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alnscore.c
amenu.c
calcgapcoeff.c
calcprf1.c
calcprf2.c
calctree.c
clustalw.c
clustalw.h
dayhoff.h
gcgcheck.c
general.h
interface.c
malign.c
matrices.h
pairalign.c
param.h
prfalign.c
random.c
readmat.c
sequence.c
showpair.c
trees.c
util.c