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a3to1.c

aliseq.c

ccprobcalc.c

closefile.c

count_domain.c

display_align.c

dosort.c

f2c.h

get_clust.c

getdomain.c

getdsspsum.c

getfile.c

getks.c

getsec.c

gjnoc.c

gjnoc.h

gjutil.c

gjutil.h

idist.c

igetca.c

igetcadssp.c

ltou.c

makeafile.c

matfit.c

matinv.c

matmult.c

murzin_P.c

newoutput.c

openfile.c

pairfit.c

pairpath.c

pairwise.c

printmat.c

printmat2.c

probcalc.c

probplot.c

qkfit.c

readtree.c

reval.c

revmatmult.c

rossmann.c

roughfit.c

scan.c

sec_content.c

slow_scan.c

stamp.c

stamp.h

stampgetpars.c

sw7ccs.c

swstruc.c

testfile.c

treefit.c

treepath.c

treewise.c

update.c

utol.c