From: Peter Freddolino (petefred_at_umich.edu)
Date: Sun Aug 30 2020 - 11:55:03 CDT
Sorry, as I originally asked, version of *VMD*, not version of NAMD. The
error that you describe comes from VMD, so if anyone is going to try to
reproduce it, we need a version number.
On Sun, Aug 30, 2020 at 11:48 AM Kodituwakku,Dimuthu Nirmani <
dkodituwakku_at_ufl.edu> wrote:
> Peter,
>
> Sorry about that. Version of NAMD is 2.1.3 and I have linked an example
> log file here.
>
> Best,
> Dimuthu
>
> prod9.log
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__uflorida-2Dmy.sharepoint.com_-3Au-3A_g_personal_dkodituwakku-5Fufl-5Fedu_EeCNnrOlwd1PuFWeH-5FiSkPsB0EDKWf-5FTZ48uqSBFhmM8YQ-3Fe-3DTISlov&d=DwMFAg&c=OCIEmEwdEq_aNlsP4fF3gFqSN-E3mlr2t9JcDdfOZag&r=jUfnSyKkfkyVRBIUzlG1GSGGZAZGcznwr8YliSSCjPc&m=AU6MB81edUb0AuvQWTlqXzGrrlyb0CYwMjXnrLMvC70&s=U0oMrm9aTucg-SyX07hvknlO2EpvFcUAVtjWJ12WHcI&e=>
> ------------------------------
> *From:* Kodituwakku,Dimuthu Nirmani <dkodituwakku_at_ufl.edu>
> *Sent:* Saturday, August 29, 2020 11:45 PM
> *To:* NAMD list <namd-l_at_ks.uiuc.edu>
> *Subject:* Re: namd-l: Error when using namdplot
>
> Peter,
>
> Sorry about that. Version of NAMD is 2.1.3 and I have attached an example
> log file here.
>
> Best,
> Dimuthu
> ------------------------------
> *From:* Peter Freddolino <petefred_at_umich.edu>
> *Sent:* Saturday, August 29, 2020 11:26 PM
> *To:* <namd-l_at_ks.uiuc.edu> <namd-l_at_ks.uiuc.edu>; Kodituwakku,Dimuthu
> Nirmani <dkodituwakku_at_ufl.edu>
> *Subject:* Re: namd-l: Error when using namdplot
>
> *[External Email]*
> Would definitely help to indicate the version of VMD that you're using,
> and to give an example log file that you're trying to parse.
> Best,
> Peter
>
> On Sat, Aug 29, 2020 at 8:15 PM Kodituwakku,Dimuthu Nirmani <
> dkodituwakku_at_ufl.edu> wrote:
>
> Hi all,
>
> I came across the following error when trying to use namdplot plug-in in
> VMD.
>
> can't read "memunit": no such variable
> can't read "memunit": no such variable
> while executing
> "switch -exact $memunit {
> kB { set memscale 1.0 }
> KB { set memscale 1.0 }
> MB { set memscale 1024.0 }
> GB { set memscale ..."
> (procedure "namdparse" line 24)
> invoked from within
> "namdparse $namdlogfilename"
> (procedure "::NAMDPlot::namdplot" line 9)
> invoked from within
> "::NAMDPlot::namdplot $logfile"
> (procedure "::NAMDPlot::guiplot" line 64)
> invoked from within
> "::NAMDPlot::guiplot"
> invoked from within
> ".namdplot.menubar.file.menu invoke active"
> ("uplevel" body line 1)
> invoked from within
> "uplevel #0 [list $w invoke active]"
> (procedure "tk::MenuInvoke" line 50)
> invoked from within
> "tk::MenuInvoke .namdplot.menubar.file.menu 1"
> (command bound to event)
>
> Thanks alot !
>
>
>
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