%%
%% The primary VMD citation, should be used by all publications using VMD
%%
@article{HUMP96,
  author={William Humphrey and Andrew Dalke and Klaus Schulten},
  title={{VMD} -- {V}isual {M}olecular {D}ynamics},
  journal={Journal of Molecular Graphics},
  year=1996,
  volume=14,
  pages={33-38},
  note={},
  tbstatus={Published.},
  techrep={},
  tbreference={222}
}


%%
%% Interactive Molecular Dynamics, cited by papers doing IMD simulations
%%
@inproceedings{STON2001,
  author={John Stone and Justin Gullingsrud and Paul Grayson and Klaus Schulten},
  title={A System for Interactive Molecular Dynamics Simulation},
  booktitle={2001 ACM Symposium on Interactive 3D Graphics},
  publisher={ACM SIGGRAPH},
  address={New York},
  editor={John F. Hughes and Carlo H. S\'equin},
  pages={191-194},
  year={2001},
  note={},
  tbreference={304},
  tbstatus={Published.},
  annote={This symposium took place between March 19-21, 2001. {ISBN} 1-58113-292-1.}
}

%%
%% VMD-related packages and their respective citations
%%

%%
%% Multiple Alignment Plugin, by the ZS group
%%
@Article{EARG06,
  Author="Eargle, John and Wright, Dan and Luthey-Schulten, Zaida",
  Title="{Multiple Alignment of protein structures and sequences for VMD}",
  Journal="Bioinformatics",
  Year="2006",
  Volume="22",
  Number="4",
  Pages="504--506",
  Month="Feb"
}


%%
%% Tachyon ray tracing library (built-into VMD and/or distributed with VMD)
%% Please cite Tachyon if you use it to make figures within VMD.
%%
@mastersthesis{STON1998,
  author = {John Stone},
  title = "{\em An Efficient Library for Parallel Ray Tracing and Animation}",
  school = "Computer Science Department, University of Missouri-Rolla",
  month = "April",
  year = {1998}
}


%%
%% STRIDE Secondary Structure Prediction (distributed with VMD)
%%
%% Frishman,D & Argos,P. (1995) Knowledge-based secondary structure
%% assignment. Proteins: structure, function and genetics, 23, 566-579.

@article{FRISH1995,
  author={D. Frishman and P. Argos},
  title={Knowledge-based secondary structure assignment},
  journal={Proteins: structure, function and genetics},
  volume=23,
  pages={566-579},
  year={1995},
  note={},
  annote={}
}

%%
%% SURF solvent accessible surface calculator (distributed with VMD)
%%
%% A. Varshney, F. P. Brooks, W. V. Wright, Linearly Scalable Computation
%% of Smooth Molecular Surfaces, IEEE Comp. Graphics and Applications, 
%% v. 14 (1994) pp. 19-25.
@article{VARSH1994,
  author={A. Varshney and F. P. Brooks and W. V. Wright},
  title={Linearly Scalable Computation of Smooth Molecular Surfaces},
  journal={IEEE Computer Graphics and Applications},
  volume=14,
  pages={19-25},
  year={1994},
  note={},
  annote={}
}

%%
%% MSMS solvent excluded surface calculator (available separately from VMD)
%%
@inproceedings{SANN1995,
  author={Michel Sanner and Arthur Olsen and Jean-Claude Spehner},
  title={Fast and Robust Computation of Molecular Surfaces},
  booktitle={Proceedings of the 11th ACM Symposium on Computational Geometry},
  address={New York},
  publisher={ACM},
  pages={C6-C7},
  year={1995},
  note={},
  annote={}
}


%%
%% Paper on speech and gesture recognition with VMD
%%
@article{SHAR2000,
  author={Rajeev Sharma and Michael Zeller and Vladimir I. Pavlovic and Thomas S. Huang and Zion Lo and Stephen Chu and Yunxin Zhao and James C. Phillips and Klaus Schulten},
  title={Speech/Gesture Interface to a Visual-Computing Environment},
  journal=IEEECGA,
  volume=20,
  pages={29-37},
  year={2000},
  note={},
  tbreference={294},
  tbstatus={Published.},
  annote={}
}