Language Used and Elementary doubts

From: abhijit ramachandran (abhi_adroit_at_yahoo.com)
Date: Thu Jun 12 2008 - 00:08:27 CDT

Hi all,

I have just started using the NAMD and VMD and was going through the tutorials, i had 2 questions, first one is that in which software language is the script written i mean the .tcl scripts and the second is how can we calibrate a force field to obtain a stable system who two different substances are placed in contact with each other, say eg, a protein embedded in a lipid membrane then how do we calibrate a force field to equalize there interaction, which forces are we considering.

Thanks in advance, i hope my questions are not too dumb to be left unanswered.

Abhijit R

      

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