Re: vmd-l: PDB structures of peptides

From: Aravinda Munasinghe (
Date: Thu Feb 14 2019 - 18:26:40 CST

Hi Mikhail,
Generally, you can find PDB's from RCSB website. But since you are looking
for peptides, most probably you can find it within a PDB with a protein (I
am not familiar with peptide names). But if you know the sequence since you
are looking for a peptide, you can generate using either molfracture GUI
within VMD or Tleap in amber.
Aravinda Munasinghe

On Thu, Feb 14, 2019 at 4:29 AM Mikhail Suyetin <> wrote:

> Dear All,
> Hope you are doing great.
> I would like to ask you, where can I get a PDB files of peptides:
> AuBP1, GBP1, B1, AuBP2, Midas2, AgBP2, Z2, QBP1, A3, AgBP1, Z1, Pd4.
> Kind Regards,
> Mikhail

Aravinda Munasinghe,

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