structure ../common/1tbc_c_ws.psf coordinates ../common/1tbc_c_ws.pdb set temperature 310 set outputname 1tbc_c_ws_eq firsttimestep 0 # Input paraTypeCharmm on parameters ../common/par_all27_prot_lipid.inp temperature $temperature # Force-Field Parameters exclude scaled1-4 1-4scaling 1.0 cutoff 12. switching on switchdist 10. pairlistdist 13.5 # Integrator Parameters timestep 1.0 ; rigidBonds all ; nonbondedFreq 1 fullElectFrequency 2 stepspercycle 10 # Constant Temperature Control langevin on ; langevinDamping 5 ; langevinTemp $temperature langevinHydrogen off ; # Output outputName $outputname restartfreq 500 ; dcdfreq 500 outputEnergies 500 outputPressure 500 # EXTRA PARAMETERS # Spherical boundary conditions sphericalBC on sphericalBCcenter 1.94202923775, 4.70976829529, 5.4778342247 sphericalBCr1 24.0 sphericalBCk1 10 sphericalBCexp1 2 # Minimization minimize 100 reinitvels $temperature run 20000 ;# 20ps