From: İmren Bayıl (ib57001_at_student.gaziantep.edu.tr)
Date: Thu May 19 2022 - 06:27:38 CDT
I want to run namd with slurm,I am getting error.But running my local
computer I am not getting error calculation is continue but the calculation
take so long .
into my working folder;.
the error is /tmp/slurmd/job9217162/slurm_script: line 22:
/truba/home/ibayil: Is a directory How to fix this error and how to run
namd with slurm properly
#!/bin/bash
#SBATCH -p barbun
#SBATCH -A ibayil
#SBATCH -J namd-multicore-test
#SBATCH -N 2
#SBATCH -n 16
#SBATCH --time=15-00:00:00
#SBATCH --output=out_slurm/slurm-%j.out
#SBATCH --error=error_slurm/slurm-%j.err
#tum kuyruklar icin
module load centos7.3/app/namd/2017-11-10-multicore
#cuda kuyrugu icin
#module load centos7.3/app/namd/2017-11-10-multicore-cuda
echo "SLURM_NODELIST $SLURM_NODELIST"
echo "NUMBER OF CORES $SLURM_NTASKS"
$NAMD_DIR/namd2 +p $SLURM_NTASKS +idlepoll water.namd
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