 2003 - 02:43:58 CDT) * Re: VMD on redhat9 Michele Seeber (Wed Apr 30 2003 - 03:19:25 CDT) * Memory problems using the "move" command inside a loop! Thomas Hedegaard Pedersen (Wed Apr 30 2003 - 09:28:01 CDT) * Re: Memory problems using the "move" command inside a loop! John Stone (Wed Apr 30 2003 - 10:05:19 CDT) * RE: Some comments about stereo with nvidia cards & shutter glasses Warren L. DeLano (Wed Apr 30 2003 - 15:08:19 CDT) * Re: Memory problems using the "move" command inside a loop! Justin Gullingsrud (Wed Apr 30 2003 - 17:56:32 CDT) * Re: Some comments about stereo with nvidia cards & shutter glasses John Stone (Wed Apr 30 2003 - 20:45:29 CDT) * Re: VMD on redhat9 John Stone (Wed Apr 30 2003 - 20:48:02 CDT) * cursor size/shape in pick mode Mads Nørregaard-Madsen (Thu May 01 2003 - 03:43:32 CDT) * Re: cursor size/shape in pick mode John Stone (Thu May 01 2003 - 08:30:57 CDT) * Save_state and Load_state Jill Vickery (Thu May 01 2003 - 12:05:00 CDT) * VMD on Solaris 2.x doesn't compile Prabhakar Reddy Gudla (Fri May 02 2003 - 00:45:53 CDT) * Re: VMD on Solaris 2.x doesn't compile John Stone (Fri May 02 2003 - 09:52:53 CDT) * Re: Save_state and Load_state John Stone (Fri May 02 2003 - 10:04:44 CDT) * RE: cursor size/shape in pick mode Mads Nørregaard-Madsen (Fri May 02 2003 - 12:04:45 CDT) * Re: VMD on Solaris 2.x doesn't compile John Stone (Fri May 02 2003 - 13:08:22 CDT) * Re: Memory problems using the "move" command inside a loop! Joe Huang (Fri May 02 2003 - 16:23:54 CDT) * Re: Memory problems using the "move" command inside a loop! John Stone (Fri May 02 2003 - 15:30:39 CDT) * Re: Some comments about stereo with nvidia cards & shutter glasses Bogdan Costescu (Mon May 05 2003 - 11:58:14 CDT) * new color scale Rukman Hertadi (Tue May 06 2003 - 00:44:46 CDT) * Re: new color scale John Stone (Tue May 06 2003 - 13:06:01 CDT) * Re: Wavefront output of VMD John Stone (Wed May 07 2003 - 11:09:12 CDT) * about superimposing by VMD Hu, Xiaohua (Wed May 07 2003 - 13:36:47 CDT) * vmdmovie on OS X current Charles McCallum (Fri May 09 2003 - 02:22:23 CDT) * Re: vmdmovie on OS X current John Stone (Fri May 09 2003 - 09:48:56 CDT) * Re: about superimposing by VMD John Stone (Fri May 09 2003 - 10:46:46 CDT) * Is it possible to read a discover trajectory into VMD? Knut Teigen (Sat May 10 2003 - 09:11:23 CDT) * Plugins Problem with 1.8.1b2 Patrick Ladam (Mon May 12 2003 - 04:08:14 CDT) * changing atom number in animation yifat b (Mon May 12 2003 - 04:50:17 CDT) * Re: Plugins Problem with 1.8.1b2 John Stone (Mon May 12 2003 - 11:03:23 CDT) * Re: changing atom number in animation John Stone (Mon May 12 2003 - 11:07:32 CDT) * VMD 1.8.1 beta 4 posted... John Stone (Mon May 12 2003 - 15:25:22 CDT) * Re: Is it possible to read a discover trajectory into VMD? John Stone (Mon May 12 2003 - 15:37:44 CDT) * Re: VMD 1.8.1 beta 4 posted... John Stone (Mon May 12 2003 - 18:59:46 CDT) * Where is the Tracker Menu Stephen P. Molnar, Ph.D. (Tue May 13 2003 - 18:46:22 CDT) * Re: Where is the Tracker Menu John Stone (Tue May 13 2003 - 21:15:17 CDT) * Re: changing atom number in animation yifat b (Thu May 15 2003 - 05:01:06 CDT) * VMD 1.8 on Windows2000 to crash when executing simple scripts Jos Aerts (Thu May 15 2003 - 07:10:50 CDT) * Re: VMD on redhat9 Michele Seeber (Thu May 15 2003 - 12:57:59 CDT) * Re: VMD on redhat9 John Stone (Thu May 15 2003 - 16:00:04 CDT) * Re: solute + solvent temperature? John Stone (Thu May 15 2003 - 16:19:58 CDT) * Re: changing atom number in animation John Stone (Thu May 15 2003 - 16:21:24 CDT) * VMD 1.8.1 beta 5 posted for testing... John Stone (Thu May 15 2003 - 17:35:00 CDT) * Re: VMD 1.8 on Windows2000 to crash when executing simple scripts John Stone (Thu May 15 2003 - 17:52:44 CDT) * Re: solute + solvent temperature? Ioana Cozmuta (Thu May 15 2003 - 18:00:23 CDT) * Re: solute + solvent temperature? Charles McCallum (Fri May 16 2003 - 01:04:12 CDT) * Re: solute + solvent temperature? John Stone (Fri May 16 2003 - 10:00:27 CDT) * Re: VMD mods for the CAVE John Stone (Fri May 16 2003 - 10:11:15 CDT) * Graphics Cards Dallas Warren (Sun May 18 2003 - 17:55:37 CDT) * Sequence Menu For Nucleic Acids Patrick Ladam (Mon May 19 2003 - 08:55:45 CDT) * Re: Graphics Cards John Stone (Mon May 19 2003 - 12:27:54 CDT) * Re: Graphics Cards Dallas Warren (Mon May 19 2003 - 17:06:30 CDT) * VMD 1.8.1 beta 6 posted... John Stone (Mon May 19 2003 - 18:13:55 CDT) * Re: VMD 1.8.1 beta 6 posted... John Stone (Mon May 19 2003 - 18:15:09 CDT) * Temperature/Beta factor coloring MengJuei Hsieh (Tue May 20 2003 - 02:00:26 CDT) * Molecular dynamics order parameters David Chalmers (Tue May 20 2003 - 06:47:18 CDT) * Re: Graphics Cards John Stone (Tue May 20 2003 - 10:55:24 CDT) * Re: Molecular dynamics order parameters Justin Gullingsrud (Tue May 20 2003 - 13:03:29 CDT) * Re: Molecular dynamics order parameters Joe Huang (Tue May 20 2003 - 17:41:59 CDT) * Re: Molecular dynamics order parameters Dallas Warren (Tue May 20 2003 - 16:58:09 CDT) * VMD 1.8.1 beta 7 posted.. John Stone (Tue May 20 2003 - 18:21:42 CDT) * (no subject) Dongsheng Zhang (Wed May 21 2003 - 23:13:52 CDT) * Wrapping atoms around unit cell boundaries John Stone (Thu May 22 2003 - 10:14:18 CDT) * compiling/porting vmd brad noyes (Thu May 22 2003 - 22:23:25 CDT) * Re: compiling/porting vmd John Stone (Thu May 22 2003 - 23:03:06 CDT) * Re: your mail John Stone (Thu May 22 2003 - 23:18:11 CDT) * VMD 1.8.1 beta 8 posted... John Stone (Fri May 23 2003 - 00:28:04 CDT) * Re: compiling/porting vmd brad noyes (Fri May 23 2003 - 01:30:18 CDT) * implicit casting brad noyes (Fri May 23 2003 - 15:14:27 CDT) * Re: implicit casting John Stone (Fri May 23 2003 - 15:20:51 CDT) * Re: implicit casting brad noyes (Fri May 23 2003 - 15:25:40 CDT) * center command Ioana Cozmuta (Fri May 23 2003 - 17:02:51 CDT) * about shape order parameter Emmanuel Vamvakopoulos (Sat May 24 2003 - 07:12:07 CDT) * stereo Oscar Moran (Wed May 28 2003 - 12:24:47 CDT) * Re: 3-d visualization John Stone (Wed May 28 2003 - 12:29:25 CDT) * Re: stereo Alan Wilter Sousa da Silva (Wed May 28 2003 - 13:02:00 CDT) * IMD interface code and endianness Marc Baaden (Wed May 28 2003 - 13:36:18 CDT) * Re: IMD interface code and endianness John Stone (Wed May 28 2003 - 13:55:17 CDT) * Re: IMD interface code and endianness Marc Baaden (Wed May 28 2003 - 14:21:19 CDT) * Re: IMD interface code and endianness John Stone (Wed May 28 2003 - 14:36:42 CDT) * Re: advice for a PCI video card on redhat John Stone (Wed May 28 2003 - 15:49:07 CDT) * load multiple pdb files simultaneously J. Zheng (Wed May 28 2003 - 18:29:13 CDT) * Re: load multiple pdb files simultaneously John Stone (Wed May 28 2003 - 19:28:34 CDT) * problem in loading dcd file? Ioana Cozmuta (Thu May 29 2003 - 19:53:40 CDT) * Rotating dihedrals Patrick Ladam (Fri May 30 2003 - 05:09:43 CDT) * Re: IMD interface code and endianness Marc Baaden (Fri May 30 2003 - 08:39:14 CDT) * Missing bonds noel.oboyle2@mail.dcu.ie (Fri May 30 2003 - 09:14:49 CDT) * trajectory_path Tatyana Kuznetsova (Fri May 30 2003 - 09:25:51 CDT) * Re: Missing bonds John Stone (Fri May 30 2003 - 10:03:34 CDT) * Re: trajectory_path John Stone (Fri May 30 2003 - 10:19:55 CDT) * Re: problem in loading dcd file? John Stone (Fri May 30 2003 - 10:29:32 CDT) * Re: Rotating dihedrals John Stone (Fri May 30 2003 - 15:16:18 CDT) * cartoon representation Tyler Luchko (Fri May 30 2003 - 15:21:40 CDT) * Re: cartoon representation John Stone (Fri May 30 2003 - 15:46:30 CDT) * Re: problem in loading dcd file? Ioana Cozmuta (Fri May 30 2003 - 15:56:08 CDT) * Re: problem in loading dcd file? John Stone (Fri May 30 2003 - 16:02:50 CDT) * Re: Rotating dihedrals John Stone (Fri May 30 2003 - 16:04:54 CDT) * Re: problem in loading dcd file? Ioana Cozmuta (Fri May 30 2003 - 19:15:14 CDT) * Re: tubes John Stone (Tue Jun 03 2003 - 13:41:23 CDT) * Situs Suzanne Brewerton (Wed Jun 04 2003 - 09:22:23 CDT) * Dihedral angle calculation! Thomas Hedegaard Pedersen (Wed Jun 04 2003 - 10:58:36 CDT) * Re: Dihedral angle calculation! John Stone (Wed Jun 04 2003 - 11:32:15 CDT) * Re: Dihedral angle calculation! Jan Saam (Wed Jun 04 2003 - 11:37:41 CDT) * Re: Dihedral angle calculation! Justin Gullingsrud (Wed Jun 04 2003 - 12:08:32 CDT) * Re: Dihedral angle calculation! Justin Gullingsrud (Wed Jun 04 2003 - 12:29:43 CDT) * RE: Situs Zampighi, Lorenzo (Wed Jun 04 2003 - 13:46:54 CDT) * Re: Situs John Stone (Wed Jun 04 2003 - 13:52:49 CDT) * Re: Situs John Stone (Wed Jun 04 2003 - 14:03:56 CDT) * Re: Format of the axes John Stone (Wed Jun 04 2003 - 14:22:20 CDT) * distance to solvent accessible surface Greg Moore (Wed Jun 04 2003 - 15:29:42 CDT) * Re: distance to solvent accessible surface John Stone (Wed Jun 04 2003 - 16:23:06 CDT) * Re: Dihedral angle calculation! Jan Saam (Wed Jun 04 2003 - 16:54:02 CDT) * Re: Situs John Stone (Wed Jun 04 2003 - 17:36:45 CDT) * RE: Situs Suzanne Brewerton (Thu Jun 05 2003 - 03:44:51 CDT) * VMD and Situs Suzanne Brewerton (Thu Jun 05 2003 - 04:53:33 CDT) * Re: VMD and Situs John Stone (Thu Jun 05 2003 - 09:10:21 CDT) * GeForce FX5800 and VMD 1.8.1 Joost Van Durme (Thu Jun 05 2003 - 12:19:59 CDT) * psfgen error with alias residue Dr. Daniel James White PhD (Mon Jun 09 2003 - 08:48:32 CDT) * Re: psfgen error with alias residue Jim Phillips (Mon Jun 09 2003 - 09:33:06 CDT) * VMD Error! Ramesh K. Sistla (Tue Jun 10 2003 - 02:02:02 CDT) * Re: VMD Error! Teletchéa Stéphane (Tue Jun 10 2003 - 01:40:55 CDT) * Re: VMD Error! Ramesh K. Sistla (Tue Jun 10 2003 - 02:33:56 CDT) * Re: VMD Error! Teletchéa Stéphane (Tue Jun 10 2003 - 02:06:50 CDT) * helix axis for A-RNA Vlad Cojocaru (Tue Jun 10 2003 - 07:25:09 CDT) * Re: helix axis for A-RNA Teletchéa Stéphane (Tue Jun 10 2003 - 08:11:35 CDT) * Re: VMD Error! (fwd) R.Sathyapriya (Wed Jun 11 2003 - 10:10:31 CDT) * Re: VMD Error! (fwd) John Stone (Wed Jun 11 2003 - 09:44:48 CDT) * Support Contours? Dallas Warren (Wed Jun 11 2003 - 17:16:09 CDT) * Re: VMD Error! (fwd) R.Sathyapriya (Thu Jun 12 2003 - 00:33:35 CDT) * double image for one eye with crystal eyes stereo Dr. Daniel James White PhD (Thu Jun 12 2003 - 08:38:37 CDT) * NAMD IMD large protein model Dr. Daniel James White PhD (Thu Jun 12 2003 - 08:51:23 CDT) * Re: double image for one eye with crystal eyes stereo Bogdan Costescu (Thu Jun 12 2003 - 09:34:36 CDT) * Re: double image for one eye with crystal eyes stereo Dr. Daniel James White PhD (Thu Jun 12 2003 - 09:48:30 CDT) * Re: double image for one eye with crystal eyes stereo John Stone (Thu Jun 12 2003 - 10:11:43 CDT) * Re: NAMD IMD large protein model Marc Baaden (Thu Jun 12 2003 - 10:23:38 CDT) * Re: double image for one eye with crystal eyes stereo Bogdan Costescu (Thu Jun 12 2003 - 10:41:47 CDT) * Re: double image for one eye with crystal eyes stereo Bogdan Costescu (Thu Jun 12 2003 - 11:02:01 CDT) * Re: double image for one eye with crystal eyes stereo John Stone (Thu Jun 12 2003 - 11:07:01 CDT) * Re: double image for one eye with crystal eyes stereo John Stone (Thu Jun 12 2003 - 11:24:51 CDT) * Re: NAMD IMD large protein model Jim Phillips (Thu Jun 12 2003 - 11:32:45 CDT) * stereo glasses and VMD Sanjeev B.S. (Thu Jun 12 2003 - 12:47:56 CDT) * Re: stereo glasses and VMD John Stone (Thu Jun 12 2003 - 15:26:17 CDT) * Re: double image for one eye with crystal eyes stereo Dr. Daniel James White PhD (Fri Jun 13 2003 - 03:38:01 CDT) * Re: double image for one eye with crystal eyes stereo Dr. Daniel James White PhD (Fri Jun 13 2003 - 03:50:12 CDT) * Re: NAMD IMD large protein model Marc Baaden (Fri Jun 13 2003 - 05:35:45 CDT) * Re: Support Contours? John Stone (Fri Jun 13 2003 - 09:53:49 CDT) * Re: double image for one eye with crystal eyes stereo John Stone (Fri Jun 13 2003 - 10:04:58 CDT) * Re: double image for one eye with crystal eyes stereo John Stone (Fri Jun 13 2003 - 10:13:58 CDT) * Re: NAMD IMD large protein model John Stone (Fri Jun 13 2003 - 15:53:15 CDT) * MSMS and VMD: vertices discripancy Sanjeev B.S. (Sat Jun 14 2003 - 14:32:38 CDT) * Announce: VMD 1.8.1 released!! John Stone (Sun Jun 15 2003 - 15:38:19 CDT) * Re: Announce: VMD 1.8.1 released!! MengJuei Hsieh (Sun Jun 15 2003 - 22:47:23 CDT) * Re: Announce: VMD 1.8.1 released!! John Stone (Sun Jun 15 2003 - 23:37:12 CDT) * osX anti aliasing and rendering speed / window size on linux Dr. Daniel James White PhD (Mon Jun 16 2003 - 04:45:54 CDT) * Re: osX anti aliasing and rendering speed / window size on linux John Stone (Mon Jun 16 2003 - 10:11:33 CDT) * Re: osX anti aliasing and rendering speed / window size on linux John Stone (Mon Jun 16 2003 - 11:26:06 CDT) * Re: MSMS and VMD: vertices discripancy John Stone (Mon Jun 16 2003 - 18:48:56 CDT) * opengl window resize hangs on linux/nvidia Mikko Huhtala (Tue Jun 17 2003 - 03:01:44 CDT) * Re: MSMS and VMD: vertices discripancy Sanjeev B.S. (Tue Jun 17 2003 - 12:24:00 CDT) * Re: MSMS and VMD: vertices discripancy John Stone (Tue Jun 17 2003 - 12:22:39 CDT) * Re: MSMS and VMD: vertices discripancy Sanjeev B.S. (Tue Jun 17 2003 - 13:18:44 CDT) * Re: MSMS and VMD: vertices discripancy John Stone (Tue Jun 17 2003 - 12:51:20 CDT) * Re: opengl window resize hangs on linux/nvidia John Stone (Tue Jun 17 2003 - 15:32:29 CDT) * Re: Support Contours? Dallas Warren (Tue Jun 17 2003 - 21:28:26 CDT) * Colouring #WONG CHEE HOW# (Wed Jun 18 2003 - 01:02:39 CDT) * PLT file format? Dallas Warren (Wed Jun 18 2003 - 01:55:31 CDT) * amber trajectory Oscar Moran (Wed Jun 18 2003 - 03:17:58 CDT) * Re: Colouring Justin Gullingsrud (Wed Jun 18 2003 - 09:22:42 CDT) * Re: amber trajectory John Stone (Wed Jun 18 2003 - 09:55:39 CDT) * Re: VMD & NAMD John Stone (Wed Jun 18 2003 - 10:09:35 CDT) * MacOSX VMD errors. Kelvin Chu (Wed Jun 18 2003 - 10:37:55 CDT) * quicktime/mpeg movies Peter Tieleman (Wed Jun 18 2003 - 10:51:56 CDT) * Re: MacOSX VMD errors. John Stone (Wed Jun 18 2003 - 10:55:19 CDT) * Re: quicktime/mpeg movies John Stone (Wed Jun 18 2003 - 11:21:53 CDT) * New User of VMD Shantipriya Tenneti (Wed Jun 18 2003 - 12:37:09 CDT) * Re: MacOSX VMD errors. (solved) John Stone (Wed Jun 18 2003 - 12:57:00 CDT) * Re: New User of VMD John Stone (Wed Jun 18 2003 - 13:43:53 CDT) * Re: PLT file format? John Stone (Thu Jun 19 2003 - 11:03:28 CDT) * coloring waters caldwell@heimdal.compchem.ucsf.edu (Thu Jun 19 2003 - 12:51:05 CDT) * Re: coloring waters Sanjeev B.S. (Thu Jun 19 2003 - 14:55:14 CDT) * Re: PLT file format? Dallas Warren (Thu Jun 19 2003 - 16:39:43 CDT) * Re: coloring waters caldwell@heimdal.compchem.ucsf.edu (Thu Jun 19 2003 - 18:25:04 CDT) * Re: coloring waters John Stone (Thu Jun 19 2003 - 19:50:02 CDT) * coloring method: user Jan Saam (Fri Jun 20 2003 - 06:56:26 CDT) * Visualizing CURVES output Vlad Cojocaru (Fri Jun 20 2003 - 05:08:12 CDT) * Re: Visualizing CURVES output Teletchéa Stéphane (Fri Jun 20 2003 - 06:36:12 CDT) * Bond Lengths Timothy W Suen (Fri Jun 20 2003 - 08:54:25 CDT) * Re: Bond Lengths John Stone (Fri Jun 20 2003 - 09:55:54 CDT) * Re: coloring method: user John Stone (Fri Jun 20 2003 - 10:03:15 CDT) * Re: coloring waters caldwell@heimdal.compchem.ucsf.edu (Fri Jun 20 2003 - 12:06:32 CDT) * Re: quicktime/mpeg movies Bogdan Costescu (Fri Jun 20 2003 - 14:30:24 CDT) * Re: quicktime/mpeg movies John Stone (Fri Jun 20 2003 - 14:59:37 CDT) * Re: Visualizing CURVES output John Stone (Fri Jun 20 2003 - 15:11:25 CDT) * .XYZ File format Shantipriya Tenneti (Fri Jun 20 2003 - 18:04:42 CDT) * Re: .XYZ File format Ramesh K. Sistla (Mon Jun 23 2003 - 06:10:30 CDT) * Re: .XYZ File format (DL_POLY conversion) John Stone (Mon Jun 23 2003 - 09:37:34 CDT) * Simple potential energy calculations in VMD Dominique Vlieghe (Mon Jun 23 2003 - 10:34:45 CDT) * question on resname Ioana Cozmuta (Mon Jun 23 2003 - 16:16:02 CDT) * Re: Simple potential energy calculations in VMD Jan Saam (Mon Jun 23 2003 - 19:19:47 CDT) * (no subject) Gemma Kinsella (Tue Jun 24 2003 - 10:07:26 CDT) * (no subject) Gemma Kinsella (Tue Jun 24 2003 - 10:11:04 CDT) * Re: your mail John Stone (Tue Jun 24 2003 - 10:18:33 CDT) * Re: question on resname John Stone (Tue Jun 24 2003 - 10:31:10 CDT) * Re: PLT file format? John Stone (Tue Jun 24 2003 - 10:46:43 CDT) * segid and geometry script Dominique Vlieghe (Wed Jun 25 2003 - 08:51:52 CDT) * Re: segid and geometry script Jan Saam (Wed Jun 25 2003 - 18:33:35 CDT) * Re: segid and geometry script Jan Saam (Wed Jun 25 2003 - 18:42:52 CDT) * Re: PLT file format? John Stone (Thu Jul 03 2003 - 13:58:53 CDT) * Re: MSMS and VMD: vertices discripancy John Stone (Thu Jul 03 2003 - 14:37:27 CDT) * Note about VMD 1.8.1 on on MacOS X 10.1.x.... John Stone (Mon Jul 07 2003 - 17:20:21 CDT) * Re: print results to file John Stone (Mon Jul 07 2003 - 18:16:26 CDT) * VMD Georgios Scheiner-Bobis (Tue Jul 08 2003 - 03:39:38 CDT) * Re: VMD John Stone (Tue Jul 08 2003 - 10:44:23 CDT) * fitting Vlad Cojocaru (Thu Jul 10 2003 - 07:13:07 CDT) * Re: fitting Justin Gullingsrud (Thu Jul 10 2003 - 09:20:41 CDT) * animate delete Hannes Loeffler (Fri Jul 11 2003 - 01:37:45 CDT) * Problem with Vmd on SGI + Cavelib Romaric David (Fri Jul 11 2003 - 06:37:10 CDT) * Re: animate delete John Stone (Fri Jul 11 2003 - 10:20:11 CDT) * Re: Problem with Vmd on SGI + Cavelib John Stone (Fri Jul 11 2003 - 12:59:49 CDT) * Re: Problem with Vmd on SGI + Cavelib Romaric David (Sat Jul 12 2003 - 06:20:52 CDT) * Reg:Babel Shantipriya Tenneti (Sun Jul 13 2003 - 14:57:10 CDT) * Reg: BABEL Shantipriya Tenneti (Sun Jul 13 2003 - 15:30:20 CDT) * render to png, and ppm Brad Noyes (Sun Jul 13 2003 - 20:47:15 CDT) * VMD and doubleprecision trajectories Luca Mollica (Tue Jul 15 2003 - 07:30:44 CDT) * Re: VMD and doubleprecision trajectories John Stone (Tue Jul 15 2003 - 09:48:44 CDT) * question Ioana Cozmuta (Tue Jul 15 2003 - 16:22:42 CDT) * Re: question John Stone (Tue Jul 15 2003 - 16:33:13 CDT) * Re: question Ioana Cozmuta (Tue Jul 15 2003 - 16:58:45 CDT) * Re: question John Stone (Tue Jul 15 2003 - 17:08:58 CDT) * Re: PLT file format? Dallas Warren (Tue Jul 15 2003 - 17:58:30 CDT) * Re: PLT file format? John Stone (Tue Jul 15 2003 - 23:16:39 CDT) * Re: Problem with Vmd on SGI + Cavelib John Stone (Tue Jul 15 2003 - 23:33:55 CDT) * Re: Problem with Vmd on SGI + Cavelib Romaric David (Wed Jul 16 2003 - 08:22:29 CDT) * Re: Problem with Vmd on SGI + Cavelib John Stone (Wed Jul 16 2003 - 16:34:45 CDT) * Labels (atom type, partial charge) Bartek Dobrzelecki (Thu Jul 17 2003 - 06:00:22 CDT) * superposition Oscar Moran (Thu Jul 17 2003 - 06:53:53 CDT) * Re: superposition John Stone (Thu Jul 17 2003 - 09:48:20 CDT) * STL files alarcon@lncc.br (Thu Jul 17 2003 - 11:07:02 CDT) * Re: STL files John Stone (Thu Jul 17 2003 - 11:21:22 CDT) * Re: superposition John Stone (Thu Jul 17 2003 - 19:55:49 CDT) * Re: Labels (atom type, partial charge) John Stone (Thu Jul 17 2003 - 20:14:25 CDT) * vmd-l: New VMD-L subject lines... John Stone (Tue Jul 22 2003 - 16:53:05 CDT) * vmd-l: Re: question on resname Ioana Cozmuta (Tue Jul 22 2003 - 21:03:56 CDT) * Re: vmd-l: Re: question on resname Justin Gullingsrud (Tue Jul 22 2003 - 21:13:50 CDT) * Re: vmd-l: Re: question on resname Ioana Cozmuta (Tue Jul 22 2003 - 21:17:10 CDT) * vmd-l: compile VMD on freebsd 4.8 Tsu-Fan Cheng (Wed Jul 23 2003 - 14:23:12 CDT) * vmd-l: New VMD CVS tree location, update your aliases... John Stone (Wed Jul 23 2003 - 14:23:55 CDT) * Re: vmd-l: compile VMD on freebsd 4.8 John Stone (Wed Jul 23 2003 - 14:27:04 CDT) * Re: vmd-l: compile VMD on freebsd 4.8 Tsu-Fan Cheng (Wed Jul 23 2003 - 14:43:26 CDT) * Re: vmd-l: compile VMD on freebsd 4.8 brad noyes (Wed Jul 23 2003 - 20:59:27 CDT) * Re: vmd-l: compile VMD on freebsd 4.8 tscheng@ic.sunysb.edu (Thu Jul 24 2003 - 08:00:42 CDT) * vmd-l: VMD at Siggraph next week... John Stone (Thu Jul 24 2003 - 14:18:17 CDT) * Re: vmd-l: compile VMD on freebsd 4.8 brad noyes (Thu Jul 24 2003 - 17:54:42 CDT) * vmd-l: volume slice problem Giovanni Settanni (Fri Jul 25 2003 - 06:04:38 CDT) * Re: vmd-l: compile VMD on freebsd 4.8 tscheng@ic.sunysb.edu (Fri Jul 25 2003 - 07:56:03 CDT) * Re: vmd-l: volume slice problem John Stone (Fri Jul 25 2003 - 10:12:03 CDT) * vmd-l: selection Ioana Cozmuta (Fri Jul 25 2003 - 17:38:46 CDT) * Re: vmd-l: selection Andrew Dalke (Fri Jul 25 2003 - 18:22:25 CDT) * vmd-l: Some improvements for 1.8.2 Teletchéa Stéphane (Fri Jul 25 2003 - 19:55:17 CDT) * Re: vmd-l: Some improvements for 1.8.2 Andrew Dalke (Fri Jul 25 2003 - 20:18:57 CDT) * Re: vmd-l: Some improvements for 1.8.2 John Stone (Fri Jul 25 2003 - 20:37:46 CDT) * Re: vmd-l: Some improvements for 1.8.2 Hannes Loeffler (Fri Jul 25 2003 - 20:58:52 CDT) * Re: vmd-l: Some improvements for 1.8.2 Teletchéa Stéphane (Fri Jul 25 2003 - 21:06:37 CDT) * Re: vmd-l: Some improvements for 1.8.2 Justin Gullingsrud (Sat Jul 26 2003 - 16:08:56 CDT) * vmd-l: Reg: No. of Frames Shantipriya Tenneti (Sun Jul 27 2003 - 02:11:09 CDT) * vmd-l: Re: maillist Vlad Cojocaru (Sun Jul 27 2003 - 14:34:03 CDT) * Re: vmd-l: Re: maillist Justin Gullingsrud (Sun Jul 27 2003 - 23:58:21 CDT) * Re: vmd-l: Reg: No. of Frames Axel Kohlmeyer (Mon Jul 28 2003 - 02:13:51 CDT) * Re: vmd-l: Reg: No. of Frames Shantipriya Tenneti (Mon Jul 28 2003 - 13:04:31 CDT) * Re: vmd-l: Reg: No. of Frames Axel Kohlmeyer (Mon Jul 28 2003 - 13:33:51 CDT) * Re: vmd-l: Reg: No. of Frames Justin Gullingsrud (Mon Jul 28 2003 - 13:40:12 CDT) * vmd-l: namd restraints question Vlad Cojocaru (Mon Jul 28 2003 - 14:54:28 CDT) * vmd-l: Amber prmtop/inpcrd files Anshul Shah (Mon Jul 28 2003 - 15:45:05 CDT) * Re: vmd-l: Amber prmtop/inpcrd files Anshul Shah (Mon Jul 28 2003 - 17:17:29 CDT) * vmd-l: Periodic images J. Rui Rodrigues (Tue Jul 29 2003 - 11:43:23 CDT) * Re: vmd-l: Periodic images Justin Gullingsrud (Tue Jul 29 2003 - 11:38:15 CDT) * vmd-l: NAMD failure on Berendsen pressure scheme Vlad Cojocaru (Wed Jul 30 2003 - 07:53:39 CDT) * vmd-l: Re: CCL:NAMD failure on Berendsen pressure scheme Ioana Cozmuta (Wed Jul 30 2003 - 11:51:49 CDT) * Re: vmd-l: Amber prmtop/inpcrd files John Stone (Thu Jul 31 2003 - 11:44:38 CDT) * Re: vmd-l: Amber prmtop/inpcrd files Teletchéa Stéphane (Thu Jul 31 2003 - 12:49:27 CDT) * Re: vmd-l: Re: CCL:NAMD failure on Berendsen pressure scheme Ioana Cozmuta (Thu Jul 31 2003 - 13:03:24 CDT) * Re: vmd-l: Amber prmtop/inpcrd files caldwell@heimdal.compchem.ucsf.edu (Thu Jul 31 2003 - 14:22:12 CDT) * Re: vmd-l: Amber prmtop/inpcrd files Teletchéa Stéphane (Thu Jul 31 2003 - 15:44:32 CDT) * Re: vmd-l: Amber prmtop/inpcrd files John Stone (Thu Jul 31 2003 - 18:01:25 CDT) * vmd-l: Re: problems compiling vmd (1.8.1) John Stone (Mon Aug 04 2003 - 14:34:24 CDT) * vmd-l: Vmd -dispdev text under OS X Ken Sale (Mon Aug 04 2003 - 20:04:25 CDT) * Re: vmd-l: Vmd -dispdev text under OS X John Stone (Mon Aug 04 2003 - 20:13:47 CDT) * vmd-l: movie making Ioana Cozmuta (Tue Aug 05 2003 - 14:09:54 CDT) * Re: vmd-l: movie making Charles McCallum (Tue Aug 05 2003 - 16:05:53 CDT) * vmd-l: error when making a movie Ioana Cozmuta (Tue Aug 05 2003 - 18:04:15 CDT) * Re: vmd-l: error when making a movie John Stone (Tue Aug 05 2003 - 21:59:45 CDT) * Re: vmd-l: error when making a movie Ioana Cozmuta (Tue Aug 05 2003 - 22:32:21 CDT) * Re: vmd-l: error when making a movie John Stone (Tue Aug 05 2003 - 23:00:52 CDT) * Re: vmd-l: error when making a movie Ioana Cozmuta (Wed Aug 06 2003 - 00:53:22 CDT) * vmd-l: Bondlength information! Ramesh K. Sistla (Wed Aug 06 2003 - 02:54:34 CDT) * vmd-l: python: cannot find library barrett (Wed Aug 06 2003 - 04:53:06 CDT) * Re: vmd-l: error when making a movie John Stone (Wed Aug 06 2003 - 10:38:57 CDT) * vmd-l: Pressure and Gpressure output in NAMD Vlad Cojocaru (Wed Aug 06 2003 - 10:40:55 CDT) * Re: vmd-l: python: cannot find library John Stone (Wed Aug 06 2003 - 11:02:24 CDT) * Re: vmd-l: Bondlength information! John Stone (Wed Aug 06 2003 - 11:04:57 CDT) * Re: vmd-l: python: cannot find library Justin Gullingsrud (Wed Aug 06 2003 - 11:16:12 CDT) * Re: vmd-l: python: cannot find library Justin Gullingsrud (Wed Aug 06 2003 - 11:18:20 CDT) * Re: vmd-l: Pressure and Gpressure output in NAMD Jim Phillips (Wed Aug 06 2003 - 15:23:41 CDT) * vmd-l: trajectory animation usign PBC Ioana Cozmuta (Wed Aug 06 2003 - 17:33:45 CDT) * Re: vmd-l: trajectory animation usign PBC Justin Gullingsrud (Wed Aug 06 2003 - 18:04:39 CDT) * RE: vmd-l: python: cannot find library barrett (Thu Aug 07 2003 - 03:28:12 CDT) * Re: vmd-l: python: cannot find library Justin Gullingsrud (Thu Aug 07 2003 - 09:40:55 CDT) * vmd-l: Re: STL files Dieter Krachtus (Fri Aug 08 2003 - 09:04:45 CDT) * vmd-l: rgb to mpg Ioana Cozmuta (Fri Aug 08 2003 - 18:20:49 CDT) * Re: vmd-l: rgb to mpg John Stone (Fri Aug 08 2003 - 18:34:46 CDT) * Re: vmd-l: rgb to mpg Ioana Cozmuta (Fri Aug 08 2003 - 18:56:30 CDT) * vmd-l: configuring vmd w/ browser on OS X Charles McCallum (Fri Aug 08 2003 - 21:49:16 CDT) * vmd-l: protein/carbohydrate Aaron Oakley (Fri Aug 08 2003 - 22:48:54 CDT) * Re: vmd-l: rgb to mpg John Stone (Mon Aug 11 2003 - 10:50:42 CDT) * Re: vmd-l: configuring vmd w/ browser on OS X John Stone (Mon Aug 11 2003 - 11:22:14 CDT) * Re: vmd-l: rgb to mpg Ioana Cozmuta (Mon Aug 11 2003 - 13:31:44 CDT) * vmd-l: re-centering view/rotation axes Charles McCallum (Mon Aug 11 2003 - 17:03:37 CDT) * Re: vmd-l: rgb to mpg John Stone (Thu Aug 14 2003 - 22:01:08 CDT) * vmd-l: Re: VMD print out John Stone (Thu Aug 14 2003 - 22:15:42 CDT) * vmd-l: hi Alfredo Valles (Sat Aug 23 2003 - 06:15:08 CDT) * vmd-l: python question Alfredo Valles (Sat Aug 23 2003 - 09:41:37 CDT) * Re: vmd-l: python question Justin Gullingsrud (Sat Aug 23 2003 - 21:34:10 CDT) * vmd-l: python question 2 Alfredo Valles (Mon Aug 25 2003 - 04:02:10 CDT) * vmd-l: colors changed in animation yifat b (Mon Aug 25 2003 - 10:00:41 CDT) * Re: vmd-l: python question 2 Justin Gullingsrud (Mon Aug 25 2003 - 10:09:54 CDT) * vmd-l: Re: truncated octahedron box in namd (fwd) John Stone (Mon Aug 25 2003 - 10:24:18 CDT) * Re: vmd-l: colors changed in animation John Stone (Mon Aug 25 2003 - 10:32:47 CDT) * vmd-l: Using Solvate Script Raymond C. Fort Jr. (Mon Aug 25 2003 - 13:30:31 CDT) * Re: vmd-l: Using Solvate Script John Stone (Mon Aug 25 2003 - 13:27:45 CDT) * vmd-l: reading/writing Ioana Cozmuta (Mon Aug 25 2003 - 18:24:27 CDT) * Re: vmd-l: reading/writing John Stone (Mon Aug 25 2003 - 19:11:16 CDT) * Re: vmd-l: reading/writing Ioana Cozmuta (Mon Aug 25 2003 - 19:29:55 CDT) * vmd-l: psfgen Oded Kleifeld (Mon Aug 25 2003 - 19:50:26 CDT) * vmd-l: support for multi-frame XYZ files? jsu@its.caltech.edu (Mon Aug 25 2003 - 23:59:50 CDT) * Re: vmd-l: support for multi-frame XYZ files? John Stone (Tue Aug 26 2003 - 00:13:35 CDT) * Re: vmd-l: colors changed in animation yifat b (Tue Aug 26 2003 - 05:25:18 CDT) * vmd-l: truncated octahedron box in namd carles ferrer (Tue Aug 26 2003 - 17:58:28 CDT) * vmd-l: More Script Problems Raymond C. Fort Jr. (Tue Aug 26 2003 - 09:12:25 CDT) * Re: vmd-l: More Script Problems John Stone (Tue Aug 26 2003 - 09:31:24 CDT) * vmd-l: linux mesa binaries no longer available? Lubos Vrbka (Tue Aug 26 2003 - 12:20:31 CDT) * Re: vmd-l: More Script Problems John Stone (Tue Aug 26 2003 - 13:32:18 CDT) * Re: vmd-l: linux mesa binaries no longer available? John Stone (Tue Aug 26 2003 - 14:13:11 CDT) * vmd-l: Graphics workstation and Xenon problems with VMD? Fred Salsbury (Tue Aug 26 2003 - 19:49:41 CDT) * Re: vmd-l: Graphics workstation and Xenon problems with VMD? John Stone (Wed Aug 27 2003 - 00:26:11 CDT) * Re: vmd-l: Graphics workstation and Xenon problems with VMD? Fred Salsbury (Wed Aug 27 2003 - 06:22:05 CDT) * Re: vmd-l: Graphics workstation and Xenon problems with VMD? Axel Kohlmeyer (Wed Aug 27 2003 - 10:19:44 CDT) * vmd-l: VMD support -- Out of town until Sept. 9th John Stone (Wed Aug 27 2003 - 11:02:20 CDT) * Re: vmd-l: Graphics workstation and Xenon problems with VMD? Fred Salsbury (Wed Aug 27 2003 - 13:24:11 CDT) * Re: vmd-l: Graphics workstation and Xenon problems with VMD? John Stone (Wed Aug 27 2003 - 13:39:17 CDT) * vmd-l: need urgent help Ioana Cozmuta (Thu Aug 28 2003 - 13:04:30 CDT) * Re: vmd-l: reading/writing John Stone (Thu Aug 28 2003 - 15:38:18 CDT) * Re: vmd-l: Amber prmtop/inpcrd files John Stone (Thu Aug 28 2003 - 15:46:52 CDT) * Re: vmd-l: reading/writing John Stone (Thu Aug 28 2003 - 19:58:15 CDT) * Re: vmd-l: reading/writing Ioana Cozmuta (Thu Aug 28 2003 - 20:10:53 CDT) * Re: vmd-l: need urgent help Justin Gullingsrud (Fri Aug 29 2003 - 23:04:00 CDT) * Re: vmd-l: need urgent help Ioana Cozmuta (Fri Aug 29 2003 - 23:24:44 CDT) * vmd-l: drawing objects Karunesh Arora (Sat Aug 30 2003 - 08:37:22 CDT) * Re: vmd-l: need urgent help Justin Gullingsrud (Sat Aug 30 2003 - 19:30:56 CDT) * vmd-l: NAMD constant pressure/temp advice David Chalmers (Mon Sep 01 2003 - 03:06:35 CDT) * vmd-l: protein/carbohydrate Aaron Oakley (Tue Sep 02 2003 - 03:07:53 CDT) * vmd-l: Re: ATI radeon 8500 and Linux quad buffered stereo Dr. Daniel James White PhD (Tue Sep 02 2003 - 03:09:28 CDT) * vmd-l: python: packages not found also... Patrick Ladam (Tue Sep 02 2003 - 04:44:33 CDT) * vmd-l: NMR module in VMD ? Patrick Ladam (Tue Sep 02 2003 - 05:00:41 CDT) * vmd-l: simple question Ioana Cozmuta (Tue Sep 02 2003 - 19:05:41 CDT) * Re: vmd-l: simple question Justin Gullingsrud (Tue Sep 02 2003 - 19:35:05 CDT) * Re: vmd-l: simple question Andrew Dalke (Tue Sep 02 2003 - 19:40:49 CDT) * Re: vmd-l: simple question John Stone (Wed Sep 03 2003 - 22:39:14 CDT) * vmd-l: Re: hardware stereo with nVidia card John Stone (Wed Sep 03 2003 - 22:44:38 CDT) * Re: vmd-l: Re: hardware stereo with nVidia card Mads Nørregaard-Madsen (Thu Sep 04 2003 - 02:26:56 CDT) * vmd-l: python: packages not found also...(repost) Patrick Ladam (Thu Sep 04 2003 - 07:28:17 CDT) * vmd-l: question about selection Ioana Cozmuta (Thu Sep 04 2003 - 17:10:41 CDT) * Re: vmd-l: question about selection Andrew Dalke (Thu Sep 04 2003 - 18:57:00 CDT) * vmd-l: How to measure cross angles between helices Matthew C. Lee (Fri Sep 05 2003 - 13:57:42 CDT) * RE: vmd-l: python: packages not found also... barrett (Mon Sep 08 2003 - 05:44:12 CDT) * vmd-l: Reg: General question! Shantipriya Tenneti (Mon Sep 08 2003 - 11:26:39 CDT) * Re: vmd-l: python: packages not found also...(repost) John Stone (Tue Sep 09 2003 - 02:10:39 CDT) * Re: vmd-l: drawing objects John Stone (Tue Sep 09 2003 - 02:20:35 CDT) * vmd-l: python: packages not found also...(FIXED, thanks John) Patrick Ladam (Tue Sep 09 2003 - 05:14:14 CDT) * Re: vmd-l: compile VMD on freebsd 4.8 brad noyes (Tue Sep 09 2003 - 16:43:10 CDT) * Re: vmd-l: compile VMD on freebsd 4.8 John Stone (Tue Sep 09 2003 - 19:43:33 CDT) * Re: vmd-l: compile VMD on freebsd 4.8 brad noyes (Tue Sep 09 2003 - 21:05:44 CDT) * vmd-l: Backspace not functionning in console Patrick Ladam (Wed Sep 10 2003 - 07:07:05 CDT) * Re: vmd-l: Backspace not functionning in console John Stone (Wed Sep 10 2003 - 10:07:34 CDT) * vmd-l: numerical output for SURF? suzie.k.hight.1 (Wed Sep 10 2003 - 13:24:15 CDT) * vmd-l: Reading large traj file error or how to divide a large traj file into parts? Peng Tao (Wed Sep 10 2003 - 14:15:43 CDT) * vmd-l: Re: Reading large traj file error or how to divide a large traj file into parts? John Stone (Wed Sep 10 2003 - 14:56:18 CDT) * vmd-l: Re: Reading large traj file error or how to divide a large traj file into parts? Peng Tao (Wed Sep 10 2003 - 15:12:44 CDT) * Re: vmd-l: numerical output for SURF? John Stone (Wed Sep 10 2003 - 15:42:33 CDT) * vmd-l: Re: Reading large traj file error or how to divide a large traj file into parts? John Stone (Wed Sep 10 2003 - 16:07:34 CDT) * vmd-l: OpenGLExtensions.C compile problem Dave Humbird (Wed Sep 10 2003 - 18:52:59 CDT) * vmd-l: saving bond-length information Karsten Suhre (Thu Sep 11 2003 - 04:51:47 CDT) * Re: vmd-l: saving bond-length information Axel Kohlmeyer (Thu Sep 11 2003 - 06:36:48 CDT) * Re: vmd-l: Backspace not functionning in console John Stone (Thu Sep 11 2003 - 10:04:29 CDT) * Re: vmd-l: OpenGLExtensions.C compile problem John Stone (Thu Sep 11 2003 - 10:12:19 CDT) * Re: vmd-l: static text John Stone (Thu Sep 11 2003 - 13:06:06 CDT) * vmd-l: periodic woes Scott Stagg (Thu Sep 11 2003 - 15:07:33 CDT) * Re: vmd-l: periodic woes Lubos Vrbka (Thu Sep 11 2003 - 16:34:59 CDT) * vmd-l: loading trj file Ioana Cozmuta (Thu Sep 11 2003 - 18:06:47 CDT) * vmd-l: Compute B-factor from MD run Aaron Oakley (Fri Sep 12 2003 - 03:02:42 CDT) * Re: vmd-l: periodic woes Jan Saam (Fri Sep 12 2003 - 04:42:09 CDT) * vmd-l: trio program Nguyen Hoang Phuong (Fri Sep 12 2003 - 08:19:38 CDT) * vmd-l: "Distributed Cavelib" VMD port Romaric David (Fri Sep 12 2003 - 09:01:33 CDT) * Re: vmd-l: loading trj file Brian Bennion (Fri Sep 12 2003 - 09:59:35 CDT) * Re: vmd-l: trio program John Stone (Fri Sep 12 2003 - 10:12:57 CDT) * Re: vmd-l: trio program Brian Bennion (Fri Sep 12 2003 - 11:00:17 CDT) * Re: vmd-l: "Distributed Cavelib" VMD port John Stone (Fri Sep 12 2003 - 11:15:00 CDT) * Re: vmd-l: loading trj file Ioana Cozmuta (Fri Sep 12 2003 - 13:58:28 CDT) * vmd-l: Re: IMD interface code and endianness John Stone (Fri Sep 12 2003 - 14:10:51 CDT) * Re: vmd-l: loading trj file John Stone (Fri Sep 12 2003 - 15:16:48 CDT) Last message date: Fri Sep 12 2003 - 15:16:53 CDT Archived on: Sun Sep 14 2003 - 01:00:55 CDT ------------------------------------------------------------------------ 2047 messages sorted by: [ author ] [ thread ] [ subject ] [ attachment ] ------------------------------------------------------------------------ This archive was generated by hypermail 2.1.6 : Sun Sep 14 2003 - 01:00:55 CDT