carbohydrates: CHARMM versus AMBER

From: Gianluca Interlandi (gianluca_at_u.washington.edu)
Date: Fri Jun 27 2008 - 17:16:26 CDT

Dear all,

Does anybody have experience simulating carbohydrates with NAMD? In particular,
I'm interested whether the CHARMM or the AMBER force field is more accurate to
simulate carbohydrates. I want to simulate a protein attached to mannose.

Any help would be appreciated.

Thanks,

      Gianluca

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Gianluca Interlandi, PhD gianluca_at_u.washington.edu
                      +1 (206) 685 4435
                      +1 (206) 714 4303
                      http://biocroma.unizh.ch/gianluca/

Postdoc at the Department of Bioengineering
at the University of Washington, Seattle WA U.S.A.
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