From: Prakash Saud (prakashsaud41_at_gmail.com)
Date: Mon Jan 14 2019 - 07:46:51 CST
How can we calculate rmsd
On Jan 14, 2019 7:23 PM, "Roshan Shrestha" <roshanpra_at_gmail.com> wrote:
Catdcd is the best option available for you which can convert your dcd
file into .xyz format, from where you can easily extract the velocities as
a function of time.
On Mon, 14 Jan 2019, 18:41 ARNAB MUKHERJEE <arnabmukherjee249_at_gmail.com
> Dear NAMD users,
> I am simulating a DNA protein system with application of electric field. I
> have saved veldcd file containing the velocities. Now I want to extract the
> velocity of the centre of mass of protein as a function of time. How do I
> do this?
> I would highly appreciate any help!
> Thank you in advance,
> Arnab Mukherjee
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