How to prepare the topology file for nucleotide FEP in NAMD?

From: shreya bhattacharya (
Date: Thu Jul 14 2022 - 08:39:13 CDT

I want to perform free energy perturbation of nucleotide molecules in NAMD.
I could prepare the topology for protein FEP using mutator plugin of vmd.
However, I couldn't get any option to prepare the topology for nucleotide
FEP. Please help me regarding this.

Thank you!

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