Re: Density over time

From: Hocine El Khaoudi enyoury (hocinee6_at_gmail.com)
Date: Tue Nov 29 2022 - 11:00:40 CST

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Dear Giacomo,

Thanks for your fast reply! Do you know if I can analyse also the water density of my system with that tool? Or just some certains?

Best Regards,

Hocine
El 29 nov 2022, 17:44 +0100, Giacomo Fiorin <giacomo.fiorin_at_gmail.com>, escribió:
> If you mean analysis, VMD has the volmap command (and related GUI plugin) to compute 3D densities of certain atoms over a trajectory.  Use 1.9.4alpha or later, 1.9.3 and earlier has a bug in that code.
>
> > On Tue, Nov 29, 2022 at 11:30 AM Hocine El Khaoudi enyoury <hocinee6_at_gmail.com> wrote:
> > > Dear all,
> > >
> > > Is there anyway to compute density over time as in GROMACS or Amber in NAMD?
> > >
> > > Best Regards,
> > >
> > > Hocine

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