NIH Resource for Macromolecular Modeling and Bioinformatics
Theoretical Biophysics Group, Beckman Institute, University of Illinois
| 1:00pm | Designing a cluster for a small research group (3169) |
| 2:15pm | Hands-on: Building small Scyld clusters (3169) |
| 3:15pm | Break (3151) |
| 3:30pm | Discussion: Cluster-building experiences (3414) |
| 3:45pm | Overview of NAMD and molecular dynamics (3414) |
| 4:00pm | Hands-on: Cluster performance experiments (3414) |
| 4:45pm | Discussion: Cluster performance (3414) |
| 5:00pm | Adjourn |
| 5:15pm | Optional demo: Interactive MD and haptic device (3151) |
http://www.scyld.com/page/support/docs/
NAMD: http://www.ks.uiuc.edu/Research/namd/
TBG Clusters: http://www.ks.uiuc.edu/Development/Computers/beowulf.html