From: Giacomo Fiorin (giacomo.fiorin_at_gmail.com)
Date: Tue May 26 2020 - 10:50:43 CDT
Hi, as you probably deduced, the minimizer is having a difficult time
handling the configuration that you set. It would help others help you if
you could provide details on what you tried. For example, have you tried
writing the coordinates to a DCD trajectory file often enough and
On Tue, May 26, 2020 at 11:48 AM Ceren Ciraci <cerenciraci_at_gmail.com> wrote:
> I use NAMD software for a project. Our run constantly crashes with the
> following message:
> "minimizer slowly moving xxx atoms with bad contacts downhill"
> Could you possibly suggest any troubleshooting tips? We have tried so hard
> but haven't been able to come up with a solution yet.
> We greatly appreciate your response and time.
> Ceren CIRACI, Ph.D.Doçent | Associate Professor
> İstanbul Teknik Üniversitesi | Istanbul Technical University
> Moleküler Biyoloji ve Genetik Bölümü | Dept. of Molecular Biology & Genetics
> Ayazağa Kampusu, 307 MOBGAM Binasi, Maslak 34469 Istanbul-TR
> T: +90 212 285 7255; F: +90 212 285 7254 ; E: ciracic_at_itu.edu.tr
-- Giacomo Fiorin Associate Professor of Research, Temple University, Philadelphia, PA Research collaborator, National Institutes of Health, Bethesda, MD http://goo.gl/Q3TBQU https://github.com/giacomofiorin
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