flexible fitting for helical structure

From: Zhang Yan (yanzhang_at_moon.ibp.ac.cn)
Date: Tue Nov 05 2019 - 20:01:28 CST

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Hi all,
I’m doing flexible fitting using NAMD2. How can I configure the set_symmetry.tcl file when I perform a flexible fitting for structure with helical symmetry? Actually, I know how to configure this when the asymmetry unit has only one chain. But for my case, the asymmetry unit has 4 chains. Can I configure it as the attached file? Any suggestions or help are appreciated!
Best
 
张艳
Yan Zhang，
Associate Professor，
Institute of Biophysics,
Chinese Academy of Sciences

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